Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685580 | XP_003606841.1 | 88.384 | 198 | 23 | 0 | 1 | 198 | 1 | 198 | 1.08e-122 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685580 | sp|Q9FK61|Y5809_ARATH | 30.070 | 143 | 95 | 4 | 4 | 144 | 11 | 150 | 3.40e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685580 | G7JEY0 | 88.384 | 198 | 23 | 0 | 1 | 198 | 1 | 198 | 5.17e-123 | 355 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0685580 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685580 | MtrunA17_Chr4g0033951 | 88.384 | 198 | 23 | 0 | 1 | 198 | 1 | 198 | 9.95e-127 | 355 |
| Msa0685580 | MtrunA17_Chr4g0033941 | 53.846 | 156 | 51 | 6 | 44 | 180 | 1 | 154 | 1.19e-37 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685580 | AT5G18090.1 | 30.070 | 143 | 95 | 4 | 4 | 144 | 11 | 150 | 3.46e-14 | 69.7 |
| Msa0685580 | AT3G17010.1 | 27.976 | 168 | 110 | 6 | 4 | 164 | 14 | 177 | 1.12e-11 | 62.8 |
| Msa0685580 | AT5G18000.1 | 31.193 | 109 | 68 | 4 | 4 | 108 | 13 | 118 | 2.15e-11 | 62.0 |
Find 34 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTCTCTTGGCCACAAT+TGG | 0.131130 | 4_4:-49705833 | None:intergenic |
| ATGTTCAAGGTGGAAATTTA+TGG | 0.176554 | 4_4:+49705755 | Msa0685580:CDS |
| TTCTTTGATGATAGAGAAAA+AGG | 0.238400 | 4_4:-49705032 | None:intergenic |
| GAAGAAAGCATCAATTATTC+TGG | 0.262336 | 4_4:+49705586 | Msa0685580:CDS |
| TGGATATGGGTGAAGAGTTT+TGG | 0.266007 | 4_4:+49705564 | Msa0685580:CDS |
| ATTATTCTGGTATGCTCTTC+TGG | 0.267481 | 4_4:+49705599 | Msa0685580:CDS |
| AGTTGGACTTGAAGAGTTCT+TGG | 0.296108 | 4_4:+49705709 | Msa0685580:CDS |
| ACTGAAGATTGTTATGGATA+TGG | 0.300118 | 4_4:+49705550 | Msa0685580:CDS |
| TCTTTCTCTTGGCCACAATT+GGG | 0.346000 | 4_4:-49705832 | None:intergenic |
| GTGGAAATTTATGGTAAGAA+TGG | 0.371009 | 4_4:+49705764 | Msa0685580:CDS |
| TTTGTCTTAGCCACAATTGT+TGG | 0.398096 | 4_4:-49705911 | None:intergenic |
| TGGTCTACCCCTCTTTCTCT+TGG | 0.402146 | 4_4:-49705843 | None:intergenic |
| TTTATCTGCGAAACTTTGAT+TGG | 0.404846 | 4_4:+49705663 | Msa0685580:CDS |
| TGGAAATTTATGGTAAGAAT+GGG | 0.420098 | 4_4:+49705765 | Msa0685580:CDS |
| CTTTCTCTTGGCCACAATTG+GGG | 0.448018 | 4_4:-49705831 | None:intergenic |
| AGTACCACTGAAGATTGTTA+TGG | 0.454780 | 4_4:+49705544 | Msa0685580:CDS |
| TCTACTAAAATAACAGAAAG+AGG | 0.490912 | 4_4:-49706040 | None:intergenic |
| TTTCTGAAAGACAACTCAGT+TGG | 0.508167 | 4_4:+49705692 | Msa0685580:CDS |
| CTGAAGATTGTTATGGATAT+GGG | 0.516066 | 4_4:+49705551 | Msa0685580:CDS |
| TAATGGAGAAAACATGTTCA+AGG | 0.519688 | 4_4:+49705742 | Msa0685580:CDS |
| CAATTGTGGCCAAGAGAAAG+AGG | 0.520539 | 4_4:+49705834 | Msa0685580:CDS |
| AAAATAACAGAAAGAGGAGC+GGG | 0.568647 | 4_4:-49706034 | None:intergenic |
| AGTTGTTGCAGCCCCAATTG+TGG | 0.571592 | 4_4:+49705820 | Msa0685580:CDS |
| TAAAATAACAGAAAGAGGAG+CGG | 0.572191 | 4_4:-49706035 | None:intergenic |
| AATTGTGGCTAAGACAAAGA+TGG | 0.585870 | 4_4:+49705916 | Msa0685580:CDS |
| AGAATCTGCACCAACAATTG+TGG | 0.587568 | 4_4:+49705901 | Msa0685580:CDS |
| ATGCTCTTCTGGTGAGAAGT+GGG | 0.591020 | 4_4:+49705610 | Msa0685580:CDS |
| CAAATGAATTACCATGCACT+TGG | 0.596053 | 4_4:-49705065 | None:intergenic |
| AGGTTTCAACACCAAGTGCA+TGG | 0.605306 | 4_4:+49705054 | Msa0685580:CDS |
| AATTGTGGCCAAGAGAAAGA+GGG | 0.618437 | 4_4:+49705835 | Msa0685580:CDS |
| TATGCTCTTCTGGTGAGAAG+TGG | 0.619565 | 4_4:+49705609 | Msa0685580:CDS |
| TGGAGAAAACATGTTCAAGG+TGG | 0.671580 | 4_4:+49705745 | Msa0685580:CDS |
| ATATCCATAACAATCTTCAG+TGG | 0.686786 | 4_4:-49705548 | None:intergenic |
| ATTGTGGCCAAGAGAAAGAG+GGG | 0.688040 | 4_4:+49705836 | Msa0685580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCAAAATATGTTTACTTTT+TGG | + | chr4_4:49705363-49705382 | Msa0685580:intron | 15.0% |
| !!! | ATCAAAATATGTTTACTTTT+TGG | + | chr4_4:49705363-49705382 | Msa0685580:intron | 15.0% |
| !! | TAGAAAAATGTTATTAAGCT+AGG | + | chr4_4:49705196-49705215 | Msa0685580:intron | 20.0% |
| !! | TATATATGTATAATCTCAGT+TGG | - | chr4_4:49705272-49705291 | None:intergenic | 20.0% |
| !! | ATTATACATATATACGAATC+CGG | + | chr4_4:49705278-49705297 | Msa0685580:intron | 20.0% |
| !! | AGATTATGACATAAAAAACA+TGG | - | chr4_4:49705518-49705537 | None:intergenic | 20.0% |
| !! | TAGAAAAATGTTATTAAGCT+AGG | + | chr4_4:49705196-49705215 | Msa0685580:intron | 20.0% |
| !! | TATATATGTATAATCTCAGT+TGG | - | chr4_4:49705272-49705291 | None:intergenic | 20.0% |
| !! | ATTATACATATATACGAATC+CGG | + | chr4_4:49705278-49705297 | Msa0685580:intron | 20.0% |
| !! | AGATTATGACATAAAAAACA+TGG | - | chr4_4:49705518-49705537 | None:intergenic | 20.0% |
| !! | TTCTTTGATGATAGAGAAAA+AGG | - | chr4_4:49705035-49705054 | None:intergenic | 25.0% |
| !! | TTTTTCTCTATCATCAAAGA+AGG | + | chr4_4:49705034-49705053 | Msa0685580:CDS | 25.0% |
| ! | AAATTATTGAGTTTGTCATC+AGG | - | chr4_4:49705328-49705347 | None:intergenic | 25.0% |
| ! | AAATATGTATGTATATGCAC+CGG | - | chr4_4:49705462-49705481 | None:intergenic | 25.0% |
| !!! | TTCTTGGTTTTCACTTATAA+TGG | + | chr4_4:49705725-49705744 | Msa0685580:CDS | 25.0% |
| ! | TGGAAATTTATGGTAAGAAT+GGG | + | chr4_4:49705765-49705784 | Msa0685580:CDS | 25.0% |
| ! | TCTACTAAAATAACAGAAAG+AGG | - | chr4_4:49706043-49706062 | None:intergenic | 25.0% |
| !! | TTCTTTGATGATAGAGAAAA+AGG | - | chr4_4:49705035-49705054 | None:intergenic | 25.0% |
| !! | TTTTTCTCTATCATCAAAGA+AGG | + | chr4_4:49705034-49705053 | Msa0685580:CDS | 25.0% |
| ! | AAATTATTGAGTTTGTCATC+AGG | - | chr4_4:49705328-49705347 | None:intergenic | 25.0% |
| ! | AAATATGTATGTATATGCAC+CGG | - | chr4_4:49705462-49705481 | None:intergenic | 25.0% |
| !!! | TTCTTGGTTTTCACTTATAA+TGG | + | chr4_4:49705725-49705744 | Msa0685580:CDS | 25.0% |
| ! | TGGAAATTTATGGTAAGAAT+GGG | + | chr4_4:49705765-49705784 | Msa0685580:CDS | 25.0% |
| ! | TCTACTAAAATAACAGAAAG+AGG | - | chr4_4:49706043-49706062 | None:intergenic | 25.0% |
| ! | TTGATGATAGAGAAAAAGGA+TGG | - | chr4_4:49705031-49705050 | None:intergenic | 30.0% |
| ! | GGAAATCTGAGATTTAAACT+TGG | - | chr4_4:49705232-49705251 | None:intergenic | 30.0% |
| !! | TTGGTGAATGAGTTTTAATC+AGG | - | chr4_4:49705253-49705272 | None:intergenic | 30.0% |
| ATATCCATAACAATCTTCAG+TGG | - | chr4_4:49705551-49705570 | None:intergenic | 30.0% | |
| ACTGAAGATTGTTATGGATA+TGG | + | chr4_4:49705550-49705569 | Msa0685580:CDS | 30.0% | |
| CTGAAGATTGTTATGGATAT+GGG | + | chr4_4:49705551-49705570 | Msa0685580:CDS | 30.0% | |
| !! | GAAGAAAGCATCAATTATTC+TGG | + | chr4_4:49705586-49705605 | Msa0685580:CDS | 30.0% |
| TTTATCTGCGAAACTTTGAT+TGG | + | chr4_4:49705663-49705682 | Msa0685580:CDS | 30.0% | |
| TAATGGAGAAAACATGTTCA+AGG | + | chr4_4:49705742-49705761 | Msa0685580:CDS | 30.0% | |
| ATGTTCAAGGTGGAAATTTA+TGG | + | chr4_4:49705755-49705774 | Msa0685580:CDS | 30.0% | |
| GTGGAAATTTATGGTAAGAA+TGG | + | chr4_4:49705764-49705783 | Msa0685580:CDS | 30.0% | |
| ! | TTTTTAACGCATACTCTCTT+TGG | - | chr4_4:49705956-49705975 | None:intergenic | 30.0% |
| ACCAACAATTGTGACAAAAA+AGG | + | chr4_4:49705994-49706013 | Msa0685580:CDS | 30.0% | |
| CCAACAATTGTGACAAAAAA+GGG | + | chr4_4:49705995-49706014 | Msa0685580:CDS | 30.0% | |
| TAAAATAACAGAAAGAGGAG+CGG | - | chr4_4:49706038-49706057 | None:intergenic | 30.0% | |
| ! | TTGATGATAGAGAAAAAGGA+TGG | - | chr4_4:49705031-49705050 | None:intergenic | 30.0% |
| ! | GGAAATCTGAGATTTAAACT+TGG | - | chr4_4:49705232-49705251 | None:intergenic | 30.0% |
| !! | TTGGTGAATGAGTTTTAATC+AGG | - | chr4_4:49705253-49705272 | None:intergenic | 30.0% |
| ATATCCATAACAATCTTCAG+TGG | - | chr4_4:49705551-49705570 | None:intergenic | 30.0% | |
| ACTGAAGATTGTTATGGATA+TGG | + | chr4_4:49705550-49705569 | Msa0685580:CDS | 30.0% | |
| CTGAAGATTGTTATGGATAT+GGG | + | chr4_4:49705551-49705570 | Msa0685580:CDS | 30.0% | |
| !! | GAAGAAAGCATCAATTATTC+TGG | + | chr4_4:49705586-49705605 | Msa0685580:CDS | 30.0% |
| TTTATCTGCGAAACTTTGAT+TGG | + | chr4_4:49705663-49705682 | Msa0685580:CDS | 30.0% | |
| TAATGGAGAAAACATGTTCA+AGG | + | chr4_4:49705742-49705761 | Msa0685580:CDS | 30.0% | |
| ATGTTCAAGGTGGAAATTTA+TGG | + | chr4_4:49705755-49705774 | Msa0685580:CDS | 30.0% | |
| GTGGAAATTTATGGTAAGAA+TGG | + | chr4_4:49705764-49705783 | Msa0685580:CDS | 30.0% | |
| ! | TTTTTAACGCATACTCTCTT+TGG | - | chr4_4:49705956-49705975 | None:intergenic | 30.0% |
| ACCAACAATTGTGACAAAAA+AGG | + | chr4_4:49705994-49706013 | Msa0685580:CDS | 30.0% | |
| CCAACAATTGTGACAAAAAA+GGG | + | chr4_4:49705995-49706014 | Msa0685580:CDS | 30.0% | |
| TAAAATAACAGAAAGAGGAG+CGG | - | chr4_4:49706038-49706057 | None:intergenic | 30.0% | |
| CAAATGAATTACCATGCACT+TGG | - | chr4_4:49705068-49705087 | None:intergenic | 35.0% | |
| ATACATCCTGAATGAGTGAA+TGG | + | chr4_4:49705414-49705433 | Msa0685580:intron | 35.0% | |
| AGTACCACTGAAGATTGTTA+TGG | + | chr4_4:49705544-49705563 | Msa0685580:CDS | 35.0% | |
| ATTATTCTGGTATGCTCTTC+TGG | + | chr4_4:49705599-49705618 | Msa0685580:CDS | 35.0% | |
| ! | TTTCTGAAAGACAACTCAGT+TGG | + | chr4_4:49705692-49705711 | Msa0685580:CDS | 35.0% |
| !!! | TCTTGCTTTTTCTTGAAGCA+TGG | - | chr4_4:49705800-49705819 | None:intergenic | 35.0% |
| ! | TTTTTCTTCCTTGACATCTG+CGG | - | chr4_4:49705879-49705898 | None:intergenic | 35.0% |
| TTTGTCTTAGCCACAATTGT+TGG | - | chr4_4:49705914-49705933 | None:intergenic | 35.0% | |
| AATTGTGGCTAAGACAAAGA+TGG | + | chr4_4:49705916-49705935 | Msa0685580:CDS | 35.0% | |
| CGTTAAAAAACAAAACGCAG+AGG | + | chr4_4:49705967-49705986 | Msa0685580:CDS | 35.0% | |
| !!! | CCCTTTTTTGTCACAATTGT+TGG | - | chr4_4:49705998-49706017 | None:intergenic | 35.0% |
| AAAATAACAGAAAGAGGAGC+GGG | - | chr4_4:49706037-49706056 | None:intergenic | 35.0% | |
| CAAATGAATTACCATGCACT+TGG | - | chr4_4:49705068-49705087 | None:intergenic | 35.0% | |
| ATACATCCTGAATGAGTGAA+TGG | + | chr4_4:49705414-49705433 | Msa0685580:intron | 35.0% | |
| AGTACCACTGAAGATTGTTA+TGG | + | chr4_4:49705544-49705563 | Msa0685580:CDS | 35.0% | |
| ATTATTCTGGTATGCTCTTC+TGG | + | chr4_4:49705599-49705618 | Msa0685580:CDS | 35.0% | |
| ! | TTTCTGAAAGACAACTCAGT+TGG | + | chr4_4:49705692-49705711 | Msa0685580:CDS | 35.0% |
| !!! | TCTTGCTTTTTCTTGAAGCA+TGG | - | chr4_4:49705800-49705819 | None:intergenic | 35.0% |
| ! | TTTTTCTTCCTTGACATCTG+CGG | - | chr4_4:49705879-49705898 | None:intergenic | 35.0% |
| TTTGTCTTAGCCACAATTGT+TGG | - | chr4_4:49705914-49705933 | None:intergenic | 35.0% | |
| AATTGTGGCTAAGACAAAGA+TGG | + | chr4_4:49705916-49705935 | Msa0685580:CDS | 35.0% | |
| CGTTAAAAAACAAAACGCAG+AGG | + | chr4_4:49705967-49705986 | Msa0685580:CDS | 35.0% | |
| !!! | CCCTTTTTTGTCACAATTGT+TGG | - | chr4_4:49705998-49706017 | None:intergenic | 35.0% |
| AAAATAACAGAAAGAGGAGC+GGG | - | chr4_4:49706037-49706056 | None:intergenic | 35.0% | |
| CTTGCTGATGAGAAAGTTAG+AGG | + | chr4_4:49705149-49705168 | Msa0685580:intron | 40.0% | |
| ! | TGGATATGGGTGAAGAGTTT+TGG | + | chr4_4:49705564-49705583 | Msa0685580:CDS | 40.0% |
| AGTTGGACTTGAAGAGTTCT+TGG | + | chr4_4:49705709-49705728 | Msa0685580:CDS | 40.0% | |
| TGGAGAAAACATGTTCAAGG+TGG | + | chr4_4:49705745-49705764 | Msa0685580:CDS | 40.0% | |
| TCTTTCTCTTGGCCACAATT+GGG | - | chr4_4:49705835-49705854 | None:intergenic | 40.0% | |
| AATTGTGGCCAAGAGAAAGA+GGG | + | chr4_4:49705835-49705854 | Msa0685580:CDS | 40.0% | |
| !!! | ACATCTGCGGGATTTTTTCT+TGG | - | chr4_4:49705866-49705885 | None:intergenic | 40.0% |
| AAAAAATCCCGCAGATGTCA+AGG | + | chr4_4:49705868-49705887 | Msa0685580:CDS | 40.0% | |
| ! | TTTTCTTCCTTGACATCTGC+GGG | - | chr4_4:49705878-49705897 | None:intergenic | 40.0% |
| AGAATCTGCACCAACAATTG+TGG | + | chr4_4:49705901-49705920 | Msa0685580:CDS | 40.0% | |
| CTTGCTGATGAGAAAGTTAG+AGG | + | chr4_4:49705149-49705168 | Msa0685580:intron | 40.0% | |
| ! | TGGATATGGGTGAAGAGTTT+TGG | + | chr4_4:49705564-49705583 | Msa0685580:CDS | 40.0% |
| AGTTGGACTTGAAGAGTTCT+TGG | + | chr4_4:49705709-49705728 | Msa0685580:CDS | 40.0% | |
| TGGAGAAAACATGTTCAAGG+TGG | + | chr4_4:49705745-49705764 | Msa0685580:CDS | 40.0% | |
| TCTTTCTCTTGGCCACAATT+GGG | - | chr4_4:49705835-49705854 | None:intergenic | 40.0% | |
| AATTGTGGCCAAGAGAAAGA+GGG | + | chr4_4:49705835-49705854 | Msa0685580:CDS | 40.0% | |
| !!! | ACATCTGCGGGATTTTTTCT+TGG | - | chr4_4:49705866-49705885 | None:intergenic | 40.0% |
| AAAAAATCCCGCAGATGTCA+AGG | + | chr4_4:49705868-49705887 | Msa0685580:CDS | 40.0% | |
| ! | TTTTCTTCCTTGACATCTGC+GGG | - | chr4_4:49705878-49705897 | None:intergenic | 40.0% |
| AGAATCTGCACCAACAATTG+TGG | + | chr4_4:49705901-49705920 | Msa0685580:CDS | 40.0% | |
| AGGTTTCAACACCAAGTGCA+TGG | + | chr4_4:49705054-49705073 | Msa0685580:CDS | 45.0% | |
| TTTGGACCGTTCATCTCGAT+TGG | + | chr4_4:49705381-49705400 | Msa0685580:intron | 45.0% | |
| CTGCAACCATTCACTCATTC+AGG | - | chr4_4:49705423-49705442 | None:intergenic | 45.0% | |
| TATGCTCTTCTGGTGAGAAG+TGG | + | chr4_4:49705609-49705628 | Msa0685580:CDS | 45.0% | |
| ATGCTCTTCTGGTGAGAAGT+GGG | + | chr4_4:49705610-49705629 | Msa0685580:CDS | 45.0% | |
| CTTTCTCTTGGCCACAATTG+GGG | - | chr4_4:49705834-49705853 | None:intergenic | 45.0% | |
| CTCTTTCTCTTGGCCACAAT+TGG | - | chr4_4:49705836-49705855 | None:intergenic | 45.0% | |
| CAATTGTGGCCAAGAGAAAG+AGG | + | chr4_4:49705834-49705853 | Msa0685580:CDS | 45.0% | |
| ATTGTGGCCAAGAGAAAGAG+GGG | + | chr4_4:49705836-49705855 | Msa0685580:CDS | 45.0% | |
| AGGTTTCAACACCAAGTGCA+TGG | + | chr4_4:49705054-49705073 | Msa0685580:CDS | 45.0% | |
| TTTGGACCGTTCATCTCGAT+TGG | + | chr4_4:49705381-49705400 | Msa0685580:intron | 45.0% | |
| CTGCAACCATTCACTCATTC+AGG | - | chr4_4:49705423-49705442 | None:intergenic | 45.0% | |
| TATGCTCTTCTGGTGAGAAG+TGG | + | chr4_4:49705609-49705628 | Msa0685580:CDS | 45.0% | |
| ATGCTCTTCTGGTGAGAAGT+GGG | + | chr4_4:49705610-49705629 | Msa0685580:CDS | 45.0% | |
| CTTTCTCTTGGCCACAATTG+GGG | - | chr4_4:49705834-49705853 | None:intergenic | 45.0% | |
| CTCTTTCTCTTGGCCACAAT+TGG | - | chr4_4:49705836-49705855 | None:intergenic | 45.0% | |
| CAATTGTGGCCAAGAGAAAG+AGG | + | chr4_4:49705834-49705853 | Msa0685580:CDS | 45.0% | |
| ATTGTGGCCAAGAGAAAGAG+GGG | + | chr4_4:49705836-49705855 | Msa0685580:CDS | 45.0% | |
| TACGAATCCGGATTCCCTAC+AGG | + | chr4_4:49705290-49705309 | Msa0685580:intron | 50.0% | |
| ACGAATCCGGATTCCCTACA+GGG | + | chr4_4:49705291-49705310 | Msa0685580:intron | 50.0% | |
| GGATTGTCTGAACCCCTGTA+GGG | - | chr4_4:49705307-49705326 | None:intergenic | 50.0% | |
| AGGATTGTCTGAACCCCTGT+AGG | - | chr4_4:49705308-49705327 | None:intergenic | 50.0% | |
| GACCGTTCATCTCGATTGGA+CGG | + | chr4_4:49705385-49705404 | Msa0685580:intron | 50.0% | |
| GACCGTCCAATCGAGATGAA+CGG | - | chr4_4:49705390-49705409 | None:intergenic | 50.0% | |
| AGTGAATGGTTGCAGTCTGC+AGG | + | chr4_4:49705428-49705447 | Msa0685580:intron | 50.0% | |
| GTGAATGGTTGCAGTCTGCA+GGG | + | chr4_4:49705429-49705448 | Msa0685580:intron | 50.0% | |
| AGTTGTTGCAGCCCCAATTG+TGG | + | chr4_4:49705820-49705839 | Msa0685580:CDS | 50.0% | |
| TGGTCTACCCCTCTTTCTCT+TGG | - | chr4_4:49705846-49705865 | None:intergenic | 50.0% | |
| TACGAATCCGGATTCCCTAC+AGG | + | chr4_4:49705290-49705309 | Msa0685580:intron | 50.0% | |
| ACGAATCCGGATTCCCTACA+GGG | + | chr4_4:49705291-49705310 | Msa0685580:intron | 50.0% | |
| GGATTGTCTGAACCCCTGTA+GGG | - | chr4_4:49705307-49705326 | None:intergenic | 50.0% | |
| AGGATTGTCTGAACCCCTGT+AGG | - | chr4_4:49705308-49705327 | None:intergenic | 50.0% | |
| GACCGTTCATCTCGATTGGA+CGG | + | chr4_4:49705385-49705404 | Msa0685580:intron | 50.0% | |
| GACCGTCCAATCGAGATGAA+CGG | - | chr4_4:49705390-49705409 | None:intergenic | 50.0% | |
| AGTGAATGGTTGCAGTCTGC+AGG | + | chr4_4:49705428-49705447 | Msa0685580:intron | 50.0% | |
| GTGAATGGTTGCAGTCTGCA+GGG | + | chr4_4:49705429-49705448 | Msa0685580:intron | 50.0% | |
| AGTTGTTGCAGCCCCAATTG+TGG | + | chr4_4:49705820-49705839 | Msa0685580:CDS | 50.0% | |
| TGGTCTACCCCTCTTTCTCT+TGG | - | chr4_4:49705846-49705865 | None:intergenic | 50.0% | |
| CGAATCCGGATTCCCTACAG+GGG | + | chr4_4:49705292-49705311 | Msa0685580:intron | 55.0% | |
| CTGAACCCCTGTAGGGAATC+CGG | - | chr4_4:49705300-49705319 | None:intergenic | 55.0% | |
| GTTGCAGTCTGCAGGGAATC+TGG | + | chr4_4:49705436-49705455 | Msa0685580:intron | 55.0% | |
| CGAATCCGGATTCCCTACAG+GGG | + | chr4_4:49705292-49705311 | Msa0685580:intron | 55.0% | |
| CTGAACCCCTGTAGGGAATC+CGG | - | chr4_4:49705300-49705319 | None:intergenic | 55.0% | |
| GTTGCAGTCTGCAGGGAATC+TGG | + | chr4_4:49705436-49705455 | Msa0685580:intron | 55.0% | |
| CAGTCTGCAGGGAATCTGGC+CGG | + | chr4_4:49705440-49705459 | Msa0685580:intron | 60.0% | |
| CAGTCTGCAGGGAATCTGGC+CGG | + | chr4_4:49705440-49705459 | Msa0685580:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 49705004 | 49706066 | 49705004 | ID=Msa0685580;Name=Msa0685580 |
| chr4_4 | mRNA | 49705004 | 49706066 | 49705004 | ID=Msa0685580-mRNA-1;Parent=Msa0685580;Name=Msa0685580-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|1|1|2|0|198 |
| chr4_4 | exon | 49705004 | 49705075 | 49705004 | ID=Msa0685580-mRNA-1:exon:12574;Parent=Msa0685580-mRNA-1 |
| chr4_4 | exon | 49705542 | 49706066 | 49705542 | ID=Msa0685580-mRNA-1:exon:12575;Parent=Msa0685580-mRNA-1 |
| chr4_4 | CDS | 49705004 | 49705075 | 49705004 | ID=Msa0685580-mRNA-1:cds;Parent=Msa0685580-mRNA-1 |
| chr4_4 | CDS | 49705542 | 49706066 | 49705542 | ID=Msa0685580-mRNA-1:cds;Parent=Msa0685580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
