Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0681400 | KAH1104382.1 | 44.560 | 193 | 50 | 7 | 78 | 217 | 6 | 194 | 3.16e-34 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0681400 | sp|Q8LJS2|HDT1_SOYBN | 55.294 | 85 | 36 | 1 | 79 | 163 | 7 | 89 | 2.73e-20 | 90.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0681400 | A0A072VB01 | 72.727 | 88 | 22 | 1 | 78 | 165 | 6 | 91 | 6.07e-30 | 122 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0681400 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0681400 | MtrunA17_Chr2g0320884 | 67.021 | 94 | 29 | 1 | 78 | 171 | 40 | 131 | 4.56e-31 | 117 |
| Msa0681400 | MtrunA17_Chr2g0320884 | 61.017 | 59 | 19 | 2 | 163 | 217 | 271 | 329 | 6.03e-14 | 70.1 |
| Msa0681400 | MtrunA17_Chr4g0010251 | 74.242 | 66 | 15 | 2 | 1 | 66 | 691 | 754 | 2.65e-22 | 95.5 |
| Msa0681400 | MtrunA17_Chr4g0009781 | 74.242 | 66 | 15 | 2 | 1 | 66 | 696 | 759 | 5.31e-22 | 94.7 |
| Msa0681400 | MtrunA17_Chr4g0010221 | 74.242 | 66 | 15 | 2 | 1 | 66 | 694 | 757 | 5.89e-22 | 94.7 |
| Msa0681400 | MtrunA17_Chr4g0010201 | 72.727 | 66 | 16 | 2 | 1 | 66 | 695 | 758 | 4.74e-20 | 89.0 |
| Msa0681400 | MtrunA17_Chr4g0010261 | 71.212 | 66 | 18 | 1 | 1 | 66 | 696 | 760 | 7.51e-20 | 88.6 |
| Msa0681400 | MtrunA17_Chr4g0027191 | 51.064 | 94 | 44 | 1 | 79 | 172 | 11 | 102 | 2.58e-19 | 85.9 |
| Msa0681400 | MtrunA17_Chr4g0027181 | 46.809 | 94 | 48 | 1 | 79 | 172 | 11 | 102 | 1.00e-17 | 80.1 |
| Msa0681400 | MtrunA17_Chr7g0265761 | 43.902 | 82 | 42 | 2 | 79 | 160 | 7 | 84 | 5.11e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 51 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAAGCATATGAATTTAAT+TGG | 0.130627 | 4_4:+41731264 | Msa0681400:CDS |
| GTGGTTATTTACCTCGTATT+TGG | 0.275316 | 4_4:+41733593 | Msa0681400:CDS |
| GAAATAAACACTCGCAGTTT+TGG | 0.276973 | 4_4:-41733714 | None:intergenic |
| AGGACATTCACCTCTGAAAA+TGG | 0.285743 | 4_4:+41734468 | Msa0681400:intron |
| GACATTCCAAACCATTTATC+AGG | 0.285786 | 4_4:-41731221 | None:intergenic |
| AGGAGACAACTCCTGATAAA+TGG | 0.290359 | 4_4:+41731210 | Msa0681400:CDS |
| AGAAAATGTCATATTGATAT+TGG | 0.320848 | 4_4:-41731397 | None:intergenic |
| TAAATAACCACAGGCTCTTC+TGG | 0.321440 | 4_4:-41733581 | None:intergenic |
| TTCATTGGTTGATATTGAAT+TGG | 0.324308 | 4_4:+41731298 | Msa0681400:CDS |
| GAAGTTTCAGCATCATTGTT+AGG | 0.324985 | 4_4:-41734321 | None:intergenic |
| GATATAATTCTACATGAAAT+AGG | 0.329747 | 4_4:+41731366 | Msa0681400:CDS |
| TGGTGGCCAGAAGATTGTTT+TGG | 0.336064 | 4_4:+41733613 | Msa0681400:CDS |
| CTATTCACATTTCTCAGGTT+AGG | 0.336647 | 4_4:+41733419 | Msa0681400:CDS |
| TTCATATGCTTAGCTTCTGT+TGG | 0.369235 | 4_4:-41731255 | None:intergenic |
| TGAATTAGCTGCCGAGGTTA+AGG | 0.369389 | 4_4:+41733351 | Msa0681400:intron |
| AAGCATACCTGCTGCAATTA+CGG | 0.369962 | 4_4:-41734365 | None:intergenic |
| TGGATTGCAAGAACATATAA+AGG | 0.382037 | 4_4:+41734488 | Msa0681400:CDS |
| AGGTTCCCAAAACAATCTTC+TGG | 0.382371 | 4_4:-41733619 | None:intergenic |
| GCACTTGGCGCAGCAAATAA+AGG | 0.387444 | 4_4:+41733554 | Msa0681400:CDS |
| ATCTTTCTCCAACTCATCAT+TGG | 0.390890 | 4_4:-41731343 | None:intergenic |
| TATTCACATTTCTCAGGTTA+GGG | 0.399636 | 4_4:+41733420 | Msa0681400:CDS |
| TTAGGACCTTTCTTAGAGTC+AGG | 0.425080 | 4_4:-41734303 | None:intergenic |
| ACAACTCCTGATAAATGGTT+TGG | 0.425960 | 4_4:+41731215 | Msa0681400:CDS |
| GATGCTGAAACTTCCAAGTC+TGG | 0.441612 | 4_4:+41734330 | Msa0681400:CDS |
| CTAAGCATATGAATTTAATT+GGG | 0.447691 | 4_4:+41731265 | Msa0681400:CDS |
| AGCAGCTATTCACATTTCTC+AGG | 0.458967 | 4_4:+41733414 | Msa0681400:CDS |
| TTGTTAGATTCTGAGAAAGC+TGG | 0.482257 | 4_4:+41734267 | Msa0681400:intron |
| GCAAGAGAGTCCTCCAGACT+TGG | 0.490554 | 4_4:-41734343 | None:intergenic |
| GTTATTTACCTCGTATTTGG+TGG | 0.494314 | 4_4:+41733596 | Msa0681400:CDS |
| GAGTCCTCTAGCAGCATGCT+TGG | 0.518176 | 4_4:-41734511 | None:intergenic |
| GCTGCTGCATCATGGGCATA+CGG | 0.519271 | 4_4:-41733397 | None:intergenic |
| GCAATTCCTGACTCTAAGAA+AGG | 0.524303 | 4_4:+41734297 | Msa0681400:CDS |
| CTGCTGCATCATGGGCATAC+GGG | 0.528977 | 4_4:-41733396 | None:intergenic |
| ACTTCACTTAGTAGCATGCT+TGG | 0.535966 | 4_4:-41734684 | None:intergenic |
| TCTCTTGCCGTAATTGCAGC+AGG | 0.544962 | 4_4:+41734358 | Msa0681400:CDS |
| GTGAATAGCTGCTGCATCAT+GGG | 0.548035 | 4_4:-41733404 | None:intergenic |
| TTAGCTGCCGAGGTTAAGGT+TGG | 0.554128 | 4_4:+41733355 | Msa0681400:intron |
| TGTGAATAGCTGCTGCATCA+TGG | 0.561080 | 4_4:-41733405 | None:intergenic |
| AAGGCCAAGCATGCTGCTAG+AGG | 0.601545 | 4_4:+41734507 | Msa0681400:CDS |
| AGTTTCTCCAACCTTAACCT+CGG | 0.624909 | 4_4:-41733362 | None:intergenic |
| AATTGGAACGAACACACTGT+TGG | 0.632075 | 4_4:+41731315 | Msa0681400:CDS |
| GATCTTTGAATTAGCTGCCG+AGG | 0.634911 | 4_4:+41733345 | Msa0681400:intron |
| TGGTGATGCCAATGATGAGT+TGG | 0.635777 | 4_4:+41731335 | Msa0681400:CDS |
| TGCATTGCAAGAACATAACA+AGG | 0.638959 | 4_4:+41734661 | Msa0681400:CDS |
| AATACGAGGTAAATAACCAC+AGG | 0.651072 | 4_4:-41733590 | None:intergenic |
| ATATTATTAAAAGTTATCTG+AGG | 0.654039 | 4_4:-41733659 | None:intergenic |
| GCTGAAACTTCCAAGTCTGG+AGG | 0.660898 | 4_4:+41734333 | Msa0681400:CDS |
| TCTGTTGCAGAAGTTGCAAG+AGG | 0.682206 | 4_4:+41734532 | Msa0681400:CDS |
| TCTTCTGGCCACCAAATACG+AGG | 0.688955 | 4_4:-41733604 | None:intergenic |
| AGGCATACCAGAAGAGCCTG+TGG | 0.689406 | 4_4:+41733574 | Msa0681400:CDS |
| TAAATGGTTTGGAATGTCTG+AGG | 0.723773 | 4_4:+41731226 | Msa0681400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAATATAAATAGAAATAT+AGG | - | chr4_4:41732228-41732247 | None:intergenic | 10.0% |
| !!! | TTTTAATAATATTCTTGAAA+AGG | + | chr4_4:41733670-41733689 | Msa0681400:CDS | 10.0% |
| !!! | ATATATTTATTACTTTTAGA+TGG | + | chr4_4:41734405-41734424 | Msa0681400:intron | 10.0% |
| !!! | TATATTTATTACTTTTAGAT+GGG | + | chr4_4:41734406-41734425 | Msa0681400:intron | 10.0% |
| !!! | ATATATTTATTAGTTTTAGA+TGG | + | chr4_4:41734579-41734598 | Msa0681400:intron | 10.0% |
| !!! | TATATTTATTAGTTTTAGAT+GGG | + | chr4_4:41734580-41734599 | Msa0681400:intron | 10.0% |
| !! | AAAAAAATAATCAAATGCAA+TGG | - | chr4_4:41732515-41732534 | None:intergenic | 15.0% |
| !! | AAAAGAATAAAAATATAACC+AGG | - | chr4_4:41732614-41732633 | None:intergenic | 15.0% |
| !! | ATATTATTAAAAGTTATCTG+AGG | - | chr4_4:41733662-41733681 | None:intergenic | 15.0% |
| !! | ATAATAATAAATAAGTCTCA+AGG | - | chr4_4:41733767-41733786 | None:intergenic | 15.0% |
| !! | AAAAATTTAAGCACAAATTA+CGG | - | chr4_4:41734249-41734268 | None:intergenic | 15.0% |
| !! | AAAGTAATAAATATATGCTT+CGG | - | chr4_4:41734401-41734420 | None:intergenic | 15.0% |
| !! | AAACTAATAAATATATGCTT+CGG | - | chr4_4:41734575-41734594 | None:intergenic | 15.0% |
| !! | CTAAGCATATGAATTTAATT+GGG | + | chr4_4:41731265-41731284 | Msa0681400:CDS | 20.0% |
| !! | GATATAATTCTACATGAAAT+AGG | + | chr4_4:41731366-41731385 | Msa0681400:CDS | 20.0% |
| !! | AGAAAATGTCATATTGATAT+TGG | - | chr4_4:41731400-41731419 | None:intergenic | 20.0% |
| !! | ACAAATGGAATTATTAAAGA+AGG | - | chr4_4:41731756-41731775 | None:intergenic | 20.0% |
| !! | CATATCATTATGATAACAAA+TGG | - | chr4_4:41731771-41731790 | None:intergenic | 20.0% |
| !! | CAATAAAAGTAAAAAATGAC+TGG | - | chr4_4:41732347-41732366 | None:intergenic | 20.0% |
| !!! | TAAATACTTTTTTATTCGAG+AGG | + | chr4_4:41732707-41732726 | Msa0681400:intron | 20.0% |
| !! | ATACTTGAATTATATGAATG+TGG | + | chr4_4:41732742-41732761 | Msa0681400:intron | 20.0% |
| !!! | TTGATCTAGTAATTTTTCTT+AGG | - | chr4_4:41732805-41732824 | None:intergenic | 20.0% |
| !!! | AAAAAAATCACCTAAGTTTT+CGG | + | chr4_4:41732954-41732973 | Msa0681400:intron | 20.0% |
| !! | AATATAAAATCCGAAAACTT+AGG | - | chr4_4:41732967-41732986 | None:intergenic | 20.0% |
| !!! | TTGTCATACAATTGTTTTTA+AGG | + | chr4_4:41733927-41733946 | Msa0681400:intron | 20.0% |
| !!! | TTGTTTTTAAGGTTAGATTA+AGG | + | chr4_4:41733938-41733957 | Msa0681400:intron | 20.0% |
| !! | AAGTAATAAATATATGCTTC+GGG | - | chr4_4:41734400-41734419 | None:intergenic | 20.0% |
| !! | AAAGACAACAAAAAAAAGAA+AGG | - | chr4_4:41734442-41734461 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTCTTTATTACT+AGG | + | chr4_4:41734448-41734467 | Msa0681400:intron | 20.0% |
| !! | AACTAATAAATATATGCTTC+GGG | - | chr4_4:41734574-41734593 | None:intergenic | 20.0% |
| ! | GCTAAGCATATGAATTTAAT+TGG | + | chr4_4:41731264-41731283 | Msa0681400:CDS | 25.0% |
| !! | TTCATTGGTTGATATTGAAT+TGG | + | chr4_4:41731298-41731317 | Msa0681400:CDS | 25.0% |
| ! | TTAATAGAAATGGATAACTG+TGG | - | chr4_4:41731714-41731733 | None:intergenic | 25.0% |
| !!! | TTTAATGCTGGTCTTTAATT+TGG | + | chr4_4:41732402-41732421 | Msa0681400:intron | 25.0% |
| !! | AGTTTTCGGATTTTATATTC+CGG | + | chr4_4:41732968-41732987 | Msa0681400:intron | 25.0% |
| !!! | TTTTTGTGTTTTTGTGTCTA+GGG | + | chr4_4:41733496-41733515 | Msa0681400:intron | 25.0% |
| !! | TCTTAACTATTGATGTGTTT+TGG | + | chr4_4:41733859-41733878 | Msa0681400:intron | 25.0% |
| ! | TATCTAACACAATTTAAGCA+AGG | - | chr4_4:41733996-41734015 | None:intergenic | 25.0% |
| !!! | AATTTAGCTTGTTTGCATTA+TGG | + | chr4_4:41734055-41734074 | Msa0681400:intron | 25.0% |
| ! | TCAAACAACGTTTCAATTTA+CGG | - | chr4_4:41734169-41734188 | None:intergenic | 25.0% |
| !!! | TTATTACTTTTAGATGGGTT+TGG | + | chr4_4:41734411-41734430 | Msa0681400:intron | 25.0% |
| ! | TAAAGACATGCAAAAAAGAA+AGG | - | chr4_4:41734616-41734635 | None:intergenic | 25.0% |
| ! | TTGGGAAGTTACATTTTCAT+TGG | + | chr4_4:41731283-41731302 | Msa0681400:CDS | 30.0% |
| CTAAAGCACAAAATGTTGAT+GGG | - | chr4_4:41731504-41731523 | None:intergenic | 30.0% | |
| ACTAAAGCACAAAATGTTGA+TGG | - | chr4_4:41731505-41731524 | None:intergenic | 30.0% | |
| TGACAGATATAGATCTTGAT+AGG | + | chr4_4:41731524-41731543 | Msa0681400:intron | 30.0% | |
| GATAGGTTAACAAATCTCAA+AGG | + | chr4_4:41731541-41731560 | Msa0681400:intron | 30.0% | |
| GAATTTATCATGTTCTCTTC+AGG | + | chr4_4:41731688-41731707 | Msa0681400:intron | 30.0% | |
| TGACGAAATATGATTGTTGT+AGG | + | chr4_4:41731797-41731816 | Msa0681400:intron | 30.0% | |
| AGGAAATATGTATCAGCAAT+TGG | + | chr4_4:41731830-41731849 | Msa0681400:intron | 30.0% | |
| AAGTTCATAAGAACCTCTTT+GGG | - | chr4_4:41732044-41732063 | None:intergenic | 30.0% | |
| !! | ATATTGTTATTTGTACACCC+TGG | + | chr4_4:41732240-41732259 | Msa0681400:intron | 30.0% |
| AGTACACCAATATATCTCAT+AGG | - | chr4_4:41732311-41732330 | None:intergenic | 30.0% | |
| AGCATTAAAAGTCCACTTAT+GGG | - | chr4_4:41732391-41732410 | None:intergenic | 30.0% | |
| TCTTTAAACTCTGTAATTCC+TGG | + | chr4_4:41732593-41732612 | Msa0681400:intron | 30.0% | |
| TACAATTAGTCGTAATCATG+TGG | - | chr4_4:41732651-41732670 | None:intergenic | 30.0% | |
| TAGATTATATAATCCGAACC+AGG | - | chr4_4:41733007-41733026 | None:intergenic | 30.0% | |
| ATGATGAAAGGAGAAATATG+AGG | - | chr4_4:41733139-41733158 | None:intergenic | 30.0% | |
| GAAGAAAAGTAGATGATGAA+AGG | - | chr4_4:41733151-41733170 | None:intergenic | 30.0% | |
| TATTCACATTTCTCAGGTTA+GGG | + | chr4_4:41733420-41733439 | Msa0681400:CDS | 30.0% | |
| !! | GTTTTTGTGTTTTTGTGTCT+AGG | + | chr4_4:41733495-41733514 | Msa0681400:intron | 30.0% |
| !!! | TGCTGCTTTGGTTATTTTAT+AGG | + | chr4_4:41733529-41733548 | Msa0681400:intron | 30.0% |
| !! | GTTATTTTATAGGTAGCACT+TGG | + | chr4_4:41733539-41733558 | Msa0681400:intron | 30.0% |
| CAAACAACGTTTCAATTTAC+GGG | - | chr4_4:41734168-41734187 | None:intergenic | 30.0% | |
| TGGATTGCAAGAACATATAA+AGG | + | chr4_4:41734488-41734507 | Msa0681400:CDS | 30.0% | |
| ! | TTTTGCATGTCTTTATTACC+AGG | + | chr4_4:41734621-41734640 | Msa0681400:intron | 30.0% |
| ACAACTCCTGATAAATGGTT+TGG | + | chr4_4:41731215-41731234 | Msa0681400:CDS | 35.0% | |
| GACATTCCAAACCATTTATC+AGG | - | chr4_4:41731224-41731243 | None:intergenic | 35.0% | |
| ! | TAAATGGTTTGGAATGTCTG+AGG | + | chr4_4:41731226-41731245 | Msa0681400:CDS | 35.0% |
| TTCATATGCTTAGCTTCTGT+TGG | - | chr4_4:41731258-41731277 | None:intergenic | 35.0% | |
| ATCTTTCTCCAACTCATCAT+TGG | - | chr4_4:41731346-41731365 | None:intergenic | 35.0% | |
| GGTTAACAAATCTCAAAGGA+TGG | + | chr4_4:41731545-41731564 | Msa0681400:intron | 35.0% | |
| GAAGATCAATAGGTTTGATG+TGG | + | chr4_4:41731666-41731685 | Msa0681400:intron | 35.0% | |
| CGAAATATGATTGTTGTAGG+AGG | + | chr4_4:41731800-41731819 | Msa0681400:intron | 35.0% | |
| TATGATTGTTGTAGGAGGAA+TGG | + | chr4_4:41731805-41731824 | Msa0681400:intron | 35.0% | |
| GCAGTGCAAACAATACTATT+TGG | - | chr4_4:41731861-41731880 | None:intergenic | 35.0% | |
| CAAGTTCATAAGAACCTCTT+TGG | - | chr4_4:41732045-41732064 | None:intergenic | 35.0% | |
| AGAGGTTCTTATGAACTTGA+TGG | + | chr4_4:41732046-41732065 | Msa0681400:intron | 35.0% | |
| TCTTATGAACTTGATGGAGT+TGG | + | chr4_4:41732052-41732071 | Msa0681400:intron | 35.0% | |
| GCTGATCGAAATATGTTAGT+TGG | + | chr4_4:41732078-41732097 | Msa0681400:intron | 35.0% | |
| ATCGAAATATGTTAGTTGGC+AGG | + | chr4_4:41732082-41732101 | Msa0681400:intron | 35.0% | |
| GAACGTTGTATAATCGCTAA+GGG | - | chr4_4:41732134-41732153 | None:intergenic | 35.0% | |
| TGAACGTTGTATAATCGCTA+AGG | - | chr4_4:41732135-41732154 | None:intergenic | 35.0% | |
| GTGCAAATAGCAAAATTCCA+GGG | - | chr4_4:41732206-41732225 | None:intergenic | 35.0% | |
| GTTGTTAACTATCCCATAAG+TGG | + | chr4_4:41732376-41732395 | Msa0681400:intron | 35.0% | |
| CAGCATTAAAAGTCCACTTA+TGG | - | chr4_4:41732392-41732411 | None:intergenic | 35.0% | |
| !! | CATAAGTGGACTTTTAATGC+TGG | + | chr4_4:41732390-41732409 | Msa0681400:intron | 35.0% |
| GGGTATAGAACTAATCTCTA+AGG | + | chr4_4:41732466-41732485 | Msa0681400:intron | 35.0% | |
| TTTCTTTGATGTCAATGCAG+TGG | - | chr4_4:41732930-41732949 | None:intergenic | 35.0% | |
| ! | ACTGCATTGACATCAAAGAA+AGG | + | chr4_4:41732929-41732948 | Msa0681400:intron | 35.0% |
| AAAAAGCTAACAACCTGGTT+CGG | + | chr4_4:41732991-41733010 | Msa0681400:intron | 35.0% | |
| CTATTCACATTTCTCAGGTT+AGG | + | chr4_4:41733419-41733438 | Msa0681400:CDS | 35.0% | |
| ! | GGTTTACTAAATTGCTGCTT+TGG | + | chr4_4:41733517-41733536 | Msa0681400:intron | 35.0% |
| AATACGAGGTAAATAACCAC+AGG | - | chr4_4:41733593-41733612 | None:intergenic | 35.0% | |
| GTGGTTATTTACCTCGTATT+TGG | + | chr4_4:41733593-41733612 | Msa0681400:CDS | 35.0% | |
| GTTATTTACCTCGTATTTGG+TGG | + | chr4_4:41733596-41733615 | Msa0681400:CDS | 35.0% | |
| !!! | TTGTTTTGGGAACCTTAATC+AGG | + | chr4_4:41733627-41733646 | Msa0681400:CDS | 35.0% |
| !!! | TGTTTTGGGAACCTTAATCA+GGG | + | chr4_4:41733628-41733647 | Msa0681400:CDS | 35.0% |
| ! | AGGAATTTTGTCCCTGATTA+AGG | - | chr4_4:41733642-41733661 | None:intergenic | 35.0% |
| ! | GAAATAAACACTCGCAGTTT+TGG | - | chr4_4:41733717-41733736 | None:intergenic | 35.0% |
| AGGTTAGATTAAGGTTGTGT+TGG | + | chr4_4:41733947-41733966 | Msa0681400:intron | 35.0% | |
| GTTGTTTGAATGTTGCATTG+AGG | + | chr4_4:41734180-41734199 | Msa0681400:intron | 35.0% | |
| CTGTGTAACAGAAGGATATA+TGG | - | chr4_4:41734226-41734245 | None:intergenic | 35.0% | |
| ! | TTGTTAGATTCTGAGAAAGC+TGG | + | chr4_4:41734267-41734286 | Msa0681400:intron | 35.0% |
| GAAGTTTCAGCATCATTGTT+AGG | - | chr4_4:41734324-41734343 | None:intergenic | 35.0% | |
| ! | TTCTTGCAATCCATTTTCAG+AGG | - | chr4_4:41734481-41734500 | None:intergenic | 35.0% |
| ! | TTCTTGCAATGCATTTTCAG+AGG | - | chr4_4:41734654-41734673 | None:intergenic | 35.0% |
| TGCATTGCAAGAACATAACA+AGG | + | chr4_4:41734661-41734680 | Msa0681400:CDS | 35.0% | |
| AGGAGACAACTCCTGATAAA+TGG | + | chr4_4:41731210-41731229 | Msa0681400:CDS | 40.0% | |
| AATTGGAACGAACACACTGT+TGG | + | chr4_4:41731315-41731334 | Msa0681400:CDS | 40.0% | |
| ATGGCAAATTAAACATGCGG+AGG | - | chr4_4:41731454-41731473 | None:intergenic | 40.0% | |
| GGCATGGCAAATTAAACATG+CGG | - | chr4_4:41731457-41731476 | None:intergenic | 40.0% | |
| AGTAGATATCTCAAGCCTCA+AGG | + | chr4_4:41731576-41731595 | Msa0681400:intron | 40.0% | |
| GTAGATATCTCAAGCCTCAA+GGG | + | chr4_4:41731577-41731596 | Msa0681400:intron | 40.0% | |
| TAGATATCTCAAGCCTCAAG+GGG | + | chr4_4:41731578-41731597 | Msa0681400:intron | 40.0% | |
| AGTCTAGAAAGATTGCCTGA+AGG | + | chr4_4:41731620-41731639 | Msa0681400:intron | 40.0% | |
| TGTATGGGTGGAAGATCAAT+AGG | + | chr4_4:41731656-41731675 | Msa0681400:intron | 40.0% | |
| TTGTTGTAGGAGGAATGGAA+AGG | + | chr4_4:41731810-41731829 | Msa0681400:intron | 40.0% | |
| TTGCAGATCTAATCCCAAAG+AGG | + | chr4_4:41732028-41732047 | Msa0681400:intron | 40.0% | |
| GATTATACAACGTTCAGCAC+AGG | + | chr4_4:41732139-41732158 | Msa0681400:intron | 40.0% | |
| GGTGCAAATAGCAAAATTCC+AGG | - | chr4_4:41732207-41732226 | None:intergenic | 40.0% | |
| CTGACGCCTATGAGATATAT+TGG | + | chr4_4:41732302-41732321 | Msa0681400:intron | 40.0% | |
| ! | AAAGCCAAAAGCGCAAAACA+TGG | + | chr4_4:41732445-41732464 | Msa0681400:intron | 40.0% |
| ! | AAGCCAAAAGCGCAAAACAT+GGG | + | chr4_4:41732446-41732465 | Msa0681400:intron | 40.0% |
| ! | ATACCCATGTTTTGCGCTTT+TGG | - | chr4_4:41732452-41732471 | None:intergenic | 40.0% |
| !!! | ACCAGGTTGTTAGCTTTTTC+CGG | - | chr4_4:41732990-41733009 | None:intergenic | 40.0% |
| ! | AAACCAGTATGCTAGGGTTT+TGG | - | chr4_4:41733078-41733097 | None:intergenic | 40.0% |
| AGAGAGAAACCAGTATGCTA+GGG | - | chr4_4:41733084-41733103 | None:intergenic | 40.0% | |
| ! | ACCGTTTCCAATGGAGTTTT+GGG | + | chr4_4:41733109-41733128 | Msa0681400:intron | 40.0% |
| TGTACGTACGTACGTGTATT+AGG | + | chr4_4:41733293-41733312 | Msa0681400:intron | 40.0% | |
| AGTTTCTCCAACCTTAACCT+CGG | - | chr4_4:41733365-41733384 | None:intergenic | 40.0% | |
| AGCAGCTATTCACATTTCTC+AGG | + | chr4_4:41733414-41733433 | Msa0681400:CDS | 40.0% | |
| TAAATAACCACAGGCTCTTC+TGG | - | chr4_4:41733584-41733603 | None:intergenic | 40.0% | |
| AGGTTCCCAAAACAATCTTC+TGG | - | chr4_4:41733622-41733641 | None:intergenic | 40.0% | |
| ACTGCGAGTGTTTATTTCAG+TGG | + | chr4_4:41733719-41733738 | Msa0681400:intron | 40.0% | |
| AACGTTTCAATTTACGGGTG+GGG | - | chr4_4:41734163-41734182 | None:intergenic | 40.0% | |
| CAACGTTTCAATTTACGGGT+GGG | - | chr4_4:41734164-41734183 | None:intergenic | 40.0% | |
| ACAACGTTTCAATTTACGGG+TGG | - | chr4_4:41734165-41734184 | None:intergenic | 40.0% | |
| AATTACGGCTGTGTAACAGA+AGG | - | chr4_4:41734234-41734253 | None:intergenic | 40.0% | |
| ! | GCAATTCCTGACTCTAAGAA+AGG | + | chr4_4:41734297-41734316 | Msa0681400:CDS | 40.0% |
| TTAGGACCTTTCTTAGAGTC+AGG | - | chr4_4:41734306-41734325 | None:intergenic | 40.0% | |
| AAGCATACCTGCTGCAATTA+CGG | - | chr4_4:41734368-41734387 | None:intergenic | 40.0% | |
| ! | AGGACATTCACCTCTGAAAA+TGG | + | chr4_4:41734468-41734487 | Msa0681400:intron | 40.0% |
| ! | ATTTTCAGAGGTGAATGTCC+TGG | - | chr4_4:41734469-41734488 | None:intergenic | 40.0% |
| ! | TGGTGATGCCAATGATGAGT+TGG | + | chr4_4:41731335-41731354 | Msa0681400:CDS | 45.0% |
| TCACTGTGACTATGCACTTG+AGG | - | chr4_4:41731478-41731497 | None:intergenic | 45.0% | |
| ATACAACGTTCAGCACAGGT+CGG | + | chr4_4:41732143-41732162 | Msa0681400:intron | 45.0% | |
| AGGTGCAAAGCGAAAATCCA+GGG | - | chr4_4:41732260-41732279 | None:intergenic | 45.0% | |
| TTCCTCAACTCTTGGATGTG+AGG | - | chr4_4:41732280-41732299 | None:intergenic | 45.0% | |
| TCCGGAAAAAGCTAACAACC+TGG | + | chr4_4:41732986-41733005 | Msa0681400:intron | 45.0% | |
| !!! | ATGCTAGGGTTTTGGAAGCT+GGG | - | chr4_4:41733070-41733089 | None:intergenic | 45.0% |
| !!! | TATGCTAGGGTTTTGGAAGC+TGG | - | chr4_4:41733071-41733090 | None:intergenic | 45.0% |
| CTTCCAAAACCCTAGCATAC+TGG | + | chr4_4:41733072-41733091 | Msa0681400:intron | 45.0% | |
| GAGAGAGAAACCAGTATGCT+AGG | - | chr4_4:41733085-41733104 | None:intergenic | 45.0% | |
| ! | CACCGTTTCCAATGGAGTTT+TGG | + | chr4_4:41733108-41733127 | Msa0681400:intron | 45.0% |
| CCCCAAAACTCCATTGGAAA+CGG | - | chr4_4:41733113-41733132 | None:intergenic | 45.0% | |
| ! | CCGTTTCCAATGGAGTTTTG+GGG | + | chr4_4:41733110-41733129 | Msa0681400:intron | 45.0% |
| AGGTTACCCCAAAACTCCAT+TGG | - | chr4_4:41733119-41733138 | None:intergenic | 45.0% | |
| GATCTTTGAATTAGCTGCCG+AGG | + | chr4_4:41733345-41733364 | Msa0681400:intron | 45.0% | |
| TGAATTAGCTGCCGAGGTTA+AGG | + | chr4_4:41733351-41733370 | Msa0681400:intron | 45.0% | |
| GTGAATAGCTGCTGCATCAT+GGG | - | chr4_4:41733407-41733426 | None:intergenic | 45.0% | |
| TGTGAATAGCTGCTGCATCA+TGG | - | chr4_4:41733408-41733427 | None:intergenic | 45.0% | |
| ! | TGGTGGCCAGAAGATTGTTT+TGG | + | chr4_4:41733613-41733632 | Msa0681400:CDS | 45.0% |
| ! | GGTGGCCAGAAGATTGTTTT+GGG | + | chr4_4:41733614-41733633 | Msa0681400:CDS | 45.0% |
| AGTGAGGAAGAAGGTGAAAC+TGG | + | chr4_4:41733890-41733909 | Msa0681400:intron | 45.0% | |
| GATGCTGAAACTTCCAAGTC+TGG | + | chr4_4:41734330-41734349 | Msa0681400:CDS | 45.0% | |
| TCTGTTGCAGAAGTTGCAAG+AGG | + | chr4_4:41734532-41734551 | Msa0681400:CDS | 45.0% | |
| !! | TTAATTTAAATTAATAGAAA+TGG | - | chr4_4:41731724-41731743 | None:intergenic | 5.0% |
| GTGACTATGCACTTGAGGCA+TGG | - | chr4_4:41731473-41731492 | None:intergenic | 50.0% | |
| CTGATGACAACAACCCCTTG+AGG | - | chr4_4:41731594-41731613 | None:intergenic | 50.0% | |
| AGGTGACGTCTCTGCATGTA+TGG | + | chr4_4:41731640-41731659 | Msa0681400:intron | 50.0% | |
| GGTGACGTCTCTGCATGTAT+GGG | + | chr4_4:41731641-41731660 | Msa0681400:intron | 50.0% | |
| !! | ATCGCTAAGGGTGTTCGAAG+AGG | - | chr4_4:41732122-41732141 | None:intergenic | 50.0% |
| GAGGTGCAAAGCGAAAATCC+AGG | - | chr4_4:41732261-41732280 | None:intergenic | 50.0% | |
| CACCTCACATCCAAGAGTTG+AGG | + | chr4_4:41732275-41732294 | Msa0681400:intron | 50.0% | |
| CGTCAGTCTTCCTCAACTCT+TGG | - | chr4_4:41732288-41732307 | None:intergenic | 50.0% | |
| AAATTTGCACCCCCTGACTC+AGG | + | chr4_4:41732892-41732911 | Msa0681400:intron | 50.0% | |
| AATTTGCACCCCCTGACTCA+GGG | + | chr4_4:41732893-41732912 | Msa0681400:intron | 50.0% | |
| CTCTCTCTCACCGTTTCCAA+TGG | + | chr4_4:41733100-41733119 | Msa0681400:intron | 50.0% | |
| TTAGCTGCCGAGGTTAAGGT+TGG | + | chr4_4:41733355-41733374 | Msa0681400:intron | 50.0% | |
| GCACTTGGCGCAGCAAATAA+AGG | + | chr4_4:41733554-41733573 | Msa0681400:CDS | 50.0% | |
| TCTTCTGGCCACCAAATACG+AGG | - | chr4_4:41733607-41733626 | None:intergenic | 50.0% | |
| GGAAGAAGGTGAAACTGGTG+AGG | + | chr4_4:41733895-41733914 | Msa0681400:intron | 50.0% | |
| GCTGAAACTTCCAAGTCTGG+AGG | + | chr4_4:41734333-41734352 | Msa0681400:CDS | 50.0% | |
| TCTCTTGCCGTAATTGCAGC+AGG | + | chr4_4:41734358-41734377 | Msa0681400:CDS | 50.0% | |
| CATGCAGAGACGTCACCTTC+AGG | - | chr4_4:41731638-41731657 | None:intergenic | 55.0% | |
| GACGTCTCTGCATGTATGGG+TGG | + | chr4_4:41731644-41731663 | Msa0681400:intron | 55.0% | |
| ACAGGTCGGCCATTGACACA+AGG | + | chr4_4:41732157-41732176 | Msa0681400:intron | 55.0% | |
| CAGGTCGGCCATTGACACAA+GGG | + | chr4_4:41732158-41732177 | Msa0681400:intron | 55.0% | |
| TGGATCCGCCCTTGTGTCAA+TGG | - | chr4_4:41732169-41732188 | None:intergenic | 55.0% | |
| ATTGACACAAGGGCGGATCC+AGG | + | chr4_4:41732168-41732187 | Msa0681400:intron | 55.0% | |
| TATCCAGGACCCTGAGTCAG+GGG | - | chr4_4:41732905-41732924 | None:intergenic | 55.0% | |
| GTATCCAGGACCCTGAGTCA+GGG | - | chr4_4:41732906-41732925 | None:intergenic | 55.0% | |
| GTCAATGCAGTGGCGTATCC+AGG | - | chr4_4:41732920-41732939 | None:intergenic | 55.0% | |
| ! | TTGGAAGCTGGGAGTGTGTG+TGG | - | chr4_4:41733059-41733078 | None:intergenic | 55.0% |
| CTGCTGCATCATGGGCATAC+GGG | - | chr4_4:41733399-41733418 | None:intergenic | 55.0% | |
| GCTGCTGCATCATGGGCATA+CGG | - | chr4_4:41733400-41733419 | None:intergenic | 55.0% | |
| AGGCATACCAGAAGAGCCTG+TGG | + | chr4_4:41733574-41733593 | Msa0681400:CDS | 55.0% | |
| !!! | TGTTTTGGCCTGCACGAGTG+AGG | + | chr4_4:41733874-41733893 | Msa0681400:intron | 55.0% |
| ACCTTCTTCCTCACTCGTGC+AGG | - | chr4_4:41733885-41733904 | None:intergenic | 55.0% | |
| GCAAGAGAGTCCTCCAGACT+TGG | - | chr4_4:41734346-41734365 | None:intergenic | 55.0% | |
| AAGGCCAAGCATGCTGCTAG+AGG | + | chr4_4:41734507-41734526 | Msa0681400:CDS | 55.0% | |
| GAGTCCTCTAGCAGCATGCT+TGG | - | chr4_4:41734514-41734533 | None:intergenic | 55.0% | |
| GTCGGCCATTGACACAAGGG+CGG | + | chr4_4:41732161-41732180 | Msa0681400:intron | 60.0% | |
| ATCCAGGACCCTGAGTCAGG+GGG | - | chr4_4:41732904-41732923 | None:intergenic | 60.0% | |
| CGTATCCAGGACCCTGAGTC+AGG | - | chr4_4:41732907-41732926 | None:intergenic | 60.0% | |
| GAGTGTGTGTGGCGGCTATG+GGG | - | chr4_4:41733048-41733067 | None:intergenic | 60.0% | |
| GGAGTGTGTGTGGCGGCTAT+GGG | - | chr4_4:41733049-41733068 | None:intergenic | 60.0% | |
| ! | GAAGCTGGGAGTGTGTGTGG+CGG | - | chr4_4:41733056-41733075 | None:intergenic | 60.0% |
| GCCTGCACGAGTGAGGAAGA+AGG | + | chr4_4:41733881-41733900 | Msa0681400:intron | 60.0% | |
| GTGTGTGGCGGCTATGGGGA+AGG | - | chr4_4:41733044-41733063 | None:intergenic | 65.0% | |
| ! | GGGAGTGTGTGTGGCGGCTA+TGG | - | chr4_4:41733050-41733069 | None:intergenic | 65.0% |
| CCAGGGTGTGCAGCTGCACC+TGG | - | chr4_4:41732189-41732208 | None:intergenic | 70.0% | |
| CCAGGTGCAGCTGCACACCC+TGG | + | chr4_4:41732186-41732205 | Msa0681400:intron | 70.0% | |
| CACCCCCTGACTCAGGGTCC+TGG | + | chr4_4:41732899-41732918 | Msa0681400:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 41731207 | 41734703 | 41731207 | ID=Msa0681400;Name=Msa0681400 |
| chr4_4 | mRNA | 41731207 | 41734703 | 41731207 | ID=Msa0681400-mRNA-1;Parent=Msa0681400;Name=Msa0681400-mRNA-1;_AED=0.44;_eAED=0.46;_QI=0|0|0|0.83|0.6|0.66|6|0|245 |
| chr4_4 | exon | 41731207 | 41731435 | 41731207 | ID=Msa0681400-mRNA-1:exon:9940;Parent=Msa0681400-mRNA-1 |
| chr4_4 | exon | 41733359 | 41733441 | 41733359 | ID=Msa0681400-mRNA-1:exon:9941;Parent=Msa0681400-mRNA-1 |
| chr4_4 | exon | 41733551 | 41733725 | 41733551 | ID=Msa0681400-mRNA-1:exon:9942;Parent=Msa0681400-mRNA-1 |
| chr4_4 | exon | 41734274 | 41734379 | 41734274 | ID=Msa0681400-mRNA-1:exon:9943;Parent=Msa0681400-mRNA-1 |
| chr4_4 | exon | 41734470 | 41734553 | 41734470 | ID=Msa0681400-mRNA-1:exon:9944;Parent=Msa0681400-mRNA-1 |
| chr4_4 | exon | 41734643 | 41734703 | 41734643 | ID=Msa0681400-mRNA-1:exon:9945;Parent=Msa0681400-mRNA-1 |
| chr4_4 | CDS | 41731207 | 41731435 | 41731207 | ID=Msa0681400-mRNA-1:cds;Parent=Msa0681400-mRNA-1 |
| chr4_4 | CDS | 41733359 | 41733441 | 41733359 | ID=Msa0681400-mRNA-1:cds;Parent=Msa0681400-mRNA-1 |
| chr4_4 | CDS | 41733551 | 41733725 | 41733551 | ID=Msa0681400-mRNA-1:cds;Parent=Msa0681400-mRNA-1 |
| chr4_4 | CDS | 41734274 | 41734379 | 41734274 | ID=Msa0681400-mRNA-1:cds;Parent=Msa0681400-mRNA-1 |
| chr4_4 | CDS | 41734470 | 41734553 | 41734470 | ID=Msa0681400-mRNA-1:cds;Parent=Msa0681400-mRNA-1 |
| chr4_4 | CDS | 41734643 | 41734703 | 41734643 | ID=Msa0681400-mRNA-1:cds;Parent=Msa0681400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
