AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0680290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0680290 MtrunA17_Chr4g0026311 92.857 140 4 1 1 134 1 140 1.26e-88 253
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0680290 AT2G27470.1 68.132 91 29 0 4 94 8 98 6.74e-41 137

Find 72 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATTGGGATTTGGAATT+AGG 0.045058 4_4:+39317659 None:intergenic
TAATTGGGATAATTGGAATT+AGG 0.162461 4_4:+39317634 None:intergenic
TTCTCATCTCCCTTTCCTTT+TGG 0.216918 4_4:+39316100 None:intergenic
AATTGGGATAATTGGAATTA+GGG 0.260536 4_4:+39317635 None:intergenic
TGAATTGGGATTTGGAATTA+GGG 0.307073 4_4:+39317660 None:intergenic
TTTGTGCTTGTTGTCGCTAA+TGG 0.310013 4_4:+39317688 None:intergenic
ATCATTTGACTGCAGGGAAT+TGG 0.319612 4_4:+39315658 None:intergenic
TTAGGGTTTGAATTGGGATT+TGG 0.328082 4_4:+39317652 None:intergenic
GAGCCGAGACATAAAACTTT+AGG 0.330270 4_4:-39315967 Msa0680290:three_prime_UTR
CCTCACCCAGTTCATTTCAT+TGG 0.336462 4_4:+39316017 None:intergenic
CAAGAAGCTAAGTGGTGATA+TGG 0.339952 4_4:-39317724 Msa0680290:five_prime_UTR
ATACATAATTCCTTGTCATT+TGG 0.343023 4_4:-39315931 Msa0680290:three_prime_UTR
AATGAAGATTCTGGCACTTT+CGG 0.351884 4_4:+39317468 None:intergenic
TGAGCAGTTCTTTGTGAATT+CGG 0.372929 4_4:-39315776 Msa0680290:three_prime_UTR
CTTCCTTCCATCAGGGTTAG+TGG 0.376100 4_4:+39315829 None:intergenic
TTGTGCTTGTTGTCGCTAAT+GGG 0.376582 4_4:+39317689 None:intergenic
ATTGGAATTAGGGTTTGAAT+TGG 0.378805 4_4:+39317645 None:intergenic
CCTAAAAGCTTCCTTCCATC+AGG 0.379150 4_4:+39315821 None:intergenic
GAAGGCGAGCCGTCTGATAA+AGG 0.396478 4_4:-39316058 Msa0680290:CDS
CTGAGTTTACTGAGTTTGTT+GGG 0.403574 4_4:-39316879 Msa0680290:CDS
AAGGTAGTGAATGAAGATTC+TGG 0.404686 4_4:+39317459 None:intergenic
TTGTCTATGTATATTATGTT+TGG 0.405519 4_4:-39315594 Msa0680290:three_prime_UTR
CCTTCAAGAGAATCTCTTAG+AGG 0.417963 4_4:+39316856 None:intergenic
ATACATAGACAACATGATAA+AGG 0.420535 4_4:+39315605 None:intergenic
TGAATTCGGTTATGAATGTC+TGG 0.427835 4_4:-39315762 Msa0680290:three_prime_UTR
TTGGAATTAGGGTTTGAATT+GGG 0.434343 4_4:+39317646 None:intergenic
TGATGACCAATGAAATGAAC+TGG 0.451422 4_4:-39316023 Msa0680290:exon
ACTGAGTTTACTGAGTTTGT+TGG 0.453686 4_4:-39316880 Msa0680290:CDS
CCTCTAAGAGATTCTCTTGA+AGG 0.461779 4_4:-39316856 Msa0680290:intron
TCATAACATCATTTGACTGC+AGG 0.472789 4_4:+39315651 None:intergenic
AGCGGCAGTGCCAAAAGGAA+AGG 0.481373 4_4:-39316110 Msa0680290:CDS
GCAGGGCTAATGATATATGT+AGG 0.482928 4_4:-39316957 Msa0680290:intron
AACGGCAATGTCGCCGTCGT+CGG 0.485500 4_4:+39317516 None:intergenic
ATCGACAATGGCTGAGGCGG+AGG 0.486553 4_4:-39317593 Msa0680290:exon
TATCGTACGCCGTGTGGTGA+AGG 0.496035 4_4:-39317557 Msa0680290:CDS
TACATAGTTAACTAGTACGC+AGG 0.504865 4_4:+39315905 None:intergenic
GTCGCCGTCGTCGGAGCAAG+TGG 0.510785 4_4:+39317525 None:intergenic
TCAAATTTGTTGCAGCATTG+AGG 0.516386 4_4:+39315731 None:intergenic
ATGTATATTATGTTTGGATG+AGG 0.517268 4_4:-39315588 Msa0680290:three_prime_UTR
GAGAAAATCGACAATGGCTG+AGG 0.540596 4_4:-39317599 Msa0680290:exon
TGAGAAGGGAAAGAAAAGAA+AGG 0.540607 4_4:-39316083 Msa0680290:CDS
AAAAGGAAAGGGAGATGAGA+AGG 0.549945 4_4:-39316098 Msa0680290:CDS
CAAGTACTTACGTAGCAGAA+AGG 0.553485 4_4:+39317440 None:intergenic
CAGGGCTAATGATATATGTA+GGG 0.556080 4_4:-39316956 Msa0680290:CDS
CTAAAAGCTTCCTTCCATCA+GGG 0.559834 4_4:+39315822 None:intergenic
AAGAAAGCGGCAGTGCCAAA+AGG 0.559929 4_4:-39316115 Msa0680290:CDS
GCGGCAGTGCCAAAAGGAAA+GGG 0.560436 4_4:-39316109 Msa0680290:CDS
AAAATCGACAATGGCTGAGG+CGG 0.566675 4_4:-39317596 Msa0680290:exon
CCAATGAAATGAACTGGGTG+AGG 0.579449 4_4:-39316017 Msa0680290:exon
CTAGCCTCCACTAACCCTGA+TGG 0.579508 4_4:-39315836 Msa0680290:three_prime_UTR
CTTTCCACTTGCTCCGACGA+CGG 0.580800 4_4:-39317529 Msa0680290:CDS
CATAACATCATTTGACTGCA+GGG 0.582332 4_4:+39315652 None:intergenic
CCGTCTGATAAAGGCGATGG+TGG 0.589063 4_4:-39316049 Msa0680290:CDS
AAAGGAAAGGGAGATGAGAA+GGG 0.589156 4_4:-39316097 Msa0680290:CDS
AAGCTAAGTGGTGATATGGC+GGG 0.590519 4_4:-39317720 Msa0680290:five_prime_UTR
GGAAAGAAAAGAAAGGCGGA+AGG 0.603937 4_4:-39316076 Msa0680290:CDS
GAAGCTAAGTGGTGATATGG+CGG 0.605561 4_4:-39317721 Msa0680290:five_prime_UTR
CCTTCCATCAGGGTTAGTGG+AGG 0.606434 4_4:+39315832 None:intergenic
GAAGGGAAAGAAAAGAAAGG+CGG 0.609576 4_4:-39316080 Msa0680290:CDS
AAGAAGAGCGTCTTTGTGAA+CGG 0.610289 4_4:+39317498 None:intergenic
CCTCCACTAACCCTGATGGA+AGG 0.617464 4_4:-39315832 Msa0680290:three_prime_UTR
CCACCATCGCCTTTATCAGA+CGG 0.623150 4_4:+39316049 None:intergenic
GAGCCGTCTGATAAAGGCGA+TGG 0.623654 4_4:-39316052 Msa0680290:CDS
TAAAACTATCGTACGCCGTG+TGG 0.624249 4_4:-39317563 Msa0680290:CDS
GAAGAAGAGAAAATCGACAA+TGG 0.639571 4_4:-39317605 Msa0680290:exon
CAATGAAATGAACTGGGTGA+GGG 0.647808 4_4:-39316016 Msa0680290:exon
AAAGAATGCTGGGAAGAAAG+CGG 0.668115 4_4:-39316128 Msa0680290:CDS
ACGCAGGCATCCAAATGACA+AGG 0.677360 4_4:+39315921 None:intergenic
ATATATGTAGGGAGTCAAAG+AGG 0.682246 4_4:-39316945 Msa0680290:CDS
AAAGCTTCTCCTTCACCACA+CGG 0.706469 4_4:+39317548 None:intergenic
GATGACCAATGAAATGAACT+GGG 0.722269 4_4:-39316022 Msa0680290:exon
TTGAGTGTATGTAGTAAACG+TGG 0.725186 4_4:-39315703 Msa0680290:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATCAAATTTATCAAATTA+GGG + chr4_4:39315940-39315959 None:intergenic 15.0%
!!! GATTTTAAAATTTGAAACTT+AGG - chr4_4:39316027-39316046 Msa0680290:exon 15.0%
!!! GAAAATTATGGTTTATATTT+TGG - chr4_4:39316066-39316085 Msa0680290:CDS 15.0%
!!! AAAATTTTACAATGGTTTTT+GGG - chr4_4:39316100-39316119 Msa0680290:CDS 15.0%
!!! ATTTTGTGAACTTTAAAATT+AGG - chr4_4:39316685-39316704 Msa0680290:intron 15.0%
!! ACATCAAATTTATCAAATTA+GGG + chr4_4:39315940-39315959 None:intergenic 15.0%
!!! GATTTTAAAATTTGAAACTT+AGG - chr4_4:39316027-39316046 Msa0680290:exon 15.0%
!!! GAAAATTATGGTTTATATTT+TGG - chr4_4:39316066-39316085 Msa0680290:CDS 15.0%
!!! AAAATTTTACAATGGTTTTT+GGG - chr4_4:39316100-39316119 Msa0680290:CDS 15.0%
!!! ATTTTGTGAACTTTAAAATT+AGG - chr4_4:39316685-39316704 Msa0680290:intron 15.0%
!! GACATCAAATTTATCAAATT+AGG + chr4_4:39315941-39315960 None:intergenic 20.0%
!!! AATTATGGTTTATATTTTGG+AGG - chr4_4:39316069-39316088 Msa0680290:CDS 20.0%
!!! GAAAATTTTACAATGGTTTT+TGG - chr4_4:39316099-39316118 Msa0680290:CDS 20.0%
!! TAAGAAAGAGGATATAAATT+AGG - chr4_4:39316159-39316178 Msa0680290:intron 20.0%
!! AAGAAAGAGGATATAAATTA+GGG - chr4_4:39316160-39316179 Msa0680290:intron 20.0%
!!! TATTTTTCTTTTCATTGCAA+TGG - chr4_4:39316641-39316660 Msa0680290:intron 20.0%
!! TTGTCTATGTATATTATGTT+TGG - chr4_4:39317715-39317734 Msa0680290:five_prime_UTR 20.0%
!! GACATCAAATTTATCAAATT+AGG + chr4_4:39315941-39315960 None:intergenic 20.0%
!!! AATTATGGTTTATATTTTGG+AGG - chr4_4:39316069-39316088 Msa0680290:CDS 20.0%
!!! GAAAATTTTACAATGGTTTT+TGG - chr4_4:39316099-39316118 Msa0680290:CDS 20.0%
!! TAAGAAAGAGGATATAAATT+AGG - chr4_4:39316159-39316178 Msa0680290:intron 20.0%
!! AAGAAAGAGGATATAAATTA+GGG - chr4_4:39316160-39316179 Msa0680290:intron 20.0%
!!! TATTTTTCTTTTCATTGCAA+TGG - chr4_4:39316641-39316660 Msa0680290:intron 20.0%
!! TTGTCTATGTATATTATGTT+TGG - chr4_4:39317715-39317734 Msa0680290:five_prime_UTR 20.0%
! AATTGGGATAATTGGAATTA+GGG + chr4_4:39315677-39315696 None:intergenic 25.0%
! TAATTGGGATAATTGGAATT+AGG + chr4_4:39315678-39315697 None:intergenic 25.0%
!!! CGATTTTTAATTGGGATAAT+TGG + chr4_4:39315685-39315704 None:intergenic 25.0%
!!! CTCTTCTTCGATTTTTAATT+GGG + chr4_4:39315693-39315712 None:intergenic 25.0%
!! TCTCTTCTTCGATTTTTAAT+TGG + chr4_4:39315694-39315713 None:intergenic 25.0%
! AATTATTTGTGCACCAATTA+GGG + chr4_4:39315909-39315928 None:intergenic 25.0%
! AAATTATTTGTGCACCAATT+AGG + chr4_4:39315910-39315929 None:intergenic 25.0%
!! TAATTGGGGAAATTTTGTAA+TGG - chr4_4:39315981-39316000 Msa0680290:three_prime_UTR 25.0%
!! AATTGGGGAAATTTTGTAAT+GGG - chr4_4:39315982-39316001 Msa0680290:three_prime_UTR 25.0%
!! AATTTGAAACTTAGGTTGTA+AGG - chr4_4:39316035-39316054 Msa0680290:CDS 25.0%
! TTCATGGGTGATTTAAAAAA+TGG - chr4_4:39316128-39316147 Msa0680290:CDS 25.0%
! TCATGGGTGATTTAAAAAAT+GGG - chr4_4:39316129-39316148 Msa0680290:CDS 25.0%
! ATAAATTAGGGTTTGTAGTT+TGG - chr4_4:39316172-39316191 Msa0680290:intron 25.0%
!! AATTGGGAAAATTTTGCATT+GGG - chr4_4:39316199-39316218 Msa0680290:intron 25.0%
!! ATAAAAATGGGAACTTTTTG+AGG - chr4_4:39316290-39316309 Msa0680290:intron 25.0%
!! TGTCATTTAAGCAATCATTA+TGG - chr4_4:39316618-39316637 Msa0680290:intron 25.0%
! AATCCCTATTTAGTTGAAAA+TGG - chr4_4:39316711-39316730 Msa0680290:intron 25.0%
! ATCCCTATTTAGTTGAAAAT+GGG - chr4_4:39316712-39316731 Msa0680290:intron 25.0%
!! AACCCATTTTCAACTAAATA+GGG + chr4_4:39316717-39316736 None:intergenic 25.0%
!!! CATTTTAGAGTTACAATTCA+TGG + chr4_4:39316780-39316799 None:intergenic 25.0%
!!! TAACCTAAAGTTTTATGTCT+CGG + chr4_4:39317348-39317367 None:intergenic 25.0%
! ATACATAATTCCTTGTCATT+TGG - chr4_4:39317378-39317397 Msa0680290:intron 25.0%
!!! CTTTTAGGAAAGAATATGAA+GGG - chr4_4:39317503-39317522 Msa0680290:CDS 25.0%
! ATACATAGACAACATGATAA+AGG + chr4_4:39317707-39317726 None:intergenic 25.0%
! ATGTATATTATGTTTGGATG+AGG - chr4_4:39317721-39317740 Msa0680290:five_prime_UTR 25.0%
! AATTGGGATAATTGGAATTA+GGG + chr4_4:39315677-39315696 None:intergenic 25.0%
! TAATTGGGATAATTGGAATT+AGG + chr4_4:39315678-39315697 None:intergenic 25.0%
!!! CGATTTTTAATTGGGATAAT+TGG + chr4_4:39315685-39315704 None:intergenic 25.0%
!!! CTCTTCTTCGATTTTTAATT+GGG + chr4_4:39315693-39315712 None:intergenic 25.0%
!! TCTCTTCTTCGATTTTTAAT+TGG + chr4_4:39315694-39315713 None:intergenic 25.0%
! AATTATTTGTGCACCAATTA+GGG + chr4_4:39315909-39315928 None:intergenic 25.0%
! AAATTATTTGTGCACCAATT+AGG + chr4_4:39315910-39315929 None:intergenic 25.0%
!! TAATTGGGGAAATTTTGTAA+TGG - chr4_4:39315981-39316000 Msa0680290:three_prime_UTR 25.0%
!! AATTGGGGAAATTTTGTAAT+GGG - chr4_4:39315982-39316001 Msa0680290:three_prime_UTR 25.0%
!! AATTTGAAACTTAGGTTGTA+AGG - chr4_4:39316035-39316054 Msa0680290:CDS 25.0%
! TTCATGGGTGATTTAAAAAA+TGG - chr4_4:39316128-39316147 Msa0680290:CDS 25.0%
! TCATGGGTGATTTAAAAAAT+GGG - chr4_4:39316129-39316148 Msa0680290:CDS 25.0%
! ATAAATTAGGGTTTGTAGTT+TGG - chr4_4:39316172-39316191 Msa0680290:intron 25.0%
!! AATTGGGAAAATTTTGCATT+GGG - chr4_4:39316199-39316218 Msa0680290:intron 25.0%
!! ATAAAAATGGGAACTTTTTG+AGG - chr4_4:39316290-39316309 Msa0680290:intron 25.0%
!! TGTCATTTAAGCAATCATTA+TGG - chr4_4:39316618-39316637 Msa0680290:intron 25.0%
! AATCCCTATTTAGTTGAAAA+TGG - chr4_4:39316711-39316730 Msa0680290:intron 25.0%
! ATCCCTATTTAGTTGAAAAT+GGG - chr4_4:39316712-39316731 Msa0680290:intron 25.0%
!! AACCCATTTTCAACTAAATA+GGG + chr4_4:39316717-39316736 None:intergenic 25.0%
!!! CATTTTAGAGTTACAATTCA+TGG + chr4_4:39316780-39316799 None:intergenic 25.0%
!!! TAACCTAAAGTTTTATGTCT+CGG + chr4_4:39317348-39317367 None:intergenic 25.0%
! ATACATAATTCCTTGTCATT+TGG - chr4_4:39317378-39317397 Msa0680290:intron 25.0%
!!! CTTTTAGGAAAGAATATGAA+GGG - chr4_4:39317503-39317522 Msa0680290:CDS 25.0%
! ATACATAGACAACATGATAA+AGG + chr4_4:39317707-39317726 None:intergenic 25.0%
! ATGTATATTATGTTTGGATG+AGG - chr4_4:39317721-39317740 Msa0680290:five_prime_UTR 25.0%
!! GAAATTTTCAAGAAGCTAAG+TGG - chr4_4:39315577-39315596 Msa0680290:three_prime_UTR 30.0%
! TGAATTGGGATTTGGAATTA+GGG + chr4_4:39315652-39315671 None:intergenic 30.0%
! TTGAATTGGGATTTGGAATT+AGG + chr4_4:39315653-39315672 None:intergenic 30.0%
TTGGAATTAGGGTTTGAATT+GGG + chr4_4:39315666-39315685 None:intergenic 30.0%
ATTGGAATTAGGGTTTGAAT+TGG + chr4_4:39315667-39315686 None:intergenic 30.0%
!!! GGAAATTTTGTAATGGGTTT+TGG - chr4_4:39315988-39316007 Msa0680290:three_prime_UTR 30.0%
AAGGAAGGAGATGAAAATTA+TGG - chr4_4:39316054-39316073 Msa0680290:CDS 30.0%
!! TTTATATTTTGGAGGCAACT+GGG - chr4_4:39316077-39316096 Msa0680290:CDS 30.0%
! CAACTGGGAAAATTTTACAA+TGG - chr4_4:39316092-39316111 Msa0680290:CDS 30.0%
! CAATTGGGAAAATTTTGCAT+TGG - chr4_4:39316198-39316217 Msa0680290:intron 30.0%
! GAAAATTTTGCATTGGGTTT+TGG - chr4_4:39316205-39316224 Msa0680290:intron 30.0%
TTCCTGGGTGATTATAAAAA+TGG - chr4_4:39316277-39316296 Msa0680290:intron 30.0%
TCCTGGGTGATTATAAAAAT+GGG - chr4_4:39316278-39316297 Msa0680290:intron 30.0%
!! TTTGTGTTGTTTGTATTTGC+AGG - chr4_4:39316334-39316353 Msa0680290:intron 30.0%
!! TTGTGTTGTTTGTATTTGCA+GGG - chr4_4:39316335-39316354 Msa0680290:intron 30.0%
!!! TGTTATGACTGCTTTGTTTT+CGG - chr4_4:39316493-39316512 Msa0680290:intron 30.0%
!!! TGTTTTTAGACTCAGTATCA+TGG - chr4_4:39316587-39316606 Msa0680290:intron 30.0%
! CAACCCATTTTCAACTAAAT+AGG + chr4_4:39316718-39316737 None:intergenic 30.0%
CTATTTAGTTGAAAATGGGT+TGG - chr4_4:39316716-39316735 Msa0680290:intron 30.0%
!!! CAGTTTTAGGCTTTTAACTA+TGG + chr4_4:39316807-39316826 None:intergenic 30.0%
! GCATAGAATAACTCAGTTTT+AGG + chr4_4:39316820-39316839 None:intergenic 30.0%
TTATGCTACATAAACAAGTG+TGG - chr4_4:39316914-39316933 Msa0680290:CDS 30.0%
AAGAGGAATGAAACTATTTG+TGG - chr4_4:39316975-39316994 Msa0680290:intron 30.0%
AGAGGAATGAAACTATTTGT+GGG - chr4_4:39316976-39316995 Msa0680290:intron 30.0%
!! GTCAAAAAGAAAAAGTGTCA+AGG + chr4_4:39317144-39317163 None:intergenic 30.0%
! TTTTTGACCTATCAGAGTTT+AGG - chr4_4:39317156-39317175 Msa0680290:intron 30.0%
! TCTTTTTCCTAAACTCTGAT+AGG + chr4_4:39317166-39317185 None:intergenic 30.0%
AGTTTAGGAAAAAGAATGCT+GGG - chr4_4:39317171-39317190 Msa0680290:intron 30.0%
! AGCGTTTTACATACAAAACT+TGG + chr4_4:39317455-39317474 None:intergenic 30.0%
!! GCTTTTAGGAAAGAATATGA+AGG - chr4_4:39317502-39317521 Msa0680290:CDS 30.0%
!! GAAATTTTCAAGAAGCTAAG+TGG - chr4_4:39315577-39315596 Msa0680290:three_prime_UTR 30.0%
! TGAATTGGGATTTGGAATTA+GGG + chr4_4:39315652-39315671 None:intergenic 30.0%
! TTGAATTGGGATTTGGAATT+AGG + chr4_4:39315653-39315672 None:intergenic 30.0%
TTGGAATTAGGGTTTGAATT+GGG + chr4_4:39315666-39315685 None:intergenic 30.0%
ATTGGAATTAGGGTTTGAAT+TGG + chr4_4:39315667-39315686 None:intergenic 30.0%
!!! GGAAATTTTGTAATGGGTTT+TGG - chr4_4:39315988-39316007 Msa0680290:three_prime_UTR 30.0%
AAGGAAGGAGATGAAAATTA+TGG - chr4_4:39316054-39316073 Msa0680290:CDS 30.0%
!! TTTATATTTTGGAGGCAACT+GGG - chr4_4:39316077-39316096 Msa0680290:CDS 30.0%
! CAACTGGGAAAATTTTACAA+TGG - chr4_4:39316092-39316111 Msa0680290:CDS 30.0%
! CAATTGGGAAAATTTTGCAT+TGG - chr4_4:39316198-39316217 Msa0680290:intron 30.0%
! GAAAATTTTGCATTGGGTTT+TGG - chr4_4:39316205-39316224 Msa0680290:intron 30.0%
TTCCTGGGTGATTATAAAAA+TGG - chr4_4:39316277-39316296 Msa0680290:intron 30.0%
TCCTGGGTGATTATAAAAAT+GGG - chr4_4:39316278-39316297 Msa0680290:intron 30.0%
!! TTTGTGTTGTTTGTATTTGC+AGG - chr4_4:39316334-39316353 Msa0680290:intron 30.0%
!! TTGTGTTGTTTGTATTTGCA+GGG - chr4_4:39316335-39316354 Msa0680290:intron 30.0%
!!! TGTTATGACTGCTTTGTTTT+CGG - chr4_4:39316493-39316512 Msa0680290:intron 30.0%
!!! TGTTTTTAGACTCAGTATCA+TGG - chr4_4:39316587-39316606 Msa0680290:intron 30.0%
! CAACCCATTTTCAACTAAAT+AGG + chr4_4:39316718-39316737 None:intergenic 30.0%
CTATTTAGTTGAAAATGGGT+TGG - chr4_4:39316716-39316735 Msa0680290:intron 30.0%
!!! CAGTTTTAGGCTTTTAACTA+TGG + chr4_4:39316807-39316826 None:intergenic 30.0%
! GCATAGAATAACTCAGTTTT+AGG + chr4_4:39316820-39316839 None:intergenic 30.0%
TTATGCTACATAAACAAGTG+TGG - chr4_4:39316914-39316933 Msa0680290:CDS 30.0%
AAGAGGAATGAAACTATTTG+TGG - chr4_4:39316975-39316994 Msa0680290:intron 30.0%
AGAGGAATGAAACTATTTGT+GGG - chr4_4:39316976-39316995 Msa0680290:intron 30.0%
!! GTCAAAAAGAAAAAGTGTCA+AGG + chr4_4:39317144-39317163 None:intergenic 30.0%
! TTTTTGACCTATCAGAGTTT+AGG - chr4_4:39317156-39317175 Msa0680290:intron 30.0%
! TCTTTTTCCTAAACTCTGAT+AGG + chr4_4:39317166-39317185 None:intergenic 30.0%
AGTTTAGGAAAAAGAATGCT+GGG - chr4_4:39317171-39317190 Msa0680290:intron 30.0%
! AGCGTTTTACATACAAAACT+TGG + chr4_4:39317455-39317474 None:intergenic 30.0%
!! GCTTTTAGGAAAGAATATGA+AGG - chr4_4:39317502-39317521 Msa0680290:CDS 30.0%
TTAGGGTTTGAATTGGGATT+TGG + chr4_4:39315660-39315679 None:intergenic 35.0%
GAAGAAGAGAAAATCGACAA+TGG - chr4_4:39315704-39315723 Msa0680290:three_prime_UTR 35.0%
AATGAAGATTCTGGCACTTT+CGG + chr4_4:39315844-39315863 None:intergenic 35.0%
AAGGTAGTGAATGAAGATTC+TGG + chr4_4:39315853-39315872 None:intergenic 35.0%
CAATTAGGGTTTCAGATAGA+AGG + chr4_4:39315895-39315914 None:intergenic 35.0%
! CTTCTATCTGAAACCCTAAT+TGG - chr4_4:39315893-39315912 Msa0680290:three_prime_UTR 35.0%
!! GATGTCTGAAATTCCCTTTT+TGG - chr4_4:39315955-39315974 Msa0680290:three_prime_UTR 35.0%
!! ATTCCCTTTTTGGAGGTAAT+TGG - chr4_4:39315965-39315984 Msa0680290:three_prime_UTR 35.0%
!! TTCCCTTTTTGGAGGTAATT+GGG - chr4_4:39315966-39315985 Msa0680290:three_prime_UTR 35.0%
! TGAAACTTAGGTTGTAAGGA+AGG - chr4_4:39316039-39316058 Msa0680290:CDS 35.0%
!! GTTTATATTTTGGAGGCAAC+TGG - chr4_4:39316076-39316095 Msa0680290:CDS 35.0%
!!! TGGTTTTTGGGATTGATTCA+TGG - chr4_4:39316112-39316131 Msa0680290:CDS 35.0%
!!! GGTTTTTGGGATTGATTCAT+GGG - chr4_4:39316113-39316132 Msa0680290:CDS 35.0%
ATGGGAACTTTGTAAGAAAG+AGG - chr4_4:39316147-39316166 Msa0680290:intron 35.0%
AATTAGGGTTTGTAGTTTGG+AGG - chr4_4:39316175-39316194 Msa0680290:intron 35.0%
TTTGTAGTTTGGAGGCAATT+GGG - chr4_4:39316183-39316202 Msa0680290:intron 35.0%
!! TTGGCTATTTTGGAGGAAAT+TGG - chr4_4:39316224-39316243 Msa0680290:intron 35.0%
!! TGGCTATTTTGGAGGAAATT+GGG - chr4_4:39316225-39316244 Msa0680290:intron 35.0%
!!! AAATTGGGGAAGTTTTGTTG+TGG - chr4_4:39316240-39316259 Msa0680290:intron 35.0%
!!! AATTGGGGAAGTTTTGTTGT+GGG - chr4_4:39316241-39316260 Msa0680290:intron 35.0%
!! TCCCATTTTTATAATCACCC+AGG + chr4_4:39316282-39316301 None:intergenic 35.0%
CAGGGCTAATGATATATGTA+GGG - chr4_4:39316353-39316372 Msa0680290:intron 35.0%
ATATATGTAGGGAGTCAAAG+AGG - chr4_4:39316364-39316383 Msa0680290:intron 35.0%
ACTGAGTTTACTGAGTTTGT+TGG - chr4_4:39316429-39316448 Msa0680290:intron 35.0%
! CTGAGTTTACTGAGTTTGTT+GGG - chr4_4:39316430-39316449 Msa0680290:intron 35.0%
AACAAAGCAGTCATAACACA+GGG + chr4_4:39316491-39316510 None:intergenic 35.0%
AAACAAAGCAGTCATAACAC+AGG + chr4_4:39316492-39316511 None:intergenic 35.0%
TGCAATGGAAGTTCAGAAAA+AGG - chr4_4:39316656-39316675 Msa0680290:intron 35.0%
AACTGAGTTATTCTATGCTC+TGG - chr4_4:39316822-39316841 Msa0680290:intron 35.0%
ATGGAAGATATGATCTTGCT+TGG - chr4_4:39316875-39316894 Msa0680290:CDS 35.0%
GTCAGCTAGTGAGTAATATT+TGG - chr4_4:39316936-39316955 Msa0680290:CDS 35.0%
GCTAGTGAGTAATATTTGGT+TGG - chr4_4:39316940-39316959 Msa0680290:CDS 35.0%
GAGTTTAGGAAAAAGAATGC+TGG - chr4_4:39317170-39317189 Msa0680290:intron 35.0%
TGAGAAGGGAAAGAAAAGAA+AGG - chr4_4:39317226-39317245 Msa0680290:intron 35.0%
TGATGACCAATGAAATGAAC+TGG - chr4_4:39317286-39317305 Msa0680290:intron 35.0%
GATGACCAATGAAATGAACT+GGG - chr4_4:39317287-39317306 Msa0680290:intron 35.0%
TACATAGTTAACTAGTACGC+AGG + chr4_4:39317407-39317426 None:intergenic 35.0%
TGAGCAGTTCTTTGTGAATT+CGG - chr4_4:39317533-39317552 Msa0680290:CDS 35.0%
TGAATTCGGTTATGAATGTC+TGG - chr4_4:39317547-39317566 Msa0680290:CDS 35.0%
!! TCAAATTTGTTGCAGCATTG+AGG + chr4_4:39317581-39317600 None:intergenic 35.0%
TTGAGTGTATGTAGTAAACG+TGG - chr4_4:39317606-39317625 Msa0680290:exon 35.0%
CATAACATCATTTGACTGCA+GGG + chr4_4:39317660-39317679 None:intergenic 35.0%
TCATAACATCATTTGACTGC+AGG + chr4_4:39317661-39317680 None:intergenic 35.0%
TTAGGGTTTGAATTGGGATT+TGG + chr4_4:39315660-39315679 None:intergenic 35.0%
GAAGAAGAGAAAATCGACAA+TGG - chr4_4:39315704-39315723 Msa0680290:three_prime_UTR 35.0%
AATGAAGATTCTGGCACTTT+CGG + chr4_4:39315844-39315863 None:intergenic 35.0%
AAGGTAGTGAATGAAGATTC+TGG + chr4_4:39315853-39315872 None:intergenic 35.0%
CAATTAGGGTTTCAGATAGA+AGG + chr4_4:39315895-39315914 None:intergenic 35.0%
! CTTCTATCTGAAACCCTAAT+TGG - chr4_4:39315893-39315912 Msa0680290:three_prime_UTR 35.0%
!! GATGTCTGAAATTCCCTTTT+TGG - chr4_4:39315955-39315974 Msa0680290:three_prime_UTR 35.0%
!! ATTCCCTTTTTGGAGGTAAT+TGG - chr4_4:39315965-39315984 Msa0680290:three_prime_UTR 35.0%
!! TTCCCTTTTTGGAGGTAATT+GGG - chr4_4:39315966-39315985 Msa0680290:three_prime_UTR 35.0%
! TGAAACTTAGGTTGTAAGGA+AGG - chr4_4:39316039-39316058 Msa0680290:CDS 35.0%
!! GTTTATATTTTGGAGGCAAC+TGG - chr4_4:39316076-39316095 Msa0680290:CDS 35.0%
!!! TGGTTTTTGGGATTGATTCA+TGG - chr4_4:39316112-39316131 Msa0680290:CDS 35.0%
!!! GGTTTTTGGGATTGATTCAT+GGG - chr4_4:39316113-39316132 Msa0680290:CDS 35.0%
ATGGGAACTTTGTAAGAAAG+AGG - chr4_4:39316147-39316166 Msa0680290:intron 35.0%
AATTAGGGTTTGTAGTTTGG+AGG - chr4_4:39316175-39316194 Msa0680290:intron 35.0%
TTTGTAGTTTGGAGGCAATT+GGG - chr4_4:39316183-39316202 Msa0680290:intron 35.0%
!! TTGGCTATTTTGGAGGAAAT+TGG - chr4_4:39316224-39316243 Msa0680290:intron 35.0%
!! TGGCTATTTTGGAGGAAATT+GGG - chr4_4:39316225-39316244 Msa0680290:intron 35.0%
!!! AAATTGGGGAAGTTTTGTTG+TGG - chr4_4:39316240-39316259 Msa0680290:intron 35.0%
!!! AATTGGGGAAGTTTTGTTGT+GGG - chr4_4:39316241-39316260 Msa0680290:intron 35.0%
!! TCCCATTTTTATAATCACCC+AGG + chr4_4:39316282-39316301 None:intergenic 35.0%
CAGGGCTAATGATATATGTA+GGG - chr4_4:39316353-39316372 Msa0680290:intron 35.0%
ATATATGTAGGGAGTCAAAG+AGG - chr4_4:39316364-39316383 Msa0680290:intron 35.0%
ACTGAGTTTACTGAGTTTGT+TGG - chr4_4:39316429-39316448 Msa0680290:intron 35.0%
! CTGAGTTTACTGAGTTTGTT+GGG - chr4_4:39316430-39316449 Msa0680290:intron 35.0%
AACAAAGCAGTCATAACACA+GGG + chr4_4:39316491-39316510 None:intergenic 35.0%
AAACAAAGCAGTCATAACAC+AGG + chr4_4:39316492-39316511 None:intergenic 35.0%
TGCAATGGAAGTTCAGAAAA+AGG - chr4_4:39316656-39316675 Msa0680290:intron 35.0%
AACTGAGTTATTCTATGCTC+TGG - chr4_4:39316822-39316841 Msa0680290:intron 35.0%
ATGGAAGATATGATCTTGCT+TGG - chr4_4:39316875-39316894 Msa0680290:CDS 35.0%
GTCAGCTAGTGAGTAATATT+TGG - chr4_4:39316936-39316955 Msa0680290:CDS 35.0%
GCTAGTGAGTAATATTTGGT+TGG - chr4_4:39316940-39316959 Msa0680290:CDS 35.0%
GAGTTTAGGAAAAAGAATGC+TGG - chr4_4:39317170-39317189 Msa0680290:intron 35.0%
TGAGAAGGGAAAGAAAAGAA+AGG - chr4_4:39317226-39317245 Msa0680290:intron 35.0%
TGATGACCAATGAAATGAAC+TGG - chr4_4:39317286-39317305 Msa0680290:intron 35.0%
GATGACCAATGAAATGAACT+GGG - chr4_4:39317287-39317306 Msa0680290:intron 35.0%
TACATAGTTAACTAGTACGC+AGG + chr4_4:39317407-39317426 None:intergenic 35.0%
TGAGCAGTTCTTTGTGAATT+CGG - chr4_4:39317533-39317552 Msa0680290:CDS 35.0%
TGAATTCGGTTATGAATGTC+TGG - chr4_4:39317547-39317566 Msa0680290:CDS 35.0%
!! TCAAATTTGTTGCAGCATTG+AGG + chr4_4:39317581-39317600 None:intergenic 35.0%
TTGAGTGTATGTAGTAAACG+TGG - chr4_4:39317606-39317625 Msa0680290:exon 35.0%
CATAACATCATTTGACTGCA+GGG + chr4_4:39317660-39317679 None:intergenic 35.0%
TCATAACATCATTTGACTGC+AGG + chr4_4:39317661-39317680 None:intergenic 35.0%
CAAGAAGCTAAGTGGTGATA+TGG - chr4_4:39315585-39315604 Msa0680290:three_prime_UTR 40.0%
!! TTGTGCTTGTTGTCGCTAAT+GGG + chr4_4:39315623-39315642 None:intergenic 40.0%
!! TTTGTGCTTGTTGTCGCTAA+TGG + chr4_4:39315624-39315643 None:intergenic 40.0%
!! AAGAAGAGCGTCTTTGTGAA+CGG + chr4_4:39315814-39315833 None:intergenic 40.0%
CAAGTACTTACGTAGCAGAA+AGG + chr4_4:39315872-39315891 None:intergenic 40.0%
!! GTCTGAAATTCCCTTTTTGG+AGG - chr4_4:39315958-39315977 Msa0680290:three_prime_UTR 40.0%
!! TCCCTTTTTGGAGGTAATTG+GGG - chr4_4:39315967-39315986 Msa0680290:three_prime_UTR 40.0%
TCCCCAATTACCTCCAAAAA+GGG + chr4_4:39315971-39315990 None:intergenic 40.0%
TTCCCCAATTACCTCCAAAA+AGG + chr4_4:39315972-39315991 None:intergenic 40.0%
GTTTGTAGTTTGGAGGCAAT+TGG - chr4_4:39316182-39316201 Msa0680290:intron 40.0%
!!! GCATTGGGTTTTGGCTATTT+TGG - chr4_4:39316214-39316233 Msa0680290:intron 40.0%
!!! TTGGGTTTTGGCTATTTTGG+AGG - chr4_4:39316217-39316236 Msa0680290:intron 40.0%
!! GGCTATTTTGGAGGAAATTG+GGG - chr4_4:39316226-39316245 Msa0680290:intron 40.0%
!!! GGAAGTTTTGTTGTGGGTTT+TGG - chr4_4:39316247-39316266 Msa0680290:intron 40.0%
!!! GGTTTTGGAGATTGATTCCT+GGG - chr4_4:39316262-39316281 Msa0680290:intron 40.0%
GCAGGGCTAATGATATATGT+AGG - chr4_4:39316352-39316371 Msa0680290:intron 40.0%
CCTTCAAGAGAATCTCTTAG+AGG + chr4_4:39316456-39316475 None:intergenic 40.0%
! CCTCTAAGAGATTCTCTTGA+AGG - chr4_4:39316453-39316472 Msa0680290:intron 40.0%
TGAACCAACTCTAAGCATGA+TGG - chr4_4:39316856-39316875 Msa0680290:intron 40.0%
TCTTCCATCATGCTTAGAGT+TGG + chr4_4:39316863-39316882 None:intergenic 40.0%
! GTTGGTTCATAGCTACAAAG+AGG - chr4_4:39316958-39316977 Msa0680290:intron 40.0%
AAAGAATGCTGGGAAGAAAG+CGG - chr4_4:39317181-39317200 Msa0680290:intron 40.0%
! TTCTCATCTCCCTTTCCTTT+TGG + chr4_4:39317212-39317231 None:intergenic 40.0%
AAAAGGAAAGGGAGATGAGA+AGG - chr4_4:39317211-39317230 Msa0680290:intron 40.0%
AAAGGAAAGGGAGATGAGAA+GGG - chr4_4:39317212-39317231 Msa0680290:intron 40.0%
GAAGGGAAAGAAAAGAAAGG+CGG - chr4_4:39317229-39317248 Msa0680290:intron 40.0%
CAATGAAATGAACTGGGTGA+GGG - chr4_4:39317293-39317312 Msa0680290:intron 40.0%
GAGCCGAGACATAAAACTTT+AGG - chr4_4:39317342-39317361 Msa0680290:intron 40.0%
CTAAAAGCTTCCTTCCATCA+GGG + chr4_4:39317490-39317509 None:intergenic 40.0%
ATCATTTGACTGCAGGGAAT+TGG + chr4_4:39317654-39317673 None:intergenic 40.0%
CAAGAAGCTAAGTGGTGATA+TGG - chr4_4:39315585-39315604 Msa0680290:three_prime_UTR 40.0%
!! TTGTGCTTGTTGTCGCTAAT+GGG + chr4_4:39315623-39315642 None:intergenic 40.0%
!! TTTGTGCTTGTTGTCGCTAA+TGG + chr4_4:39315624-39315643 None:intergenic 40.0%
!! AAGAAGAGCGTCTTTGTGAA+CGG + chr4_4:39315814-39315833 None:intergenic 40.0%
CAAGTACTTACGTAGCAGAA+AGG + chr4_4:39315872-39315891 None:intergenic 40.0%
!! GTCTGAAATTCCCTTTTTGG+AGG - chr4_4:39315958-39315977 Msa0680290:three_prime_UTR 40.0%
!! TCCCTTTTTGGAGGTAATTG+GGG - chr4_4:39315967-39315986 Msa0680290:three_prime_UTR 40.0%
TCCCCAATTACCTCCAAAAA+GGG + chr4_4:39315971-39315990 None:intergenic 40.0%
TTCCCCAATTACCTCCAAAA+AGG + chr4_4:39315972-39315991 None:intergenic 40.0%
GTTTGTAGTTTGGAGGCAAT+TGG - chr4_4:39316182-39316201 Msa0680290:intron 40.0%
!!! GCATTGGGTTTTGGCTATTT+TGG - chr4_4:39316214-39316233 Msa0680290:intron 40.0%
!!! TTGGGTTTTGGCTATTTTGG+AGG - chr4_4:39316217-39316236 Msa0680290:intron 40.0%
!! GGCTATTTTGGAGGAAATTG+GGG - chr4_4:39316226-39316245 Msa0680290:intron 40.0%
!!! GGAAGTTTTGTTGTGGGTTT+TGG - chr4_4:39316247-39316266 Msa0680290:intron 40.0%
!!! GGTTTTGGAGATTGATTCCT+GGG - chr4_4:39316262-39316281 Msa0680290:intron 40.0%
GCAGGGCTAATGATATATGT+AGG - chr4_4:39316352-39316371 Msa0680290:intron 40.0%
CCTTCAAGAGAATCTCTTAG+AGG + chr4_4:39316456-39316475 None:intergenic 40.0%
! CCTCTAAGAGATTCTCTTGA+AGG - chr4_4:39316453-39316472 Msa0680290:intron 40.0%
TGAACCAACTCTAAGCATGA+TGG - chr4_4:39316856-39316875 Msa0680290:intron 40.0%
TCTTCCATCATGCTTAGAGT+TGG + chr4_4:39316863-39316882 None:intergenic 40.0%
! GTTGGTTCATAGCTACAAAG+AGG - chr4_4:39316958-39316977 Msa0680290:intron 40.0%
AAAGAATGCTGGGAAGAAAG+CGG - chr4_4:39317181-39317200 Msa0680290:intron 40.0%
! TTCTCATCTCCCTTTCCTTT+TGG + chr4_4:39317212-39317231 None:intergenic 40.0%
AAAAGGAAAGGGAGATGAGA+AGG - chr4_4:39317211-39317230 Msa0680290:intron 40.0%
AAAGGAAAGGGAGATGAGAA+GGG - chr4_4:39317212-39317231 Msa0680290:intron 40.0%
GAAGGGAAAGAAAAGAAAGG+CGG - chr4_4:39317229-39317248 Msa0680290:intron 40.0%
CAATGAAATGAACTGGGTGA+GGG - chr4_4:39317293-39317312 Msa0680290:intron 40.0%
GAGCCGAGACATAAAACTTT+AGG - chr4_4:39317342-39317361 Msa0680290:intron 40.0%
CTAAAAGCTTCCTTCCATCA+GGG + chr4_4:39317490-39317509 None:intergenic 40.0%
ATCATTTGACTGCAGGGAAT+TGG + chr4_4:39317654-39317673 None:intergenic 40.0%
GAAGCTAAGTGGTGATATGG+CGG - chr4_4:39315588-39315607 Msa0680290:three_prime_UTR 45.0%
AAGCTAAGTGGTGATATGGC+GGG - chr4_4:39315589-39315608 Msa0680290:three_prime_UTR 45.0%
GAGAAAATCGACAATGGCTG+AGG - chr4_4:39315710-39315729 Msa0680290:three_prime_UTR 45.0%
AAAATCGACAATGGCTGAGG+CGG - chr4_4:39315713-39315732 Msa0680290:three_prime_UTR 45.0%
! ACACGGCGTACGATAGTTTT+AGG + chr4_4:39315747-39315766 None:intergenic 45.0%
TAAAACTATCGTACGCCGTG+TGG - chr4_4:39315746-39315765 Msa0680290:three_prime_UTR 45.0%
AAAGCTTCTCCTTCACCACA+CGG + chr4_4:39315764-39315783 None:intergenic 45.0%
!!! GGGTTTTGGAGATTGATTCC+TGG - chr4_4:39316261-39316280 Msa0680290:intron 45.0%
GACCAATATCTGCCCTAACT+TGG - chr4_4:39317114-39317133 Msa0680290:intron 45.0%
TGCCAAGTTAGGGCAGATAT+TGG + chr4_4:39317119-39317138 None:intergenic 45.0%
TGTCAAGGTCTGCCAAGTTA+GGG + chr4_4:39317129-39317148 None:intergenic 45.0%
GGAAAGAAAAGAAAGGCGGA+AGG - chr4_4:39317233-39317252 Msa0680290:intron 45.0%
CCTCACCCAGTTCATTTCAT+TGG + chr4_4:39317295-39317314 None:intergenic 45.0%
CCAATGAAATGAACTGGGTG+AGG - chr4_4:39317292-39317311 Msa0680290:intron 45.0%
! GTTTTATGTCTCGGCTCAGT+TGG + chr4_4:39317339-39317358 None:intergenic 45.0%
CCTAAAAGCTTCCTTCCATC+AGG + chr4_4:39317491-39317510 None:intergenic 45.0%
! CCTGATGGAAGGAAGCTTTT+AGG - chr4_4:39317488-39317507 Msa0680290:CDS 45.0%
GAAGCTAAGTGGTGATATGG+CGG - chr4_4:39315588-39315607 Msa0680290:three_prime_UTR 45.0%
AAGCTAAGTGGTGATATGGC+GGG - chr4_4:39315589-39315608 Msa0680290:three_prime_UTR 45.0%
GAGAAAATCGACAATGGCTG+AGG - chr4_4:39315710-39315729 Msa0680290:three_prime_UTR 45.0%
AAAATCGACAATGGCTGAGG+CGG - chr4_4:39315713-39315732 Msa0680290:three_prime_UTR 45.0%
! ACACGGCGTACGATAGTTTT+AGG + chr4_4:39315747-39315766 None:intergenic 45.0%
TAAAACTATCGTACGCCGTG+TGG - chr4_4:39315746-39315765 Msa0680290:three_prime_UTR 45.0%
AAAGCTTCTCCTTCACCACA+CGG + chr4_4:39315764-39315783 None:intergenic 45.0%
!!! GGGTTTTGGAGATTGATTCC+TGG - chr4_4:39316261-39316280 Msa0680290:intron 45.0%
GACCAATATCTGCCCTAACT+TGG - chr4_4:39317114-39317133 Msa0680290:intron 45.0%
TGCCAAGTTAGGGCAGATAT+TGG + chr4_4:39317119-39317138 None:intergenic 45.0%
TGTCAAGGTCTGCCAAGTTA+GGG + chr4_4:39317129-39317148 None:intergenic 45.0%
GGAAAGAAAAGAAAGGCGGA+AGG - chr4_4:39317233-39317252 Msa0680290:intron 45.0%
CCTCACCCAGTTCATTTCAT+TGG + chr4_4:39317295-39317314 None:intergenic 45.0%
CCAATGAAATGAACTGGGTG+AGG - chr4_4:39317292-39317311 Msa0680290:intron 45.0%
! GTTTTATGTCTCGGCTCAGT+TGG + chr4_4:39317339-39317358 None:intergenic 45.0%
CCTAAAAGCTTCCTTCCATC+AGG + chr4_4:39317491-39317510 None:intergenic 45.0%
! CCTGATGGAAGGAAGCTTTT+AGG - chr4_4:39317488-39317507 Msa0680290:CDS 45.0%
GTGTCAAGGTCTGCCAAGTT+AGG + chr4_4:39317130-39317149 None:intergenic 50.0%
AAGAAAGCGGCAGTGCCAAA+AGG - chr4_4:39317194-39317213 Msa0680290:intron 50.0%
CCACCATCGCCTTTATCAGA+CGG + chr4_4:39317263-39317282 None:intergenic 50.0%
ACGCAGGCATCCAAATGACA+AGG + chr4_4:39317391-39317410 None:intergenic 50.0%
CTTCCTTCCATCAGGGTTAG+TGG + chr4_4:39317483-39317502 None:intergenic 50.0%
GTGTCAAGGTCTGCCAAGTT+AGG + chr4_4:39317130-39317149 None:intergenic 50.0%
AAGAAAGCGGCAGTGCCAAA+AGG - chr4_4:39317194-39317213 Msa0680290:intron 50.0%
CCACCATCGCCTTTATCAGA+CGG + chr4_4:39317263-39317282 None:intergenic 50.0%
ACGCAGGCATCCAAATGACA+AGG + chr4_4:39317391-39317410 None:intergenic 50.0%
CTTCCTTCCATCAGGGTTAG+TGG + chr4_4:39317483-39317502 None:intergenic 50.0%
TATCGTACGCCGTGTGGTGA+AGG - chr4_4:39315752-39315771 Msa0680290:three_prime_UTR 55.0%
CTTTCCACTTGCTCCGACGA+CGG - chr4_4:39315780-39315799 Msa0680290:three_prime_UTR 55.0%
AGCGGCAGTGCCAAAAGGAA+AGG - chr4_4:39317199-39317218 Msa0680290:intron 55.0%
GCGGCAGTGCCAAAAGGAAA+GGG - chr4_4:39317200-39317219 Msa0680290:intron 55.0%
GAAGGCGAGCCGTCTGATAA+AGG - chr4_4:39317251-39317270 Msa0680290:intron 55.0%
GAGCCGTCTGATAAAGGCGA+TGG - chr4_4:39317257-39317276 Msa0680290:intron 55.0%
CCGTCTGATAAAGGCGATGG+TGG - chr4_4:39317260-39317279 Msa0680290:intron 55.0%
CTAGCCTCCACTAACCCTGA+TGG - chr4_4:39317473-39317492 Msa0680290:CDS 55.0%
! CCTTCCATCAGGGTTAGTGG+AGG + chr4_4:39317480-39317499 None:intergenic 55.0%
CCTCCACTAACCCTGATGGA+AGG - chr4_4:39317477-39317496 Msa0680290:CDS 55.0%
TATCGTACGCCGTGTGGTGA+AGG - chr4_4:39315752-39315771 Msa0680290:three_prime_UTR 55.0%
CTTTCCACTTGCTCCGACGA+CGG - chr4_4:39315780-39315799 Msa0680290:three_prime_UTR 55.0%
AGCGGCAGTGCCAAAAGGAA+AGG - chr4_4:39317199-39317218 Msa0680290:intron 55.0%
GCGGCAGTGCCAAAAGGAAA+GGG - chr4_4:39317200-39317219 Msa0680290:intron 55.0%
GAAGGCGAGCCGTCTGATAA+AGG - chr4_4:39317251-39317270 Msa0680290:intron 55.0%
GAGCCGTCTGATAAAGGCGA+TGG - chr4_4:39317257-39317276 Msa0680290:intron 55.0%
CCGTCTGATAAAGGCGATGG+TGG - chr4_4:39317260-39317279 Msa0680290:intron 55.0%
CTAGCCTCCACTAACCCTGA+TGG - chr4_4:39317473-39317492 Msa0680290:CDS 55.0%
! CCTTCCATCAGGGTTAGTGG+AGG + chr4_4:39317480-39317499 None:intergenic 55.0%
CCTCCACTAACCCTGATGGA+AGG - chr4_4:39317477-39317496 Msa0680290:CDS 55.0%
ATCGACAATGGCTGAGGCGG+AGG - chr4_4:39315716-39315735 Msa0680290:three_prime_UTR 60.0%
AACGGCAATGTCGCCGTCGT+CGG + chr4_4:39315796-39315815 None:intergenic 60.0%
ATCGACAATGGCTGAGGCGG+AGG - chr4_4:39315716-39315735 Msa0680290:three_prime_UTR 60.0%
AACGGCAATGTCGCCGTCGT+CGG + chr4_4:39315796-39315815 None:intergenic 60.0%
GTCGCCGTCGTCGGAGCAAG+TGG + chr4_4:39315787-39315806 None:intergenic 70.0%
GTCGCCGTCGTCGGAGCAAG+TGG + chr4_4:39315787-39315806 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 39315559 39317772 39315559 ID=Msa0680290;Name=Msa0680290
chr4_4 mRNA 39315559 39317772 39315559 ID=Msa0680290-mRNA-1;Parent=Msa0680290;Name=Msa0680290-mRNA-1;_AED=0.03;_eAED=0.03;_QI=164|1|1|1|1|1|3|474|134
chr4_4 exon 39315559 39316160 39315559 ID=Msa0680290-mRNA-1:exon:9265;Parent=Msa0680290-mRNA-1
chr4_4 exon 39316857 39316975 39316857 ID=Msa0680290-mRNA-1:exon:9264;Parent=Msa0680290-mRNA-1
chr4_4 exon 39317451 39317772 39317451 ID=Msa0680290-mRNA-1:exon:9263;Parent=Msa0680290-mRNA-1
chr4_4 five_prime_UTR 39317609 39317772 39317609 ID=Msa0680290-mRNA-1:five_prime_utr;Parent=Msa0680290-mRNA-1
chr4_4 CDS 39317451 39317608 39317451 ID=Msa0680290-mRNA-1:cds;Parent=Msa0680290-mRNA-1
chr4_4 CDS 39316857 39316975 39316857 ID=Msa0680290-mRNA-1:cds;Parent=Msa0680290-mRNA-1
chr4_4 CDS 39316033 39316160 39316033 ID=Msa0680290-mRNA-1:cds;Parent=Msa0680290-mRNA-1
chr4_4 three_prime_UTR 39315559 39316032 39315559 ID=Msa0680290-mRNA-1:three_prime_utr;Parent=Msa0680290-mRNA-1
Gene Sequence

>Msa0680290

ATGGCTGAGGCGGAGGAGCTTCCTAAAACTATCGTACGCCGTGTGGTGAAGGAGAAGCTTTCCACTTGCTCCGACGACGGCGACATTGCCGTTCACAAAGACGCTCTTCTTGCATTCTCCGAAAGTGCCAGAATCTTCATTCACTACCTTTCTGCTACGGCTAATGATATATGTAGGGAGTCAAAGAGGCAAATCATCAATGCTGAAGATGTGTTCAAAGCTCTTGAAGAAACTGAGTTTACTGAGTTTGTTGGGCCTCTAAGAGATTCTCTTGAAGAGTTTAGGAAAAAGAATGCTGGGAAGAAAGCGGCAGTGCCAAAAGGAAAGGGAGATGAGAAGGGAAAGAAAAGAAAGGCGGAAGGCGAGCCGTCTGATAAAGGCGATGGTGGTGATGATGACCAATGA
Protein sequence

>Msa0680290

MAEAEELPKTIVRRVVKEKLSTCSDDGDIAVHKDALLAFSESARIFIHYLSATANDICRESKRQIINAEDVFKALEETEFTEFVGPLRDSLEEFRKKNAGKKAAVPKGKGDEKGKKRKAEGEPSDKGDGGDDDQ*