Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685570 | XP_003606840.1 | 84.727 | 275 | 38 | 2 | 1 | 273 | 1 | 273 | 8.87e-149 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685570 | sp|Q1PES7|Y3622_ARATH | 29.565 | 115 | 77 | 2 | 9 | 123 | 8 | 118 | 7.20e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685570 | G7JEX9 | 84.727 | 275 | 38 | 2 | 1 | 273 | 1 | 273 | 4.24e-149 | 427 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0685570 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685570 | MtrunA17_Chr4g0033941 | 84.483 | 232 | 32 | 2 | 44 | 273 | 1 | 230 | 2.70e-121 | 345 |
| Msa0685570 | MtrunA17_Chr4g0033951 | 60.488 | 205 | 61 | 9 | 1 | 202 | 1 | 188 | 1.29e-67 | 208 |
| Msa0685570 | MtrunA17_Chr1g0154041 | 32.673 | 101 | 66 | 1 | 8 | 108 | 13 | 111 | 5.67e-15 | 74.7 |
| Msa0685570 | MtrunA17_Chr1g0154161 | 32.540 | 126 | 78 | 3 | 23 | 143 | 43 | 166 | 4.62e-13 | 68.2 |
| Msa0685570 | MtrunA17_Chr1g0154211 | 33.981 | 103 | 65 | 2 | 23 | 124 | 35 | 135 | 7.87e-12 | 64.7 |
| Msa0685570 | MtrunA17_Chr5g0419201 | 31.068 | 103 | 69 | 1 | 5 | 107 | 11 | 111 | 3.15e-11 | 61.2 |
| Msa0685570 | MtrunA17_Chr7g0233571 | 35.714 | 98 | 60 | 3 | 11 | 107 | 10 | 105 | 5.85e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685570 | AT3G06220.1 | 29.565 | 115 | 77 | 2 | 9 | 123 | 8 | 118 | 7.32e-13 | 65.9 |
Find 42 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCTTGGCCGCGATTAT+TGG | 0.150855 | 4_4:-49700429 | None:intergenic |
| TTCTTTGATGATTGCGAAAA+AGG | 0.192611 | 4_4:-49699497 | None:intergenic |
| AGTGATGCTTGAAGAGTTAT+TGG | 0.212786 | 4_4:+49700278 | Msa0685570:CDS |
| ATTATTCTGGTAGGCTCTTC+TGG | 0.236095 | 4_4:+49700171 | Msa0685570:CDS |
| ACAAGAGATTGTTATGGATT+TGG | 0.243204 | 4_4:+49700122 | Msa0685570:CDS |
| CATCAATGTTGCTGCAGCTT+TGG | 0.244862 | 4_4:-49700685 | None:intergenic |
| AATGACATTTATCTGCAAAT+TGG | 0.269252 | 4_4:+49700228 | Msa0685570:CDS |
| TGCAGCAACAATCATGTCTA+TGG | 0.269290 | 4_4:+49700608 | Msa0685570:CDS |
| CAAGAGATTGTTATGGATTT+GGG | 0.277836 | 4_4:+49700123 | Msa0685570:CDS |
| GAAGAATGCATTAATTATTC+TGG | 0.319956 | 4_4:+49700158 | Msa0685570:CDS |
| CAAAGCTGCAGCAACATTGA+TGG | 0.380913 | 4_4:+49700686 | Msa0685570:CDS |
| TAATGGGGAGAACAAGTTCC+AGG | 0.400809 | 4_4:+49700311 | Msa0685570:CDS |
| CTGGTGAGAGAGTATGCTTC+AGG | 0.408630 | 4_4:+49700571 | Msa0685570:CDS |
| TTCTTAAAGCACTCACTCTC+AGG | 0.419431 | 4_4:-49700480 | None:intergenic |
| TAGGCTCTTCTGGTGAGAAA+TGG | 0.425803 | 4_4:+49700181 | Msa0685570:CDS |
| TGGTCTACCCCTCTTTCTCT+TGG | 0.432293 | 4_4:-49700442 | None:intergenic |
| GAGAAAATCCTGCTGGTGAG+AGG | 0.446423 | 4_4:+49700733 | Msa0685570:CDS |
| AGTACCACAAGAGATTGTTA+TGG | 0.452327 | 4_4:+49700116 | Msa0685570:CDS |
| CAGTTAACTAAAATAACAAC+TGG | 0.461802 | 4_4:-49700840 | None:intergenic |
| AGGCTCTTCTGGTGAGAAAT+GGG | 0.468490 | 4_4:+49700182 | Msa0685570:CDS |
| ACATTTATCTGCAAATTGGT+TGG | 0.488288 | 4_4:+49700232 | Msa0685570:CDS |
| TGGATTTGGGTGAAGAGTTG+TGG | 0.489164 | 4_4:+49700136 | Msa0685570:CDS |
| ATTGTGGTTAAGAGAAATGA+TGG | 0.499727 | 4_4:+49700528 | Msa0685570:CDS |
| TCTTGTACATTCTTGAAGCA+TGG | 0.500756 | 4_4:-49700366 | None:intergenic |
| ATGCATACCCTCTCACCAGC+AGG | 0.531521 | 4_4:-49700741 | None:intergenic |
| TAATCGCGGCCAAGAGAAAG+AGG | 0.543608 | 4_4:+49700433 | Msa0685570:CDS |
| ACTAAAATAACAACTGGAGC+AGG | 0.545360 | 4_4:-49700834 | None:intergenic |
| AATCGTGGCTGAGAGAAAGA+AGG | 0.556974 | 4_4:+49700794 | Msa0685570:CDS |
| AGGCTTGAACATCAACCGCC+TGG | 0.566829 | 4_4:+49699519 | Msa0685570:CDS |
| AATGCATTAATTATTCTGGT+AGG | 0.572311 | 4_4:+49700162 | Msa0685570:CDS |
| AAGCATACTCTCTCACCAGC+AGG | 0.573273 | 4_4:-49700567 | None:intergenic |
| TGCAGCAGCTCCAATAATCG+CGG | 0.576668 | 4_4:+49700419 | Msa0685570:CDS |
| GCAGCAACAATCATGTCTAT+GGG | 0.585892 | 4_4:+49700609 | Msa0685570:CDS |
| AGAAAATCCTGCTGGTGAGA+GGG | 0.595818 | 4_4:+49700734 | Msa0685570:CDS |
| ATTGATGGCTGCGATAAACA+AGG | 0.598401 | 4_4:+49700701 | Msa0685570:CDS |
| AGAACAAGAGAAAATCCTGC+TGG | 0.600152 | 4_4:+49700726 | Msa0685570:CDS |
| AATCGCGGCCAAGAGAAAGA+GGG | 0.619676 | 4_4:+49700434 | Msa0685570:CDS |
| ATCGTGGCTGAGAGAAAGAA+GGG | 0.634544 | 4_4:+49700795 | Msa0685570:CDS |
| AAATCCATAACAATCTCTTG+TGG | 0.653407 | 4_4:-49700120 | None:intergenic |
| ATCGCGGCCAAGAGAAAGAG+GGG | 0.679157 | 4_4:+49700435 | Msa0685570:CDS |
| AAAATCTGCAGAAACAATCG+TGG | 0.680787 | 4_4:+49700779 | Msa0685570:CDS |
| TTGATGGCTGCGATAAACAA+GGG | 0.688503 | 4_4:+49700702 | Msa0685570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAAGAAATACTTTGTT+TGG | + | chr4_4:49699625-49699644 | Msa0685570:intron | 15.0% |
| !! | ATAATAAGAAATACTTTGTT+TGG | + | chr4_4:49699625-49699644 | Msa0685570:intron | 15.0% |
| !!! | TTTTAGTTATACATAGACAT+AGG | + | chr4_4:49699832-49699851 | Msa0685570:intron | 20.0% |
| !!! | TTATTGGTTTTCACATATAA+TGG | + | chr4_4:49700294-49700313 | Msa0685570:CDS | 20.0% |
| !!! | TATTGGTTTTCACATATAAT+GGG | + | chr4_4:49700295-49700314 | Msa0685570:CDS | 20.0% |
| !!! | TTTTAGTTATACATAGACAT+AGG | + | chr4_4:49699832-49699851 | Msa0685570:intron | 20.0% |
| !!! | TTATTGGTTTTCACATATAA+TGG | + | chr4_4:49700294-49700313 | Msa0685570:CDS | 20.0% |
| !!! | TATTGGTTTTCACATATAAT+GGG | + | chr4_4:49700295-49700314 | Msa0685570:CDS | 20.0% |
| ! | AGTACGAATAAATTATTACC+AGG | - | chr4_4:49699540-49699559 | None:intergenic | 25.0% |
| ! | GATGATGACAACTAAATTAT+AGG | + | chr4_4:49699653-49699672 | Msa0685570:intron | 25.0% |
| !!! | GGAAAAGTGAGTTTTTTTAA+AGG | + | chr4_4:49699674-49699693 | Msa0685570:intron | 25.0% |
| ! | TTATCTACTAGAGACAAATT+GGG | + | chr4_4:49699793-49699812 | Msa0685570:intron | 25.0% |
| ! | TTAGACTATTTGATATCGAT+TGG | + | chr4_4:49699962-49699981 | Msa0685570:intron | 25.0% |
| ! | GAAGAATGCATTAATTATTC+TGG | + | chr4_4:49700158-49700177 | Msa0685570:CDS | 25.0% |
| ! | AATGCATTAATTATTCTGGT+AGG | + | chr4_4:49700162-49700181 | Msa0685570:CDS | 25.0% |
| ! | AATGACATTTATCTGCAAAT+TGG | + | chr4_4:49700228-49700247 | Msa0685570:CDS | 25.0% |
| !!! | ATTGGTTTTCACATATAATG+GGG | + | chr4_4:49700296-49700315 | Msa0685570:CDS | 25.0% |
| !!! | AATTTTTGGTAAGAATGGAT+TGG | + | chr4_4:49700338-49700357 | Msa0685570:CDS | 25.0% |
| ! | CAGTTAACTAAAATAACAAC+TGG | - | chr4_4:49700843-49700862 | None:intergenic | 25.0% |
| ! | AGTACGAATAAATTATTACC+AGG | - | chr4_4:49699540-49699559 | None:intergenic | 25.0% |
| ! | GATGATGACAACTAAATTAT+AGG | + | chr4_4:49699653-49699672 | Msa0685570:intron | 25.0% |
| !!! | GGAAAAGTGAGTTTTTTTAA+AGG | + | chr4_4:49699674-49699693 | Msa0685570:intron | 25.0% |
| ! | TTATCTACTAGAGACAAATT+GGG | + | chr4_4:49699793-49699812 | Msa0685570:intron | 25.0% |
| ! | TTAGACTATTTGATATCGAT+TGG | + | chr4_4:49699962-49699981 | Msa0685570:intron | 25.0% |
| ! | GAAGAATGCATTAATTATTC+TGG | + | chr4_4:49700158-49700177 | Msa0685570:CDS | 25.0% |
| ! | AATGCATTAATTATTCTGGT+AGG | + | chr4_4:49700162-49700181 | Msa0685570:CDS | 25.0% |
| ! | AATGACATTTATCTGCAAAT+TGG | + | chr4_4:49700228-49700247 | Msa0685570:CDS | 25.0% |
| !!! | ATTGGTTTTCACATATAATG+GGG | + | chr4_4:49700296-49700315 | Msa0685570:CDS | 25.0% |
| !!! | AATTTTTGGTAAGAATGGAT+TGG | + | chr4_4:49700338-49700357 | Msa0685570:CDS | 25.0% |
| ! | CAGTTAACTAAAATAACAAC+TGG | - | chr4_4:49700843-49700862 | None:intergenic | 25.0% |
| ! | TTCTTTGATGATTGCGAAAA+AGG | - | chr4_4:49699500-49699519 | None:intergenic | 30.0% |
| ! | TTTTTCGCAATCATCAAAGA+AGG | + | chr4_4:49699499-49699518 | Msa0685570:CDS | 30.0% |
| ACGAATAAATTATTACCAGG+CGG | - | chr4_4:49699537-49699556 | None:intergenic | 30.0% | |
| TTTGTCTCTAGTAGATAACT+CGG | - | chr4_4:49699791-49699810 | None:intergenic | 30.0% | |
| GTTATCTACTAGAGACAAAT+TGG | + | chr4_4:49699792-49699811 | Msa0685570:intron | 30.0% | |
| AACAGAAAAATTACCAAGCT+TGG | - | chr4_4:49699943-49699962 | None:intergenic | 30.0% | |
| ! | ACTATTTGATATCGATTGGA+AGG | + | chr4_4:49699966-49699985 | Msa0685570:intron | 30.0% |
| !!! | GTCAAGCTACTATGTTTTTT+TGG | + | chr4_4:49700078-49700097 | Msa0685570:intron | 30.0% |
| AAATCCATAACAATCTCTTG+TGG | - | chr4_4:49700123-49700142 | None:intergenic | 30.0% | |
| ACAAGAGATTGTTATGGATT+TGG | + | chr4_4:49700122-49700141 | Msa0685570:CDS | 30.0% | |
| CAAGAGATTGTTATGGATTT+GGG | + | chr4_4:49700123-49700142 | Msa0685570:CDS | 30.0% | |
| !! | GAAGTGAGTATTTTGAAGAA+AGG | + | chr4_4:49700204-49700223 | Msa0685570:CDS | 30.0% |
| ACATTTATCTGCAAATTGGT+TGG | + | chr4_4:49700232-49700251 | Msa0685570:CDS | 30.0% | |
| !!! | GTGCAAATTTTTGGTAAGAA+TGG | + | chr4_4:49700333-49700352 | Msa0685570:CDS | 30.0% |
| TGAAGTTGCAGAAAAAATTG+TGG | + | chr4_4:49700512-49700531 | Msa0685570:CDS | 30.0% | |
| ATTGTGGTTAAGAGAAATGA+TGG | + | chr4_4:49700528-49700547 | Msa0685570:CDS | 30.0% | |
| !!! | TGACGAACATGATTTTTTCT+TGG | - | chr4_4:49700639-49700658 | None:intergenic | 30.0% |
| ! | TTCTTTGATGATTGCGAAAA+AGG | - | chr4_4:49699500-49699519 | None:intergenic | 30.0% |
| ! | TTTTTCGCAATCATCAAAGA+AGG | + | chr4_4:49699499-49699518 | Msa0685570:CDS | 30.0% |
| ACGAATAAATTATTACCAGG+CGG | - | chr4_4:49699537-49699556 | None:intergenic | 30.0% | |
| TTTGTCTCTAGTAGATAACT+CGG | - | chr4_4:49699791-49699810 | None:intergenic | 30.0% | |
| GTTATCTACTAGAGACAAAT+TGG | + | chr4_4:49699792-49699811 | Msa0685570:intron | 30.0% | |
| AACAGAAAAATTACCAAGCT+TGG | - | chr4_4:49699943-49699962 | None:intergenic | 30.0% | |
| ! | ACTATTTGATATCGATTGGA+AGG | + | chr4_4:49699966-49699985 | Msa0685570:intron | 30.0% |
| !!! | GTCAAGCTACTATGTTTTTT+TGG | + | chr4_4:49700078-49700097 | Msa0685570:intron | 30.0% |
| AAATCCATAACAATCTCTTG+TGG | - | chr4_4:49700123-49700142 | None:intergenic | 30.0% | |
| ACAAGAGATTGTTATGGATT+TGG | + | chr4_4:49700122-49700141 | Msa0685570:CDS | 30.0% | |
| CAAGAGATTGTTATGGATTT+GGG | + | chr4_4:49700123-49700142 | Msa0685570:CDS | 30.0% | |
| !! | GAAGTGAGTATTTTGAAGAA+AGG | + | chr4_4:49700204-49700223 | Msa0685570:CDS | 30.0% |
| ACATTTATCTGCAAATTGGT+TGG | + | chr4_4:49700232-49700251 | Msa0685570:CDS | 30.0% | |
| !!! | GTGCAAATTTTTGGTAAGAA+TGG | + | chr4_4:49700333-49700352 | Msa0685570:CDS | 30.0% |
| TGAAGTTGCAGAAAAAATTG+TGG | + | chr4_4:49700512-49700531 | Msa0685570:CDS | 30.0% | |
| ATTGTGGTTAAGAGAAATGA+TGG | + | chr4_4:49700528-49700547 | Msa0685570:CDS | 30.0% | |
| !!! | TGACGAACATGATTTTTTCT+TGG | - | chr4_4:49700639-49700658 | None:intergenic | 30.0% |
| ! | TTGATGATTGCGAAAAAGGA+TGG | - | chr4_4:49699496-49699515 | None:intergenic | 35.0% |
| AAAATTACCAAGCTTGGATC+TGG | - | chr4_4:49699937-49699956 | None:intergenic | 35.0% | |
| ! | TGATATCGATTGGAAGGTTA+CGG | + | chr4_4:49699972-49699991 | Msa0685570:intron | 35.0% |
| ACATGTTATGCATATGATGC+TGG | - | chr4_4:49700029-49700048 | None:intergenic | 35.0% | |
| AGTACCACAAGAGATTGTTA+TGG | + | chr4_4:49700116-49700135 | Msa0685570:CDS | 35.0% | |
| AGTGATGCTTGAAGAGTTAT+TGG | + | chr4_4:49700278-49700297 | Msa0685570:CDS | 35.0% | |
| ! | AAGTTCCAGGTGCAAATTTT+TGG | + | chr4_4:49700324-49700343 | Msa0685570:CDS | 35.0% |
| TCTTACCAAAAATTTGCACC+TGG | - | chr4_4:49700332-49700351 | None:intergenic | 35.0% | |
| TCTTGTACATTCTTGAAGCA+TGG | - | chr4_4:49700369-49700388 | None:intergenic | 35.0% | |
| ! | TCAGGAGAAAGAACTTTTCT+TGG | - | chr4_4:49700465-49700484 | None:intergenic | 35.0% |
| AAAATCTGCAGAAACAATCG+TGG | + | chr4_4:49700779-49700798 | Msa0685570:CDS | 35.0% | |
| ACTAAAATAACAACTGGAGC+AGG | - | chr4_4:49700837-49700856 | None:intergenic | 35.0% | |
| ! | TTGATGATTGCGAAAAAGGA+TGG | - | chr4_4:49699496-49699515 | None:intergenic | 35.0% |
| AAAATTACCAAGCTTGGATC+TGG | - | chr4_4:49699937-49699956 | None:intergenic | 35.0% | |
| ! | TGATATCGATTGGAAGGTTA+CGG | + | chr4_4:49699972-49699991 | Msa0685570:intron | 35.0% |
| ACATGTTATGCATATGATGC+TGG | - | chr4_4:49700029-49700048 | None:intergenic | 35.0% | |
| AGTACCACAAGAGATTGTTA+TGG | + | chr4_4:49700116-49700135 | Msa0685570:CDS | 35.0% | |
| AGTGATGCTTGAAGAGTTAT+TGG | + | chr4_4:49700278-49700297 | Msa0685570:CDS | 35.0% | |
| ! | AAGTTCCAGGTGCAAATTTT+TGG | + | chr4_4:49700324-49700343 | Msa0685570:CDS | 35.0% |
| TCTTACCAAAAATTTGCACC+TGG | - | chr4_4:49700332-49700351 | None:intergenic | 35.0% | |
| TCTTGTACATTCTTGAAGCA+TGG | - | chr4_4:49700369-49700388 | None:intergenic | 35.0% | |
| ! | TCAGGAGAAAGAACTTTTCT+TGG | - | chr4_4:49700465-49700484 | None:intergenic | 35.0% |
| AAAATCTGCAGAAACAATCG+TGG | + | chr4_4:49700779-49700798 | Msa0685570:CDS | 35.0% | |
| ACTAAAATAACAACTGGAGC+AGG | - | chr4_4:49700837-49700856 | None:intergenic | 35.0% | |
| ! | CGAAAAAGGATGGTTTGTCT+TGG | - | chr4_4:49699486-49699505 | None:intergenic | 40.0% |
| GCATGAGATGATGTTCATGT+GGG | - | chr4_4:49699580-49699599 | None:intergenic | 40.0% | |
| TGCATGAGATGATGTTCATG+TGG | - | chr4_4:49699581-49699600 | None:intergenic | 40.0% | |
| ! | ATAACTCGGCTTTTGAGCTA+AGG | - | chr4_4:49699777-49699796 | None:intergenic | 40.0% |
| ATGCACGCATTCATGAAGTT+TGG | + | chr4_4:49699880-49699899 | Msa0685570:intron | 40.0% | |
| ATTATTCTGGTAGGCTCTTC+TGG | + | chr4_4:49700171-49700190 | Msa0685570:CDS | 40.0% | |
| ! | TTCTTAAAGCACTCACTCTC+AGG | - | chr4_4:49700483-49700502 | None:intergenic | 40.0% |
| AGAACAAGAAAAAGTCCTGC+TGG | + | chr4_4:49700552-49700571 | Msa0685570:CDS | 40.0% | |
| TGCAGCAACAATCATGTCTA+TGG | + | chr4_4:49700608-49700627 | Msa0685570:CDS | 40.0% | |
| GCAGCAACAATCATGTCTAT+GGG | + | chr4_4:49700609-49700628 | Msa0685570:CDS | 40.0% | |
| ! | ATTGATGGCTGCGATAAACA+AGG | + | chr4_4:49700701-49700720 | Msa0685570:CDS | 40.0% |
| ! | TTGATGGCTGCGATAAACAA+GGG | + | chr4_4:49700702-49700721 | Msa0685570:CDS | 40.0% |
| AGAACAAGAGAAAATCCTGC+TGG | + | chr4_4:49700726-49700745 | Msa0685570:CDS | 40.0% | |
| ! | ACTGGAGCAGGATATTTTCT+TGG | - | chr4_4:49700825-49700844 | None:intergenic | 40.0% |
| ! | CGAAAAAGGATGGTTTGTCT+TGG | - | chr4_4:49699486-49699505 | None:intergenic | 40.0% |
| GCATGAGATGATGTTCATGT+GGG | - | chr4_4:49699580-49699599 | None:intergenic | 40.0% | |
| TGCATGAGATGATGTTCATG+TGG | - | chr4_4:49699581-49699600 | None:intergenic | 40.0% | |
| ! | ATAACTCGGCTTTTGAGCTA+AGG | - | chr4_4:49699777-49699796 | None:intergenic | 40.0% |
| ATGCACGCATTCATGAAGTT+TGG | + | chr4_4:49699880-49699899 | Msa0685570:intron | 40.0% | |
| ATTATTCTGGTAGGCTCTTC+TGG | + | chr4_4:49700171-49700190 | Msa0685570:CDS | 40.0% | |
| ! | TTCTTAAAGCACTCACTCTC+AGG | - | chr4_4:49700483-49700502 | None:intergenic | 40.0% |
| AGAACAAGAAAAAGTCCTGC+TGG | + | chr4_4:49700552-49700571 | Msa0685570:CDS | 40.0% | |
| TGCAGCAACAATCATGTCTA+TGG | + | chr4_4:49700608-49700627 | Msa0685570:CDS | 40.0% | |
| GCAGCAACAATCATGTCTAT+GGG | + | chr4_4:49700609-49700628 | Msa0685570:CDS | 40.0% | |
| ! | ATTGATGGCTGCGATAAACA+AGG | + | chr4_4:49700701-49700720 | Msa0685570:CDS | 40.0% |
| ! | TTGATGGCTGCGATAAACAA+GGG | + | chr4_4:49700702-49700721 | Msa0685570:CDS | 40.0% |
| AGAACAAGAGAAAATCCTGC+TGG | + | chr4_4:49700726-49700745 | Msa0685570:CDS | 40.0% | |
| ! | ACTGGAGCAGGATATTTTCT+TGG | - | chr4_4:49700825-49700844 | None:intergenic | 40.0% |
| ATAGGACCCTGTATTCCCTT+TGG | + | chr4_4:49699850-49699869 | Msa0685570:intron | 45.0% | |
| CAGTGACCAAAGGGAATACA+GGG | - | chr4_4:49699859-49699878 | None:intergenic | 45.0% | |
| TCAGTGACCAAAGGGAATAC+AGG | - | chr4_4:49699860-49699879 | None:intergenic | 45.0% | |
| ATCCATGACCGTCCGAAAAA+TGG | + | chr4_4:49699905-49699924 | Msa0685570:intron | 45.0% | |
| TCCATGACCGTCCGAAAAAT+GGG | + | chr4_4:49699906-49699925 | Msa0685570:intron | 45.0% | |
| !! | ATCTGGACCACCCCATTTTT+CGG | - | chr4_4:49699920-49699939 | None:intergenic | 45.0% |
| TGCAAGCATTCACAAAGCCA+GGG | - | chr4_4:49700001-49700020 | None:intergenic | 45.0% | |
| !! | TGGCTTTGTGAATGCTTGCA+GGG | + | chr4_4:49700001-49700020 | Msa0685570:intron | 45.0% |
| TGGATTTGGGTGAAGAGTTG+TGG | + | chr4_4:49700136-49700155 | Msa0685570:CDS | 45.0% | |
| TAGGCTCTTCTGGTGAGAAA+TGG | + | chr4_4:49700181-49700200 | Msa0685570:CDS | 45.0% | |
| AGGCTCTTCTGGTGAGAAAT+GGG | + | chr4_4:49700182-49700201 | Msa0685570:CDS | 45.0% | |
| TAATGGGGAGAACAAGTTCC+AGG | + | chr4_4:49700311-49700330 | Msa0685570:CDS | 45.0% | |
| TTTCTCTTGGCCGCGATTAT+TGG | - | chr4_4:49700432-49700451 | None:intergenic | 45.0% | |
| CATCAATGTTGCTGCAGCTT+TGG | - | chr4_4:49700688-49700707 | None:intergenic | 45.0% | |
| CAAAGCTGCAGCAACATTGA+TGG | + | chr4_4:49700686-49700705 | Msa0685570:CDS | 45.0% | |
| AGAAAATCCTGCTGGTGAGA+GGG | + | chr4_4:49700734-49700753 | Msa0685570:CDS | 45.0% | |
| AATCGTGGCTGAGAGAAAGA+AGG | + | chr4_4:49700794-49700813 | Msa0685570:CDS | 45.0% | |
| ATCGTGGCTGAGAGAAAGAA+GGG | + | chr4_4:49700795-49700814 | Msa0685570:CDS | 45.0% | |
| ATAGGACCCTGTATTCCCTT+TGG | + | chr4_4:49699850-49699869 | Msa0685570:intron | 45.0% | |
| CAGTGACCAAAGGGAATACA+GGG | - | chr4_4:49699859-49699878 | None:intergenic | 45.0% | |
| TCAGTGACCAAAGGGAATAC+AGG | - | chr4_4:49699860-49699879 | None:intergenic | 45.0% | |
| ATCCATGACCGTCCGAAAAA+TGG | + | chr4_4:49699905-49699924 | Msa0685570:intron | 45.0% | |
| TCCATGACCGTCCGAAAAAT+GGG | + | chr4_4:49699906-49699925 | Msa0685570:intron | 45.0% | |
| !! | ATCTGGACCACCCCATTTTT+CGG | - | chr4_4:49699920-49699939 | None:intergenic | 45.0% |
| TGCAAGCATTCACAAAGCCA+GGG | - | chr4_4:49700001-49700020 | None:intergenic | 45.0% | |
| !! | TGGCTTTGTGAATGCTTGCA+GGG | + | chr4_4:49700001-49700020 | Msa0685570:intron | 45.0% |
| TGGATTTGGGTGAAGAGTTG+TGG | + | chr4_4:49700136-49700155 | Msa0685570:CDS | 45.0% | |
| TAGGCTCTTCTGGTGAGAAA+TGG | + | chr4_4:49700181-49700200 | Msa0685570:CDS | 45.0% | |
| AGGCTCTTCTGGTGAGAAAT+GGG | + | chr4_4:49700182-49700201 | Msa0685570:CDS | 45.0% | |
| TAATGGGGAGAACAAGTTCC+AGG | + | chr4_4:49700311-49700330 | Msa0685570:CDS | 45.0% | |
| TTTCTCTTGGCCGCGATTAT+TGG | - | chr4_4:49700432-49700451 | None:intergenic | 45.0% | |
| CATCAATGTTGCTGCAGCTT+TGG | - | chr4_4:49700688-49700707 | None:intergenic | 45.0% | |
| CAAAGCTGCAGCAACATTGA+TGG | + | chr4_4:49700686-49700705 | Msa0685570:CDS | 45.0% | |
| AGAAAATCCTGCTGGTGAGA+GGG | + | chr4_4:49700734-49700753 | Msa0685570:CDS | 45.0% | |
| AATCGTGGCTGAGAGAAAGA+AGG | + | chr4_4:49700794-49700813 | Msa0685570:CDS | 45.0% | |
| ATCGTGGCTGAGAGAAAGAA+GGG | + | chr4_4:49700795-49700814 | Msa0685570:CDS | 45.0% | |
| GCGTGCATTCAGTGACCAAA+GGG | - | chr4_4:49699868-49699887 | None:intergenic | 50.0% | |
| TGCGTGCATTCAGTGACCAA+AGG | - | chr4_4:49699869-49699888 | None:intergenic | 50.0% | |
| CCATGACCGTCCGAAAAATG+GGG | + | chr4_4:49699907-49699926 | Msa0685570:intron | 50.0% | |
| GCAAGCATTCACAAAGCCAG+GGG | - | chr4_4:49700000-49700019 | None:intergenic | 50.0% | |
| CTGCAAGCATTCACAAAGCC+AGG | - | chr4_4:49700002-49700021 | None:intergenic | 50.0% | |
| !! | CTGGCTTTGTGAATGCTTGC+AGG | + | chr4_4:49700000-49700019 | Msa0685570:intron | 50.0% |
| TGCAGCAGCTCCAATAATCG+CGG | + | chr4_4:49700419-49700438 | Msa0685570:CDS | 50.0% | |
| TAATCGCGGCCAAGAGAAAG+AGG | + | chr4_4:49700433-49700452 | Msa0685570:CDS | 50.0% | |
| AATCGCGGCCAAGAGAAAGA+GGG | + | chr4_4:49700434-49700453 | Msa0685570:CDS | 50.0% | |
| TGGTCTACCCCTCTTTCTCT+TGG | - | chr4_4:49700445-49700464 | None:intergenic | 50.0% | |
| AAGCATACTCTCTCACCAGC+AGG | - | chr4_4:49700570-49700589 | None:intergenic | 50.0% | |
| ! | CTGGTGAGAGAGTATGCTTC+AGG | + | chr4_4:49700571-49700590 | Msa0685570:CDS | 50.0% |
| GAGAAAATCCTGCTGGTGAG+AGG | + | chr4_4:49700733-49700752 | Msa0685570:CDS | 50.0% | |
| GCGTGCATTCAGTGACCAAA+GGG | - | chr4_4:49699868-49699887 | None:intergenic | 50.0% | |
| TGCGTGCATTCAGTGACCAA+AGG | - | chr4_4:49699869-49699888 | None:intergenic | 50.0% | |
| CCATGACCGTCCGAAAAATG+GGG | + | chr4_4:49699907-49699926 | Msa0685570:intron | 50.0% | |
| GCAAGCATTCACAAAGCCAG+GGG | - | chr4_4:49700000-49700019 | None:intergenic | 50.0% | |
| CTGCAAGCATTCACAAAGCC+AGG | - | chr4_4:49700002-49700021 | None:intergenic | 50.0% | |
| !! | CTGGCTTTGTGAATGCTTGC+AGG | + | chr4_4:49700000-49700019 | Msa0685570:intron | 50.0% |
| TGCAGCAGCTCCAATAATCG+CGG | + | chr4_4:49700419-49700438 | Msa0685570:CDS | 50.0% | |
| TAATCGCGGCCAAGAGAAAG+AGG | + | chr4_4:49700433-49700452 | Msa0685570:CDS | 50.0% | |
| AATCGCGGCCAAGAGAAAGA+GGG | + | chr4_4:49700434-49700453 | Msa0685570:CDS | 50.0% | |
| TGGTCTACCCCTCTTTCTCT+TGG | - | chr4_4:49700445-49700464 | None:intergenic | 50.0% | |
| AAGCATACTCTCTCACCAGC+AGG | - | chr4_4:49700570-49700589 | None:intergenic | 50.0% | |
| ! | CTGGTGAGAGAGTATGCTTC+AGG | + | chr4_4:49700571-49700590 | Msa0685570:CDS | 50.0% |
| GAGAAAATCCTGCTGGTGAG+AGG | + | chr4_4:49700733-49700752 | Msa0685570:CDS | 50.0% | |
| AGGCTTGAACATCAACCGCC+TGG | + | chr4_4:49699519-49699538 | Msa0685570:CDS | 55.0% | |
| !! | CCCCATTTTTCGGACGGTCA+TGG | - | chr4_4:49699910-49699929 | None:intergenic | 55.0% |
| TGACCGTCCGAAAAATGGGG+TGG | + | chr4_4:49699910-49699929 | Msa0685570:intron | 55.0% | |
| !! | GGACCACCCCATTTTTCGGA+CGG | - | chr4_4:49699916-49699935 | None:intergenic | 55.0% |
| TTGGAAGGTTACGGATCCCC+TGG | + | chr4_4:49699981-49700000 | Msa0685570:intron | 55.0% | |
| ATCGCGGCCAAGAGAAAGAG+GGG | + | chr4_4:49700435-49700454 | Msa0685570:CDS | 55.0% | |
| ATGCATACCCTCTCACCAGC+AGG | - | chr4_4:49700744-49700763 | None:intergenic | 55.0% | |
| AGGCTTGAACATCAACCGCC+TGG | + | chr4_4:49699519-49699538 | Msa0685570:CDS | 55.0% | |
| !! | CCCCATTTTTCGGACGGTCA+TGG | - | chr4_4:49699910-49699929 | None:intergenic | 55.0% |
| TGACCGTCCGAAAAATGGGG+TGG | + | chr4_4:49699910-49699929 | Msa0685570:intron | 55.0% | |
| !! | GGACCACCCCATTTTTCGGA+CGG | - | chr4_4:49699916-49699935 | None:intergenic | 55.0% |
| TTGGAAGGTTACGGATCCCC+TGG | + | chr4_4:49699981-49700000 | Msa0685570:intron | 55.0% | |
| ATCGCGGCCAAGAGAAAGAG+GGG | + | chr4_4:49700435-49700454 | Msa0685570:CDS | 55.0% | |
| ATGCATACCCTCTCACCAGC+AGG | - | chr4_4:49700744-49700763 | None:intergenic | 55.0% | |
| GGGTGGTCCAGATCCAAGCT+TGG | + | chr4_4:49699927-49699946 | Msa0685570:intron | 60.0% | |
| GGGTGGTCCAGATCCAAGCT+TGG | + | chr4_4:49699927-49699946 | Msa0685570:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 49699469 | 49700863 | 49699469 | ID=Msa0685570;Name=Msa0685570 |
| chr4_4 | mRNA | 49699469 | 49700863 | 49699469 | ID=Msa0685570-mRNA-1;Parent=Msa0685570;Name=Msa0685570-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|1|1|1|2|0|273 |
| chr4_4 | exon | 49699469 | 49699540 | 49699469 | ID=Msa0685570-mRNA-1:exon:12572;Parent=Msa0685570-mRNA-1 |
| chr4_4 | exon | 49700114 | 49700863 | 49700114 | ID=Msa0685570-mRNA-1:exon:12573;Parent=Msa0685570-mRNA-1 |
| chr4_4 | CDS | 49699469 | 49699540 | 49699469 | ID=Msa0685570-mRNA-1:cds;Parent=Msa0685570-mRNA-1 |
| chr4_4 | CDS | 49700114 | 49700863 | 49700114 | ID=Msa0685570-mRNA-1:cds;Parent=Msa0685570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
