Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682240 | XP_039682898.1 | 68.235 | 765 | 102 | 9 | 1 | 624 | 1 | 765 | 0.0 | 971 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682240 | sp|Q9SZL8|FRS5_ARATH | 29.119 | 261 | 167 | 5 | 32 | 292 | 70 | 312 | 1.57e-24 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682240 | A0A2Z6PJC0 | 61.243 | 676 | 113 | 9 | 65 | 624 | 1 | 643 | 0.0 | 758 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0682240 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682240 | MtrunA17_Chr3g0088371 | 80.000 | 130 | 23 | 1 | 498 | 624 | 29 | 158 | 3.95e-65 | 212 |
| Msa0682240 | MtrunA17_Chr1g0172971 | 82.051 | 117 | 20 | 1 | 1 | 116 | 1 | 117 | 2.17e-55 | 197 |
| Msa0682240 | MtrunA17_Chr6g0475591 | 91.781 | 73 | 6 | 0 | 188 | 260 | 1 | 73 | 1.04e-40 | 142 |
| Msa0682240 | MtrunA17_Chr7g0258861 | 30.968 | 310 | 177 | 9 | 36 | 330 | 8 | 295 | 4.58e-38 | 143 |
| Msa0682240 | MtrunA17_Chr2g0324011 | 30.263 | 304 | 182 | 9 | 36 | 329 | 8 | 291 | 1.48e-31 | 129 |
| Msa0682240 | MtrunA17_Chr2g0324011 | 25.322 | 233 | 146 | 7 | 296 | 517 | 356 | 571 | 1.05e-13 | 74.3 |
| Msa0682240 | MtrunA17_Chr1g0202341 | 29.630 | 297 | 182 | 8 | 34 | 325 | 50 | 324 | 3.32e-29 | 123 |
| Msa0682240 | MtrunA17_Chr3g0082121 | 29.167 | 288 | 174 | 7 | 41 | 325 | 49 | 309 | 2.22e-27 | 117 |
| Msa0682240 | MtrunA17_Chr3g0082121 | 28.859 | 298 | 176 | 10 | 295 | 579 | 381 | 655 | 4.63e-22 | 100 |
| Msa0682240 | MtrunA17_Chr8g0363841 | 28.966 | 290 | 176 | 10 | 40 | 322 | 22 | 288 | 2.75e-24 | 107 |
| Msa0682240 | MtrunA17_Chr2g0296781 | 27.575 | 301 | 187 | 8 | 39 | 334 | 1 | 275 | 5.93e-24 | 107 |
| Msa0682240 | MtrunA17_Chr5g0448761 | 27.547 | 265 | 172 | 5 | 31 | 292 | 56 | 303 | 1.48e-23 | 105 |
| Msa0682240 | MtrunA17_Chr1g0164591 | 30.049 | 203 | 130 | 3 | 131 | 330 | 1 | 194 | 4.62e-23 | 100 |
| Msa0682240 | MtrunA17_Chr1g0203721 | 25.940 | 266 | 158 | 7 | 40 | 294 | 68 | 305 | 6.42e-20 | 94.7 |
| Msa0682240 | MtrunA17_Chr1g0203721 | 24.242 | 330 | 223 | 11 | 277 | 591 | 394 | 711 | 8.55e-15 | 78.2 |
| Msa0682240 | MtrunA17_Chr5g0441581 | 24.709 | 344 | 209 | 12 | 32 | 366 | 26 | 328 | 8.71e-18 | 87.4 |
| Msa0682240 | MtrunA17_Chr2g0287651 | 25.483 | 259 | 170 | 5 | 39 | 294 | 79 | 317 | 1.38e-17 | 87.0 |
| Msa0682240 | MtrunA17_Chr6g0458391 | 27.559 | 254 | 147 | 6 | 41 | 294 | 231 | 447 | 7.21e-17 | 84.7 |
| Msa0682240 | MtrunA17_Chr1g0196541 | 26.459 | 257 | 163 | 7 | 39 | 294 | 1 | 232 | 2.99e-16 | 82.8 |
| Msa0682240 | MtrunA17_Chr6g0477261 | 30.323 | 155 | 105 | 2 | 180 | 331 | 7 | 161 | 5.07e-16 | 81.6 |
| Msa0682240 | MtrunA17_Chr5g0431001 | 25.253 | 297 | 194 | 10 | 40 | 325 | 66 | 345 | 6.21e-16 | 80.9 |
| Msa0682240 | MtrunA17_Chr1g0203051 | 23.482 | 247 | 166 | 4 | 50 | 294 | 94 | 319 | 4.64e-15 | 78.6 |
| Msa0682240 | MtrunA17_Chr1g0198761 | 25.448 | 279 | 179 | 8 | 26 | 294 | 38 | 297 | 1.88e-14 | 77.0 |
| Msa0682240 | MtrunA17_Chr2g0290391 | 24.906 | 265 | 163 | 8 | 38 | 287 | 54 | 297 | 7.01e-14 | 75.1 |
| Msa0682240 | MtrunA17_Chr2g0291591 | 24.746 | 295 | 167 | 10 | 16 | 294 | 44 | 299 | 8.34e-14 | 74.7 |
| Msa0682240 | MtrunA17_Chr2g0276841 | 24.303 | 251 | 166 | 7 | 49 | 294 | 84 | 315 | 8.38e-14 | 74.7 |
| Msa0682240 | MtrunA17_Chr2g0294841 | 25.969 | 258 | 158 | 10 | 41 | 287 | 51 | 286 | 1.74e-13 | 73.9 |
| Msa0682240 | MtrunA17_Chr5g0440451 | 22.222 | 315 | 187 | 11 | 34 | 325 | 42 | 321 | 7.25e-13 | 72.0 |
| Msa0682240 | MtrunA17_Chr2g0329031 | 25.000 | 260 | 154 | 8 | 41 | 294 | 20 | 244 | 8.76e-13 | 71.6 |
| Msa0682240 | MtrunA17_Chr1g0207551 | 23.179 | 302 | 199 | 9 | 31 | 325 | 30 | 305 | 1.63e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682240 | AT4G38180.1 | 29.119 | 261 | 167 | 5 | 32 | 292 | 70 | 312 | 1.59e-25 | 112 |
| Msa0682240 | AT5G28530.3 | 24.172 | 302 | 194 | 9 | 40 | 325 | 60 | 342 | 2.76e-16 | 83.2 |
| Msa0682240 | AT5G28530.2 | 24.172 | 302 | 194 | 9 | 40 | 325 | 60 | 342 | 2.76e-16 | 83.2 |
| Msa0682240 | AT5G28530.1 | 24.172 | 302 | 194 | 9 | 40 | 325 | 60 | 342 | 3.19e-16 | 82.8 |
| Msa0682240 | AT1G10240.2 | 23.904 | 251 | 167 | 7 | 49 | 294 | 62 | 293 | 2.22e-13 | 73.9 |
| Msa0682240 | AT1G10240.1 | 23.904 | 251 | 167 | 7 | 49 | 294 | 62 | 293 | 2.22e-13 | 73.9 |
| Msa0682240 | AT4G15090.1 | 25.000 | 280 | 186 | 8 | 50 | 325 | 66 | 325 | 1.04e-11 | 68.6 |
| Msa0682240 | AT4G15090.5 | 25.000 | 280 | 186 | 8 | 50 | 325 | 66 | 325 | 1.04e-11 | 68.6 |
| Msa0682240 | AT4G15090.3 | 25.000 | 280 | 186 | 8 | 50 | 325 | 66 | 325 | 1.04e-11 | 68.6 |
| Msa0682240 | AT4G15090.2 | 25.000 | 280 | 186 | 8 | 50 | 325 | 66 | 325 | 1.04e-11 | 68.6 |
| Msa0682240 | AT4G15090.4 | 25.000 | 280 | 186 | 8 | 50 | 325 | 66 | 325 | 1.04e-11 | 68.6 |
| Msa0682240 | AT1G76320.3 | 23.077 | 247 | 158 | 6 | 50 | 294 | 12 | 228 | 3.66e-11 | 66.6 |
| Msa0682240 | AT1G76320.1 | 23.077 | 247 | 158 | 6 | 50 | 294 | 12 | 228 | 5.13e-11 | 66.2 |
| Msa0682240 | AT1G76320.4 | 23.077 | 247 | 158 | 6 | 50 | 294 | 12 | 228 | 5.13e-11 | 66.2 |
| Msa0682240 | AT1G76320.2 | 23.077 | 247 | 158 | 6 | 50 | 294 | 12 | 228 | 5.21e-11 | 66.2 |
Find 102 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGACATAGCTAGTATATTT+TGG | 0.145659 | 4_4:-43339005 | Msa0682240:CDS |
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 4_4:+43337038 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 4_4:-43337907 | Msa0682240:CDS |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 4_4:-43338967 | Msa0682240:CDS |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 4_4:+43337044 | None:intergenic |
| GGTTTCAAATGTTGATGTTT+TGG | 0.317051 | 4_4:-43337610 | Msa0682240:CDS |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 4_4:-43338133 | Msa0682240:CDS |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 4_4:-43337192 | Msa0682240:CDS |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 4_4:+43338917 | None:intergenic |
| GTCTTTAGTGCCAACATTCA+TGG | 0.367086 | 4_4:+43337316 | None:intergenic |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 4_4:-43338033 | Msa0682240:CDS |
| GAGGGATAATCATGCCGATT+TGG | 0.371604 | 4_4:-43337874 | Msa0682240:CDS |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 4_4:-43337200 | Msa0682240:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 4_4:-43338910 | Msa0682240:intron |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 4_4:-43338918 | Msa0682240:CDS |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 4_4:-43338034 | Msa0682240:CDS |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 4_4:+43339447 | None:intergenic |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 4_4:-43337052 | Msa0682240:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 4_4:+43337062 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 4_4:-43337733 | Msa0682240:CDS |
| TCATGCCGATTTGGACTTCA+AGG | 0.401464 | 4_4:-43337865 | Msa0682240:CDS |
| GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 4_4:-43337167 | Msa0682240:CDS |
| CCATGATTCTTTATCACTAA+AGG | 0.406174 | 4_4:+43339686 | None:intergenic |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 4_4:-43339676 | Msa0682240:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 4_4:+43337562 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 4_4:-43339605 | Msa0682240:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 4_4:+43337561 | None:intergenic |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 4_4:-43339388 | Msa0682240:CDS |
| TGAATGTCTATAAGATATAT+AGG | 0.445219 | 4_4:-43339356 | Msa0682240:CDS |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 4_4:-43339405 | Msa0682240:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 4_4:+43337383 | None:intergenic |
| CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 4_4:-43339522 | Msa0682240:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 4_4:-43339240 | Msa0682240:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 4_4:-43339751 | Msa0682240:CDS |
| CTCAAGTAGCGCAAATGCTC+TGG | 0.460440 | 4_4:+43339300 | None:intergenic |
| GGCCTACTTCAGACTTTAAG+TGG | 0.462107 | 4_4:-43338079 | Msa0682240:CDS |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 4_4:-43339556 | Msa0682240:CDS |
| TGCAGCCTTGAAGTCCAAAT+CGG | 0.478878 | 4_4:+43337860 | None:intergenic |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 4_4:-43339195 | Msa0682240:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 4_4:+43337731 | None:intergenic |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 4_4:+43339411 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 4_4:-43339618 | Msa0682240:CDS |
| CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 4_4:-43337091 | Msa0682240:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 4_4:-43339127 | Msa0682240:CDS |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 4_4:-43339562 | Msa0682240:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 4_4:-43337717 | Msa0682240:CDS |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 4_4:-43338132 | Msa0682240:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 4_4:-43339114 | Msa0682240:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 4_4:-43337893 | Msa0682240:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 4_4:+43337813 | None:intergenic |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 4_4:-43339208 | Msa0682240:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 4_4:+43339022 | None:intergenic |
| GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 4_4:-43337092 | Msa0682240:CDS |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 4_4:-43338046 | Msa0682240:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 4_4:-43337548 | Msa0682240:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 4_4:+43339156 | None:intergenic |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 4_4:-43338028 | Msa0682240:CDS |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 4_4:+43337568 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 4_4:+43337925 | None:intergenic |
| TGTCTATAAGATATATAGGT+GGG | 0.523740 | 4_4:-43339352 | Msa0682240:CDS |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 4_4:-43337547 | Msa0682240:intron |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 4_4:+43337736 | None:intergenic |
| CTGAAATCTACCATGAATGT+TGG | 0.534154 | 4_4:-43337326 | Msa0682240:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 4_4:-43339511 | Msa0682240:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 4_4:+43337930 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 4_4:-43337716 | Msa0682240:CDS |
| CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 4_4:-43339686 | Msa0682240:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 4_4:-43339510 | Msa0682240:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.552634 | 4_4:+43339312 | None:intergenic |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 4_4:-43339060 | Msa0682240:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 4_4:-43339727 | Msa0682240:CDS |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 4_4:-43339192 | Msa0682240:CDS |
| TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 4_4:-43337240 | Msa0682240:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 4_4:+43337812 | None:intergenic |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 4_4:+43337080 | None:intergenic |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 4_4:+43337791 | None:intergenic |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 4_4:-43339201 | Msa0682240:CDS |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 4_4:-43337199 | Msa0682240:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 4_4:-43337204 | Msa0682240:CDS |
| ATAAGTTAGGAAAGATGATG+AGG | 0.591839 | 4_4:-43336799 | Msa0682240:intron |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 4_4:+43337124 | None:intergenic |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 4_4:-43339121 | Msa0682240:CDS |
| TTGAAGGAAACCTTTCCCCA+AGG | 0.600566 | 4_4:-43337578 | Msa0682240:CDS |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 4_4:+43337292 | None:intergenic |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 4_4:-43339207 | Msa0682240:CDS |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 4_4:-43339118 | Msa0682240:CDS |
| ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 4_4:-43337237 | Msa0682240:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 4_4:-43337815 | Msa0682240:CDS |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 4_4:-43337730 | Msa0682240:CDS |
| ATGTTGATAATGATAATGAG+AGG | 0.609132 | 4_4:-43337632 | Msa0682240:CDS |
| ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 4_4:-43339762 | Msa0682240:CDS |
| AGCCACTTAAAGTCTGAAGT+AGG | 0.617789 | 4_4:+43338077 | None:intergenic |
| TGTTGATAATGATAATGAGA+GGG | 0.618346 | 4_4:-43337631 | Msa0682240:CDS |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 4_4:+43339462 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 4_4:-43339187 | Msa0682240:CDS |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 4_4:+43337563 | None:intergenic |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 4_4:-43337892 | Msa0682240:CDS |
| ATGTCTATAAGATATATAGG+TGG | 0.643489 | 4_4:-43339353 | Msa0682240:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 4_4:+43337341 | None:intergenic |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 4_4:+43337771 | None:intergenic |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 4_4:-43337215 | Msa0682240:CDS |
| GCTCTGGTTTATGTAATGGA+TGG | 0.685972 | 4_4:+43339316 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTATGTTATAAGTT+AGG | - | chr4_4:43339752-43339771 | Msa0682240:CDS | 15.0% |
| !! | TTTAATTATGCATATAACAC+TGG | - | chr4_4:43336946-43336965 | Msa0682240:intron | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | - | chr4_4:43337002-43337021 | Msa0682240:intron | 20.0% |
| !! | TGAATGTCTATAAGATATAT+AGG | - | chr4_4:43337208-43337227 | Msa0682240:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr4_4:43337799-43337818 | Msa0682240:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+TGG | - | chr4_4:43337827-43337846 | Msa0682240:CDS | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | - | chr4_4:43338460-43338479 | Msa0682240:intron | 20.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | - | chr4_4:43336837-43336856 | Msa0682240:intron | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | + | chr4_4:43336998-43337017 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | - | chr4_4:43337008-43337027 | Msa0682240:intron | 25.0% |
| ! | ATGTCTATAAGATATATAGG+TGG | - | chr4_4:43337211-43337230 | Msa0682240:CDS | 25.0% |
| ! | TGTCTATAAGATATATAGGT+GGG | - | chr4_4:43337212-43337231 | Msa0682240:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr4_4:43337324-43337343 | Msa0682240:CDS | 25.0% |
| !! | AAGACATAGCTAGTATATTT+TGG | - | chr4_4:43337559-43337578 | Msa0682240:CDS | 25.0% |
| !! | AGACATAGCTAGTATATTTT+GGG | - | chr4_4:43337560-43337579 | Msa0682240:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr4_4:43337646-43337665 | Msa0682240:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr4_4:43337672-43337691 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | chr4_4:43337719-43337738 | Msa0682240:CDS | 25.0% |
| !!! | ATGTTCTGGTTTAGAATTAA+AGG | - | chr4_4:43337733-43337752 | Msa0682240:CDS | 25.0% |
| ! | TTCTGGTATATGTGTTAATT+TGG | - | chr4_4:43337756-43337775 | Msa0682240:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr4_4:43337819-43337838 | Msa0682240:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr4_4:43338080-43338099 | Msa0682240:CDS | 25.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | + | chr4_4:43338298-43338317 | None:intergenic | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | - | chr4_4:43338390-43338409 | Msa0682240:intron | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | - | chr4_4:43338464-43338483 | Msa0682240:intron | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr4_4:43338657-43338676 | Msa0682240:intron | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | + | chr4_4:43338796-43338815 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr4_4:43338831-43338850 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr4_4:43338831-43338850 | Msa0682240:intron | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | chr4_4:43338932-43338951 | Msa0682240:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | chr4_4:43338933-43338952 | Msa0682240:CDS | 25.0% |
| ! | AAAGTGATTATGAAAAAGCT+AGG | - | chr4_4:43339551-43339570 | Msa0682240:CDS | 25.0% |
| ! | AAGTGATTATGAAAAAGCTA+GGG | - | chr4_4:43339552-43339571 | Msa0682240:CDS | 25.0% |
| CCATGATTCTTTATCACTAA+AGG | + | chr4_4:43336881-43336900 | None:intergenic | 30.0% | |
| CCTTTAGTGATAAAGAATCA+TGG | - | chr4_4:43336878-43336897 | Msa0682240:intron | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | chr4_4:43336888-43336907 | Msa0682240:intron | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr4_4:43337053-43337072 | Msa0682240:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr4_4:43337054-43337073 | Msa0682240:CDS | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr4_4:43337143-43337162 | Msa0682240:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr4_4:43337176-43337195 | Msa0682240:CDS | 30.0% |
| ! | AAATGCTCTGGTTTATGTAA+TGG | + | chr4_4:43337255-43337274 | None:intergenic | 30.0% |
| AGAACATCTTATGAAGTGAT+GGG | - | chr4_4:43337357-43337376 | Msa0682240:CDS | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr4_4:43337401-43337420 | Msa0682240:intron | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr4_4:43337411-43337430 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | + | chr4_4:43337525-43337544 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | - | chr4_4:43337597-43337616 | Msa0682240:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr4_4:43337650-43337669 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr4_4:43337654-43337673 | Msa0682240:CDS | 30.0% | |
| ! | TGGTTTAGAATTAAAGGTTC+TGG | - | chr4_4:43337739-43337758 | Msa0682240:CDS | 30.0% |
| AAACACATATGATCTTTCCA+TGG | + | chr4_4:43337890-43337909 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | - | chr4_4:43338039-43338058 | Msa0682240:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr4_4:43338125-43338144 | None:intergenic | 30.0% | |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | + | chr4_4:43338239-43338258 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | - | chr4_4:43338289-43338308 | Msa0682240:intron | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr4_4:43338301-43338320 | Msa0682240:intron | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr4_4:43338346-43338365 | Msa0682240:intron | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr4_4:43338431-43338450 | Msa0682240:intron | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr4_4:43338432-43338451 | Msa0682240:intron | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr4_4:43338642-43338661 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | + | chr4_4:43338776-43338795 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr4_4:43338836-43338855 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr4_4:43338834-43338853 | Msa0682240:intron | 30.0% | |
| ! | GGTTTCAAATGTTGATGTTT+TGG | - | chr4_4:43338954-43338973 | Msa0682240:CDS | 30.0% |
| ATTATGATCTTCAAACCTTG+GGG | + | chr4_4:43339004-43339023 | None:intergenic | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | chr4_4:43339005-43339024 | None:intergenic | 30.0% | |
| !! | ATCATAATCGACTTGATGAA+AGG | - | chr4_4:43339016-43339035 | Msa0682240:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | chr4_4:43339017-43339036 | Msa0682240:CDS | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | - | chr4_4:43339113-43339132 | Msa0682240:CDS | 30.0% |
| !!! | TTCAAGATTTTGGAGTTCTT+AGG | - | chr4_4:43339123-43339142 | Msa0682240:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | - | chr4_4:43339182-43339201 | Msa0682240:CDS | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | - | chr4_4:43339349-43339368 | Msa0682240:CDS | 30.0% |
| !! | GAGGAGTTTCTTATTTCTAA+AGG | - | chr4_4:43339397-43339416 | Msa0682240:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr4_4:43339505-43339524 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | - | chr4_4:43339512-43339531 | Msa0682240:CDS | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | + | chr4_4:43339523-43339542 | None:intergenic | 30.0% | |
| ATAAGTTAGGAAAGATGATG+AGG | - | chr4_4:43339765-43339784 | Msa0682240:CDS | 30.0% | |
| ATATCAACTTCATCTGAGAG+TGG | - | chr4_4:43336802-43336821 | Msa0682240:intron | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | - | chr4_4:43336959-43336978 | Msa0682240:intron | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | - | chr4_4:43337042-43337061 | Msa0682240:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | chr4_4:43337079-43337098 | Msa0682240:CDS | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | chr4_4:43337120-43337139 | None:intergenic | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr4_4:43337137-43337156 | Msa0682240:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr4_4:43337142-43337161 | Msa0682240:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr4_4:43337356-43337375 | Msa0682240:CDS | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | - | chr4_4:43337437-43337456 | Msa0682240:intron | 35.0% | |
| !! | CACAAATTCTAAGGCAAGAT+AGG | + | chr4_4:43337857-43337876 | None:intergenic | 35.0% |
| TGTACAGAGCACAAATTCTA+AGG | + | chr4_4:43337866-43337885 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | chr4_4:43338142-43338161 | Msa0682240:intron | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | - | chr4_4:43338185-43338204 | Msa0682240:intron | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr4_4:43338314-43338333 | Msa0682240:intron | 35.0% |
| CTCATTCAAATCGTATGCAT+TGG | - | chr4_4:43338518-43338537 | Msa0682240:intron | 35.0% | |
| !! | TATGCATTGGTCTTCAGTTT+GGG | - | chr4_4:43338531-43338550 | Msa0682240:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr4_4:43338601-43338620 | Msa0682240:intron | 35.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | chr4_4:43338671-43338690 | Msa0682240:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr4_4:43338672-43338691 | Msa0682240:intron | 35.0% | |
| ! | CAAAGTTTTCACAGTTGAGA+AGG | - | chr4_4:43338891-43338910 | Msa0682240:intron | 35.0% |
| CGATTATGATCTTCAAACCT+TGG | + | chr4_4:43339006-43339025 | None:intergenic | 35.0% | |
| !!! | AAGATTTTGGAGTTCTTAGG+TGG | - | chr4_4:43339126-43339145 | Msa0682240:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | + | chr4_4:43339184-43339203 | None:intergenic | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | - | chr4_4:43339185-43339204 | Msa0682240:CDS | 35.0% |
| CTGAAATCTACCATGAATGT+TGG | - | chr4_4:43339238-43339257 | Msa0682240:CDS | 35.0% | |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | + | chr4_4:43339451-43339470 | None:intergenic | 35.0% |
| GACAGAAATTCCTTATAGCT+CGG | - | chr4_4:43339578-43339597 | Msa0682240:CDS | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | - | chr4_4:43339603-43339622 | Msa0682240:CDS | 35.0% | |
| ATCTGAGAGTGGACAATTGA+CGG | - | chr4_4:43336813-43336832 | Msa0682240:intron | 40.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | chr4_4:43337093-43337112 | None:intergenic | 40.0% |
| ! | GCTCTGGTTTATGTAATGGA+TGG | + | chr4_4:43337251-43337270 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTCA+AGG | - | chr4_4:43337363-43337382 | Msa0682240:CDS | 40.0% |
| !! | GCTAGTATATTTTGGGCAGA+TGG | - | chr4_4:43337567-43337586 | Msa0682240:CDS | 40.0% |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr4_4:43337985-43338004 | Msa0682240:CDS | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr4_4:43337989-43338008 | None:intergenic | 40.0% | |
| TACATTTCAGCTGCCTTTCT+TGG | - | chr4_4:43338109-43338128 | Msa0682240:CDS | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | + | chr4_4:43338250-43338269 | None:intergenic | 40.0% | |
| TCAAACCATATACACAGACC+AGG | - | chr4_4:43338249-43338268 | Msa0682240:intron | 40.0% | |
| ! | AGCCACTTAAAGTCTGAAGT+AGG | + | chr4_4:43338490-43338509 | None:intergenic | 40.0% |
| !! | GTATGCATTGGTCTTCAGTT+TGG | - | chr4_4:43338530-43338549 | Msa0682240:intron | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr4_4:43338637-43338656 | None:intergenic | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | - | chr4_4:43338847-43338866 | Msa0682240:intron | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr4_4:43338848-43338867 | Msa0682240:intron | 40.0% | |
| !! | GTTTTGGATGCAGAACTTGA+AGG | - | chr4_4:43338970-43338989 | Msa0682240:CDS | 40.0% |
| CATGTCGTATGTTTGAGAAC+CGG | - | chr4_4:43339079-43339098 | Msa0682240:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | chr4_4:43339080-43339099 | Msa0682240:CDS | 40.0% | |
| GATTTCAGCTTATCGACAGA+CGG | + | chr4_4:43339226-43339245 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | + | chr4_4:43339251-43339270 | None:intergenic | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | + | chr4_4:43339275-43339294 | None:intergenic | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | - | chr4_4:43339360-43339379 | Msa0682240:CDS | 40.0% | |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | + | chr4_4:43339443-43339462 | None:intergenic | 40.0% |
| AGTCGCTTCTTTGACCTAAT+TGG | + | chr4_4:43339529-43339548 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | + | chr4_4:43339591-43339610 | None:intergenic | 40.0% | |
| AGAACTGGACTGTCACATGT+TGG | + | chr4_4:43337105-43337124 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr4_4:43337147-43337166 | Msa0682240:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr4_4:43337156-43337175 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr4_4:43337159-43337178 | Msa0682240:CDS | 45.0% |
| GACAACTCGTCAAAAGGAGA+TGG | - | chr4_4:43337443-43337462 | Msa0682240:intron | 45.0% | |
| AACTCGTCAAAAGGAGATGG+TGG | - | chr4_4:43337446-43337465 | Msa0682240:intron | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | - | chr4_4:43337504-43337523 | Msa0682240:intron | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr4_4:43337545-43337564 | None:intergenic | 45.0% | |
| ATTTGTGCTCTGTACAGCCA+TGG | - | chr4_4:43337870-43337889 | Msa0682240:CDS | 45.0% | |
| ACCATATACACAGACCAGGT+TGG | - | chr4_4:43338253-43338272 | Msa0682240:intron | 45.0% | |
| ACCAACCTGGTCTGTGTATA+TGG | + | chr4_4:43338257-43338276 | None:intergenic | 45.0% | |
| GGCCTACTTCAGACTTTAAG+TGG | - | chr4_4:43338485-43338504 | Msa0682240:intron | 45.0% | |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | - | chr4_4:43338536-43338555 | Msa0682240:intron | 45.0% |
| ! | GTGAGGTCACATTTTACAGC+TGG | - | chr4_4:43338553-43338572 | Msa0682240:intron | 45.0% |
| ! | GAGGGATAATCATGCCGATT+TGG | - | chr4_4:43338690-43338709 | Msa0682240:intron | 45.0% |
| !! | TCATGCCGATTTGGACTTCA+AGG | - | chr4_4:43338699-43338718 | Msa0682240:intron | 45.0% |
| TGCAGCCTTGAAGTCCAAAT+CGG | + | chr4_4:43338707-43338726 | None:intergenic | 45.0% | |
| ATCCCAACAGTCAGCTTATG+CGG | - | chr4_4:43338749-43338768 | Msa0682240:intron | 45.0% | |
| TTGAAGGAAACCTTTCCCCA+AGG | - | chr4_4:43338986-43339005 | Msa0682240:CDS | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | chr4_4:43338999-43339018 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | chr4_4:43339081-43339100 | Msa0682240:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | + | chr4_4:43339101-43339120 | None:intergenic | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | - | chr4_4:43339372-43339391 | Msa0682240:CDS | 45.0% | |
| CTGTCTGTGAACCATCTGTT+GGG | - | chr4_4:43339473-43339492 | Msa0682240:CDS | 45.0% | |
| CTCAAGTAGCGCAAATGCTC+TGG | + | chr4_4:43337267-43337286 | None:intergenic | 50.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | - | chr4_4:43337369-43337388 | Msa0682240:CDS | 50.0% |
| ACTTCAACAACGCACCAACC+TGG | + | chr4_4:43338270-43338289 | None:intergenic | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | - | chr4_4:43338321-43338340 | Msa0682240:intron | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | - | chr4_4:43338322-43338341 | Msa0682240:intron | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | + | chr4_4:43338754-43338773 | None:intergenic | 50.0% | |
| GGGTTGTCACAGTCGACATT+AGG | - | chr4_4:43339037-43339056 | Msa0682240:CDS | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | - | chr4_4:43339324-43339343 | Msa0682240:CDS | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | - | chr4_4:43339365-43339384 | Msa0682240:CDS | 50.0% | |
| GCTGTCTGTGAACCATCTGT+TGG | - | chr4_4:43339472-43339491 | Msa0682240:CDS | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | + | chr4_4:43339487-43339506 | None:intergenic | 50.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | - | chr4_4:43337372-43337391 | Msa0682240:CDS | 55.0% |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr4_4:43337450-43337469 | Msa0682240:intron | 55.0% |
| GGACCGCATAAGCTGACTGT+TGG | + | chr4_4:43338755-43338774 | None:intergenic | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | - | chr4_4:43339364-43339383 | Msa0682240:CDS | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | - | chr4_4:43339378-43339397 | Msa0682240:CDS | 55.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | - | chr4_4:43337377-43337396 | Msa0682240:CDS | 60.0% | |
| ACGTGTTTGCGCAGATGCGG+AGG | - | chr4_4:43339327-43339346 | Msa0682240:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 43336793 | 43339793 | 43336793 | ID=Msa0682240;Name=Msa0682240 |
| chr4_4 | mRNA | 43336793 | 43339793 | 43336793 | ID=Msa0682240-mRNA-1;Parent=Msa0682240;Name=Msa0682240-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|0.75|1|1|4|0|630 |
| chr4_4 | exon | 43338911 | 43339793 | 43338911 | ID=Msa0682240-mRNA-1:exon:10548;Parent=Msa0682240-mRNA-1 |
| chr4_4 | exon | 43337548 | 43338158 | 43337548 | ID=Msa0682240-mRNA-1:exon:10547;Parent=Msa0682240-mRNA-1 |
| chr4_4 | exon | 43337033 | 43337411 | 43337033 | ID=Msa0682240-mRNA-1:exon:10546;Parent=Msa0682240-mRNA-1 |
| chr4_4 | exon | 43336793 | 43336812 | 43336793 | ID=Msa0682240-mRNA-1:exon:10545;Parent=Msa0682240-mRNA-1 |
| chr4_4 | CDS | 43338911 | 43339793 | 43338911 | ID=Msa0682240-mRNA-1:cds;Parent=Msa0682240-mRNA-1 |
| chr4_4 | CDS | 43337548 | 43338158 | 43337548 | ID=Msa0682240-mRNA-1:cds;Parent=Msa0682240-mRNA-1 |
| chr4_4 | CDS | 43337033 | 43337411 | 43337033 | ID=Msa0682240-mRNA-1:cds;Parent=Msa0682240-mRNA-1 |
| chr4_4 | CDS | 43336793 | 43336812 | 43336793 | ID=Msa0682240-mRNA-1:cds;Parent=Msa0682240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
