AlfalfaGEDB | Msa0684550

M. sativa cultivar zhongmu-4 / Msa0684550

KEGG: -
GO: -
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0684550	KEH27947.1	61.798	178	49	5	31	190	17	193	5.51e-58	194

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0684550	sp\|Q8LPH6\|MYB86_ARATH	77.215	79	18	0	1	79	1	79	3.58e-37	135

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0684550	A0A072UE81	61.798	178	49	5	31	190	17	193	2.63e-58	194

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TFs/TRs:

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Gene ID	Type	Classification
Msa0684550	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0684550	MtrunA17_Chr3g0117091	90.000	80	8	0	1	80	1	80	5.65e-48	160
Msa0684550	MtrunA17_Chr1g0211161	87.179	78	10	0	3	80	4	81	2.97e-45	150
Msa0684550	MtrunA17_Chr4g0058631	82.278	79	14	0	1	79	1	79	8.58e-42	144
Msa0684550	MtrunA17_Chr5g0421601	72.000	100	21	1	64	156	17	116	1.76e-41	139
Msa0684550	MtrunA17_Chr4g0067291	86.301	73	10	0	84	156	286	358	6.05e-41	142
Msa0684550	MtrunA17_Chr1g0193371	78.481	79	17	0	1	79	1	79	1.54e-38	136
Msa0684550	MtrunA17_Chr7g0271241	78.481	79	17	0	1	79	1	79	2.36e-38	135
Msa0684550	MtrunA17_Chr7g0270891	74.684	79	20	0	1	79	1	79	8.87e-37	131
Msa0684550	MtrunA17_Chr8g0342511	72.152	79	22	0	1	79	1	79	5.84e-36	122
Msa0684550	MtrunA17_Chr1g0193801	74.684	79	20	0	1	79	1	79	6.08e-36	129

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0684550	AT5G26660.1	77.215	79	18	0	1	79	1	79	3.63e-38	135
Msa0684550	AT1G57560.2	75.949	79	19	0	1	79	1	79	1.14e-36	129
Msa0684550	AT1G57560.1	75.949	79	19	0	1	79	1	79	1.25e-36	130
Msa0684550	AT4G01680.3	74.684	79	20	0	1	79	1	79	1.37e-36	128
Msa0684550	AT4G01680.1	74.684	79	20	0	1	79	1	79	5.40e-36	129
Msa0684550	AT1G09540.1	75.949	79	19	0	1	79	1	79	9.44e-36	129
Msa0684550	AT3G13890.2	70.886	79	23	0	1	79	1	79	5.63e-34	124
Msa0684550	AT4G01680.2	64.835	91	20	1	1	79	1	91	1.91e-32	120
Msa0684550	AT3G13890.1	63.636	88	23	1	1	79	1	88	6.33e-31	116
Msa0684550	AT1G63910.1	63.291	79	29	0	1	79	1	79	1.29e-30	115

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Find 43 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAATGGCCATCTGCAAGA+AGG	0.547869	4_4:-47927684	None:intergenic
AACATTCCTCTCTTCAAATC+AGG	0.399385	4_4:-47925527	None:intergenic
AAGAACTCAAAGGGAATCAA+AGG	0.577254	4_4:-47927012	None:intergenic
AATGACGGAACATAATAAGA+AGG	0.575415	4_4:-47926937	None:intergenic
AGAAACATGTTATCCTCCTT+TGG	0.416553	4_4:+47926864	Msa0684550:CDS
AGGAATGTTCTCAAAACAAG+AGG	0.619853	4_4:+47925541	Msa0684550:CDS
AGGACAATCCATTGTTCCCA+TGG	0.561451	4_4:-47926917	None:intergenic
ATCAAAGCCTGCACACATGT+AGG	0.562123	4_4:-47926962	None:intergenic
ATTATGTCCCATGGGAACAA+TGG	0.554058	4_4:+47926909	Msa0684550:CDS
ATTGCAGGGTTGCAAAGGTG+TGG	0.661088	4_4:+47925467	Msa0684550:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCTCTTATAAAGGAAGAGA+AGG	+	chr4_4:47925773-47925792	Msa0684550:intron	30.0%
AATATGAGAATGAGTCTTAG+AGG	+	chr4_4:47925951-47925970	Msa0684550:intron	30.0%
ATATGAGAATGAGTCTTAGA+GGG	+	chr4_4:47925952-47925971	Msa0684550:intron	30.0%
AATGCAAAAAACAAAGTGGT+TGG	+	chr4_4:47926114-47926133	Msa0684550:intron	30.0%
GTGTAGATTGAAACTGATAA+GGG	-	chr4_4:47926993-47927012	None:intergenic	30.0%
TACCTTGAACATTATTACAG+TGG	-	chr4_4:47927492-47927511	None:intergenic	30.0%
AAATTGCAAAAACTTGTAGG+CGG	-	chr4_4:47927515-47927534	None:intergenic	30.0%
ACATTTCAAATTATGCTTGC+AGG	+	chr4_4:47927586-47927605	Msa0684550:intron	30.0%
AACATTCCTCTCTTCAAATC+AGG	-	chr4_4:47925530-47925549	None:intergenic	35.0%
AGGAATGTTCTCAAAACAAG+AGG	+	chr4_4:47925541-47925560	Msa0684550:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	47925207	47927716	47925207	ID=Msa0684550;Name=Msa0684550
chr4_4	mRNA	47925207	47927716	47925207	ID=Msa0684550-mRNA-1;Parent=Msa0684550;Name=Msa0684550-mRNA-1;_AED=0.46;_eAED=0.49;_QI=0\|0\|0\|1\|0.5\|0.6\|5\|0\|206
chr4_4	exon	47925207	47925339	47925207	ID=Msa0684550-mRNA-1:exon:11859;Parent=Msa0684550-mRNA-1
chr4_4	exon	47925474	47925562	47925474	ID=Msa0684550-mRNA-1:exon:11860;Parent=Msa0684550-mRNA-1
chr4_4	exon	47926823	47927070	47926823	ID=Msa0684550-mRNA-1:exon:11861;Parent=Msa0684550-mRNA-1
chr4_4	exon	47927415	47927521	47927415	ID=Msa0684550-mRNA-1:exon:11862;Parent=Msa0684550-mRNA-1
chr4_4	exon	47927673	47927716	47927673	ID=Msa0684550-mRNA-1:exon:11863;Parent=Msa0684550-mRNA-1
chr4_4	CDS	47925207	47925339	47925207	ID=Msa0684550-mRNA-1:cds;Parent=Msa0684550-mRNA-1
chr4_4	CDS	47925474	47925562	47925474	ID=Msa0684550-mRNA-1:cds;Parent=Msa0684550-mRNA-1
chr4_4	CDS	47926823	47927070	47926823	ID=Msa0684550-mRNA-1:cds;Parent=Msa0684550-mRNA-1
chr4_4	CDS	47927415	47927521	47927415	ID=Msa0684550-mRNA-1:cds;Parent=Msa0684550-mRNA-1
chr4_4	CDS	47927673	47927716	47927673	ID=Msa0684550-mRNA-1:cds;Parent=Msa0684550-mRNA-1

Gene Sequence

>Msa0684550

ATGGGTCGCCATTTCTGTTCTTTAAAGCAAAAACTAAGAAAAGGTTTATGGTCCCCTGAAAAAGATGAGAAGCTTTTCAATTACATAACGATGTTTGGTGTTGGATGTTGTTGTTCAGTTCCTAAACTAGCTGGGTTGCAAAGGTGTGGAAAGAGTTGTATATTAAGATGGATAAACTATTTGAGGCCTGATTTGAAGAGAGGAATGTTCTCAAAACAAGAGCGTGAATATATTGTTAATTATGGATTGTACATGTTGTATGCAGAAACATGTTATCCTCCTTTGGTACAATATGTAACTTACAACAGATTATGTCCCATGGGAACAATGGATTGTCCTTCTTATTATGTTCCGTCATTACCCTACATGTGTGCAGGCTTTGATCGTGACCCTTATCAGTTTCAATCTACACCTTTGATTCCCTTTGAGTTCTTCGGTGATGAAAATGGAAACGGGCGTTCTGTTATTAAGCGCTTGACACCTTCAAATACCGCAATCTTGTCTCCTATATACTATGTCATTTTTACAACACTTGCAATATTGGCCACTGTAATAATGTTCAAGGTACCGCCTACAAATGGCGGCTTGCCTTCTTGCAGATGGCCATTGTTTTGGCCTTGA

Protein sequence

>Msa0684550

MGRHFCSLKQKLRKGLWSPEKDEKLFNYITMFGVGCCCSVPKLAGLQRCGKSCILRWINYLRPDLKRGMFSKQEREYIVNYGLYMLYAETCYPPLVQYVTYNRLCPMGTMDCPSYYVPSLPYMCAGFDRDPYQFQSTPLIPFEFFGDENGNGRSVIKRLTPSNTAILSPIYYVIFTTLAILATVIMFKVPPTNGGLPSCRWPLFWP*