Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680260 | XP_013455733.1 | 79.583 | 240 | 39 | 4 | 1 | 236 | 1 | 234 | 3.56e-120 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680260 | sp|Q9FKK2|AGL62_ARATH | 28.879 | 232 | 128 | 10 | 7 | 236 | 5 | 201 | 2.89e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680260 | A0A072UJ33 | 79.583 | 240 | 39 | 4 | 1 | 236 | 1 | 234 | 1.70e-120 | 352 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0680260 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680260 | MtrunA17_Chr4g0025531 | 79.583 | 240 | 39 | 4 | 1 | 236 | 1 | 234 | 3.28e-124 | 352 |
| Msa0680260 | MtrunA17_Chr3g0135891 | 51.128 | 133 | 43 | 4 | 106 | 222 | 16 | 142 | 2.92e-32 | 115 |
| Msa0680260 | MtrunA17_Chr5g0422941 | 24.696 | 247 | 150 | 6 | 1 | 226 | 1 | 232 | 2.76e-17 | 78.2 |
| Msa0680260 | MtrunA17_Chr1g0208561 | 27.811 | 169 | 109 | 2 | 1 | 159 | 1 | 166 | 3.55e-16 | 74.7 |
| Msa0680260 | MtrunA17_Chr8g0355091 | 38.043 | 92 | 57 | 0 | 1 | 92 | 1 | 92 | 4.61e-16 | 74.7 |
| Msa0680260 | MtrunA17_Chr2g0317481 | 24.370 | 238 | 162 | 5 | 1 | 226 | 1 | 232 | 7.13e-16 | 74.3 |
| Msa0680260 | MtrunA17_Chr3g0099421 | 28.249 | 177 | 111 | 3 | 1 | 164 | 26 | 199 | 9.50e-16 | 74.3 |
| Msa0680260 | MtrunA17_Chr3g0099411 | 38.043 | 92 | 57 | 0 | 1 | 92 | 1 | 92 | 1.00e-15 | 73.6 |
| Msa0680260 | MtrunA17_Chr3g0119901 | 43.529 | 85 | 47 | 1 | 1 | 85 | 1 | 84 | 1.09e-15 | 73.2 |
| Msa0680260 | MtrunA17_Chr1g0206701 | 38.043 | 92 | 57 | 0 | 1 | 92 | 1 | 92 | 1.12e-15 | 73.6 |
| Msa0680260 | MtrunA17_Chr1g0206721 | 38.043 | 92 | 57 | 0 | 1 | 92 | 1 | 92 | 1.36e-15 | 73.6 |
| Msa0680260 | MtrunA17_Chr1g0149391 | 43.056 | 72 | 41 | 0 | 1 | 72 | 1 | 72 | 1.68e-15 | 73.2 |
| Msa0680260 | MtrunA17_Chr2g0292791 | 38.043 | 92 | 57 | 0 | 1 | 92 | 1 | 92 | 2.60e-15 | 72.8 |
| Msa0680260 | MtrunA17_Chr3g0089141 | 35.870 | 92 | 59 | 0 | 1 | 92 | 1 | 92 | 3.31e-15 | 72.4 |
| Msa0680260 | MtrunA17_Chr1g0206991 | 41.026 | 78 | 46 | 0 | 1 | 78 | 1 | 78 | 3.34e-15 | 71.2 |
| Msa0680260 | MtrunA17_Chr8g0379021 | 29.114 | 158 | 105 | 2 | 4 | 156 | 7 | 162 | 3.60e-15 | 71.2 |
| Msa0680260 | MtrunA17_Chr5g0422421 | 36.364 | 88 | 56 | 0 | 1 | 88 | 1 | 88 | 4.10e-15 | 72.0 |
| Msa0680260 | MtrunA17_Chr1g0208581 | 40.260 | 77 | 46 | 0 | 1 | 77 | 1 | 77 | 4.17e-15 | 72.0 |
| Msa0680260 | MtrunA17_Chr1g0188671 | 39.024 | 82 | 50 | 0 | 1 | 82 | 39 | 120 | 5.80e-15 | 72.4 |
| Msa0680260 | MtrunA17_Chr2g0317451 | 38.961 | 77 | 47 | 0 | 1 | 77 | 1 | 77 | 6.44e-15 | 71.6 |
| Msa0680260 | MtrunA17_Chr3g0085241 | 43.902 | 82 | 45 | 1 | 4 | 85 | 36 | 116 | 7.74e-15 | 71.6 |
| Msa0680260 | MtrunA17_Chr5g0419601 | 38.961 | 77 | 47 | 0 | 1 | 77 | 1 | 77 | 8.84e-14 | 68.6 |
| Msa0680260 | MtrunA17_Chr2g0325971 | 33.696 | 92 | 61 | 0 | 1 | 92 | 1 | 92 | 1.05e-13 | 68.2 |
| Msa0680260 | MtrunA17_Chr2g0300421 | 32.609 | 92 | 62 | 0 | 1 | 92 | 1 | 92 | 1.97e-13 | 66.2 |
| Msa0680260 | MtrunA17_Chr1g0187361 | 32.609 | 92 | 62 | 0 | 1 | 92 | 1 | 92 | 2.09e-13 | 67.4 |
| Msa0680260 | MtrunA17_Chr2g0333981 | 27.879 | 165 | 105 | 5 | 4 | 156 | 7 | 169 | 4.62e-13 | 65.5 |
| Msa0680260 | MtrunA17_Chr4g0052081 | 37.143 | 70 | 44 | 0 | 9 | 78 | 2 | 71 | 4.89e-13 | 65.5 |
| Msa0680260 | MtrunA17_Chr3g0089151 | 37.500 | 72 | 45 | 0 | 1 | 72 | 1 | 72 | 7.66e-13 | 63.5 |
| Msa0680260 | MtrunA17_Chr4g0052061 | 37.500 | 72 | 45 | 0 | 9 | 80 | 2 | 73 | 8.79e-13 | 64.3 |
| Msa0680260 | MtrunA17_Chr2g0300441 | 27.108 | 166 | 102 | 3 | 1 | 150 | 1 | 163 | 3.49e-12 | 63.9 |
| Msa0680260 | MtrunA17_Chr3g0111841 | 44.828 | 58 | 32 | 0 | 15 | 72 | 2 | 59 | 7.02e-12 | 59.3 |
| Msa0680260 | MtrunA17_Chr8g0376821 | 32.500 | 80 | 53 | 1 | 9 | 87 | 2 | 81 | 3.97e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680260 | AT1G29962.1 | 43.750 | 80 | 44 | 1 | 1 | 80 | 1 | 79 | 3.82e-16 | 74.3 |
| Msa0680260 | AT4G36590.1 | 44.118 | 68 | 38 | 0 | 5 | 72 | 3 | 70 | 1.24e-15 | 74.3 |
| Msa0680260 | AT5G60440.1 | 28.879 | 232 | 128 | 10 | 7 | 236 | 5 | 201 | 2.94e-14 | 70.9 |
| Msa0680260 | AT2G34440.1 | 38.272 | 81 | 48 | 1 | 9 | 87 | 2 | 82 | 4.53e-14 | 68.6 |
| Msa0680260 | AT2G24840.1 | 41.558 | 77 | 45 | 0 | 7 | 83 | 61 | 137 | 5.94e-14 | 69.7 |
| Msa0680260 | AT1G28460.1 | 42.308 | 78 | 44 | 1 | 1 | 78 | 1 | 77 | 2.00e-13 | 67.0 |
| Msa0680260 | AT1G01530.1 | 34.694 | 98 | 60 | 1 | 5 | 98 | 3 | 100 | 3.46e-12 | 64.7 |
| Msa0680260 | AT3G04100.1 | 35.294 | 85 | 52 | 1 | 2 | 86 | 7 | 88 | 1.33e-11 | 62.4 |
| Msa0680260 | AT3G66656.1 | 40.000 | 65 | 39 | 0 | 9 | 73 | 2 | 66 | 2.09e-11 | 61.2 |
| Msa0680260 | AT1G28450.1 | 38.750 | 80 | 48 | 1 | 1 | 80 | 1 | 79 | 2.47e-11 | 61.2 |
Find 43 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGAGTTAACAACACTTTC+AGG | 0.202264 | 4_4:-39249276 | Msa0680260:CDS |
| TTGAAGATGTTGGAAAGTTC+TGG | 0.270990 | 4_4:-39249045 | Msa0680260:CDS |
| ATCATTTCCTCTTCTGTTGA+AGG | 0.293016 | 4_4:+39249150 | None:intergenic |
| TGTTTATCTGATCATATATC+TGG | 0.321316 | 4_4:+39248423 | None:intergenic |
| ACACAAGGAGTCAACCTTAT+TGG | 0.323352 | 4_4:-39248486 | Msa0680260:CDS |
| GATGGTTCTCCATAACAAAA+TGG | 0.328060 | 4_4:+39249213 | None:intergenic |
| TTTCTTTCACTTGATCATAT+TGG | 0.336690 | 4_4:+39248986 | None:intergenic |
| ATCCTCCGCTTGCACCAATA+AGG | 0.357163 | 4_4:+39248472 | None:intergenic |
| AGAAGAGGAAATGATGAAAC+TGG | 0.357197 | 4_4:-39249142 | Msa0680260:CDS |
| ATTCTCATGCTTTCTCCAAC+AGG | 0.360964 | 4_4:-39249240 | Msa0680260:CDS |
| ATTGGTGCAAGCGGAGGATA+TGG | 0.361451 | 4_4:-39248468 | Msa0680260:CDS |
| TGTTGGAAAGTTCTGGATAT+TGG | 0.391346 | 4_4:-39249038 | Msa0680260:CDS |
| TTTGTTATAGATTCAGAAGA+TGG | 0.420510 | 4_4:+39249195 | None:intergenic |
| TTTATTTGCGACAGCAACTA+AGG | 0.428054 | 4_4:+39248954 | None:intergenic |
| GCATTTACAACGAGAAAGTC+TGG | 0.455029 | 4_4:-39249315 | Msa0680260:CDS |
| TTTCCTCTTGATGGCCTCTT+CGG | 0.457920 | 4_4:+39249387 | None:intergenic |
| TTGATGTCCTCAATGACATA+AGG | 0.468063 | 4_4:+39248721 | None:intergenic |
| TAACAAAATGGTTTCCCTGT+TGG | 0.468914 | 4_4:+39249225 | None:intergenic |
| CTGAGTTAACAACACTTTCA+GGG | 0.482866 | 4_4:-39249275 | Msa0680260:CDS |
| ATCAACAAAGATCATGAAGT+TGG | 0.522438 | 4_4:-39248703 | Msa0680260:CDS |
| TTATCCAAAAGGTAAAGGTA+TGG | 0.531949 | 4_4:-39248535 | Msa0680260:intron |
| TGTGTTTCTATATCATGAGA+AGG | 0.540228 | 4_4:+39248504 | None:intergenic |
| GACTCCATTCAGTTCCTCGA+TGG | 0.554069 | 4_4:+39248756 | None:intergenic |
| TGAAAATCCTTCAACAGAAG+AGG | 0.558587 | 4_4:-39249157 | Msa0680260:CDS |
| AAATCCTCCTTATGTCATTG+AGG | 0.570912 | 4_4:-39248728 | Msa0680260:CDS |
| TCTACCATCGAGGAACTGAA+TGG | 0.572587 | 4_4:-39248760 | Msa0680260:CDS |
| GTCAACCTTATTGGTGCAAG+CGG | 0.586884 | 4_4:-39248477 | Msa0680260:CDS |
| AACCTTATTGGTGCAAGCGG+AGG | 0.596051 | 4_4:-39248474 | Msa0680260:CDS |
| TCCAAAAGGTAAAGGTATGG+TGG | 0.601173 | 4_4:-39248532 | Msa0680260:intron |
| GAGTAAGAATGGCGCCGAAG+AGG | 0.604647 | 4_4:-39249401 | None:intergenic |
| TTCTCATGCTTTCTCCAACA+GGG | 0.606213 | 4_4:-39249239 | Msa0680260:CDS |
| TGAGTTAACAACACTTTCAG+GGG | 0.607847 | 4_4:-39249274 | Msa0680260:CDS |
| ATGTCCTCAATGACATAAGG+AGG | 0.622929 | 4_4:+39248724 | None:intergenic |
| TGGATATTGGTCGATACAAG+AGG | 0.628309 | 4_4:-39249025 | Msa0680260:CDS |
| GCAAGCGGAGGATATGGAAG+TGG | 0.633800 | 4_4:-39248462 | Msa0680260:CDS |
| GCGCCGAAGAGGCCATCAAG+AGG | 0.648337 | 4_4:-39249390 | Msa0680260:CDS |
| TGTAGTAATTTCTACCATCG+AGG | 0.654680 | 4_4:-39248770 | Msa0680260:intron |
| TGAAAGTGTTGTTAACTCAG+AGG | 0.669188 | 4_4:+39249278 | None:intergenic |
| GGAGGAGAGCTTAACCCTCG+TGG | 0.693010 | 4_4:-39248907 | Msa0680260:intron |
| AAGATGAACACTTACCACGA+GGG | 0.703390 | 4_4:+39248893 | None:intergenic |
| AAGCATGAGAATATCAACTG+AGG | 0.718686 | 4_4:+39249251 | None:intergenic |
| TCTCATGATATAGAAACACA+AGG | 0.726046 | 4_4:-39248501 | Msa0680260:CDS |
| AAAGTCTGGAATTTACAACA+AGG | 0.757794 | 4_4:-39249301 | Msa0680260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAACATTAAAAC+CGG | + | chr4_4:39249170-39249189 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAACATTAAAAC+CGG | + | chr4_4:39249170-39249189 | None:intergenic | 10.0% |
| !! | ATAAATAATGTCTTGAAAAA+TGG | - | chr4_4:39248899-39248918 | Msa0680260:intron | 15.0% |
| !! | CTTAAAATAATTAGACAAAA+AGG | + | chr4_4:39249017-39249036 | None:intergenic | 15.0% |
| !! | ATAAATAATGTCTTGAAAAA+TGG | - | chr4_4:39248899-39248918 | Msa0680260:intron | 15.0% |
| !! | CTTAAAATAATTAGACAAAA+AGG | + | chr4_4:39249017-39249036 | None:intergenic | 15.0% |
| !! | TGAAAAAAATGATGATCATT+TGG | - | chr4_4:39248724-39248743 | Msa0680260:CDS | 20.0% |
| !! | ATGTAAAAATTTGAAGATGT+TGG | - | chr4_4:39248772-39248791 | Msa0680260:intron | 20.0% |
| !!! | CTAATTATTTTAAGTGAATC+TGG | - | chr4_4:39249023-39249042 | Msa0680260:CDS | 20.0% |
| !!! | TTCAATCTTTTTTATCCAAA+AGG | - | chr4_4:39249281-39249300 | Msa0680260:CDS | 20.0% |
| !! | TGAAAAAAATGATGATCATT+TGG | - | chr4_4:39248724-39248743 | Msa0680260:CDS | 20.0% |
| !! | ATGTAAAAATTTGAAGATGT+TGG | - | chr4_4:39248772-39248791 | Msa0680260:intron | 20.0% |
| !!! | CTAATTATTTTAAGTGAATC+TGG | - | chr4_4:39249023-39249042 | Msa0680260:CDS | 20.0% |
| !!! | TTCAATCTTTTTTATCCAAA+AGG | - | chr4_4:39249281-39249300 | Msa0680260:CDS | 20.0% |
| !! | TTTGTTATAGATTCAGAAGA+TGG | + | chr4_4:39248635-39248654 | None:intergenic | 25.0% |
| ! | TTTCTTTCACTTGATCATAT+TGG | + | chr4_4:39248844-39248863 | None:intergenic | 25.0% |
| ! | AATAATGTCTTGAAAAATGG+AGG | - | chr4_4:39248902-39248921 | Msa0680260:intron | 25.0% |
| !!! | TTTTTTGCTTGACATTTACT+AGG | - | chr4_4:39249184-39249203 | Msa0680260:CDS | 25.0% |
| ! | AAAAAGATTGAATCCATGAA+AGG | + | chr4_4:39249273-39249292 | None:intergenic | 25.0% |
| !!! | CTTTTTTATCCAAAAGGTAA+AGG | - | chr4_4:39249287-39249306 | Msa0680260:CDS | 25.0% |
| !! | TTTGTTATAGATTCAGAAGA+TGG | + | chr4_4:39248635-39248654 | None:intergenic | 25.0% |
| ! | TTTCTTTCACTTGATCATAT+TGG | + | chr4_4:39248844-39248863 | None:intergenic | 25.0% |
| ! | AATAATGTCTTGAAAAATGG+AGG | - | chr4_4:39248902-39248921 | Msa0680260:intron | 25.0% |
| !!! | TTTTTTGCTTGACATTTACT+AGG | - | chr4_4:39249184-39249203 | Msa0680260:CDS | 25.0% |
| ! | AAAAAGATTGAATCCATGAA+AGG | + | chr4_4:39249273-39249292 | None:intergenic | 25.0% |
| !!! | CTTTTTTATCCAAAAGGTAA+AGG | - | chr4_4:39249287-39249306 | Msa0680260:CDS | 25.0% |
| !!! | ACTTTTTGTTTTCCTCTTGA+TGG | + | chr4_4:39248452-39248471 | None:intergenic | 30.0% |
| ! | AAAGTCTGGAATTTACAACA+AGG | - | chr4_4:39248526-39248545 | Msa0680260:CDS | 30.0% |
| ! | TTTGGATAAAAAGCATGTTG+CGG | - | chr4_4:39248742-39248761 | Msa0680260:CDS | 30.0% |
| ATCAACAAAGATCATGAAGT+TGG | - | chr4_4:39249124-39249143 | Msa0680260:CDS | 30.0% | |
| TTATCCAAAAGGTAAAGGTA+TGG | - | chr4_4:39249292-39249311 | Msa0680260:CDS | 30.0% | |
| ! | TGTGTTTCTATATCATGAGA+AGG | + | chr4_4:39249326-39249345 | None:intergenic | 30.0% |
| TCTCATGATATAGAAACACA+AGG | - | chr4_4:39249326-39249345 | Msa0680260:CDS | 30.0% | |
| !!! | ACTTTTTGTTTTCCTCTTGA+TGG | + | chr4_4:39248452-39248471 | None:intergenic | 30.0% |
| ! | AAAGTCTGGAATTTACAACA+AGG | - | chr4_4:39248526-39248545 | Msa0680260:CDS | 30.0% |
| ! | TTTGGATAAAAAGCATGTTG+CGG | - | chr4_4:39248742-39248761 | Msa0680260:CDS | 30.0% |
| ATCAACAAAGATCATGAAGT+TGG | - | chr4_4:39249124-39249143 | Msa0680260:CDS | 30.0% | |
| TTATCCAAAAGGTAAAGGTA+TGG | - | chr4_4:39249292-39249311 | Msa0680260:CDS | 30.0% | |
| ! | TGTGTTTCTATATCATGAGA+AGG | + | chr4_4:39249326-39249345 | None:intergenic | 30.0% |
| TCTCATGATATAGAAACACA+AGG | - | chr4_4:39249326-39249345 | Msa0680260:CDS | 30.0% | |
| !! | TGAAAGTGTTGTTAACTCAG+AGG | + | chr4_4:39248552-39248571 | None:intergenic | 35.0% |
| TCTGAGTTAACAACACTTTC+AGG | - | chr4_4:39248551-39248570 | Msa0680260:intron | 35.0% | |
| CTGAGTTAACAACACTTTCA+GGG | - | chr4_4:39248552-39248571 | Msa0680260:intron | 35.0% | |
| TGAGTTAACAACACTTTCAG+GGG | - | chr4_4:39248553-39248572 | Msa0680260:intron | 35.0% | |
| AAGCATGAGAATATCAACTG+AGG | + | chr4_4:39248579-39248598 | None:intergenic | 35.0% | |
| TAACAAAATGGTTTCCCTGT+TGG | + | chr4_4:39248605-39248624 | None:intergenic | 35.0% | |
| ! | ACAGGGAAACCATTTTGTTA+TGG | - | chr4_4:39248605-39248624 | Msa0680260:intron | 35.0% |
| GATGGTTCTCCATAACAAAA+TGG | + | chr4_4:39248617-39248636 | None:intergenic | 35.0% | |
| TGAAAATCCTTCAACAGAAG+AGG | - | chr4_4:39248670-39248689 | Msa0680260:intron | 35.0% | |
| ATCATTTCCTCTTCTGTTGA+AGG | + | chr4_4:39248680-39248699 | None:intergenic | 35.0% | |
| AGAAGAGGAAATGATGAAAC+TGG | - | chr4_4:39248685-39248704 | Msa0680260:intron | 35.0% | |
| TTGAAGATGTTGGAAAGTTC+TGG | - | chr4_4:39248782-39248801 | Msa0680260:intron | 35.0% | |
| !! | TGTTGGAAAGTTCTGGATAT+TGG | - | chr4_4:39248789-39248808 | Msa0680260:intron | 35.0% |
| TTTATTTGCGACAGCAACTA+AGG | + | chr4_4:39248876-39248895 | None:intergenic | 35.0% | |
| TGTAGTAATTTCTACCATCG+AGG | - | chr4_4:39249057-39249076 | Msa0680260:CDS | 35.0% | |
| AAATCCTCCTTATGTCATTG+AGG | - | chr4_4:39249099-39249118 | Msa0680260:CDS | 35.0% | |
| TTGATGTCCTCAATGACATA+AGG | + | chr4_4:39249109-39249128 | None:intergenic | 35.0% | |
| GCAAGTAAGAATTCTCATTC+CGG | - | chr4_4:39249148-39249167 | Msa0680260:CDS | 35.0% | |
| ATGTATTGTCGTTCCTTTCA+TGG | - | chr4_4:39249257-39249276 | Msa0680260:CDS | 35.0% | |
| !! | TGAAAGTGTTGTTAACTCAG+AGG | + | chr4_4:39248552-39248571 | None:intergenic | 35.0% |
| TCTGAGTTAACAACACTTTC+AGG | - | chr4_4:39248551-39248570 | Msa0680260:intron | 35.0% | |
| CTGAGTTAACAACACTTTCA+GGG | - | chr4_4:39248552-39248571 | Msa0680260:intron | 35.0% | |
| TGAGTTAACAACACTTTCAG+GGG | - | chr4_4:39248553-39248572 | Msa0680260:intron | 35.0% | |
| AAGCATGAGAATATCAACTG+AGG | + | chr4_4:39248579-39248598 | None:intergenic | 35.0% | |
| TAACAAAATGGTTTCCCTGT+TGG | + | chr4_4:39248605-39248624 | None:intergenic | 35.0% | |
| ! | ACAGGGAAACCATTTTGTTA+TGG | - | chr4_4:39248605-39248624 | Msa0680260:intron | 35.0% |
| GATGGTTCTCCATAACAAAA+TGG | + | chr4_4:39248617-39248636 | None:intergenic | 35.0% | |
| TGAAAATCCTTCAACAGAAG+AGG | - | chr4_4:39248670-39248689 | Msa0680260:intron | 35.0% | |
| ATCATTTCCTCTTCTGTTGA+AGG | + | chr4_4:39248680-39248699 | None:intergenic | 35.0% | |
| AGAAGAGGAAATGATGAAAC+TGG | - | chr4_4:39248685-39248704 | Msa0680260:intron | 35.0% | |
| TTGAAGATGTTGGAAAGTTC+TGG | - | chr4_4:39248782-39248801 | Msa0680260:intron | 35.0% | |
| !! | TGTTGGAAAGTTCTGGATAT+TGG | - | chr4_4:39248789-39248808 | Msa0680260:intron | 35.0% |
| TTTATTTGCGACAGCAACTA+AGG | + | chr4_4:39248876-39248895 | None:intergenic | 35.0% | |
| TGTAGTAATTTCTACCATCG+AGG | - | chr4_4:39249057-39249076 | Msa0680260:CDS | 35.0% | |
| AAATCCTCCTTATGTCATTG+AGG | - | chr4_4:39249099-39249118 | Msa0680260:CDS | 35.0% | |
| TTGATGTCCTCAATGACATA+AGG | + | chr4_4:39249109-39249128 | None:intergenic | 35.0% | |
| GCAAGTAAGAATTCTCATTC+CGG | - | chr4_4:39249148-39249167 | Msa0680260:CDS | 35.0% | |
| ATGTATTGTCGTTCCTTTCA+TGG | - | chr4_4:39249257-39249276 | Msa0680260:CDS | 35.0% | |
| GCATTTACAACGAGAAAGTC+TGG | - | chr4_4:39248512-39248531 | Msa0680260:CDS | 40.0% | |
| ATTCTCATGCTTTCTCCAAC+AGG | - | chr4_4:39248587-39248606 | Msa0680260:intron | 40.0% | |
| TTCTCATGCTTTCTCCAACA+GGG | - | chr4_4:39248588-39248607 | Msa0680260:intron | 40.0% | |
| TGGATATTGGTCGATACAAG+AGG | - | chr4_4:39248802-39248821 | Msa0680260:intron | 40.0% | |
| AAGATGAACACTTACCACGA+GGG | + | chr4_4:39248937-39248956 | None:intergenic | 40.0% | |
| ATGTCCTCAATGACATAAGG+AGG | + | chr4_4:39249106-39249125 | None:intergenic | 40.0% | |
| ! | TCCAAAAGGTAAAGGTATGG+TGG | - | chr4_4:39249295-39249314 | Msa0680260:CDS | 40.0% |
| ACACAAGGAGTCAACCTTAT+TGG | - | chr4_4:39249341-39249360 | Msa0680260:CDS | 40.0% | |
| GCATTTACAACGAGAAAGTC+TGG | - | chr4_4:39248512-39248531 | Msa0680260:CDS | 40.0% | |
| ATTCTCATGCTTTCTCCAAC+AGG | - | chr4_4:39248587-39248606 | Msa0680260:intron | 40.0% | |
| TTCTCATGCTTTCTCCAACA+GGG | - | chr4_4:39248588-39248607 | Msa0680260:intron | 40.0% | |
| TGGATATTGGTCGATACAAG+AGG | - | chr4_4:39248802-39248821 | Msa0680260:intron | 40.0% | |
| AAGATGAACACTTACCACGA+GGG | + | chr4_4:39248937-39248956 | None:intergenic | 40.0% | |
| ATGTCCTCAATGACATAAGG+AGG | + | chr4_4:39249106-39249125 | None:intergenic | 40.0% | |
| ! | TCCAAAAGGTAAAGGTATGG+TGG | - | chr4_4:39249295-39249314 | Msa0680260:CDS | 40.0% |
| ACACAAGGAGTCAACCTTAT+TGG | - | chr4_4:39249341-39249360 | Msa0680260:CDS | 40.0% | |
| ! | TTTCCTCTTGATGGCCTCTT+CGG | + | chr4_4:39248443-39248462 | None:intergenic | 45.0% |
| GAAGATGAACACTTACCACG+AGG | + | chr4_4:39248938-39248957 | None:intergenic | 45.0% | |
| TCTACCATCGAGGAACTGAA+TGG | - | chr4_4:39249067-39249086 | Msa0680260:CDS | 45.0% | |
| ! | GCCACCATACCTTTACCTTT+TGG | + | chr4_4:39249299-39249318 | None:intergenic | 45.0% |
| GTCAACCTTATTGGTGCAAG+CGG | - | chr4_4:39249350-39249369 | Msa0680260:CDS | 45.0% | |
| ! | TTTCCTCTTGATGGCCTCTT+CGG | + | chr4_4:39248443-39248462 | None:intergenic | 45.0% |
| GAAGATGAACACTTACCACG+AGG | + | chr4_4:39248938-39248957 | None:intergenic | 45.0% | |
| TCTACCATCGAGGAACTGAA+TGG | - | chr4_4:39249067-39249086 | Msa0680260:CDS | 45.0% | |
| ! | GCCACCATACCTTTACCTTT+TGG | + | chr4_4:39249299-39249318 | None:intergenic | 45.0% |
| GTCAACCTTATTGGTGCAAG+CGG | - | chr4_4:39249350-39249369 | Msa0680260:CDS | 45.0% | |
| GACTCCATTCAGTTCCTCGA+TGG | + | chr4_4:39249074-39249093 | None:intergenic | 50.0% | |
| AACCTTATTGGTGCAAGCGG+AGG | - | chr4_4:39249353-39249372 | Msa0680260:CDS | 50.0% | |
| ATCCTCCGCTTGCACCAATA+AGG | + | chr4_4:39249358-39249377 | None:intergenic | 50.0% | |
| ATTGGTGCAAGCGGAGGATA+TGG | - | chr4_4:39249359-39249378 | Msa0680260:CDS | 50.0% | |
| GACTCCATTCAGTTCCTCGA+TGG | + | chr4_4:39249074-39249093 | None:intergenic | 50.0% | |
| AACCTTATTGGTGCAAGCGG+AGG | - | chr4_4:39249353-39249372 | Msa0680260:CDS | 50.0% | |
| ATCCTCCGCTTGCACCAATA+AGG | + | chr4_4:39249358-39249377 | None:intergenic | 50.0% | |
| ATTGGTGCAAGCGGAGGATA+TGG | - | chr4_4:39249359-39249378 | Msa0680260:CDS | 50.0% | |
| GCAAGCGGAGGATATGGAAG+TGG | - | chr4_4:39249365-39249384 | Msa0680260:CDS | 55.0% | |
| GCAAGCGGAGGATATGGAAG+TGG | - | chr4_4:39249365-39249384 | Msa0680260:CDS | 55.0% | |
| GGAGGAGAGCTTAACCCTCG+TGG | - | chr4_4:39248920-39248939 | Msa0680260:CDS | 60.0% | |
| GGAGGAGAGCTTAACCCTCG+TGG | - | chr4_4:39248920-39248939 | Msa0680260:CDS | 60.0% | |
| GCGCCGAAGAGGCCATCAAG+AGG | - | chr4_4:39248437-39248456 | Msa0680260:CDS | 65.0% | |
| GCGCCGAAGAGGCCATCAAG+AGG | - | chr4_4:39248437-39248456 | Msa0680260:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 39248434 | 39249415 | 39248434 | ID=Msa0680260;Name=Msa0680260 |
| chr4_4 | mRNA | 39248434 | 39249415 | 39248434 | ID=Msa0680260-mRNA-1;Parent=Msa0680260;Name=Msa0680260-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|3|0|236 |
| chr4_4 | exon | 39248908 | 39249415 | 39248908 | ID=Msa0680260-mRNA-1:exon:9244;Parent=Msa0680260-mRNA-1 |
| chr4_4 | exon | 39248698 | 39248787 | 39248698 | ID=Msa0680260-mRNA-1:exon:9243;Parent=Msa0680260-mRNA-1 |
| chr4_4 | exon | 39248434 | 39248546 | 39248434 | ID=Msa0680260-mRNA-1:exon:9242;Parent=Msa0680260-mRNA-1 |
| chr4_4 | CDS | 39248908 | 39249415 | 39248908 | ID=Msa0680260-mRNA-1:cds;Parent=Msa0680260-mRNA-1 |
| chr4_4 | CDS | 39248698 | 39248787 | 39248698 | ID=Msa0680260-mRNA-1:cds;Parent=Msa0680260-mRNA-1 |
| chr4_4 | CDS | 39248434 | 39248546 | 39248434 | ID=Msa0680260-mRNA-1:cds;Parent=Msa0680260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
