Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0678650 | RHN73282.1 | 66.901 | 284 | 28 | 2 | 1 | 218 | 1 | 284 | 1.41e-122 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0678650 | sp|Q9SZL8|FRS5_ARATH | 26.117 | 291 | 142 | 4 | 1 | 218 | 77 | 367 | 2.71e-29 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0678650 | A0A396J7J0 | 66.901 | 284 | 28 | 2 | 1 | 218 | 1 | 284 | 6.74e-123 | 374 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0678650 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0678650 | MtrunA17_Chr2g0296781 | 66.901 | 284 | 28 | 2 | 1 | 218 | 1 | 284 | 1.30e-126 | 374 |
| Msa0678650 | MtrunA17_Chr1g0196541 | 47.735 | 287 | 78 | 3 | 1 | 218 | 1 | 284 | 4.60e-82 | 258 |
| Msa0678650 | MtrunA17_Chr6g0477261 | 68.391 | 174 | 15 | 2 | 84 | 218 | 1 | 173 | 6.03e-73 | 233 |
| Msa0678650 | MtrunA17_Chr5g0441581 | 36.972 | 284 | 104 | 4 | 1 | 217 | 36 | 311 | 3.38e-51 | 176 |
| Msa0678650 | MtrunA17_Chr1g0202341 | 30.450 | 289 | 127 | 6 | 1 | 217 | 55 | 341 | 6.76e-34 | 127 |
| Msa0678650 | MtrunA17_Chr6g0476431 | 81.250 | 64 | 12 | 0 | 1 | 64 | 1 | 64 | 3.74e-32 | 112 |
| Msa0678650 | MtrunA17_Chr5g0448761 | 27.458 | 295 | 137 | 4 | 1 | 218 | 64 | 358 | 1.90e-31 | 120 |
| Msa0678650 | MtrunA17_Chr2g0291591 | 28.723 | 282 | 135 | 7 | 1 | 216 | 68 | 349 | 2.94e-31 | 119 |
| Msa0678650 | MtrunA17_Chr2g0329031 | 28.723 | 282 | 134 | 9 | 1 | 218 | 18 | 296 | 1.94e-28 | 112 |
| Msa0678650 | MtrunA17_Chr2g0291581 | 28.727 | 275 | 136 | 7 | 1 | 217 | 75 | 347 | 1.76e-27 | 109 |
| Msa0678650 | MtrunA17_Chr5g0448511 | 50.602 | 83 | 41 | 0 | 136 | 218 | 48 | 130 | 6.51e-25 | 101 |
| Msa0678650 | MtrunA17_Chr2g0324011 | 27.083 | 288 | 140 | 5 | 1 | 218 | 14 | 301 | 1.46e-24 | 100 |
| Msa0678650 | MtrunA17_Chr3g0080351 | 28.671 | 286 | 128 | 9 | 1 | 218 | 80 | 357 | 6.92e-24 | 99.4 |
| Msa0678650 | MtrunA17_Chr2g0287061 | 49.398 | 83 | 42 | 0 | 136 | 218 | 357 | 439 | 9.12e-24 | 99.0 |
| Msa0678650 | MtrunA17_Chr5g0440451 | 48.193 | 83 | 43 | 0 | 136 | 218 | 257 | 339 | 1.11e-23 | 98.6 |
| Msa0678650 | MtrunA17_Chr1g0198761 | 31.308 | 214 | 104 | 4 | 44 | 218 | 140 | 349 | 2.35e-23 | 97.4 |
| Msa0678650 | MtrunA17_Chr1g0207551 | 24.825 | 286 | 147 | 6 | 1 | 218 | 38 | 323 | 7.66e-23 | 96.3 |
| Msa0678650 | MtrunA17_Chr3g0118611 | 49.398 | 83 | 42 | 0 | 136 | 218 | 154 | 236 | 2.66e-22 | 94.7 |
| Msa0678650 | MtrunA17_Chr2g0287651 | 24.658 | 292 | 145 | 7 | 1 | 218 | 79 | 369 | 4.84e-22 | 94.0 |
| Msa0678650 | MtrunA17_Chr5g0431001 | 30.653 | 199 | 99 | 3 | 59 | 218 | 165 | 363 | 1.79e-21 | 92.0 |
| Msa0678650 | MtrunA17_Chr7g0258861 | 26.812 | 276 | 129 | 7 | 1 | 203 | 14 | 289 | 3.08e-21 | 89.7 |
| Msa0678650 | MtrunA17_Chr3g0082121 | 25.795 | 283 | 143 | 7 | 1 | 218 | 47 | 327 | 1.14e-19 | 87.0 |
| Msa0678650 | MtrunA17_Chr1g0164591 | 34.815 | 135 | 80 | 1 | 92 | 218 | 73 | 207 | 2.41e-19 | 84.7 |
| Msa0678650 | MtrunA17_Chr8g0363841 | 29.534 | 193 | 97 | 2 | 62 | 215 | 114 | 306 | 2.66e-19 | 85.9 |
| Msa0678650 | MtrunA17_Chr1g0203721 | 39.785 | 93 | 56 | 0 | 126 | 218 | 265 | 357 | 1.08e-18 | 84.0 |
| Msa0678650 | MtrunA17_Chr6g0458391 | 41.573 | 89 | 52 | 0 | 130 | 218 | 411 | 499 | 1.07e-17 | 81.3 |
| Msa0678650 | MtrunA17_Chr1g0203051 | 24.783 | 230 | 131 | 3 | 26 | 218 | 147 | 371 | 1.41e-17 | 80.9 |
| Msa0678650 | MtrunA17_Chr2g0276841 | 25.871 | 201 | 106 | 4 | 59 | 218 | 169 | 367 | 8.24e-17 | 78.6 |
| Msa0678650 | MtrunA17_Chr6g0451441 | 29.299 | 157 | 80 | 3 | 1 | 128 | 91 | 245 | 1.21e-15 | 75.1 |
| Msa0678650 | MtrunA17_Chr2g0294841 | 34.211 | 76 | 50 | 0 | 143 | 218 | 270 | 345 | 4.39e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0678650 | AT4G38180.1 | 26.117 | 291 | 142 | 4 | 1 | 218 | 77 | 367 | 2.75e-30 | 118 |
| Msa0678650 | AT1G80010.1 | 53.086 | 81 | 38 | 0 | 137 | 217 | 308 | 388 | 1.33e-26 | 107 |
| Msa0678650 | AT4G15090.1 | 25.180 | 278 | 137 | 5 | 12 | 218 | 66 | 343 | 4.79e-26 | 105 |
| Msa0678650 | AT4G15090.5 | 25.180 | 278 | 137 | 5 | 12 | 218 | 66 | 343 | 4.79e-26 | 105 |
| Msa0678650 | AT4G15090.3 | 25.180 | 278 | 137 | 5 | 12 | 218 | 66 | 343 | 4.79e-26 | 105 |
| Msa0678650 | AT4G15090.2 | 25.180 | 278 | 137 | 5 | 12 | 218 | 66 | 343 | 4.79e-26 | 105 |
| Msa0678650 | AT4G15090.4 | 25.180 | 278 | 137 | 5 | 12 | 218 | 66 | 343 | 4.79e-26 | 105 |
| Msa0678650 | AT1G76320.3 | 26.950 | 282 | 138 | 7 | 1 | 217 | 1 | 279 | 6.09e-26 | 105 |
| Msa0678650 | AT1G76320.1 | 26.950 | 282 | 138 | 7 | 1 | 217 | 1 | 279 | 6.49e-26 | 105 |
| Msa0678650 | AT1G76320.4 | 26.950 | 282 | 138 | 7 | 1 | 217 | 1 | 279 | 6.49e-26 | 105 |
| Msa0678650 | AT1G76320.2 | 26.950 | 282 | 138 | 7 | 1 | 217 | 1 | 279 | 6.94e-26 | 105 |
| Msa0678650 | AT5G18960.2 | 27.668 | 253 | 148 | 6 | 1 | 218 | 215 | 467 | 4.22e-25 | 103 |
| Msa0678650 | AT5G18960.1 | 27.668 | 253 | 148 | 6 | 1 | 218 | 215 | 467 | 4.22e-25 | 103 |
| Msa0678650 | AT2G27110.2 | 26.277 | 274 | 134 | 7 | 1 | 218 | 53 | 314 | 2.86e-24 | 100 |
| Msa0678650 | AT2G27110.1 | 26.277 | 274 | 134 | 7 | 1 | 218 | 53 | 314 | 2.86e-24 | 100 |
| Msa0678650 | AT2G27110.3 | 43.478 | 92 | 52 | 0 | 127 | 218 | 78 | 169 | 7.47e-24 | 99.4 |
| Msa0678650 | AT3G06250.2 | 29.762 | 252 | 141 | 9 | 1 | 218 | 194 | 443 | 3.27e-23 | 97.4 |
| Msa0678650 | AT3G06250.1 | 29.762 | 252 | 141 | 9 | 1 | 218 | 194 | 443 | 3.27e-23 | 97.4 |
| Msa0678650 | AT3G06250.3 | 29.762 | 252 | 141 | 9 | 1 | 218 | 194 | 443 | 3.27e-23 | 97.4 |
| Msa0678650 | AT4G38170.1 | 43.564 | 101 | 48 | 2 | 119 | 218 | 40 | 132 | 1.46e-22 | 95.5 |
| Msa0678650 | AT3G22170.2 | 48.780 | 82 | 42 | 0 | 137 | 218 | 271 | 352 | 5.17e-22 | 94.4 |
| Msa0678650 | AT3G22170.1 | 48.780 | 82 | 42 | 0 | 137 | 218 | 271 | 352 | 5.17e-22 | 94.4 |
| Msa0678650 | AT2G32250.8 | 42.391 | 92 | 53 | 0 | 127 | 218 | 155 | 246 | 1.74e-21 | 92.4 |
| Msa0678650 | AT2G32250.5 | 42.391 | 92 | 53 | 0 | 127 | 218 | 196 | 287 | 1.79e-21 | 92.4 |
| Msa0678650 | AT2G32250.7 | 42.391 | 92 | 53 | 0 | 127 | 218 | 155 | 246 | 1.79e-21 | 92.4 |
| Msa0678650 | AT2G32250.6 | 42.391 | 92 | 53 | 0 | 127 | 218 | 196 | 287 | 2.09e-21 | 92.4 |
| Msa0678650 | AT2G32250.1 | 42.391 | 92 | 53 | 0 | 127 | 218 | 196 | 287 | 2.09e-21 | 92.4 |
| Msa0678650 | AT2G32250.3 | 42.391 | 92 | 53 | 0 | 127 | 218 | 196 | 287 | 2.09e-21 | 92.4 |
| Msa0678650 | AT2G32250.2 | 42.391 | 92 | 53 | 0 | 127 | 218 | 196 | 287 | 2.15e-21 | 92.4 |
| Msa0678650 | AT2G32250.4 | 42.391 | 92 | 53 | 0 | 127 | 218 | 196 | 287 | 2.15e-21 | 92.4 |
| Msa0678650 | AT1G52520.1 | 42.683 | 82 | 46 | 1 | 136 | 217 | 283 | 363 | 6.22e-19 | 85.1 |
| Msa0678650 | AT5G28530.3 | 24.262 | 305 | 137 | 9 | 3 | 218 | 61 | 360 | 2.35e-16 | 77.8 |
| Msa0678650 | AT5G28530.2 | 24.262 | 305 | 137 | 9 | 3 | 218 | 61 | 360 | 2.35e-16 | 77.8 |
| Msa0678650 | AT5G28530.1 | 24.262 | 305 | 137 | 9 | 3 | 218 | 61 | 360 | 2.44e-16 | 77.8 |
| Msa0678650 | AT1G10240.2 | 24.378 | 201 | 109 | 4 | 59 | 218 | 147 | 345 | 1.08e-14 | 72.8 |
| Msa0678650 | AT1G10240.1 | 24.378 | 201 | 109 | 4 | 59 | 218 | 147 | 345 | 1.08e-14 | 72.8 |
| Msa0678650 | AT4G19990.5 | 26.374 | 273 | 136 | 8 | 3 | 218 | 27 | 291 | 2.76e-14 | 71.6 |
| Msa0678650 | AT4G19990.3 | 26.374 | 273 | 136 | 8 | 3 | 218 | 27 | 291 | 2.90e-14 | 71.6 |
| Msa0678650 | AT4G19990.4 | 26.374 | 273 | 136 | 8 | 3 | 218 | 27 | 291 | 2.90e-14 | 71.6 |
| Msa0678650 | AT4G19990.6 | 26.374 | 273 | 136 | 8 | 3 | 218 | 27 | 291 | 2.98e-14 | 71.6 |
| Msa0678650 | AT4G19990.2 | 26.374 | 273 | 136 | 8 | 3 | 218 | 27 | 291 | 2.98e-14 | 71.6 |
| Msa0678650 | AT4G19990.7 | 26.374 | 273 | 136 | 8 | 3 | 218 | 41 | 305 | 3.36e-14 | 71.2 |
| Msa0678650 | AT4G19990.1 | 39.130 | 92 | 55 | 1 | 128 | 218 | 143 | 234 | 3.71e-14 | 71.2 |
Find 31 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAATTACGAAATGTGTTT+TGG | 0.198554 | 4_4:-34748558 | Msa0678650:CDS |
| TATGCTCAACGGGTGGGTTT+TGG | 0.262677 | 4_4:-34749084 | Msa0678650:CDS |
| AGGGCTGCATATGAATATTT+TGG | 0.267859 | 4_4:-34748521 | Msa0678650:CDS |
| TGATCAGTGATTATGGCATT+TGG | 0.345022 | 4_4:+34748314 | None:intergenic |
| TCAGTCTTGATCAGTGATTA+TGG | 0.378957 | 4_4:+34748307 | None:intergenic |
| TTTAGATCAAACAAGAATAT+GGG | 0.383170 | 4_4:-34748829 | Msa0678650:CDS |
| CACGATGAGTCTATGTTGTT+AGG | 0.394132 | 4_4:-34748419 | Msa0678650:CDS |
| TCTCTAGTCGTTGAAGCAAA+TGG | 0.412215 | 4_4:-34748739 | Msa0678650:CDS |
| CCGTGTGTTGGGATGTCATT+TGG | 0.418180 | 4_4:-34749141 | None:intergenic |
| ATATTTATTTGTTAAGTAAG+TGG | 0.436838 | 4_4:+34748478 | None:intergenic |
| GGGTATGAGAATCTCACATT+TGG | 0.461849 | 4_4:-34748718 | Msa0678650:CDS |
| CTCTAGTCGTTGAAGCAAAT+GGG | 0.464172 | 4_4:-34748738 | Msa0678650:CDS |
| GCATACTCATGATCTAAGTC+CGG | 0.480268 | 4_4:-34748866 | Msa0678650:CDS |
| CTTTAGCATGTAATCGAGCT+AGG | 0.482007 | 4_4:-34749011 | Msa0678650:CDS |
| ACTCCAACAAAATGAGCAAA+AGG | 0.484303 | 4_4:+34748449 | None:intergenic |
| CATACTCATGATCTAAGTCC+GGG | 0.487754 | 4_4:-34748865 | Msa0678650:CDS |
| TTACACGAATTATGCTCAAC+GGG | 0.506941 | 4_4:-34749094 | Msa0678650:CDS |
| CTAAAATATCGTGCTTTCCC+CGG | 0.508016 | 4_4:+34748847 | None:intergenic |
| ACGAATTATGCTCAACGGGT+GGG | 0.525850 | 4_4:-34749090 | Msa0678650:CDS |
| AGCATAATTCGTGTAATACT+CGG | 0.539308 | 4_4:+34749101 | None:intergenic |
| CACGAATTATGCTCAACGGG+TGG | 0.544693 | 4_4:-34749091 | Msa0678650:CDS |
| TTAGAACTCAATGATCAAGC+TGG | 0.558672 | 4_4:-34748787 | Msa0678650:CDS |
| TTAGATCAAACAAGAATATG+GGG | 0.564161 | 4_4:-34748828 | Msa0678650:CDS |
| TAGAACTCAATGATCAAGCT+GGG | 0.577189 | 4_4:-34748786 | Msa0678650:CDS |
| TTTGGGAGATGCAAGATGTA+GGG | 0.603892 | 4_4:-34748540 | Msa0678650:CDS |
| TTGTGCTCTGTTGTCAAATG+AGG | 0.610506 | 4_4:-34748396 | Msa0678650:CDS |
| TTACTTGGTTGTTTAAGACA+TGG | 0.615688 | 4_4:-34748361 | Msa0678650:CDS |
| CTGCAGGAACTATATAAACA+AGG | 0.626913 | 4_4:-34748686 | Msa0678650:intron |
| ATTACACGAATTATGCTCAA+CGG | 0.634438 | 4_4:-34749095 | Msa0678650:CDS |
| TAGATCAAACAAGAATATGG+GGG | 0.663543 | 4_4:-34748827 | Msa0678650:CDS |
| ATACTCATGATCTAAGTCCG+GGG | 0.710170 | 4_4:-34748864 | Msa0678650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATACAAAAATATTTTGTT+AGG | - | chr4_4:34748809-34748828 | Msa0678650:CDS | 15.0% |
| !!! | TAGTCAATTTTATTATGTAA+TGG | - | chr4_4:34748840-34748859 | Msa0678650:CDS | 15.0% |
| !!! | ATATTTATTTGTTAAGTAAG+TGG | + | chr4_4:34748961-34748980 | None:intergenic | 15.0% |
| !!! | CAATACAAAAATATTTTGTT+AGG | - | chr4_4:34748809-34748828 | Msa0678650:CDS | 15.0% |
| !!! | TAGTCAATTTTATTATGTAA+TGG | - | chr4_4:34748840-34748859 | Msa0678650:CDS | 15.0% |
| !!! | ATATTTATTTGTTAAGTAAG+TGG | + | chr4_4:34748961-34748980 | None:intergenic | 15.0% |
| !! | TGCTAAAATAAGTTCAAAAA+AGG | - | chr4_4:34748378-34748397 | Msa0678650:CDS | 20.0% |
| !! | GCTAAAATAAGTTCAAAAAA+GGG | - | chr4_4:34748379-34748398 | Msa0678650:CDS | 20.0% |
| !! | AATGCATGTATTTATTTAGA+CGG | - | chr4_4:34748519-34748538 | Msa0678650:CDS | 20.0% |
| !!! | TTTTAGATCAAACAAGAATA+TGG | - | chr4_4:34748606-34748625 | Msa0678650:intron | 20.0% |
| !! | TTTAGATCAAACAAGAATAT+GGG | - | chr4_4:34748607-34748626 | Msa0678650:intron | 20.0% |
| !!! | ATTTTATTATGTAATGGATG+TGG | - | chr4_4:34748846-34748865 | Msa0678650:CDS | 20.0% |
| !! | TGCTAAAATAAGTTCAAAAA+AGG | - | chr4_4:34748378-34748397 | Msa0678650:CDS | 20.0% |
| !! | GCTAAAATAAGTTCAAAAAA+GGG | - | chr4_4:34748379-34748398 | Msa0678650:CDS | 20.0% |
| !! | AATGCATGTATTTATTTAGA+CGG | - | chr4_4:34748519-34748538 | Msa0678650:CDS | 20.0% |
| !!! | TTTTAGATCAAACAAGAATA+TGG | - | chr4_4:34748606-34748625 | Msa0678650:intron | 20.0% |
| !! | TTTAGATCAAACAAGAATAT+GGG | - | chr4_4:34748607-34748626 | Msa0678650:intron | 20.0% |
| !!! | ATTTTATTATGTAATGGATG+TGG | - | chr4_4:34748846-34748865 | Msa0678650:CDS | 20.0% |
| !!! | TTTACAATGTTGTTTCTTAC+AGG | + | chr4_4:34748490-34748509 | None:intergenic | 25.0% |
| ! | TTAGATCAAACAAGAATATG+GGG | - | chr4_4:34748608-34748627 | Msa0678650:intron | 25.0% |
| !! | TCAATTACGAAATGTGTTTT+GGG | - | chr4_4:34748879-34748898 | Msa0678650:intron | 25.0% |
| !!! | TTTACAATGTTGTTTCTTAC+AGG | + | chr4_4:34748490-34748509 | None:intergenic | 25.0% |
| ! | TTAGATCAAACAAGAATATG+GGG | - | chr4_4:34748608-34748627 | Msa0678650:intron | 25.0% |
| !! | TCAATTACGAAATGTGTTTT+GGG | - | chr4_4:34748879-34748898 | Msa0678650:intron | 25.0% |
| AGCATAATTCGTGTAATACT+CGG | + | chr4_4:34748338-34748357 | None:intergenic | 30.0% | |
| ATTACACGAATTATGCTCAA+CGG | - | chr4_4:34748341-34748360 | Msa0678650:CDS | 30.0% | |
| TAGATCAAACAAGAATATGG+GGG | - | chr4_4:34748609-34748628 | Msa0678650:intron | 30.0% | |
| !! | TATTATGTAATGGATGTGGA+TGG | - | chr4_4:34748850-34748869 | Msa0678650:CDS | 30.0% |
| ! | GTCAATTACGAAATGTGTTT+TGG | - | chr4_4:34748878-34748897 | Msa0678650:intron | 30.0% |
| ! | AGGATACTGAAACTTTTACT+TGG | - | chr4_4:34749060-34749079 | Msa0678650:CDS | 30.0% |
| ! | TTACTTGGTTGTTTAAGACA+TGG | - | chr4_4:34749075-34749094 | Msa0678650:CDS | 30.0% |
| AGCATAATTCGTGTAATACT+CGG | + | chr4_4:34748338-34748357 | None:intergenic | 30.0% | |
| ATTACACGAATTATGCTCAA+CGG | - | chr4_4:34748341-34748360 | Msa0678650:CDS | 30.0% | |
| TAGATCAAACAAGAATATGG+GGG | - | chr4_4:34748609-34748628 | Msa0678650:intron | 30.0% | |
| !! | TATTATGTAATGGATGTGGA+TGG | - | chr4_4:34748850-34748869 | Msa0678650:CDS | 30.0% |
| ! | GTCAATTACGAAATGTGTTT+TGG | - | chr4_4:34748878-34748897 | Msa0678650:intron | 30.0% |
| ! | AGGATACTGAAACTTTTACT+TGG | - | chr4_4:34749060-34749079 | Msa0678650:CDS | 30.0% |
| ! | TTACTTGGTTGTTTAAGACA+TGG | - | chr4_4:34749075-34749094 | Msa0678650:CDS | 30.0% |
| TTACACGAATTATGCTCAAC+GGG | - | chr4_4:34748342-34748361 | Msa0678650:CDS | 35.0% | |
| AAGTTCAAAAAAGGGAGATG+AGG | - | chr4_4:34748387-34748406 | Msa0678650:CDS | 35.0% | |
| AGTTCAAAAAAGGGAGATGA+GGG | - | chr4_4:34748388-34748407 | Msa0678650:CDS | 35.0% | |
| TTAGAACTCAATGATCAAGC+TGG | - | chr4_4:34748649-34748668 | Msa0678650:intron | 35.0% | |
| TAGAACTCAATGATCAAGCT+GGG | - | chr4_4:34748650-34748669 | Msa0678650:intron | 35.0% | |
| CTGCAGGAACTATATAAACA+AGG | - | chr4_4:34748750-34748769 | Msa0678650:CDS | 35.0% | |
| ! | AGGGCTGCATATGAATATTT+TGG | - | chr4_4:34748915-34748934 | Msa0678650:intron | 35.0% |
| ! | ATGCCTTTTGCTCATTTTGT+TGG | - | chr4_4:34748984-34749003 | Msa0678650:CDS | 35.0% |
| ACTCCAACAAAATGAGCAAA+AGG | + | chr4_4:34748990-34749009 | None:intergenic | 35.0% | |
| TGATCAGTGATTATGGCATT+TGG | + | chr4_4:34749125-34749144 | None:intergenic | 35.0% | |
| TCAGTCTTGATCAGTGATTA+TGG | + | chr4_4:34749132-34749151 | None:intergenic | 35.0% | |
| TTACACGAATTATGCTCAAC+GGG | - | chr4_4:34748342-34748361 | Msa0678650:CDS | 35.0% | |
| AAGTTCAAAAAAGGGAGATG+AGG | - | chr4_4:34748387-34748406 | Msa0678650:CDS | 35.0% | |
| AGTTCAAAAAAGGGAGATGA+GGG | - | chr4_4:34748388-34748407 | Msa0678650:CDS | 35.0% | |
| TTAGAACTCAATGATCAAGC+TGG | - | chr4_4:34748649-34748668 | Msa0678650:intron | 35.0% | |
| TAGAACTCAATGATCAAGCT+GGG | - | chr4_4:34748650-34748669 | Msa0678650:intron | 35.0% | |
| CTGCAGGAACTATATAAACA+AGG | - | chr4_4:34748750-34748769 | Msa0678650:CDS | 35.0% | |
| ! | AGGGCTGCATATGAATATTT+TGG | - | chr4_4:34748915-34748934 | Msa0678650:intron | 35.0% |
| ! | ATGCCTTTTGCTCATTTTGT+TGG | - | chr4_4:34748984-34749003 | Msa0678650:CDS | 35.0% |
| ACTCCAACAAAATGAGCAAA+AGG | + | chr4_4:34748990-34749009 | None:intergenic | 35.0% | |
| TGATCAGTGATTATGGCATT+TGG | + | chr4_4:34749125-34749144 | None:intergenic | 35.0% | |
| TCAGTCTTGATCAGTGATTA+TGG | + | chr4_4:34749132-34749151 | None:intergenic | 35.0% | |
| GTTCAAAAAAGGGAGATGAG+GGG | - | chr4_4:34748389-34748408 | Msa0678650:CDS | 40.0% | |
| CTTTAGCATGTAATCGAGCT+AGG | - | chr4_4:34748425-34748444 | Msa0678650:CDS | 40.0% | |
| GCATACTCATGATCTAAGTC+CGG | - | chr4_4:34748570-34748589 | Msa0678650:intron | 40.0% | |
| CATACTCATGATCTAAGTCC+GGG | - | chr4_4:34748571-34748590 | Msa0678650:intron | 40.0% | |
| ATACTCATGATCTAAGTCCG+GGG | - | chr4_4:34748572-34748591 | Msa0678650:intron | 40.0% | |
| CTAAAATATCGTGCTTTCCC+CGG | + | chr4_4:34748592-34748611 | None:intergenic | 40.0% | |
| TCTCTAGTCGTTGAAGCAAA+TGG | - | chr4_4:34748697-34748716 | Msa0678650:CDS | 40.0% | |
| CTCTAGTCGTTGAAGCAAAT+GGG | - | chr4_4:34748698-34748717 | Msa0678650:CDS | 40.0% | |
| GGGTATGAGAATCTCACATT+TGG | - | chr4_4:34748718-34748737 | Msa0678650:CDS | 40.0% | |
| CATTTGGAGAAAAAGACTGC+AGG | - | chr4_4:34748734-34748753 | Msa0678650:CDS | 40.0% | |
| !! | TTTTGGGAGATGCAAGATGT+AGG | - | chr4_4:34748895-34748914 | Msa0678650:intron | 40.0% |
| TTTGGGAGATGCAAGATGTA+GGG | - | chr4_4:34748896-34748915 | Msa0678650:intron | 40.0% | |
| CACGATGAGTCTATGTTGTT+AGG | - | chr4_4:34749017-34749036 | Msa0678650:CDS | 40.0% | |
| TTGTGCTCTGTTGTCAAATG+AGG | - | chr4_4:34749040-34749059 | Msa0678650:CDS | 40.0% | |
| GTTCAAAAAAGGGAGATGAG+GGG | - | chr4_4:34748389-34748408 | Msa0678650:CDS | 40.0% | |
| CTTTAGCATGTAATCGAGCT+AGG | - | chr4_4:34748425-34748444 | Msa0678650:CDS | 40.0% | |
| GCATACTCATGATCTAAGTC+CGG | - | chr4_4:34748570-34748589 | Msa0678650:intron | 40.0% | |
| CATACTCATGATCTAAGTCC+GGG | - | chr4_4:34748571-34748590 | Msa0678650:intron | 40.0% | |
| ATACTCATGATCTAAGTCCG+GGG | - | chr4_4:34748572-34748591 | Msa0678650:intron | 40.0% | |
| CTAAAATATCGTGCTTTCCC+CGG | + | chr4_4:34748592-34748611 | None:intergenic | 40.0% | |
| TCTCTAGTCGTTGAAGCAAA+TGG | - | chr4_4:34748697-34748716 | Msa0678650:CDS | 40.0% | |
| CTCTAGTCGTTGAAGCAAAT+GGG | - | chr4_4:34748698-34748717 | Msa0678650:CDS | 40.0% | |
| GGGTATGAGAATCTCACATT+TGG | - | chr4_4:34748718-34748737 | Msa0678650:CDS | 40.0% | |
| CATTTGGAGAAAAAGACTGC+AGG | - | chr4_4:34748734-34748753 | Msa0678650:CDS | 40.0% | |
| !! | TTTTGGGAGATGCAAGATGT+AGG | - | chr4_4:34748895-34748914 | Msa0678650:intron | 40.0% |
| TTTGGGAGATGCAAGATGTA+GGG | - | chr4_4:34748896-34748915 | Msa0678650:intron | 40.0% | |
| CACGATGAGTCTATGTTGTT+AGG | - | chr4_4:34749017-34749036 | Msa0678650:CDS | 40.0% | |
| TTGTGCTCTGTTGTCAAATG+AGG | - | chr4_4:34749040-34749059 | Msa0678650:CDS | 40.0% | |
| ACGAATTATGCTCAACGGGT+GGG | - | chr4_4:34748346-34748365 | Msa0678650:CDS | 45.0% | |
| ATATGGGGGCTCAAATGAAG+AGG | - | chr4_4:34748623-34748642 | Msa0678650:intron | 45.0% | |
| AAGGTAAGACGACTACGACT+TGG | - | chr4_4:34748769-34748788 | Msa0678650:CDS | 45.0% | |
| AGGTAAGACGACTACGACTT+GGG | - | chr4_4:34748770-34748789 | Msa0678650:CDS | 45.0% | |
| ACGAATTATGCTCAACGGGT+GGG | - | chr4_4:34748346-34748365 | Msa0678650:CDS | 45.0% | |
| ATATGGGGGCTCAAATGAAG+AGG | - | chr4_4:34748623-34748642 | Msa0678650:intron | 45.0% | |
| AAGGTAAGACGACTACGACT+TGG | - | chr4_4:34748769-34748788 | Msa0678650:CDS | 45.0% | |
| AGGTAAGACGACTACGACTT+GGG | - | chr4_4:34748770-34748789 | Msa0678650:CDS | 45.0% | |
| CACGAATTATGCTCAACGGG+TGG | - | chr4_4:34748345-34748364 | Msa0678650:CDS | 50.0% | |
| !! | TATGCTCAACGGGTGGGTTT+TGG | - | chr4_4:34748352-34748371 | Msa0678650:CDS | 50.0% |
| CACGAATTATGCTCAACGGG+TGG | - | chr4_4:34748345-34748364 | Msa0678650:CDS | 50.0% | |
| !! | TATGCTCAACGGGTGGGTTT+TGG | - | chr4_4:34748352-34748371 | Msa0678650:CDS | 50.0% |
| TGGGGGCTCAAATGAAGAGG+AGG | - | chr4_4:34748626-34748645 | Msa0678650:intron | 55.0% | |
| ! | AGACGACTACGACTTGGGAC+AGG | - | chr4_4:34748775-34748794 | Msa0678650:CDS | 55.0% |
| TGGGGGCTCAAATGAAGAGG+AGG | - | chr4_4:34748626-34748645 | Msa0678650:intron | 55.0% | |
| ! | AGACGACTACGACTTGGGAC+AGG | - | chr4_4:34748775-34748794 | Msa0678650:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 34748307 | 34749151 | 34748307 | ID=Msa0678650;Name=Msa0678650 |
| chr4_4 | mRNA | 34748307 | 34749151 | 34748307 | ID=Msa0678650-mRNA-1;Parent=Msa0678650;Name=Msa0678650-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|1|1|3|0|218 |
| chr4_4 | exon | 34748969 | 34749151 | 34748969 | ID=Msa0678650-mRNA-1:exon:8336;Parent=Msa0678650-mRNA-1 |
| chr4_4 | exon | 34748687 | 34748887 | 34748687 | ID=Msa0678650-mRNA-1:exon:8335;Parent=Msa0678650-mRNA-1 |
| chr4_4 | exon | 34748307 | 34748579 | 34748307 | ID=Msa0678650-mRNA-1:exon:8334;Parent=Msa0678650-mRNA-1 |
| chr4_4 | CDS | 34748969 | 34749151 | 34748969 | ID=Msa0678650-mRNA-1:cds;Parent=Msa0678650-mRNA-1 |
| chr4_4 | CDS | 34748687 | 34748887 | 34748687 | ID=Msa0678650-mRNA-1:cds;Parent=Msa0678650-mRNA-1 |
| chr4_4 | CDS | 34748307 | 34748579 | 34748307 | ID=Msa0678650-mRNA-1:cds;Parent=Msa0678650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
