Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684060 | KEH30134.1 | 95.736 | 258 | 6 | 3 | 1 | 254 | 1 | 257 | 2.32e-179 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684060 | sp|Q6X7K1|WOX2_ARATH | 41.245 | 257 | 114 | 8 | 17 | 250 | 6 | 248 | 2.34e-52 | 173 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684060 | A0A072UK53 | 95.736 | 258 | 6 | 3 | 1 | 254 | 1 | 257 | 1.11e-179 | 503 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0684060 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684060 | MtrunA17_Chr4g0031341 | 95.736 | 258 | 6 | 3 | 1 | 254 | 1 | 257 | 0.0 | 503 |
| Msa0684060 | MtrunA17_Chr8g0392991 | 56.383 | 94 | 35 | 2 | 12 | 99 | 80 | 173 | 5.80e-28 | 109 |
| Msa0684060 | MtrunA17_Chr1g0153171 | 61.644 | 73 | 28 | 0 | 20 | 92 | 85 | 157 | 9.97e-27 | 103 |
| Msa0684060 | MtrunA17_Chr4g0043891 | 67.692 | 65 | 21 | 0 | 23 | 87 | 6 | 70 | 4.13e-26 | 102 |
| Msa0684060 | MtrunA17_Chr7g0238431 | 66.667 | 66 | 22 | 0 | 23 | 88 | 6 | 71 | 5.41e-26 | 100 |
| Msa0684060 | MtrunA17_Chr5g0405351 | 68.182 | 66 | 20 | 1 | 22 | 86 | 27 | 92 | 5.08e-25 | 100 |
| Msa0684060 | MtrunA17_Chr5g0436661 | 51.220 | 82 | 39 | 1 | 10 | 90 | 17 | 98 | 2.64e-24 | 95.9 |
| Msa0684060 | MtrunA17_Chr8g0385441 | 65.455 | 55 | 19 | 0 | 34 | 88 | 91 | 145 | 2.71e-20 | 84.7 |
| Msa0684060 | MtrunA17_Chr3g0125111 | 63.636 | 55 | 20 | 0 | 34 | 88 | 89 | 143 | 5.48e-20 | 84.0 |
| Msa0684060 | MtrunA17_Chr2g0283141 | 48.387 | 62 | 32 | 0 | 25 | 86 | 55 | 116 | 3.26e-14 | 71.6 |
| Msa0684060 | MtrunA17_Chr7g0223471 | 45.161 | 62 | 34 | 0 | 25 | 86 | 47 | 108 | 1.23e-13 | 69.7 |
| Msa0684060 | MtrunA17_Chr1g0212511 | 46.154 | 65 | 35 | 0 | 20 | 84 | 80 | 144 | 4.59e-13 | 67.0 |
| Msa0684060 | MtrunA17_Chr3g0144021 | 40.909 | 66 | 39 | 0 | 20 | 85 | 77 | 142 | 8.05e-12 | 63.2 |
| Msa0684060 | MtrunA17_Chr7g0222981 | 45.161 | 62 | 34 | 0 | 25 | 86 | 68 | 129 | 2.80e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684060 | AT5G59340.1 | 41.245 | 257 | 114 | 8 | 17 | 250 | 6 | 248 | 2.38e-53 | 173 |
| Msa0684060 | AT3G18010.1 | 45.312 | 128 | 57 | 2 | 20 | 134 | 71 | 198 | 6.37e-29 | 112 |
| Msa0684060 | AT1G46480.2 | 65.672 | 67 | 23 | 0 | 24 | 90 | 89 | 155 | 3.40e-26 | 101 |
| Msa0684060 | AT1G46480.1 | 36.416 | 173 | 99 | 3 | 24 | 196 | 89 | 250 | 5.52e-26 | 102 |
| Msa0684060 | AT2G28610.1 | 62.687 | 67 | 25 | 0 | 22 | 88 | 5 | 71 | 7.94e-25 | 99.4 |
| Msa0684060 | AT3G11260.1 | 50.000 | 80 | 40 | 0 | 13 | 92 | 12 | 91 | 8.26e-25 | 97.8 |
| Msa0684060 | AT5G05770.1 | 54.054 | 74 | 34 | 0 | 21 | 94 | 25 | 98 | 1.17e-24 | 95.5 |
| Msa0684060 | AT2G17950.1 | 63.636 | 66 | 23 | 1 | 22 | 86 | 35 | 100 | 2.25e-23 | 96.3 |
| Msa0684060 | AT2G01500.1 | 64.407 | 59 | 21 | 0 | 21 | 79 | 57 | 115 | 5.60e-22 | 92.4 |
| Msa0684060 | AT1G20700.2 | 40.506 | 79 | 47 | 0 | 13 | 91 | 21 | 99 | 7.28e-15 | 70.5 |
| Msa0684060 | AT5G45980.1 | 51.613 | 62 | 30 | 0 | 25 | 86 | 55 | 116 | 7.87e-15 | 73.2 |
| Msa0684060 | AT1G20700.1 | 40.506 | 79 | 47 | 0 | 13 | 91 | 83 | 161 | 1.88e-14 | 70.5 |
| Msa0684060 | AT1G20700.3 | 40.506 | 79 | 47 | 0 | 13 | 91 | 83 | 161 | 1.90e-14 | 70.5 |
| Msa0684060 | AT2G33880.1 | 48.387 | 62 | 32 | 0 | 25 | 86 | 55 | 116 | 9.07e-14 | 70.5 |
| Msa0684060 | AT2G33880.2 | 48.387 | 62 | 32 | 0 | 25 | 86 | 55 | 116 | 9.22e-14 | 70.5 |
| Msa0684060 | AT4G35550.1 | 40.278 | 72 | 43 | 0 | 14 | 85 | 88 | 159 | 3.07e-13 | 68.2 |
| Msa0684060 | AT1G20710.1 | 50.000 | 54 | 27 | 0 | 32 | 85 | 86 | 139 | 1.97e-11 | 62.0 |
Find 47 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATAGGTGAAGGATAAA+TGG | 0.223363 | 4_4:-47234525 | None:intergenic |
| AATCAAGATCACGGTTATAA+TGG | 0.261015 | 4_4:+47235773 | Msa0684060:CDS |
| TTCTGCAGGACAAGGTTCTT+AGG | 0.334683 | 4_4:+47235826 | Msa0684060:CDS |
| CTGTAACCAAAGTCATAGTT+AGG | 0.337773 | 4_4:-47235605 | None:intergenic |
| AGTTCCACTGATACACATTC+TGG | 0.341293 | 4_4:+47235728 | Msa0684060:CDS |
| AACATACCATTTGGACAAAT+AGG | 0.347632 | 4_4:-47234539 | None:intergenic |
| ACTGCATCCAACTGGCATAT+TGG | 0.347683 | 4_4:+47235655 | Msa0684060:CDS |
| ACTGCAGGTAGAAGCACTTT+TGG | 0.360138 | 4_4:-47235482 | None:intergenic |
| TAGCTTATTTCATGACTTTG+TGG | 0.366655 | 4_4:-47235446 | None:intergenic |
| CCTTCACCTATTTGTCCAAA+TGG | 0.376093 | 4_4:+47234533 | Msa0684060:CDS |
| ATCAAGATCACGGTTATAAT+GGG | 0.412092 | 4_4:+47235774 | Msa0684060:CDS |
| ATTAATGAGGAGGGTTCAAA+TGG | 0.414428 | 4_4:+47234245 | Msa0684060:CDS |
| TGTGGTTGTGGTACGCAATA+TGG | 0.424892 | 4_4:-47235428 | None:intergenic |
| ATTTCATGACTTTGTGGTTG+TGG | 0.425330 | 4_4:-47235440 | None:intergenic |
| CAAATAGGTGAAGGATAAAT+GGG | 0.425469 | 4_4:-47234524 | None:intergenic |
| TCTTGTATTTCTTCAGCACT+TGG | 0.437582 | 4_4:-47234359 | None:intergenic |
| TTGTTTCCACTGCATCCAAC+TGG | 0.438638 | 4_4:+47235647 | Msa0684060:CDS |
| GCTGAGAAAGTTATGTCAAA+TGG | 0.451730 | 4_4:+47235524 | Msa0684060:CDS |
| AGAATCCCTAACTATGACTT+TGG | 0.454278 | 4_4:+47235599 | Msa0684060:CDS |
| TTCCCTTCCAATATGCCAGT+TGG | 0.473137 | 4_4:-47235662 | None:intergenic |
| ACTGCTAGGCTTAGAGTGTA+TGG | 0.483688 | 4_4:+47234386 | Msa0684060:CDS |
| TTGGAGAATTTGTATAAGCA+AGG | 0.498360 | 4_4:+47234326 | Msa0684060:CDS |
| AAAAGAACAAATAAGTATGT+TGG | 0.504717 | 4_4:+47234307 | Msa0684060:CDS |
| CATCCAACTGGCATATTGGA+AGG | 0.509666 | 4_4:+47235659 | Msa0684060:CDS |
| TTACAGTAATCAAGAAACAT+TGG | 0.520782 | 4_4:+47235622 | Msa0684060:CDS |
| GGTGAAGGATAAATGGGTTG+AGG | 0.539516 | 4_4:-47234518 | None:intergenic |
| TGTAACCAAAGTCATAGTTA+GGG | 0.542299 | 4_4:-47235604 | None:intergenic |
| TTTAATAATTCTGCAGGACA+AGG | 0.556573 | 4_4:+47235818 | Msa0684060:CDS |
| TTGACATAACTTTCTCAGCA+TGG | 0.557501 | 4_4:-47235520 | None:intergenic |
| TTCCTTCTAAAACCTACTGC+AGG | 0.572590 | 4_4:-47235497 | None:intergenic |
| AATAATGAGATTAATGAGGA+GGG | 0.573895 | 4_4:+47234236 | Msa0684060:CDS |
| CTGAAACAATAGAAGACACC+TGG | 0.584011 | 4_4:-47235694 | None:intergenic |
| TAATAATGAGATTAATGAGG+AGG | 0.585231 | 4_4:+47234235 | Msa0684060:CDS |
| AAAGTGCTTCTACCTGCAGT+AGG | 0.586289 | 4_4:+47235485 | Msa0684060:CDS |
| AATATGCCAGTTGGATGCAG+TGG | 0.586423 | 4_4:-47235653 | None:intergenic |
| TTAATGAGGAGGGTTCAAAT+GGG | 0.588886 | 4_4:+47234246 | Msa0684060:CDS |
| AGAAGAAGAAGAATAATGGA+GGG | 0.590346 | 4_4:+47234206 | None:intergenic |
| CATGATATCAATCAAGATCA+CGG | 0.597311 | 4_4:+47235764 | Msa0684060:CDS |
| AGAACCAGAATGTGTATCAG+TGG | 0.599607 | 4_4:-47235732 | None:intergenic |
| AGAGTGTATGGTCACATCGA+AGG | 0.601558 | 4_4:+47234398 | Msa0684060:CDS |
| AAATATCTGCAATAGTCCAA+TGG | 0.604277 | 4_4:+47235553 | Msa0684060:CDS |
| CCATTTGGACAAATAGGTGA+AGG | 0.604508 | 4_4:-47234533 | None:intergenic |
| AAATACAAGAAATCACTGCT+AGG | 0.611419 | 4_4:+47234372 | Msa0684060:CDS |
| GAATAATAATGAGATTAATG+AGG | 0.611694 | 4_4:+47234232 | Msa0684060:CDS |
| ATCCAACTGGCATATTGGAA+GGG | 0.612491 | 4_4:+47235660 | Msa0684060:CDS |
| GGAAGGGAAAACAACTGACC+AGG | 0.627194 | 4_4:+47235676 | Msa0684060:CDS |
| GTATTTCATCAAGTTCACGA+TGG | 0.702362 | 4_4:+47234276 | Msa0684060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTCTTATTATATTTTCA+TGG | + | chr4_4:47234636-47234655 | Msa0684060:intron | 15.0% |
| !! | ATAACTAATAGTTAAAAACA+AGG | - | chr4_4:47234924-47234943 | None:intergenic | 15.0% |
| !!! | AACTAAAAAAGCATTAAAAA+AGG | + | chr4_4:47235233-47235252 | Msa0684060:intron | 15.0% |
| !!! | GGTAATTGAATTATTATTTT+TGG | + | chr4_4:47235387-47235406 | Msa0684060:intron | 15.0% |
| !! | TTATTAAAAAAGTCAAAGAA+GGG | - | chr4_4:47235806-47235825 | None:intergenic | 15.0% |
| !! | ATTATTAAAAAAGTCAAAGA+AGG | - | chr4_4:47235807-47235826 | None:intergenic | 15.0% |
| !!! | TTGTTCTTATTATATTTTCA+TGG | + | chr4_4:47234636-47234655 | Msa0684060:intron | 15.0% |
| !! | ATAACTAATAGTTAAAAACA+AGG | - | chr4_4:47234924-47234943 | None:intergenic | 15.0% |
| !!! | AACTAAAAAAGCATTAAAAA+AGG | + | chr4_4:47235233-47235252 | Msa0684060:intron | 15.0% |
| !!! | GGTAATTGAATTATTATTTT+TGG | + | chr4_4:47235387-47235406 | Msa0684060:intron | 15.0% |
| !! | TTATTAAAAAAGTCAAAGAA+GGG | - | chr4_4:47235806-47235825 | None:intergenic | 15.0% |
| !! | ATTATTAAAAAAGTCAAAGA+AGG | - | chr4_4:47235807-47235826 | None:intergenic | 15.0% |
| !! | GAATAATAATGAGATTAATG+AGG | + | chr4_4:47234232-47234251 | Msa0684060:CDS | 20.0% |
| !!! | TACTTATTTGTTCTTTTGTT+GGG | - | chr4_4:47234304-47234323 | None:intergenic | 20.0% |
| !!! | ATACTTATTTGTTCTTTTGT+TGG | - | chr4_4:47234305-47234324 | None:intergenic | 20.0% |
| !! | AAAAGAACAAATAAGTATGT+TGG | + | chr4_4:47234307-47234326 | Msa0684060:CDS | 20.0% |
| !! | CAAAAACATTGATATGAAAA+TGG | - | chr4_4:47234619-47234638 | None:intergenic | 20.0% |
| !! | ATCTATATTGTGGTAAAATA+TGG | + | chr4_4:47234868-47234887 | Msa0684060:intron | 20.0% |
| !! | TCTATATTGTGGTAAAATAT+GGG | + | chr4_4:47234869-47234888 | Msa0684060:intron | 20.0% |
| !! | TGAAAATGAGATTTATTGAA+AGG | - | chr4_4:47235021-47235040 | None:intergenic | 20.0% |
| !!! | TTCAATAAATCTCATTTTCA+TGG | + | chr4_4:47235021-47235040 | Msa0684060:intron | 20.0% |
| !! | ACCAAAAATAAAATACTAGA+AGG | - | chr4_4:47235113-47235132 | None:intergenic | 20.0% |
| !!! | ATGTTTTCATTATATACCAT+TGG | - | chr4_4:47235572-47235591 | None:intergenic | 20.0% |
| !! | GAATAATAATGAGATTAATG+AGG | + | chr4_4:47234232-47234251 | Msa0684060:CDS | 20.0% |
| !!! | TACTTATTTGTTCTTTTGTT+GGG | - | chr4_4:47234304-47234323 | None:intergenic | 20.0% |
| !!! | ATACTTATTTGTTCTTTTGT+TGG | - | chr4_4:47234305-47234324 | None:intergenic | 20.0% |
| !! | AAAAGAACAAATAAGTATGT+TGG | + | chr4_4:47234307-47234326 | Msa0684060:CDS | 20.0% |
| !! | CAAAAACATTGATATGAAAA+TGG | - | chr4_4:47234619-47234638 | None:intergenic | 20.0% |
| !! | ATCTATATTGTGGTAAAATA+TGG | + | chr4_4:47234868-47234887 | Msa0684060:intron | 20.0% |
| !! | TCTATATTGTGGTAAAATAT+GGG | + | chr4_4:47234869-47234888 | Msa0684060:intron | 20.0% |
| !! | TGAAAATGAGATTTATTGAA+AGG | - | chr4_4:47235021-47235040 | None:intergenic | 20.0% |
| !!! | TTCAATAAATCTCATTTTCA+TGG | + | chr4_4:47235021-47235040 | Msa0684060:intron | 20.0% |
| !! | ACCAAAAATAAAATACTAGA+AGG | - | chr4_4:47235113-47235132 | None:intergenic | 20.0% |
| !!! | ATGTTTTCATTATATACCAT+TGG | - | chr4_4:47235572-47235591 | None:intergenic | 20.0% |
| ! | TAATAATGAGATTAATGAGG+AGG | + | chr4_4:47234235-47234254 | Msa0684060:CDS | 25.0% |
| ! | AATAATGAGATTAATGAGGA+GGG | + | chr4_4:47234236-47234255 | Msa0684060:CDS | 25.0% |
| ! | TATAACCTAGAACTAGAAAA+AGG | - | chr4_4:47234576-47234595 | None:intergenic | 25.0% |
| ! | TATCTTTGTACGACATAAAA+TGG | + | chr4_4:47234764-47234783 | Msa0684060:intron | 25.0% |
| !!! | TTGTTGTTGTATCTTTTTCA+TGG | + | chr4_4:47234834-47234853 | Msa0684060:intron | 25.0% |
| ! | TAAAACGGGATTTATATAGA+GGG | - | chr4_4:47234987-47235006 | None:intergenic | 25.0% |
| ! | AAGGTTAATTTCTCCTAAAA+CGG | - | chr4_4:47235002-47235021 | None:intergenic | 25.0% |
| !!! | GCCTTCTAGTATTTTATTTT+TGG | + | chr4_4:47235109-47235128 | Msa0684060:intron | 25.0% |
| ! | CAAATAAATTACTCCATCTT+TGG | - | chr4_4:47235282-47235301 | None:intergenic | 25.0% |
| ! | TTACAGTAATCAAGAAACAT+TGG | + | chr4_4:47235622-47235641 | Msa0684060:CDS | 25.0% |
| !!! | GACTTTTTTAATAATTCTGC+AGG | + | chr4_4:47235812-47235831 | Msa0684060:CDS | 25.0% |
| ! | TAATAATGAGATTAATGAGG+AGG | + | chr4_4:47234235-47234254 | Msa0684060:CDS | 25.0% |
| ! | AATAATGAGATTAATGAGGA+GGG | + | chr4_4:47234236-47234255 | Msa0684060:CDS | 25.0% |
| ! | TATAACCTAGAACTAGAAAA+AGG | - | chr4_4:47234576-47234595 | None:intergenic | 25.0% |
| ! | TATCTTTGTACGACATAAAA+TGG | + | chr4_4:47234764-47234783 | Msa0684060:intron | 25.0% |
| !!! | TTGTTGTTGTATCTTTTTCA+TGG | + | chr4_4:47234834-47234853 | Msa0684060:intron | 25.0% |
| ! | TAAAACGGGATTTATATAGA+GGG | - | chr4_4:47234987-47235006 | None:intergenic | 25.0% |
| ! | AAGGTTAATTTCTCCTAAAA+CGG | - | chr4_4:47235002-47235021 | None:intergenic | 25.0% |
| !!! | GCCTTCTAGTATTTTATTTT+TGG | + | chr4_4:47235109-47235128 | Msa0684060:intron | 25.0% |
| ! | CAAATAAATTACTCCATCTT+TGG | - | chr4_4:47235282-47235301 | None:intergenic | 25.0% |
| ! | TTACAGTAATCAAGAAACAT+TGG | + | chr4_4:47235622-47235641 | Msa0684060:CDS | 25.0% |
| !!! | GACTTTTTTAATAATTCTGC+AGG | + | chr4_4:47235812-47235831 | Msa0684060:CDS | 25.0% |
| TTGGAGAATTTGTATAAGCA+AGG | + | chr4_4:47234326-47234345 | Msa0684060:CDS | 30.0% | |
| AAATACAAGAAATCACTGCT+AGG | + | chr4_4:47234372-47234391 | Msa0684060:CDS | 30.0% | |
| ! | AAGGAAAGAATGTCTTTTAC+TGG | + | chr4_4:47234417-47234436 | Msa0684060:CDS | 30.0% |
| CAAATAGGTGAAGGATAAAT+GGG | - | chr4_4:47234527-47234546 | None:intergenic | 30.0% | |
| ACAAATAGGTGAAGGATAAA+TGG | - | chr4_4:47234528-47234547 | None:intergenic | 30.0% | |
| AACATACCATTTGGACAAAT+AGG | - | chr4_4:47234542-47234561 | None:intergenic | 30.0% | |
| !!! | TTCTTCCTTTTTCTAGTTCT+AGG | + | chr4_4:47234568-47234587 | Msa0684060:intron | 30.0% |
| ! | AACCTAATGAGTACTACTTT+TGG | - | chr4_4:47234678-47234697 | None:intergenic | 30.0% |
| CCATATTTAAATTGTGCTAG+CGG | + | chr4_4:47234703-47234722 | Msa0684060:intron | 30.0% | |
| TTCTGCAAACATCTATATTG+TGG | + | chr4_4:47234858-47234877 | Msa0684060:intron | 30.0% | |
| ! | AAAACAAGGTGCATTTTCAA+CGG | - | chr4_4:47234910-47234929 | None:intergenic | 30.0% |
| CTAAAACGGGATTTATATAG+AGG | - | chr4_4:47234988-47235007 | None:intergenic | 30.0% | |
| ! | CTCTATATAAATCCCGTTTT+AGG | + | chr4_4:47234986-47235005 | Msa0684060:intron | 30.0% |
| AGGTTAATTTCTCCTAAAAC+GGG | - | chr4_4:47235001-47235020 | None:intergenic | 30.0% | |
| TTTCTTCATGCAAATGTGTT+TGG | + | chr4_4:47235171-47235190 | Msa0684060:intron | 30.0% | |
| AACAGAAACATAACCAAAGA+TGG | + | chr4_4:47235266-47235285 | Msa0684060:intron | 30.0% | |
| TAGCTTATTTCATGACTTTG+TGG | - | chr4_4:47235449-47235468 | None:intergenic | 30.0% | |
| AAATATCTGCAATAGTCCAA+TGG | + | chr4_4:47235553-47235572 | Msa0684060:CDS | 30.0% | |
| TGTAACCAAAGTCATAGTTA+GGG | - | chr4_4:47235607-47235626 | None:intergenic | 30.0% | |
| CATGATATCAATCAAGATCA+CGG | + | chr4_4:47235764-47235783 | Msa0684060:CDS | 30.0% | |
| AATCAAGATCACGGTTATAA+TGG | + | chr4_4:47235773-47235792 | Msa0684060:CDS | 30.0% | |
| ATCAAGATCACGGTTATAAT+GGG | + | chr4_4:47235774-47235793 | Msa0684060:CDS | 30.0% | |
| TTTAATAATTCTGCAGGACA+AGG | + | chr4_4:47235818-47235837 | Msa0684060:CDS | 30.0% | |
| TTGGAGAATTTGTATAAGCA+AGG | + | chr4_4:47234326-47234345 | Msa0684060:CDS | 30.0% | |
| AAATACAAGAAATCACTGCT+AGG | + | chr4_4:47234372-47234391 | Msa0684060:CDS | 30.0% | |
| ! | AAGGAAAGAATGTCTTTTAC+TGG | + | chr4_4:47234417-47234436 | Msa0684060:CDS | 30.0% |
| CAAATAGGTGAAGGATAAAT+GGG | - | chr4_4:47234527-47234546 | None:intergenic | 30.0% | |
| ACAAATAGGTGAAGGATAAA+TGG | - | chr4_4:47234528-47234547 | None:intergenic | 30.0% | |
| AACATACCATTTGGACAAAT+AGG | - | chr4_4:47234542-47234561 | None:intergenic | 30.0% | |
| !!! | TTCTTCCTTTTTCTAGTTCT+AGG | + | chr4_4:47234568-47234587 | Msa0684060:intron | 30.0% |
| ! | AACCTAATGAGTACTACTTT+TGG | - | chr4_4:47234678-47234697 | None:intergenic | 30.0% |
| CCATATTTAAATTGTGCTAG+CGG | + | chr4_4:47234703-47234722 | Msa0684060:intron | 30.0% | |
| TTCTGCAAACATCTATATTG+TGG | + | chr4_4:47234858-47234877 | Msa0684060:intron | 30.0% | |
| ! | AAAACAAGGTGCATTTTCAA+CGG | - | chr4_4:47234910-47234929 | None:intergenic | 30.0% |
| CTAAAACGGGATTTATATAG+AGG | - | chr4_4:47234988-47235007 | None:intergenic | 30.0% | |
| ! | CTCTATATAAATCCCGTTTT+AGG | + | chr4_4:47234986-47235005 | Msa0684060:intron | 30.0% |
| AGGTTAATTTCTCCTAAAAC+GGG | - | chr4_4:47235001-47235020 | None:intergenic | 30.0% | |
| TTTCTTCATGCAAATGTGTT+TGG | + | chr4_4:47235171-47235190 | Msa0684060:intron | 30.0% | |
| AACAGAAACATAACCAAAGA+TGG | + | chr4_4:47235266-47235285 | Msa0684060:intron | 30.0% | |
| TAGCTTATTTCATGACTTTG+TGG | - | chr4_4:47235449-47235468 | None:intergenic | 30.0% | |
| AAATATCTGCAATAGTCCAA+TGG | + | chr4_4:47235553-47235572 | Msa0684060:CDS | 30.0% | |
| TGTAACCAAAGTCATAGTTA+GGG | - | chr4_4:47235607-47235626 | None:intergenic | 30.0% | |
| CATGATATCAATCAAGATCA+CGG | + | chr4_4:47235764-47235783 | Msa0684060:CDS | 30.0% | |
| AATCAAGATCACGGTTATAA+TGG | + | chr4_4:47235773-47235792 | Msa0684060:CDS | 30.0% | |
| ATCAAGATCACGGTTATAAT+GGG | + | chr4_4:47235774-47235793 | Msa0684060:CDS | 30.0% | |
| TTTAATAATTCTGCAGGACA+AGG | + | chr4_4:47235818-47235837 | Msa0684060:CDS | 30.0% | |
| ATTAATGAGGAGGGTTCAAA+TGG | + | chr4_4:47234245-47234264 | Msa0684060:CDS | 35.0% | |
| TTAATGAGGAGGGTTCAAAT+GGG | + | chr4_4:47234246-47234265 | Msa0684060:CDS | 35.0% | |
| GTATTTCATCAAGTTCACGA+TGG | + | chr4_4:47234276-47234295 | Msa0684060:CDS | 35.0% | |
| TCTTGTATTTCTTCAGCACT+TGG | - | chr4_4:47234362-47234381 | None:intergenic | 35.0% | |
| GAAGTTGAGAACATACCATT+TGG | - | chr4_4:47234551-47234570 | None:intergenic | 35.0% | |
| TGCCAAAAGTAGTACTCATT+AGG | + | chr4_4:47234673-47234692 | Msa0684060:intron | 35.0% | |
| CCGCTAGCACAATTTAAATA+TGG | - | chr4_4:47234706-47234725 | None:intergenic | 35.0% | |
| CTAGTATTCTACTGTAACGT+TGG | + | chr4_4:47235366-47235385 | Msa0684060:intron | 35.0% | |
| ATTTCATGACTTTGTGGTTG+TGG | - | chr4_4:47235443-47235462 | None:intergenic | 35.0% | |
| !! | GAAGCACTTTTGGATTTTGA+GGG | - | chr4_4:47235475-47235494 | None:intergenic | 35.0% |
| !!! | AGAAGCACTTTTGGATTTTG+AGG | - | chr4_4:47235476-47235495 | None:intergenic | 35.0% |
| TTGACATAACTTTCTCAGCA+TGG | - | chr4_4:47235523-47235542 | None:intergenic | 35.0% | |
| GCTGAGAAAGTTATGTCAAA+TGG | + | chr4_4:47235524-47235543 | Msa0684060:CDS | 35.0% | |
| AGAATCCCTAACTATGACTT+TGG | + | chr4_4:47235599-47235618 | Msa0684060:CDS | 35.0% | |
| CTGTAACCAAAGTCATAGTT+AGG | - | chr4_4:47235608-47235627 | None:intergenic | 35.0% | |
| ATTAATGAGGAGGGTTCAAA+TGG | + | chr4_4:47234245-47234264 | Msa0684060:CDS | 35.0% | |
| TTAATGAGGAGGGTTCAAAT+GGG | + | chr4_4:47234246-47234265 | Msa0684060:CDS | 35.0% | |
| GTATTTCATCAAGTTCACGA+TGG | + | chr4_4:47234276-47234295 | Msa0684060:CDS | 35.0% | |
| TCTTGTATTTCTTCAGCACT+TGG | - | chr4_4:47234362-47234381 | None:intergenic | 35.0% | |
| GAAGTTGAGAACATACCATT+TGG | - | chr4_4:47234551-47234570 | None:intergenic | 35.0% | |
| TGCCAAAAGTAGTACTCATT+AGG | + | chr4_4:47234673-47234692 | Msa0684060:intron | 35.0% | |
| CCGCTAGCACAATTTAAATA+TGG | - | chr4_4:47234706-47234725 | None:intergenic | 35.0% | |
| CTAGTATTCTACTGTAACGT+TGG | + | chr4_4:47235366-47235385 | Msa0684060:intron | 35.0% | |
| ATTTCATGACTTTGTGGTTG+TGG | - | chr4_4:47235443-47235462 | None:intergenic | 35.0% | |
| !! | GAAGCACTTTTGGATTTTGA+GGG | - | chr4_4:47235475-47235494 | None:intergenic | 35.0% |
| !!! | AGAAGCACTTTTGGATTTTG+AGG | - | chr4_4:47235476-47235495 | None:intergenic | 35.0% |
| TTGACATAACTTTCTCAGCA+TGG | - | chr4_4:47235523-47235542 | None:intergenic | 35.0% | |
| GCTGAGAAAGTTATGTCAAA+TGG | + | chr4_4:47235524-47235543 | Msa0684060:CDS | 35.0% | |
| AGAATCCCTAACTATGACTT+TGG | + | chr4_4:47235599-47235618 | Msa0684060:CDS | 35.0% | |
| CTGTAACCAAAGTCATAGTT+AGG | - | chr4_4:47235608-47235627 | None:intergenic | 35.0% | |
| CCATTTGGACAAATAGGTGA+AGG | - | chr4_4:47234536-47234555 | None:intergenic | 40.0% | |
| CCTTCACCTATTTGTCCAAA+TGG | + | chr4_4:47234533-47234552 | Msa0684060:CDS | 40.0% | |
| !!! | TACCTGCAGTAGGTTTTAGA+AGG | + | chr4_4:47235495-47235514 | Msa0684060:CDS | 40.0% |
| !! | TTCCTTCTAAAACCTACTGC+AGG | - | chr4_4:47235500-47235519 | None:intergenic | 40.0% |
| ATCCAACTGGCATATTGGAA+GGG | + | chr4_4:47235660-47235679 | Msa0684060:CDS | 40.0% | |
| CTGAAACAATAGAAGACACC+TGG | - | chr4_4:47235697-47235716 | None:intergenic | 40.0% | |
| AGTTCCACTGATACACATTC+TGG | + | chr4_4:47235728-47235747 | Msa0684060:CDS | 40.0% | |
| AGAACCAGAATGTGTATCAG+TGG | - | chr4_4:47235735-47235754 | None:intergenic | 40.0% | |
| CCATTTGGACAAATAGGTGA+AGG | - | chr4_4:47234536-47234555 | None:intergenic | 40.0% | |
| CCTTCACCTATTTGTCCAAA+TGG | + | chr4_4:47234533-47234552 | Msa0684060:CDS | 40.0% | |
| !!! | TACCTGCAGTAGGTTTTAGA+AGG | + | chr4_4:47235495-47235514 | Msa0684060:CDS | 40.0% |
| !! | TTCCTTCTAAAACCTACTGC+AGG | - | chr4_4:47235500-47235519 | None:intergenic | 40.0% |
| ATCCAACTGGCATATTGGAA+GGG | + | chr4_4:47235660-47235679 | Msa0684060:CDS | 40.0% | |
| CTGAAACAATAGAAGACACC+TGG | - | chr4_4:47235697-47235716 | None:intergenic | 40.0% | |
| AGTTCCACTGATACACATTC+TGG | + | chr4_4:47235728-47235747 | Msa0684060:CDS | 40.0% | |
| AGAACCAGAATGTGTATCAG+TGG | - | chr4_4:47235735-47235754 | None:intergenic | 40.0% | |
| ACTGCTAGGCTTAGAGTGTA+TGG | + | chr4_4:47234386-47234405 | Msa0684060:CDS | 45.0% | |
| AGAGTGTATGGTCACATCGA+AGG | + | chr4_4:47234398-47234417 | Msa0684060:CDS | 45.0% | |
| !! | GGTGAAGGATAAATGGGTTG+AGG | - | chr4_4:47234521-47234540 | None:intergenic | 45.0% |
| !! | AAATTGTGCTAGCGGACTTG+TGG | + | chr4_4:47234711-47234730 | Msa0684060:intron | 45.0% |
| TGTGGTTGTGGTACGCAATA+TGG | - | chr4_4:47235431-47235450 | None:intergenic | 45.0% | |
| !!! | ACTGCAGGTAGAAGCACTTT+TGG | - | chr4_4:47235485-47235504 | None:intergenic | 45.0% |
| ! | AAAGTGCTTCTACCTGCAGT+AGG | + | chr4_4:47235485-47235504 | Msa0684060:CDS | 45.0% |
| TTGTTTCCACTGCATCCAAC+TGG | + | chr4_4:47235647-47235666 | Msa0684060:CDS | 45.0% | |
| AATATGCCAGTTGGATGCAG+TGG | - | chr4_4:47235656-47235675 | None:intergenic | 45.0% | |
| ACTGCATCCAACTGGCATAT+TGG | + | chr4_4:47235655-47235674 | Msa0684060:CDS | 45.0% | |
| CATCCAACTGGCATATTGGA+AGG | + | chr4_4:47235659-47235678 | Msa0684060:CDS | 45.0% | |
| TTCCCTTCCAATATGCCAGT+TGG | - | chr4_4:47235665-47235684 | None:intergenic | 45.0% | |
| ACTGCTAGGCTTAGAGTGTA+TGG | + | chr4_4:47234386-47234405 | Msa0684060:CDS | 45.0% | |
| AGAGTGTATGGTCACATCGA+AGG | + | chr4_4:47234398-47234417 | Msa0684060:CDS | 45.0% | |
| !! | GGTGAAGGATAAATGGGTTG+AGG | - | chr4_4:47234521-47234540 | None:intergenic | 45.0% |
| !! | AAATTGTGCTAGCGGACTTG+TGG | + | chr4_4:47234711-47234730 | Msa0684060:intron | 45.0% |
| TGTGGTTGTGGTACGCAATA+TGG | - | chr4_4:47235431-47235450 | None:intergenic | 45.0% | |
| !!! | ACTGCAGGTAGAAGCACTTT+TGG | - | chr4_4:47235485-47235504 | None:intergenic | 45.0% |
| ! | AAAGTGCTTCTACCTGCAGT+AGG | + | chr4_4:47235485-47235504 | Msa0684060:CDS | 45.0% |
| TTGTTTCCACTGCATCCAAC+TGG | + | chr4_4:47235647-47235666 | Msa0684060:CDS | 45.0% | |
| AATATGCCAGTTGGATGCAG+TGG | - | chr4_4:47235656-47235675 | None:intergenic | 45.0% | |
| ACTGCATCCAACTGGCATAT+TGG | + | chr4_4:47235655-47235674 | Msa0684060:CDS | 45.0% | |
| CATCCAACTGGCATATTGGA+AGG | + | chr4_4:47235659-47235678 | Msa0684060:CDS | 45.0% | |
| TTCCCTTCCAATATGCCAGT+TGG | - | chr4_4:47235665-47235684 | None:intergenic | 45.0% | |
| GGAAGGGAAAACAACTGACC+AGG | + | chr4_4:47235676-47235695 | Msa0684060:CDS | 50.0% | |
| GGAAGGGAAAACAACTGACC+AGG | + | chr4_4:47235676-47235695 | Msa0684060:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 47234221 | 47235847 | 47234221 | ID=Msa0684060;Name=Msa0684060 |
| chr4_4 | mRNA | 47234221 | 47235847 | 47234221 | ID=Msa0684060-mRNA-1;Parent=Msa0684060;Name=Msa0684060-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|254 |
| chr4_4 | exon | 47234221 | 47234554 | 47234221 | ID=Msa0684060-mRNA-1:exon:11640;Parent=Msa0684060-mRNA-1 |
| chr4_4 | exon | 47235417 | 47235847 | 47235417 | ID=Msa0684060-mRNA-1:exon:11641;Parent=Msa0684060-mRNA-1 |
| chr4_4 | CDS | 47234221 | 47234554 | 47234221 | ID=Msa0684060-mRNA-1:cds;Parent=Msa0684060-mRNA-1 |
| chr4_4 | CDS | 47235417 | 47235847 | 47235417 | ID=Msa0684060-mRNA-1:cds;Parent=Msa0684060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
