AlfalfaGEDB | Msa0679130

M. sativa cultivar zhongmu-4 / Msa0679130

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141
PFAM: PF06203.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0679130	XP_039689728.1	82.511	223	14	4	1	199	1	222	1.29e-111	328

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0679130	G7JSL7	75.720	243	14	5	1	199	1	242	2.47e-107	317

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TFs/TRs:

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Gene ID	Type	Classification
Msa0679130	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0679130	MtrunA17_Chr4g0030411	90.566	106	5	2	1	101	1	106	1.45e-59	182
Msa0679130	MtrunA17_Chr4g0030421	73.950	119	10	2	101	199	15	132	1.44e-46	149
Msa0679130	MtrunA17_Chr2g0327621	43.725	247	82	8	6	199	9	251	5.12e-45	149
Msa0679130	MtrunA17_Chr8g0387241	39.231	130	41	7	53	145	141	269	2.70e-11	61.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0679130	AT5G59990.1	35.185	162	59	6	49	178	87	234	2.65e-17	77.8
Msa0679130	AT5G41380.1	37.267	161	47	8	53	171	126	274	6.93e-15	72.0

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Find 55 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGATGAGGAAGAAAAGAAT+TGG	0.306527	4_4:+36622225	Msa0679130:CDS
AATTATAATAGCTGTAGCAG+CGG	0.651255	4_4:+36618517	Msa0679130:CDS
ACACTATATGAGGAACTATG+GGG	0.745732	4_4:-36622302	None:intergenic
ACAGTAGGCCACGTATTAGA+GGG	0.598648	4_4:+36622126	Msa0679130:CDS
AGACACTATATGAGGAACTA+TGG	0.331456	4_4:-36622304	None:intergenic
AGATGAGGAAGAAAAGAATT+GGG	0.439080	4_4:+36622226	Msa0679130:CDS
AGCCAGTCCTTACAGCCCAG+AGG	0.687171	4_4:+36620718	Msa0679130:CDS
AGCGGGTGCACTAGCTACTT+GGG	0.466418	4_4:+36618535	Msa0679130:intron
ATATGGCTCCATTGATTTGG+TGG	0.458606	4_4:-36622182	None:intergenic
ATCAAGAAAATGGTCCGGTC+CGG	0.528457	4_4:+36618662	Msa0679130:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTATAATAGCTGTAGCAG+CGG	+	chr4_4:36618517-36618536	Msa0679130:CDS	30.0%
CAGCAAACAAAGAAGAAAAA+GGG	-	chr4_4:36618633-36618652	None:intergenic	30.0%
TCAGCAAACAAAGAAGAAAA+AGG	-	chr4_4:36618634-36618653	None:intergenic	30.0%
GAATTGCTTGATCAAGAAAA+TGG	+	chr4_4:36618652-36618671	Msa0679130:CDS	30.0%
GAGGAAGATGATATTGTAAA+CGG	-	chr4_4:36618726-36618745	None:intergenic	30.0%
ATGTTGAATCTAATGCAAGT+AGG	+	chr4_4:36618921-36618940	Msa0679130:intron	30.0%
TGTTGAATCTAATGCAAGTA+GGG	+	chr4_4:36618922-36618941	Msa0679130:intron	30.0%
AACACGTTTAAATTCCAAGT+TGG	+	chr4_4:36619600-36619619	Msa0679130:intron	30.0%
AAAAAAGCGATGATGAAATG+GGG	-	chr4_4:36619735-36619754	None:intergenic	30.0%
TTCTTCTTAAACAACTAGGA+AGG	+	chr4_4:36619808-36619827	Msa0679130:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	36618403	36622418	36618403	ID=Msa0679130;Name=Msa0679130
chr4_4	mRNA	36618403	36622418	36618403	ID=Msa0679130-mRNA-1;Parent=Msa0679130;Name=Msa0679130-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|0.33\|0.25\|1\|0.33\|0.25\|4\|84\|199
chr4_4	exon	36618403	36618539	36618403	ID=Msa0679130-mRNA-1:exon:8600;Parent=Msa0679130-mRNA-1
chr4_4	exon	36618549	36618714	36618549	ID=Msa0679130-mRNA-1:exon:8601;Parent=Msa0679130-mRNA-1
chr4_4	exon	36620686	36620748	36620686	ID=Msa0679130-mRNA-1:exon:8602;Parent=Msa0679130-mRNA-1
chr4_4	exon	36622101	36622418	36622101	ID=Msa0679130-mRNA-1:exon:8603;Parent=Msa0679130-mRNA-1
chr4_4	CDS	36618403	36618539	36618403	ID=Msa0679130-mRNA-1:cds;Parent=Msa0679130-mRNA-1
chr4_4	CDS	36618549	36618714	36618549	ID=Msa0679130-mRNA-1:cds;Parent=Msa0679130-mRNA-1
chr4_4	CDS	36620686	36620748	36620686	ID=Msa0679130-mRNA-1:cds;Parent=Msa0679130-mRNA-1
chr4_4	CDS	36622101	36622334	36622101	ID=Msa0679130-mRNA-1:cds;Parent=Msa0679130-mRNA-1
chr4_4	three_prime_UTR	36622335	36622418	36622335	ID=Msa0679130-mRNA-1:three_prime_utr;Parent=Msa0679130-mRNA-1

Gene Sequence

>Msa0679130

ATGTATACAAACTTCAACATCACATTCTCCACCACGCCTGATATGCAGCAGCACAACCACATCGGTGAATACGAGTCTGTCCCACAGCTCAACTCTGGTGGTGGTGGTGGTGGAAATTATAATAGCTGTAGCAGCGGCTACTTGGGGTCGCCGGACCGATTGATACAGAGGAGCATTAGTAGCCACTCTCTGCAAAAGAATGATGTGCCACACCACCACCCTTTTTCTTCTTTGTTTGCTGAATTGCTTGATCAAGAAAATGGTCCGGTCCGGCGAGTTTACAGTACTGGTGATCTTGATCAGAGTAACATGATCATAGAAGAAATGAGCAGAGCAGCCAGTCCTTACAGCCCAGAGGAAAAGAAGTATGTTTGTAGGAAGACATTGGCAGACAGTAGGCCACGTATTAGAGGGAGATTTGCTAAGAATGATGAAATTGTAATGAATCCACCAAATCAATGGAGCCATATTAATAATGGAGAGGAATTAGAAGATGAGGAAGAAAAGAATTGGGACAGTTTATTTGATACATTGGTTCCTACTCCAAATCTTGCTCATGACGAGTCTCCCCATAGTTCCTCATATAGTGTCTTGTATTAA

Protein sequence

>Msa0679130

MYTNFNITFSTTPDMQQHNHIGEYESVPQLNSGGGGGGNYNSCSSGYLGSPDRLIQRSISSHSLQKNDVPHHHPFSSLFAELLDQENGPVRRVYSTGDLDQSNMIIEEMSRAASPYSPEEKKYVCRKTLADSRPRIRGRFAKNDEIVMNPPNQWSHINNGEELEDEEEKNWDSLFDTLVPTPNLAHDESPHSSSYSVLY*