Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686590 | XP_024642129.1 | 87.671 | 438 | 25 | 2 | 66 | 474 | 1 | 438 | 0.0 | 800 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686590 | sp|Q9SZL8|FRS5_ARATH | 35.449 | 457 | 251 | 9 | 58 | 470 | 62 | 518 | 4.25e-85 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686590 | A0A2K3N9Z9 | 77.854 | 438 | 68 | 2 | 66 | 474 | 1 | 438 | 0.0 | 720 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0686590 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686590 | MtrunA17_Chr2g0296781 | 72.603 | 438 | 91 | 2 | 66 | 474 | 1 | 438 | 0.0 | 680 |
| Msa0686590 | MtrunA17_Chr1g0196541 | 65.068 | 438 | 124 | 1 | 66 | 474 | 1 | 438 | 0.0 | 604 |
| Msa0686590 | MtrunA17_Chr6g0477261 | 75.841 | 327 | 50 | 2 | 177 | 474 | 1 | 327 | 0.0 | 526 |
| Msa0686590 | MtrunA17_Chr5g0441581 | 47.085 | 446 | 192 | 7 | 62 | 474 | 32 | 466 | 2.26e-133 | 401 |
| Msa0686590 | MtrunA17_Chr5g0448761 | 35.914 | 465 | 253 | 9 | 52 | 471 | 46 | 510 | 1.42e-86 | 282 |
| Msa0686590 | MtrunA17_Chr1g0202341 | 35.426 | 446 | 248 | 8 | 62 | 470 | 51 | 493 | 4.82e-81 | 265 |
| Msa0686590 | MtrunA17_Chr2g0329031 | 33.713 | 439 | 254 | 9 | 62 | 469 | 14 | 446 | 2.98e-78 | 259 |
| Msa0686590 | MtrunA17_Chr3g0080351 | 35.616 | 438 | 250 | 7 | 62 | 471 | 76 | 509 | 4.76e-78 | 260 |
| Msa0686590 | MtrunA17_Chr1g0207551 | 33.559 | 444 | 263 | 4 | 62 | 473 | 34 | 477 | 1.81e-77 | 258 |
| Msa0686590 | MtrunA17_Chr2g0291581 | 34.382 | 445 | 247 | 6 | 58 | 470 | 67 | 498 | 7.61e-75 | 249 |
| Msa0686590 | MtrunA17_Chr2g0291591 | 33.182 | 440 | 261 | 5 | 62 | 470 | 64 | 501 | 2.32e-71 | 236 |
| Msa0686590 | MtrunA17_Chr5g0448511 | 40.000 | 230 | 137 | 1 | 242 | 470 | 52 | 281 | 8.05e-59 | 203 |
| Msa0686590 | MtrunA17_Chr8g0363841 | 30.714 | 420 | 257 | 6 | 69 | 454 | 24 | 443 | 4.66e-53 | 189 |
| Msa0686590 | MtrunA17_Chr3g0118611 | 34.756 | 328 | 190 | 7 | 158 | 465 | 57 | 380 | 3.28e-52 | 189 |
| Msa0686590 | MtrunA17_Chr1g0198761 | 29.505 | 444 | 264 | 11 | 67 | 462 | 52 | 494 | 7.84e-52 | 187 |
| Msa0686590 | MtrunA17_Chr2g0324011 | 27.107 | 439 | 274 | 9 | 62 | 460 | 10 | 442 | 4.58e-51 | 183 |
| Msa0686590 | MtrunA17_Chr5g0440451 | 29.449 | 472 | 268 | 13 | 50 | 470 | 31 | 488 | 1.93e-50 | 185 |
| Msa0686590 | MtrunA17_Chr2g0287651 | 27.790 | 439 | 277 | 8 | 65 | 467 | 78 | 512 | 1.20e-49 | 182 |
| Msa0686590 | MtrunA17_Chr2g0276841 | 29.070 | 430 | 245 | 12 | 77 | 456 | 85 | 504 | 7.95e-49 | 178 |
| Msa0686590 | MtrunA17_Chr1g0203051 | 27.692 | 455 | 276 | 11 | 62 | 478 | 86 | 525 | 7.27e-48 | 175 |
| Msa0686590 | MtrunA17_Chr2g0287061 | 31.981 | 419 | 256 | 11 | 62 | 469 | 183 | 583 | 1.73e-47 | 175 |
| Msa0686590 | MtrunA17_Chr5g0431001 | 28.406 | 433 | 247 | 10 | 58 | 436 | 57 | 480 | 3.77e-47 | 170 |
| Msa0686590 | MtrunA17_Chr3g0082121 | 29.202 | 476 | 270 | 16 | 42 | 467 | 17 | 475 | 2.95e-45 | 168 |
| Msa0686590 | MtrunA17_Chr6g0458391 | 25.173 | 433 | 289 | 7 | 61 | 467 | 224 | 647 | 6.62e-39 | 150 |
| Msa0686590 | MtrunA17_Chr2g0294841 | 24.887 | 442 | 267 | 11 | 61 | 448 | 44 | 474 | 3.33e-38 | 148 |
| Msa0686590 | MtrunA17_Chr2g0290391 | 25.495 | 455 | 273 | 13 | 49 | 448 | 42 | 485 | 4.54e-36 | 142 |
| Msa0686590 | MtrunA17_Chr1g0203721 | 24.828 | 435 | 286 | 7 | 68 | 463 | 69 | 501 | 5.57e-36 | 142 |
| Msa0686590 | MtrunA17_Chr6g0476431 | 65.116 | 86 | 30 | 0 | 66 | 151 | 1 | 86 | 7.55e-33 | 120 |
| Msa0686590 | MtrunA17_Chr1g0164591 | 37.158 | 183 | 100 | 4 | 246 | 420 | 133 | 308 | 3.62e-31 | 122 |
| Msa0686590 | MtrunA17_Chr7g0258861 | 27.857 | 280 | 166 | 7 | 62 | 305 | 10 | 289 | 6.79e-26 | 107 |
| Msa0686590 | MtrunA17_Chr6g0451441 | 33.939 | 165 | 102 | 4 | 62 | 223 | 87 | 247 | 8.67e-19 | 89.0 |
| Msa0686590 | MtrunA17_Chr1g0149131 | 29.091 | 110 | 77 | 1 | 307 | 415 | 1 | 110 | 5.56e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686590 | AT4G38180.1 | 35.449 | 457 | 251 | 9 | 58 | 470 | 62 | 518 | 4.32e-86 | 281 |
| Msa0686590 | AT4G15090.1 | 34.240 | 441 | 255 | 7 | 62 | 467 | 51 | 491 | 5.43e-78 | 260 |
| Msa0686590 | AT4G15090.5 | 34.240 | 441 | 255 | 7 | 62 | 467 | 51 | 491 | 5.43e-78 | 260 |
| Msa0686590 | AT4G15090.3 | 34.240 | 441 | 255 | 7 | 62 | 467 | 51 | 491 | 5.43e-78 | 260 |
| Msa0686590 | AT4G15090.2 | 34.240 | 441 | 255 | 7 | 62 | 467 | 51 | 491 | 5.43e-78 | 260 |
| Msa0686590 | AT4G15090.4 | 34.240 | 441 | 255 | 7 | 62 | 467 | 51 | 491 | 5.43e-78 | 260 |
| Msa0686590 | AT1G76320.3 | 33.486 | 436 | 252 | 5 | 66 | 469 | 1 | 430 | 3.72e-74 | 247 |
| Msa0686590 | AT1G76320.2 | 33.486 | 436 | 252 | 5 | 66 | 469 | 1 | 430 | 1.06e-73 | 247 |
| Msa0686590 | AT1G76320.1 | 33.486 | 436 | 252 | 5 | 66 | 469 | 1 | 430 | 1.23e-73 | 247 |
| Msa0686590 | AT1G76320.4 | 33.486 | 436 | 252 | 5 | 66 | 469 | 1 | 430 | 1.23e-73 | 247 |
| Msa0686590 | AT3G22170.2 | 31.385 | 462 | 279 | 7 | 48 | 473 | 47 | 506 | 2.00e-69 | 237 |
| Msa0686590 | AT3G22170.1 | 31.385 | 462 | 279 | 7 | 48 | 473 | 47 | 506 | 2.00e-69 | 237 |
| Msa0686590 | AT1G80010.1 | 31.144 | 472 | 281 | 10 | 48 | 478 | 80 | 548 | 1.91e-62 | 216 |
| Msa0686590 | AT1G52520.1 | 28.992 | 476 | 300 | 11 | 20 | 467 | 46 | 511 | 2.30e-61 | 213 |
| Msa0686590 | AT2G27110.2 | 30.155 | 451 | 275 | 9 | 43 | 470 | 30 | 463 | 1.64e-58 | 207 |
| Msa0686590 | AT2G27110.1 | 30.155 | 451 | 275 | 9 | 43 | 470 | 30 | 463 | 1.64e-58 | 207 |
| Msa0686590 | AT2G32250.5 | 32.195 | 410 | 250 | 10 | 66 | 465 | 42 | 433 | 3.44e-58 | 205 |
| Msa0686590 | AT2G32250.8 | 32.195 | 410 | 250 | 10 | 66 | 465 | 1 | 392 | 4.10e-58 | 205 |
| Msa0686590 | AT2G32250.7 | 32.195 | 410 | 250 | 10 | 66 | 465 | 1 | 392 | 4.32e-58 | 205 |
| Msa0686590 | AT2G32250.6 | 32.195 | 410 | 250 | 10 | 66 | 465 | 42 | 433 | 4.58e-58 | 206 |
| Msa0686590 | AT2G32250.1 | 32.195 | 410 | 250 | 10 | 66 | 465 | 42 | 433 | 4.58e-58 | 206 |
| Msa0686590 | AT2G32250.3 | 32.195 | 410 | 250 | 10 | 66 | 465 | 42 | 433 | 4.58e-58 | 206 |
| Msa0686590 | AT2G32250.2 | 32.195 | 410 | 250 | 10 | 66 | 465 | 42 | 433 | 5.48e-58 | 205 |
| Msa0686590 | AT2G32250.4 | 32.195 | 410 | 250 | 10 | 66 | 465 | 42 | 433 | 5.48e-58 | 205 |
| Msa0686590 | AT4G19990.5 | 31.336 | 434 | 260 | 10 | 44 | 454 | 8 | 426 | 1.65e-52 | 189 |
| Msa0686590 | AT4G19990.3 | 31.336 | 434 | 260 | 10 | 44 | 454 | 8 | 426 | 1.69e-52 | 189 |
| Msa0686590 | AT4G19990.4 | 31.336 | 434 | 260 | 10 | 44 | 454 | 8 | 426 | 1.69e-52 | 189 |
| Msa0686590 | AT4G19990.7 | 31.336 | 434 | 260 | 10 | 44 | 454 | 22 | 440 | 1.73e-52 | 189 |
| Msa0686590 | AT4G19990.6 | 31.336 | 434 | 260 | 10 | 44 | 454 | 8 | 426 | 2.01e-52 | 189 |
| Msa0686590 | AT4G19990.2 | 31.336 | 434 | 260 | 10 | 44 | 454 | 8 | 426 | 2.01e-52 | 189 |
| Msa0686590 | AT2G27110.3 | 33.876 | 307 | 179 | 6 | 186 | 470 | 14 | 318 | 2.13e-52 | 189 |
| Msa0686590 | AT4G19990.1 | 32.533 | 375 | 230 | 7 | 84 | 454 | 14 | 369 | 4.25e-52 | 187 |
| Msa0686590 | AT4G38170.1 | 35.776 | 232 | 147 | 2 | 242 | 471 | 53 | 284 | 2.93e-51 | 183 |
| Msa0686590 | AT5G18960.2 | 28.989 | 445 | 235 | 12 | 62 | 469 | 211 | 611 | 1.33e-48 | 179 |
| Msa0686590 | AT5G18960.1 | 28.989 | 445 | 235 | 12 | 62 | 469 | 211 | 611 | 1.33e-48 | 179 |
| Msa0686590 | AT3G06250.2 | 29.596 | 446 | 228 | 15 | 62 | 469 | 190 | 587 | 2.75e-47 | 175 |
| Msa0686590 | AT3G06250.1 | 29.596 | 446 | 228 | 15 | 62 | 469 | 190 | 587 | 2.75e-47 | 175 |
| Msa0686590 | AT3G06250.3 | 29.596 | 446 | 228 | 15 | 62 | 469 | 190 | 587 | 2.75e-47 | 175 |
| Msa0686590 | AT1G10240.2 | 27.212 | 452 | 267 | 13 | 48 | 448 | 34 | 474 | 6.04e-42 | 159 |
| Msa0686590 | AT1G10240.1 | 27.212 | 452 | 267 | 13 | 48 | 448 | 34 | 474 | 6.04e-42 | 159 |
| Msa0686590 | AT5G28530.3 | 22.833 | 473 | 301 | 10 | 61 | 477 | 54 | 518 | 1.95e-30 | 125 |
| Msa0686590 | AT5G28530.2 | 22.833 | 473 | 301 | 10 | 61 | 477 | 54 | 518 | 1.95e-30 | 125 |
| Msa0686590 | AT5G28530.1 | 23.109 | 476 | 298 | 11 | 62 | 477 | 55 | 522 | 2.86e-30 | 125 |
| Msa0686590 | AT5G28530.5 | 22.299 | 435 | 287 | 11 | 61 | 477 | 54 | 455 | 1.40e-22 | 101 |
| Msa0686590 | AT5G28530.4 | 22.603 | 438 | 284 | 12 | 62 | 477 | 55 | 459 | 2.53e-22 | 100 |
Find 84 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCATCTATGGCGGGCTTT+TGG | 0.214959 | 4_4:-51100682 | None:intergenic |
| CTTATGGCATTTAATGAAAA+AGG | 0.217940 | 4_4:+51100705 | Msa0686590:CDS |
| AAGGAAAGCAGGGCTGATTT+TGG | 0.269315 | 4_4:+51101063 | Msa0686590:CDS |
| CTTTAGATGTAACAAGAATA+TGG | 0.300326 | 4_4:+51100101 | Msa0686590:CDS |
| CTAAAGTACCGTGCCTTGTT+TGG | 0.309171 | 4_4:-51100084 | None:intergenic |
| TGTATGTGAGGGACGTGTTT+TGG | 0.313235 | 4_4:+51100914 | Msa0686590:CDS |
| ATATGGGGTCTCACATAAAA+AGG | 0.316365 | 4_4:+51100118 | Msa0686590:CDS |
| TCTTTCACTAGATGATGATT+TGG | 0.321925 | 4_4:-51099698 | None:intergenic |
| TTGGGCTAAGGCCATGATTA+TGG | 0.325447 | 4_4:-51100065 | None:intergenic |
| CTAAATGTCATTTCAGTACT+AGG | 0.330949 | 4_4:-51099787 | None:intergenic |
| TCAGGATAAGGCAATGAAAA+AGG | 0.353873 | 4_4:+51100642 | Msa0686590:CDS |
| CCTGTCATCTTGTGTCTCTA+TGG | 0.365282 | 4_4:-51101253 | None:intergenic |
| CTTATCCTGATCAGTAATAA+TGG | 0.365698 | 4_4:-51100629 | None:intergenic |
| AATGCCATAAGCACCATCTA+TGG | 0.384177 | 4_4:-51100693 | None:intergenic |
| TATGCTCGACGTATGGGTTT+CGG | 0.385909 | 4_4:+51099844 | Msa0686590:CDS |
| TAAAGTACCGTGCCTTGTTT+GGG | 0.391492 | 4_4:-51100083 | None:intergenic |
| TCACGGTCAATCTGTGTTGT+TGG | 0.402217 | 4_4:+51100516 | Msa0686590:CDS |
| CCCGCCATAGATGGTGCTTA+TGG | 0.403659 | 4_4:+51100689 | Msa0686590:CDS |
| GCTTTACATTCATTTGCAAT+TGG | 0.412114 | 4_4:+51099526 | Msa0686590:CDS |
| AAATGCCATTATTACTGATC+AGG | 0.420229 | 4_4:+51100624 | Msa0686590:CDS |
| ACTGAATGCATGTATATGTT+TGG | 0.428371 | 4_4:+51100008 | Msa0686590:CDS |
| TGATCAGTAATAATGGCATT+TGG | 0.436971 | 4_4:-51100622 | None:intergenic |
| TTTAGATGTAACAAGAATAT+GGG | 0.441345 | 4_4:+51100102 | Msa0686590:CDS |
| TCCCAAAAGCCCGCCATAGA+TGG | 0.444126 | 4_4:+51100680 | Msa0686590:CDS |
| TCCATGGTTGTTGAAGCAAA+TGG | 0.444231 | 4_4:+51100192 | Msa0686590:CDS |
| CATGAATTATGCTCGACGTA+TGG | 0.448690 | 4_4:+51099837 | Msa0686590:CDS |
| AGGTCAGGCGGCTAAGGCTT+GGG | 0.449234 | 4_4:+51100265 | Msa0686590:CDS |
| AAGGTCAGGCGGCTAAGGCT+TGG | 0.449609 | 4_4:+51100264 | Msa0686590:CDS |
| CATGATAATGAATGGTTGAA+AGG | 0.452443 | 4_4:+51100859 | Msa0686590:CDS |
| ATGATAATGAATGGTTGAAA+GGG | 0.468007 | 4_4:+51100860 | Msa0686590:CDS |
| CACGGTCAATCTGTGTTGTT+GGG | 0.468108 | 4_4:+51100517 | Msa0686590:CDS |
| ACTCCAACAAAAGGAGCAAA+AGG | 0.476605 | 4_4:-51100487 | None:intergenic |
| GAAACTATATAGACAAGGTC+AGG | 0.479084 | 4_4:+51100250 | Msa0686590:CDS |
| ATGAATTATGCTCGACGTAT+GGG | 0.482988 | 4_4:+51099838 | Msa0686590:CDS |
| ATTTGATGAGCAACATCGTT+GGG | 0.484819 | 4_4:+51100885 | Msa0686590:CDS |
| CTAGCATTAAAACACAATGT+AGG | 0.486737 | 4_4:+51099980 | Msa0686590:CDS |
| CCATGGTTGTTGAAGCAAAT+GGG | 0.489569 | 4_4:+51100193 | Msa0686590:CDS |
| TAAATGTCATTTCAGTACTA+GGG | 0.491511 | 4_4:-51099786 | None:intergenic |
| CATTATTACTGATCAGGATA+AGG | 0.492137 | 4_4:+51100630 | Msa0686590:CDS |
| GGGTATGAGAATCTCACATT+TGG | 0.494704 | 4_4:+51100213 | Msa0686590:CDS |
| ATAAGATTGAAAAGGAAAGC+AGG | 0.500957 | 4_4:+51101052 | Msa0686590:CDS |
| TTCAAATATTGTTTGTGAAG+AGG | 0.505614 | 4_4:+51099759 | Msa0686590:CDS |
| TAGACAAGGTCAGGCGGCTA+AGG | 0.507073 | 4_4:+51100259 | Msa0686590:CDS |
| ACCGTGCCTTGTTTGGGCTA+AGG | 0.513773 | 4_4:-51100077 | None:intergenic |
| TAGCATTAAAACACAATGTA+GGG | 0.517008 | 4_4:+51099981 | Msa0686590:CDS |
| TTTGTTTAAGAGGTAGATAG+TGG | 0.517528 | 4_4:-51099491 | None:intergenic |
| ATTGAAAGATAAGATTGAAA+AGG | 0.518395 | 4_4:+51101044 | Msa0686590:CDS |
| GTTACTCTTGACCATAATCA+TGG | 0.522654 | 4_4:+51100054 | Msa0686590:CDS |
| ATATTTGTTTGATAAATAAG+TGG | 0.523411 | 4_4:-51100458 | None:intergenic |
| TGATGATTTACTCCAACAAA+AGG | 0.532909 | 4_4:-51100496 | None:intergenic |
| TTCTGGGCAGATCAAGATGT+AGG | 0.540759 | 4_4:+51100395 | Msa0686590:intron |
| CCCATTTGCTTCAACAACCA+TGG | 0.544932 | 4_4:-51100193 | None:intergenic |
| ACATGGTTAGAATGCATGTA+TGG | 0.547181 | 4_4:+51100592 | Msa0686590:CDS |
| TACTGAAATGACATTTAGCT+CGG | 0.553939 | 4_4:+51099792 | Msa0686590:CDS |
| CCATAAGCACCATCTATGGC+GGG | 0.556728 | 4_4:-51100689 | None:intergenic |
| AATGCATGTATATGTTTGGA+TGG | 0.568180 | 4_4:+51100012 | Msa0686590:CDS |
| AATGACATTTAGCTCGGAAG+CGG | 0.579804 | 4_4:+51099798 | Msa0686590:CDS |
| TCATAGCCTCTGCATGTCTG+TGG | 0.580073 | 4_4:+51099466 | None:intergenic |
| TCTAGTGAAAGAGAAAATGA+AGG | 0.580074 | 4_4:+51099709 | Msa0686590:CDS |
| AGCATAATTCATGTAATACA+AGG | 0.583901 | 4_4:-51099827 | None:intergenic |
| TCGCTGTGTAGTTGACATCC+CGG | 0.586566 | 4_4:-51100938 | None:intergenic |
| TAAGATTGAAAAGGAAAGCA+GGG | 0.588196 | 4_4:+51101053 | Msa0686590:CDS |
| TATTTGATGAGCAACATCGT+TGG | 0.589940 | 4_4:+51100884 | Msa0686590:CDS |
| GCCATAAGCACCATCTATGG+CGG | 0.599437 | 4_4:-51100690 | None:intergenic |
| TTAGAGATTAATGATCAAGC+TGG | 0.603736 | 4_4:+51100144 | Msa0686590:CDS |
| AACACGTCCCTCACATACAC+AGG | 0.605724 | 4_4:-51100910 | None:intergenic |
| TTACTTGGTTATTCACCACA+TGG | 0.605832 | 4_4:+51100575 | Msa0686590:CDS |
| GCCTTAGCCCAAACAAGGCA+CGG | 0.608538 | 4_4:+51100076 | Msa0686590:CDS |
| TCATGGCCTTAGCCCAAACA+AGG | 0.608595 | 4_4:+51100071 | Msa0686590:CDS |
| ATGAGCTACATGATAATGAA+TGG | 0.609646 | 4_4:+51100851 | Msa0686590:CDS |
| AGGGCTGCATATGAATACTT+TGG | 0.613424 | 4_4:+51100415 | Msa0686590:CDS |
| AAATGTCATTTCAGTACTAG+GGG | 0.615186 | 4_4:-51099785 | None:intergenic |
| TCTGGGCAGATCAAGATGTA+GGG | 0.615254 | 4_4:+51100396 | Msa0686590:intron |
| AAAGCGATTTCGTAGAGAGG+TGG | 0.624373 | 4_4:+51100809 | Msa0686590:CDS |
| TTTGTTGGAGTAAATCATCA+CGG | 0.639777 | 4_4:+51100499 | Msa0686590:CDS |
| GTTGGGTTCCTGTGTATGTG+AGG | 0.643514 | 4_4:+51100902 | Msa0686590:CDS |
| TTAGATGTAACAAGAATATG+GGG | 0.645113 | 4_4:+51100103 | Msa0686590:CDS |
| GCAAAAGCGATTTCGTAGAG+AGG | 0.656210 | 4_4:+51100806 | Msa0686590:CDS |
| TTGGGTTCCTGTGTATGTGA+GGG | 0.656328 | 4_4:+51100903 | Msa0686590:CDS |
| ACTATATAGACAAGGTCAGG+CGG | 0.657287 | 4_4:+51100253 | Msa0686590:CDS |
| GTGGTTCCACAGACATGCAG+AGG | 0.659349 | 4_4:-51099472 | None:intergenic |
| CTGTAGAAACTATATAGACA+AGG | 0.659640 | 4_4:+51100245 | Msa0686590:CDS |
| TTGTGCACTCTTATCACATG+AGG | 0.680978 | 4_4:+51100540 | Msa0686590:CDS |
| ATACATGCATTCTAACCATG+TGG | 0.718210 | 4_4:-51100590 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAGTATGATGATAATTT+AGG | + | chr4_4:51099736-51099755 | Msa0686590:CDS | 15.0% |
| !! | ATATTTGTTTGATAAATAAG+TGG | - | chr4_4:51100461-51100480 | None:intergenic | 15.0% |
| !!! | AAAAAGTATGATGATAATTT+AGG | + | chr4_4:51099736-51099755 | Msa0686590:CDS | 15.0% |
| !! | ATATTTGTTTGATAAATAAG+TGG | - | chr4_4:51100461-51100480 | None:intergenic | 15.0% |
| !!! | AATAGAAACTTTTGTTTAAG+AGG | - | chr4_4:51099504-51099523 | None:intergenic | 20.0% |
| !! | ATTTACAAGTAAGTATTTGT+CGG | + | chr4_4:51099549-51099568 | Msa0686590:intron | 20.0% |
| !! | TTTGACTATGATTAATTGTT+TGG | + | chr4_4:51099626-51099645 | Msa0686590:intron | 20.0% |
| !! | AGTAAAATAAGTTCGAAAAA+TGG | + | chr4_4:51099871-51099890 | Msa0686590:CDS | 20.0% |
| !! | TTTAGATGTAACAAGAATAT+GGG | + | chr4_4:51100102-51100121 | Msa0686590:CDS | 20.0% |
| !! | TAGTCAGATTTATTATGTAA+TGG | + | chr4_4:51100340-51100359 | Msa0686590:intron | 20.0% |
| !!! | AGTATGAATTCATTTTTTGA+TGG | + | chr4_4:51100967-51100986 | Msa0686590:CDS | 20.0% |
| !!! | GTATGAATTCATTTTTTGAT+GGG | + | chr4_4:51100968-51100987 | Msa0686590:CDS | 20.0% |
| !! | ATTGAAAGATAAGATTGAAA+AGG | + | chr4_4:51101044-51101063 | Msa0686590:CDS | 20.0% |
| !!! | AATAGAAACTTTTGTTTAAG+AGG | - | chr4_4:51099504-51099523 | None:intergenic | 20.0% |
| !! | ATTTACAAGTAAGTATTTGT+CGG | + | chr4_4:51099549-51099568 | Msa0686590:intron | 20.0% |
| !! | TTTGACTATGATTAATTGTT+TGG | + | chr4_4:51099626-51099645 | Msa0686590:intron | 20.0% |
| !! | AGTAAAATAAGTTCGAAAAA+TGG | + | chr4_4:51099871-51099890 | Msa0686590:CDS | 20.0% |
| !! | TTTAGATGTAACAAGAATAT+GGG | + | chr4_4:51100102-51100121 | Msa0686590:CDS | 20.0% |
| !! | TAGTCAGATTTATTATGTAA+TGG | + | chr4_4:51100340-51100359 | Msa0686590:intron | 20.0% |
| !!! | AGTATGAATTCATTTTTTGA+TGG | + | chr4_4:51100967-51100986 | Msa0686590:CDS | 20.0% |
| !!! | GTATGAATTCATTTTTTGAT+GGG | + | chr4_4:51100968-51100987 | Msa0686590:CDS | 20.0% |
| !! | ATTGAAAGATAAGATTGAAA+AGG | + | chr4_4:51101044-51101063 | Msa0686590:CDS | 20.0% |
| ! | TTCAAATATTGTTTGTGAAG+AGG | + | chr4_4:51099759-51099778 | Msa0686590:CDS | 25.0% |
| !! | TAAATGTCATTTCAGTACTA+GGG | - | chr4_4:51099789-51099808 | None:intergenic | 25.0% |
| ! | AGCATAATTCATGTAATACA+AGG | - | chr4_4:51099830-51099849 | None:intergenic | 25.0% |
| ! | TAGCATTAAAACACAATGTA+GGG | + | chr4_4:51099981-51100000 | Msa0686590:CDS | 25.0% |
| ! | CTTTAGATGTAACAAGAATA+TGG | + | chr4_4:51100101-51100120 | Msa0686590:CDS | 25.0% |
| ! | TTAGATGTAACAAGAATATG+GGG | + | chr4_4:51100103-51100122 | Msa0686590:CDS | 25.0% |
| !!! | GATTTATTATGTAATGGATG+TGG | + | chr4_4:51100346-51100365 | Msa0686590:intron | 25.0% |
| ! | CTTATGGCATTTAATGAAAA+AGG | + | chr4_4:51100705-51100724 | Msa0686590:CDS | 25.0% |
| !! | ATGATAATGAATGGTTGAAA+GGG | + | chr4_4:51100860-51100879 | Msa0686590:CDS | 25.0% |
| !!! | TTGCATTGGTAAATGATTTT+TGG | - | chr4_4:51101143-51101162 | None:intergenic | 25.0% |
| !! | AAATTCTCTGAATTTTGCAT+TGG | - | chr4_4:51101157-51101176 | None:intergenic | 25.0% |
| !!! | TGTATTGCAATACTTTTTGT+AGG | + | chr4_4:51101199-51101218 | Msa0686590:intron | 25.0% |
| ! | TTCAAATATTGTTTGTGAAG+AGG | + | chr4_4:51099759-51099778 | Msa0686590:CDS | 25.0% |
| !! | TAAATGTCATTTCAGTACTA+GGG | - | chr4_4:51099789-51099808 | None:intergenic | 25.0% |
| ! | AGCATAATTCATGTAATACA+AGG | - | chr4_4:51099830-51099849 | None:intergenic | 25.0% |
| ! | TAGCATTAAAACACAATGTA+GGG | + | chr4_4:51099981-51100000 | Msa0686590:CDS | 25.0% |
| ! | CTTTAGATGTAACAAGAATA+TGG | + | chr4_4:51100101-51100120 | Msa0686590:CDS | 25.0% |
| ! | TTAGATGTAACAAGAATATG+GGG | + | chr4_4:51100103-51100122 | Msa0686590:CDS | 25.0% |
| !!! | GATTTATTATGTAATGGATG+TGG | + | chr4_4:51100346-51100365 | Msa0686590:intron | 25.0% |
| ! | CTTATGGCATTTAATGAAAA+AGG | + | chr4_4:51100705-51100724 | Msa0686590:CDS | 25.0% |
| !! | ATGATAATGAATGGTTGAAA+GGG | + | chr4_4:51100860-51100879 | Msa0686590:CDS | 25.0% |
| !!! | TTGCATTGGTAAATGATTTT+TGG | - | chr4_4:51101143-51101162 | None:intergenic | 25.0% |
| !! | AAATTCTCTGAATTTTGCAT+TGG | - | chr4_4:51101157-51101176 | None:intergenic | 25.0% |
| !!! | TGTATTGCAATACTTTTTGT+AGG | + | chr4_4:51101199-51101218 | Msa0686590:intron | 25.0% |
| TTTGTTTAAGAGGTAGATAG+TGG | - | chr4_4:51099494-51099513 | None:intergenic | 30.0% | |
| GCTTTACATTCATTTGCAAT+TGG | + | chr4_4:51099526-51099545 | Msa0686590:CDS | 30.0% | |
| CTGATATTCAACTAATTGTC+TGG | + | chr4_4:51099595-51099614 | Msa0686590:intron | 30.0% | |
| TCTTTCACTAGATGATGATT+TGG | - | chr4_4:51099701-51099720 | None:intergenic | 30.0% | |
| TCTAGTGAAAGAGAAAATGA+AGG | + | chr4_4:51099709-51099728 | Msa0686590:CDS | 30.0% | |
| ! | AAATGTCATTTCAGTACTAG+GGG | - | chr4_4:51099788-51099807 | None:intergenic | 30.0% |
| ! | CTAAATGTCATTTCAGTACT+AGG | - | chr4_4:51099790-51099809 | None:intergenic | 30.0% |
| TACTGAAATGACATTTAGCT+CGG | + | chr4_4:51099792-51099811 | Msa0686590:CDS | 30.0% | |
| !!! | TGTGTTTTAATGCTAGCATT+TGG | - | chr4_4:51099976-51099995 | None:intergenic | 30.0% |
| CTAGCATTAAAACACAATGT+AGG | + | chr4_4:51099980-51099999 | Msa0686590:CDS | 30.0% | |
| ACTGAATGCATGTATATGTT+TGG | + | chr4_4:51100008-51100027 | Msa0686590:CDS | 30.0% | |
| AATGCATGTATATGTTTGGA+TGG | + | chr4_4:51100012-51100031 | Msa0686590:CDS | 30.0% | |
| TTAGAGATTAATGATCAAGC+TGG | + | chr4_4:51100144-51100163 | Msa0686590:CDS | 30.0% | |
| ! | CAGTAGAAATTTTAGATCCA+TGG | + | chr4_4:51100176-51100195 | Msa0686590:CDS | 30.0% |
| CTGTAGAAACTATATAGACA+AGG | + | chr4_4:51100245-51100264 | Msa0686590:CDS | 30.0% | |
| CCCAGAATACATTTCTTAAA+CGG | - | chr4_4:51100382-51100401 | None:intergenic | 30.0% | |
| CCGTTTAAGAAATGTATTCT+GGG | + | chr4_4:51100379-51100398 | Msa0686590:intron | 30.0% | |
| TGATGATTTACTCCAACAAA+AGG | - | chr4_4:51100499-51100518 | None:intergenic | 30.0% | |
| TTTGTTGGAGTAAATCATCA+CGG | + | chr4_4:51100499-51100518 | Msa0686590:CDS | 30.0% | |
| TGATCAGTAATAATGGCATT+TGG | - | chr4_4:51100625-51100644 | None:intergenic | 30.0% | |
| AAATGCCATTATTACTGATC+AGG | + | chr4_4:51100624-51100643 | Msa0686590:CDS | 30.0% | |
| CTTATCCTGATCAGTAATAA+TGG | - | chr4_4:51100632-51100651 | None:intergenic | 30.0% | |
| CATTATTACTGATCAGGATA+AGG | + | chr4_4:51100630-51100649 | Msa0686590:CDS | 30.0% | |
| !! | AAAAAGGTACCTGAAAAGTT+TGG | + | chr4_4:51100721-51100740 | Msa0686590:CDS | 30.0% |
| ! | GAGTATTTACCAAACTTTTC+AGG | - | chr4_4:51100733-51100752 | None:intergenic | 30.0% |
| ! | ATGAGCTACATGATAATGAA+TGG | + | chr4_4:51100851-51100870 | Msa0686590:CDS | 30.0% |
| ! | CATGATAATGAATGGTTGAA+AGG | + | chr4_4:51100859-51100878 | Msa0686590:CDS | 30.0% |
| ATAAGATTGAAAAGGAAAGC+AGG | + | chr4_4:51101052-51101071 | Msa0686590:CDS | 30.0% | |
| TAAGATTGAAAAGGAAAGCA+GGG | + | chr4_4:51101053-51101072 | Msa0686590:CDS | 30.0% | |
| ! | ATTGCTTGTGTAAGTCATTT+TGG | + | chr4_4:51101102-51101121 | Msa0686590:intron | 30.0% |
| TTTGTTTAAGAGGTAGATAG+TGG | - | chr4_4:51099494-51099513 | None:intergenic | 30.0% | |
| GCTTTACATTCATTTGCAAT+TGG | + | chr4_4:51099526-51099545 | Msa0686590:CDS | 30.0% | |
| CTGATATTCAACTAATTGTC+TGG | + | chr4_4:51099595-51099614 | Msa0686590:intron | 30.0% | |
| TCTTTCACTAGATGATGATT+TGG | - | chr4_4:51099701-51099720 | None:intergenic | 30.0% | |
| TCTAGTGAAAGAGAAAATGA+AGG | + | chr4_4:51099709-51099728 | Msa0686590:CDS | 30.0% | |
| ! | AAATGTCATTTCAGTACTAG+GGG | - | chr4_4:51099788-51099807 | None:intergenic | 30.0% |
| ! | CTAAATGTCATTTCAGTACT+AGG | - | chr4_4:51099790-51099809 | None:intergenic | 30.0% |
| TACTGAAATGACATTTAGCT+CGG | + | chr4_4:51099792-51099811 | Msa0686590:CDS | 30.0% | |
| !!! | TGTGTTTTAATGCTAGCATT+TGG | - | chr4_4:51099976-51099995 | None:intergenic | 30.0% |
| CTAGCATTAAAACACAATGT+AGG | + | chr4_4:51099980-51099999 | Msa0686590:CDS | 30.0% | |
| ACTGAATGCATGTATATGTT+TGG | + | chr4_4:51100008-51100027 | Msa0686590:CDS | 30.0% | |
| AATGCATGTATATGTTTGGA+TGG | + | chr4_4:51100012-51100031 | Msa0686590:CDS | 30.0% | |
| TTAGAGATTAATGATCAAGC+TGG | + | chr4_4:51100144-51100163 | Msa0686590:CDS | 30.0% | |
| ! | CAGTAGAAATTTTAGATCCA+TGG | + | chr4_4:51100176-51100195 | Msa0686590:CDS | 30.0% |
| CTGTAGAAACTATATAGACA+AGG | + | chr4_4:51100245-51100264 | Msa0686590:CDS | 30.0% | |
| CCCAGAATACATTTCTTAAA+CGG | - | chr4_4:51100382-51100401 | None:intergenic | 30.0% | |
| CCGTTTAAGAAATGTATTCT+GGG | + | chr4_4:51100379-51100398 | Msa0686590:intron | 30.0% | |
| TGATGATTTACTCCAACAAA+AGG | - | chr4_4:51100499-51100518 | None:intergenic | 30.0% | |
| TTTGTTGGAGTAAATCATCA+CGG | + | chr4_4:51100499-51100518 | Msa0686590:CDS | 30.0% | |
| TGATCAGTAATAATGGCATT+TGG | - | chr4_4:51100625-51100644 | None:intergenic | 30.0% | |
| AAATGCCATTATTACTGATC+AGG | + | chr4_4:51100624-51100643 | Msa0686590:CDS | 30.0% | |
| CTTATCCTGATCAGTAATAA+TGG | - | chr4_4:51100632-51100651 | None:intergenic | 30.0% | |
| CATTATTACTGATCAGGATA+AGG | + | chr4_4:51100630-51100649 | Msa0686590:CDS | 30.0% | |
| !! | AAAAAGGTACCTGAAAAGTT+TGG | + | chr4_4:51100721-51100740 | Msa0686590:CDS | 30.0% |
| ! | GAGTATTTACCAAACTTTTC+AGG | - | chr4_4:51100733-51100752 | None:intergenic | 30.0% |
| ! | ATGAGCTACATGATAATGAA+TGG | + | chr4_4:51100851-51100870 | Msa0686590:CDS | 30.0% |
| ! | CATGATAATGAATGGTTGAA+AGG | + | chr4_4:51100859-51100878 | Msa0686590:CDS | 30.0% |
| ATAAGATTGAAAAGGAAAGC+AGG | + | chr4_4:51101052-51101071 | Msa0686590:CDS | 30.0% | |
| TAAGATTGAAAAGGAAAGCA+GGG | + | chr4_4:51101053-51101072 | Msa0686590:CDS | 30.0% | |
| ! | ATTGCTTGTGTAAGTCATTT+TGG | + | chr4_4:51101102-51101121 | Msa0686590:intron | 30.0% |
| ATGAATTATGCTCGACGTAT+GGG | + | chr4_4:51099838-51099857 | Msa0686590:CDS | 35.0% | |
| AGTTCGAAAAATGGAGATGA+TGG | + | chr4_4:51099880-51099899 | Msa0686590:CDS | 35.0% | |
| GTTACTCTTGACCATAATCA+TGG | + | chr4_4:51100054-51100073 | Msa0686590:CDS | 35.0% | |
| ATATGGGGTCTCACATAAAA+AGG | + | chr4_4:51100118-51100137 | Msa0686590:CDS | 35.0% | |
| GAAACTATATAGACAAGGTC+AGG | + | chr4_4:51100250-51100269 | Msa0686590:CDS | 35.0% | |
| GCCGTTTAAGAAATGTATTC+TGG | + | chr4_4:51100378-51100397 | Msa0686590:intron | 35.0% | |
| ! | AGGATGCTGAAACTTTTACT+TGG | + | chr4_4:51100560-51100579 | Msa0686590:CDS | 35.0% |
| TTACTTGGTTATTCACCACA+TGG | + | chr4_4:51100575-51100594 | Msa0686590:CDS | 35.0% | |
| ATACATGCATTCTAACCATG+TGG | - | chr4_4:51100593-51100612 | None:intergenic | 35.0% | |
| ACATGGTTAGAATGCATGTA+TGG | + | chr4_4:51100592-51100611 | Msa0686590:CDS | 35.0% | |
| TCAGGATAAGGCAATGAAAA+AGG | + | chr4_4:51100642-51100661 | Msa0686590:CDS | 35.0% | |
| TATTTGATGAGCAACATCGT+TGG | + | chr4_4:51100884-51100903 | Msa0686590:CDS | 35.0% | |
| ATTTGATGAGCAACATCGTT+GGG | + | chr4_4:51100885-51100904 | Msa0686590:CDS | 35.0% | |
| ATGAATTATGCTCGACGTAT+GGG | + | chr4_4:51099838-51099857 | Msa0686590:CDS | 35.0% | |
| AGTTCGAAAAATGGAGATGA+TGG | + | chr4_4:51099880-51099899 | Msa0686590:CDS | 35.0% | |
| GTTACTCTTGACCATAATCA+TGG | + | chr4_4:51100054-51100073 | Msa0686590:CDS | 35.0% | |
| ATATGGGGTCTCACATAAAA+AGG | + | chr4_4:51100118-51100137 | Msa0686590:CDS | 35.0% | |
| GAAACTATATAGACAAGGTC+AGG | + | chr4_4:51100250-51100269 | Msa0686590:CDS | 35.0% | |
| GCCGTTTAAGAAATGTATTC+TGG | + | chr4_4:51100378-51100397 | Msa0686590:intron | 35.0% | |
| ! | AGGATGCTGAAACTTTTACT+TGG | + | chr4_4:51100560-51100579 | Msa0686590:CDS | 35.0% |
| TTACTTGGTTATTCACCACA+TGG | + | chr4_4:51100575-51100594 | Msa0686590:CDS | 35.0% | |
| ATACATGCATTCTAACCATG+TGG | - | chr4_4:51100593-51100612 | None:intergenic | 35.0% | |
| ACATGGTTAGAATGCATGTA+TGG | + | chr4_4:51100592-51100611 | Msa0686590:CDS | 35.0% | |
| TCAGGATAAGGCAATGAAAA+AGG | + | chr4_4:51100642-51100661 | Msa0686590:CDS | 35.0% | |
| TATTTGATGAGCAACATCGT+TGG | + | chr4_4:51100884-51100903 | Msa0686590:CDS | 35.0% | |
| ATTTGATGAGCAACATCGTT+GGG | + | chr4_4:51100885-51100904 | Msa0686590:CDS | 35.0% | |
| ! | AATGACATTTAGCTCGGAAG+CGG | + | chr4_4:51099798-51099817 | Msa0686590:CDS | 40.0% |
| CATGAATTATGCTCGACGTA+TGG | + | chr4_4:51099837-51099856 | Msa0686590:CDS | 40.0% | |
| !! | TAAAGTACCGTGCCTTGTTT+GGG | - | chr4_4:51100086-51100105 | None:intergenic | 40.0% |
| TCCATGGTTGTTGAAGCAAA+TGG | + | chr4_4:51100192-51100211 | Msa0686590:CDS | 40.0% | |
| CCATGGTTGTTGAAGCAAAT+GGG | + | chr4_4:51100193-51100212 | Msa0686590:CDS | 40.0% | |
| GGGTATGAGAATCTCACATT+TGG | + | chr4_4:51100213-51100232 | Msa0686590:CDS | 40.0% | |
| ACTATATAGACAAGGTCAGG+CGG | + | chr4_4:51100253-51100272 | Msa0686590:CDS | 40.0% | |
| AGGGCTGCATATGAATACTT+TGG | + | chr4_4:51100415-51100434 | Msa0686590:CDS | 40.0% | |
| ! | ATGCCTTTTGCTCCTTTTGT+TGG | + | chr4_4:51100484-51100503 | Msa0686590:CDS | 40.0% |
| ACTCCAACAAAAGGAGCAAA+AGG | - | chr4_4:51100490-51100509 | None:intergenic | 40.0% | |
| TTGTGCACTCTTATCACATG+AGG | + | chr4_4:51100540-51100559 | Msa0686590:CDS | 40.0% | |
| AATGCCATAAGCACCATCTA+TGG | - | chr4_4:51100696-51100715 | None:intergenic | 40.0% | |
| ! | AATGACATTTAGCTCGGAAG+CGG | + | chr4_4:51099798-51099817 | Msa0686590:CDS | 40.0% |
| CATGAATTATGCTCGACGTA+TGG | + | chr4_4:51099837-51099856 | Msa0686590:CDS | 40.0% | |
| !! | TAAAGTACCGTGCCTTGTTT+GGG | - | chr4_4:51100086-51100105 | None:intergenic | 40.0% |
| TCCATGGTTGTTGAAGCAAA+TGG | + | chr4_4:51100192-51100211 | Msa0686590:CDS | 40.0% | |
| CCATGGTTGTTGAAGCAAAT+GGG | + | chr4_4:51100193-51100212 | Msa0686590:CDS | 40.0% | |
| GGGTATGAGAATCTCACATT+TGG | + | chr4_4:51100213-51100232 | Msa0686590:CDS | 40.0% | |
| ACTATATAGACAAGGTCAGG+CGG | + | chr4_4:51100253-51100272 | Msa0686590:CDS | 40.0% | |
| AGGGCTGCATATGAATACTT+TGG | + | chr4_4:51100415-51100434 | Msa0686590:CDS | 40.0% | |
| ! | ATGCCTTTTGCTCCTTTTGT+TGG | + | chr4_4:51100484-51100503 | Msa0686590:CDS | 40.0% |
| ACTCCAACAAAAGGAGCAAA+AGG | - | chr4_4:51100490-51100509 | None:intergenic | 40.0% | |
| TTGTGCACTCTTATCACATG+AGG | + | chr4_4:51100540-51100559 | Msa0686590:CDS | 40.0% | |
| AATGCCATAAGCACCATCTA+TGG | - | chr4_4:51100696-51100715 | None:intergenic | 40.0% | |
| TATGCTCGACGTATGGGTTT+CGG | + | chr4_4:51099844-51099863 | Msa0686590:CDS | 45.0% | |
| TTGGGCTAAGGCCATGATTA+TGG | - | chr4_4:51100068-51100087 | None:intergenic | 45.0% | |
| !! | CTAAAGTACCGTGCCTTGTT+TGG | - | chr4_4:51100087-51100106 | None:intergenic | 45.0% |
| CCCATTTGCTTCAACAACCA+TGG | - | chr4_4:51100196-51100215 | None:intergenic | 45.0% | |
| TTCTGGGCAGATCAAGATGT+AGG | + | chr4_4:51100395-51100414 | Msa0686590:intron | 45.0% | |
| TCTGGGCAGATCAAGATGTA+GGG | + | chr4_4:51100396-51100415 | Msa0686590:intron | 45.0% | |
| TCACGGTCAATCTGTGTTGT+TGG | + | chr4_4:51100516-51100535 | Msa0686590:CDS | 45.0% | |
| ! | CACGGTCAATCTGTGTTGTT+GGG | + | chr4_4:51100517-51100536 | Msa0686590:CDS | 45.0% |
| GGCAATGAAAAAGGCGATTG+AGG | + | chr4_4:51100651-51100670 | Msa0686590:CDS | 45.0% | |
| GCAAAAGCGATTTCGTAGAG+AGG | + | chr4_4:51100806-51100825 | Msa0686590:CDS | 45.0% | |
| AAAGCGATTTCGTAGAGAGG+TGG | + | chr4_4:51100809-51100828 | Msa0686590:CDS | 45.0% | |
| TTGGGTTCCTGTGTATGTGA+GGG | + | chr4_4:51100903-51100922 | Msa0686590:CDS | 45.0% | |
| ! | TGTATGTGAGGGACGTGTTT+TGG | + | chr4_4:51100914-51100933 | Msa0686590:CDS | 45.0% |
| ! | GTATGTGAGGGACGTGTTTT+GGG | + | chr4_4:51100915-51100934 | Msa0686590:CDS | 45.0% |
| !! | AAGGAAAGCAGGGCTGATTT+TGG | + | chr4_4:51101063-51101082 | Msa0686590:CDS | 45.0% |
| TATGCTCGACGTATGGGTTT+CGG | + | chr4_4:51099844-51099863 | Msa0686590:CDS | 45.0% | |
| TTGGGCTAAGGCCATGATTA+TGG | - | chr4_4:51100068-51100087 | None:intergenic | 45.0% | |
| !! | CTAAAGTACCGTGCCTTGTT+TGG | - | chr4_4:51100087-51100106 | None:intergenic | 45.0% |
| CCCATTTGCTTCAACAACCA+TGG | - | chr4_4:51100196-51100215 | None:intergenic | 45.0% | |
| TTCTGGGCAGATCAAGATGT+AGG | + | chr4_4:51100395-51100414 | Msa0686590:intron | 45.0% | |
| TCTGGGCAGATCAAGATGTA+GGG | + | chr4_4:51100396-51100415 | Msa0686590:intron | 45.0% | |
| TCACGGTCAATCTGTGTTGT+TGG | + | chr4_4:51100516-51100535 | Msa0686590:CDS | 45.0% | |
| ! | CACGGTCAATCTGTGTTGTT+GGG | + | chr4_4:51100517-51100536 | Msa0686590:CDS | 45.0% |
| GGCAATGAAAAAGGCGATTG+AGG | + | chr4_4:51100651-51100670 | Msa0686590:CDS | 45.0% | |
| GCAAAAGCGATTTCGTAGAG+AGG | + | chr4_4:51100806-51100825 | Msa0686590:CDS | 45.0% | |
| AAAGCGATTTCGTAGAGAGG+TGG | + | chr4_4:51100809-51100828 | Msa0686590:CDS | 45.0% | |
| TTGGGTTCCTGTGTATGTGA+GGG | + | chr4_4:51100903-51100922 | Msa0686590:CDS | 45.0% | |
| ! | TGTATGTGAGGGACGTGTTT+TGG | + | chr4_4:51100914-51100933 | Msa0686590:CDS | 45.0% |
| ! | GTATGTGAGGGACGTGTTTT+GGG | + | chr4_4:51100915-51100934 | Msa0686590:CDS | 45.0% |
| !! | AAGGAAAGCAGGGCTGATTT+TGG | + | chr4_4:51101063-51101082 | Msa0686590:CDS | 45.0% |
| ! | TCATGGCCTTAGCCCAAACA+AGG | + | chr4_4:51100071-51100090 | Msa0686590:CDS | 50.0% |
| !!! | ACCATCTATGGCGGGCTTTT+GGG | - | chr4_4:51100684-51100703 | None:intergenic | 50.0% |
| CCATAAGCACCATCTATGGC+GGG | - | chr4_4:51100692-51100711 | None:intergenic | 50.0% | |
| GCCATAAGCACCATCTATGG+CGG | - | chr4_4:51100693-51100712 | None:intergenic | 50.0% | |
| GTTGGGTTCCTGTGTATGTG+AGG | + | chr4_4:51100902-51100921 | Msa0686590:CDS | 50.0% | |
| AACACGTCCCTCACATACAC+AGG | - | chr4_4:51100913-51100932 | None:intergenic | 50.0% | |
| TCGCTGTGTAGTTGACATCC+CGG | - | chr4_4:51100941-51100960 | None:intergenic | 50.0% | |
| ! | TCATGGCCTTAGCCCAAACA+AGG | + | chr4_4:51100071-51100090 | Msa0686590:CDS | 50.0% |
| !!! | ACCATCTATGGCGGGCTTTT+GGG | - | chr4_4:51100684-51100703 | None:intergenic | 50.0% |
| CCATAAGCACCATCTATGGC+GGG | - | chr4_4:51100692-51100711 | None:intergenic | 50.0% | |
| GCCATAAGCACCATCTATGG+CGG | - | chr4_4:51100693-51100712 | None:intergenic | 50.0% | |
| GTTGGGTTCCTGTGTATGTG+AGG | + | chr4_4:51100902-51100921 | Msa0686590:CDS | 50.0% | |
| AACACGTCCCTCACATACAC+AGG | - | chr4_4:51100913-51100932 | None:intergenic | 50.0% | |
| TCGCTGTGTAGTTGACATCC+CGG | - | chr4_4:51100941-51100960 | None:intergenic | 50.0% | |
| GCCTTAGCCCAAACAAGGCA+CGG | + | chr4_4:51100076-51100095 | Msa0686590:CDS | 55.0% | |
| !! | ACCGTGCCTTGTTTGGGCTA+AGG | - | chr4_4:51100080-51100099 | None:intergenic | 55.0% |
| TAGACAAGGTCAGGCGGCTA+AGG | + | chr4_4:51100259-51100278 | Msa0686590:CDS | 55.0% | |
| TCCCAAAAGCCCGCCATAGA+TGG | + | chr4_4:51100680-51100699 | Msa0686590:CDS | 55.0% | |
| !!! | CACCATCTATGGCGGGCTTT+TGG | - | chr4_4:51100685-51100704 | None:intergenic | 55.0% |
| CCCGCCATAGATGGTGCTTA+TGG | + | chr4_4:51100689-51100708 | Msa0686590:CDS | 55.0% | |
| GCCTTAGCCCAAACAAGGCA+CGG | + | chr4_4:51100076-51100095 | Msa0686590:CDS | 55.0% | |
| !! | ACCGTGCCTTGTTTGGGCTA+AGG | - | chr4_4:51100080-51100099 | None:intergenic | 55.0% |
| TAGACAAGGTCAGGCGGCTA+AGG | + | chr4_4:51100259-51100278 | Msa0686590:CDS | 55.0% | |
| TCCCAAAAGCCCGCCATAGA+TGG | + | chr4_4:51100680-51100699 | Msa0686590:CDS | 55.0% | |
| !!! | CACCATCTATGGCGGGCTTT+TGG | - | chr4_4:51100685-51100704 | None:intergenic | 55.0% |
| CCCGCCATAGATGGTGCTTA+TGG | + | chr4_4:51100689-51100708 | Msa0686590:CDS | 55.0% | |
| AAGGTCAGGCGGCTAAGGCT+TGG | + | chr4_4:51100264-51100283 | Msa0686590:CDS | 60.0% | |
| AGGTCAGGCGGCTAAGGCTT+GGG | + | chr4_4:51100265-51100284 | Msa0686590:CDS | 60.0% | |
| !! | GTGAGGGACGTGTTTTGGGC+CGG | + | chr4_4:51100919-51100938 | Msa0686590:CDS | 60.0% |
| !! | TGAGGGACGTGTTTTGGGCC+GGG | + | chr4_4:51100920-51100939 | Msa0686590:CDS | 60.0% |
| AAGGTCAGGCGGCTAAGGCT+TGG | + | chr4_4:51100264-51100283 | Msa0686590:CDS | 60.0% | |
| AGGTCAGGCGGCTAAGGCTT+GGG | + | chr4_4:51100265-51100284 | Msa0686590:CDS | 60.0% | |
| !! | GTGAGGGACGTGTTTTGGGC+CGG | + | chr4_4:51100919-51100938 | Msa0686590:CDS | 60.0% |
| !! | TGAGGGACGTGTTTTGGGCC+GGG | + | chr4_4:51100920-51100939 | Msa0686590:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 51099475 | 51101271 | 51099475 | ID=Msa0686590;Name=Msa0686590 |
| chr4_4 | mRNA | 51099475 | 51101271 | 51099475 | ID=Msa0686590-mRNA-1;Parent=Msa0686590;Name=Msa0686590-mRNA-1;_AED=0.25;_eAED=0.31;_QI=0|0|0|0.5|1|1|4|0|490 |
| chr4_4 | exon | 51099475 | 51099556 | 51099475 | ID=Msa0686590-mRNA-1:exon:13143;Parent=Msa0686590-mRNA-1 |
| chr4_4 | exon | 51099686 | 51100319 | 51099686 | ID=Msa0686590-mRNA-1:exon:13144;Parent=Msa0686590-mRNA-1 |
| chr4_4 | exon | 51100405 | 51101110 | 51100405 | ID=Msa0686590-mRNA-1:exon:13145;Parent=Msa0686590-mRNA-1 |
| chr4_4 | exon | 51101221 | 51101271 | 51101221 | ID=Msa0686590-mRNA-1:exon:13146;Parent=Msa0686590-mRNA-1 |
| chr4_4 | CDS | 51099475 | 51099556 | 51099475 | ID=Msa0686590-mRNA-1:cds;Parent=Msa0686590-mRNA-1 |
| chr4_4 | CDS | 51099686 | 51100319 | 51099686 | ID=Msa0686590-mRNA-1:cds;Parent=Msa0686590-mRNA-1 |
| chr4_4 | CDS | 51100405 | 51101110 | 51100405 | ID=Msa0686590-mRNA-1:cds;Parent=Msa0686590-mRNA-1 |
| chr4_4 | CDS | 51101221 | 51101271 | 51101221 | ID=Msa0686590-mRNA-1:cds;Parent=Msa0686590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
