Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687800 | XP_013456557.1 | 98.295 | 176 | 3 | 0 | 1 | 176 | 1 | 176 | 5.55e-126 | 365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687800 | sp|Q9LT23|BH121_ARATH | 70.621 | 177 | 46 | 3 | 6 | 176 | 58 | 234 | 6.12e-77 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687800 | A0A072UNE9 | 98.295 | 176 | 3 | 0 | 1 | 176 | 1 | 176 | 2.65e-126 | 365 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0687800 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687800 | MtrunA17_Chr4g0038511 | 98.295 | 176 | 3 | 0 | 1 | 176 | 1 | 176 | 5.10e-130 | 365 |
| Msa0687800 | MtrunA17_Chr1g0161461 | 63.314 | 169 | 56 | 2 | 6 | 168 | 77 | 245 | 5.84e-74 | 226 |
| Msa0687800 | MtrunA17_Chr4g0042041 | 44.361 | 133 | 57 | 3 | 6 | 137 | 76 | 192 | 1.21e-25 | 98.6 |
| Msa0687800 | MtrunA17_Chr2g0319301 | 41.958 | 143 | 74 | 3 | 6 | 147 | 69 | 203 | 2.01e-24 | 95.1 |
| Msa0687800 | MtrunA17_Chr4g0060591 | 43.810 | 105 | 59 | 0 | 7 | 111 | 29 | 133 | 5.39e-22 | 88.6 |
| Msa0687800 | MtrunA17_Chr2g0323031 | 44.330 | 97 | 53 | 1 | 9 | 104 | 108 | 204 | 3.24e-19 | 82.0 |
| Msa0687800 | MtrunA17_Chr1g0167821 | 40.714 | 140 | 70 | 4 | 11 | 144 | 95 | 227 | 5.86e-19 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687800 | AT3G19860.1 | 70.621 | 177 | 46 | 3 | 6 | 176 | 5 | 181 | 9.28e-79 | 236 |
| Msa0687800 | AT3G19860.3 | 70.621 | 177 | 46 | 3 | 6 | 176 | 36 | 212 | 2.50e-78 | 236 |
| Msa0687800 | AT3G19860.2 | 70.621 | 177 | 46 | 3 | 6 | 176 | 58 | 234 | 6.22e-78 | 236 |
| Msa0687800 | AT4G36060.2 | 55.634 | 142 | 52 | 2 | 9 | 149 | 29 | 160 | 3.12e-48 | 157 |
| Msa0687800 | AT4G36060.4 | 55.634 | 142 | 52 | 2 | 9 | 149 | 29 | 160 | 3.24e-48 | 157 |
| Msa0687800 | AT4G36060.1 | 55.634 | 142 | 52 | 2 | 9 | 149 | 47 | 178 | 1.20e-47 | 157 |
| Msa0687800 | AT4G36060.3 | 55.634 | 142 | 52 | 2 | 9 | 149 | 47 | 178 | 1.34e-47 | 156 |
| Msa0687800 | AT5G54680.1 | 37.500 | 160 | 72 | 4 | 9 | 167 | 74 | 206 | 1.26e-22 | 90.9 |
| Msa0687800 | AT1G51070.1 | 44.681 | 94 | 51 | 1 | 11 | 103 | 71 | 164 | 1.11e-18 | 80.1 |
| Msa0687800 | AT4G14410.2 | 40.152 | 132 | 64 | 4 | 11 | 132 | 129 | 255 | 1.70e-18 | 80.9 |
| Msa0687800 | AT4G14410.3 | 40.152 | 132 | 64 | 4 | 11 | 132 | 129 | 255 | 1.70e-18 | 80.9 |
| Msa0687800 | AT1G51070.2 | 44.681 | 94 | 51 | 1 | 11 | 103 | 137 | 230 | 1.95e-18 | 80.9 |
| Msa0687800 | AT4G14410.1 | 40.152 | 132 | 64 | 4 | 11 | 132 | 135 | 261 | 2.23e-18 | 80.5 |
| Msa0687800 | AT3G23210.2 | 35.606 | 132 | 77 | 2 | 11 | 134 | 138 | 269 | 3.66e-18 | 80.1 |
| Msa0687800 | AT3G23210.1 | 35.606 | 132 | 77 | 2 | 11 | 134 | 167 | 298 | 6.28e-18 | 79.7 |
| Msa0687800 | AT3G47640.1 | 37.113 | 97 | 61 | 0 | 7 | 103 | 28 | 124 | 2.47e-16 | 74.3 |
| Msa0687800 | AT3G47640.3 | 37.113 | 97 | 61 | 0 | 7 | 103 | 28 | 124 | 2.47e-16 | 74.3 |
| Msa0687800 | AT3G47640.2 | 37.113 | 97 | 61 | 0 | 7 | 103 | 28 | 124 | 2.47e-16 | 74.3 |
Find 52 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGATAAAGCGACCATTCT+AGG | 0.234923 | 4_4:-52788333 | Msa0687800:CDS |
| AATTGTATTCGGAGCTAAAA+AGG | 0.247255 | 4_4:+52787871 | None:intergenic |
| TCCTTAGTTGCAGCTGATAC+TGG | 0.331417 | 4_4:+52788062 | None:intergenic |
| TGTTGTTCAACAATTGTATT+CGG | 0.342434 | 4_4:+52787860 | None:intergenic |
| ACCAGTATCAGCTGCAACTA+AGG | 0.363603 | 4_4:-52788063 | Msa0687800:CDS |
| TAGTGGAAGAGTTGTCGTTT+TGG | 0.365267 | 4_4:+52789434 | None:intergenic |
| TAGCAGGTGTAATTTCCATT+GGG | 0.369888 | 4_4:+52788703 | None:intergenic |
| AACAAGAACAAGAATAAGAT+TGG | 0.370287 | 4_4:-52789355 | Msa0687800:five_prime_UTR |
| ACATATGTTGAACAAGGGTT+AGG | 0.393166 | 4_4:+52787896 | None:intergenic |
| AGGATGTTGATTAGCATAGT+AGG | 0.395188 | 4_4:+52787928 | None:intergenic |
| GCAGGTACCGGCATTGGAAC+TGG | 0.401184 | 4_4:+52787977 | None:intergenic |
| CTAGCAGGTGTAATTTCCAT+TGG | 0.415608 | 4_4:+52788702 | None:intergenic |
| GTTTACTAACTTGAGAAGTA+AGG | 0.433635 | 4_4:+52788286 | None:intergenic |
| TCTGAAATGCAGATCCTGAT+AGG | 0.437152 | 4_4:-52788362 | Msa0687800:intron |
| GTTCAATTTCCAGTTGTCTC+AGG | 0.452373 | 4_4:-52788146 | Msa0687800:intron |
| ATAACGGAATGATCCATTGC+AGG | 0.461908 | 4_4:+52788025 | None:intergenic |
| AAATGATCTCAGAGAAGAAA+AGG | 0.463510 | 4_4:-52788119 | Msa0687800:CDS |
| GAACCAGCAGGTACCGGCAT+TGG | 0.486966 | 4_4:+52787971 | None:intergenic |
| AGGCTGACCGAGAAAAGTTA+AGG | 0.489877 | 4_4:-52788668 | Msa0687800:CDS |
| GTTCCAATGCCGGTACCTGC+TGG | 0.492349 | 4_4:-52787974 | Msa0687800:CDS |
| GGATGTTGATTAGCATAGTA+GGG | 0.493252 | 4_4:+52787929 | None:intergenic |
| GGTGAAAAGTGAAAGGATAG+TGG | 0.493351 | 4_4:+52789417 | None:intergenic |
| CATATGTTGAACAAGGGTTA+GGG | 0.508234 | 4_4:+52787897 | None:intergenic |
| ACCGGCATTGGAACTGGATA+CGG | 0.508537 | 4_4:+52787983 | None:intergenic |
| ACAAGAACAAGAATAAGATT+GGG | 0.509441 | 4_4:-52789354 | Msa0687800:five_prime_UTR |
| TCCGTATCCAGTTCCAATGC+CGG | 0.524495 | 4_4:-52787984 | Msa0687800:CDS |
| GAATGATCCATTGCAGGCCA+TGG | 0.527462 | 4_4:+52788031 | None:intergenic |
| TTGAACTGTATCTCCTAGAA+TGG | 0.541064 | 4_4:+52788320 | None:intergenic |
| AATGGATCATTCCGTTATGA+TGG | 0.543467 | 4_4:-52788020 | Msa0687800:CDS |
| GGAATTGAACCAGCAGGTAC+CGG | 0.545624 | 4_4:+52787965 | None:intergenic |
| ACCTGCTAGAAAGACACAAA+AGG | 0.554651 | 4_4:-52788688 | Msa0687800:CDS |
| TATGTATCCATGGCCTGCAA+TGG | 0.558315 | 4_4:-52788038 | Msa0687800:CDS |
| TAGTAGGGGTACGGCTGCAT+GGG | 0.560037 | 4_4:+52787944 | None:intergenic |
| AGCAGGTGTAATTTCCATTG+GGG | 0.561289 | 4_4:+52788704 | None:intergenic |
| ATAGTAGGGGTACGGCTGCA+TGG | 0.562866 | 4_4:+52787943 | None:intergenic |
| AACTAAGGACTATGTATCCA+TGG | 0.564461 | 4_4:-52788048 | Msa0687800:CDS |
| GCATCAACCATAGATAGATA+AGG | 0.576735 | 4_4:-52789308 | Msa0687800:intron |
| GGTCTGAAGTTGAACCCCAA+TGG | 0.587215 | 4_4:-52788718 | Msa0687800:exon |
| TGATTAGCATAGTAGGGGTA+CGG | 0.592321 | 4_4:+52787935 | None:intergenic |
| AAGGGAACATATGTTGAACA+AGG | 0.603401 | 4_4:+52787890 | None:intergenic |
| GGAACTGGATACGGATATGT+TGG | 0.606135 | 4_4:+52787992 | None:intergenic |
| AGATACAGTTCAATTGCTGA+AGG | 0.616836 | 4_4:-52788310 | Msa0687800:CDS |
| TGTTGGTGGAGCCATCATAA+CGG | 0.621484 | 4_4:+52788009 | None:intergenic |
| CAAGGGTTAGGGATGACTGC+AGG | 0.622814 | 4_4:+52787908 | None:intergenic |
| CTGACCGAGAAAAGTTAAGG+AGG | 0.634700 | 4_4:-52788665 | Msa0687800:CDS |
| TGCATGGGAATTGAACCAGC+AGG | 0.642923 | 4_4:+52787959 | None:intergenic |
| GGATCACAGCAAGCAAACGA+CGG | 0.646485 | 4_4:+52789455 | None:intergenic |
| TGACCGAGAAAAGTTAAGGA+GGG | 0.651662 | 4_4:-52788664 | Msa0687800:CDS |
| GCTAAATGAAGAATCTCGTG+AGG | 0.654605 | 4_4:-52788244 | Msa0687800:intron |
| ACTGGATACGGATATGTTGG+TGG | 0.657323 | 4_4:+52787995 | None:intergenic |
| GATGTTGATTAGCATAGTAG+GGG | 0.671724 | 4_4:+52787930 | None:intergenic |
| AGGGAACATATGTTGAACAA+GGG | 0.680887 | 4_4:+52787891 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAATTATTTTGTGTTTT+TGG | - | chr4_4:52788592-52788611 | Msa0687800:intron | 10.0% |
| !!! | ATTTAATTATTTTGTGTTTT+TGG | - | chr4_4:52788592-52788611 | Msa0687800:intron | 10.0% |
| !!! | AAAAAGCTCAAATTTTTAAA+AGG | + | chr4_4:52788180-52788199 | None:intergenic | 15.0% |
| !!! | TATAAATTGATTCAAATCAA+TGG | - | chr4_4:52788346-52788365 | Msa0687800:CDS | 15.0% |
| !!! | AAAAAGCTCAAATTTTTAAA+AGG | + | chr4_4:52788180-52788199 | None:intergenic | 15.0% |
| !!! | TATAAATTGATTCAAATCAA+TGG | - | chr4_4:52788346-52788365 | Msa0687800:CDS | 15.0% |
| !!! | TGAATTGTAATTGTGTTTTT+CGG | + | chr4_4:52787969-52787988 | None:intergenic | 20.0% |
| !!! | ATCTTCTTCAATTTCAATTT+TGG | - | chr4_4:52788074-52788093 | Msa0687800:CDS | 20.0% |
| !! | TGTCAATTAAACAATAAAGA+TGG | + | chr4_4:52788142-52788161 | None:intergenic | 20.0% |
| !! | TCTTTATTGTTTAATTGACA+TGG | - | chr4_4:52788142-52788161 | Msa0687800:intron | 20.0% |
| !! | CTTTATTGTTTAATTGACAT+GGG | - | chr4_4:52788143-52788162 | Msa0687800:intron | 20.0% |
| !! | CATTGAATCAAAGTAATTTA+GGG | + | chr4_4:52788224-52788243 | None:intergenic | 20.0% |
| !! | ACATTGAATCAAAGTAATTT+AGG | + | chr4_4:52788225-52788244 | None:intergenic | 20.0% |
| !! | ATTAGATTTCTTAGAAGTTA+GGG | - | chr4_4:52788408-52788427 | Msa0687800:intron | 20.0% |
| !!! | CTTTCTTTTTTTGATCATTT+TGG | - | chr4_4:52788530-52788549 | Msa0687800:intron | 20.0% |
| !!! | ATTTTGGTTGTTATTATTGA+AGG | - | chr4_4:52788546-52788565 | Msa0687800:intron | 20.0% |
| !!! | TGAATTGTAATTGTGTTTTT+CGG | + | chr4_4:52787969-52787988 | None:intergenic | 20.0% |
| !!! | ATCTTCTTCAATTTCAATTT+TGG | - | chr4_4:52788074-52788093 | Msa0687800:CDS | 20.0% |
| !! | TGTCAATTAAACAATAAAGA+TGG | + | chr4_4:52788142-52788161 | None:intergenic | 20.0% |
| !! | TCTTTATTGTTTAATTGACA+TGG | - | chr4_4:52788142-52788161 | Msa0687800:intron | 20.0% |
| !! | CTTTATTGTTTAATTGACAT+GGG | - | chr4_4:52788143-52788162 | Msa0687800:intron | 20.0% |
| !! | CATTGAATCAAAGTAATTTA+GGG | + | chr4_4:52788224-52788243 | None:intergenic | 20.0% |
| !! | ACATTGAATCAAAGTAATTT+AGG | + | chr4_4:52788225-52788244 | None:intergenic | 20.0% |
| !! | ATTAGATTTCTTAGAAGTTA+GGG | - | chr4_4:52788408-52788427 | Msa0687800:intron | 20.0% |
| !!! | CTTTCTTTTTTTGATCATTT+TGG | - | chr4_4:52788530-52788549 | Msa0687800:intron | 20.0% |
| !!! | ATTTTGGTTGTTATTATTGA+AGG | - | chr4_4:52788546-52788565 | Msa0687800:intron | 20.0% |
| !!! | TAATTGTGTTTTTCGGAAAA+AGG | + | chr4_4:52787962-52787981 | None:intergenic | 25.0% |
| ! | AACAAGAACAAGAATAAGAT+TGG | - | chr4_4:52788000-52788019 | Msa0687800:CDS | 25.0% |
| ! | ACAAGAACAAGAATAAGATT+GGG | - | chr4_4:52788001-52788020 | Msa0687800:CDS | 25.0% |
| !! | GATTTTACCTTATCTATCTA+TGG | + | chr4_4:52788057-52788076 | None:intergenic | 25.0% |
| !!! | ATGTACGAGTTTTGTATAAT+TGG | - | chr4_4:52788258-52788277 | Msa0687800:CDS | 25.0% |
| ! | ATAATTGGTTAATCCCAAAT+TGG | - | chr4_4:52788273-52788292 | Msa0687800:CDS | 25.0% |
| ! | AAACTCATACAATTCTCAAT+AGG | + | chr4_4:52788379-52788398 | None:intergenic | 25.0% |
| !! | CTAACTTCTAAGAAATCTAA+TGG | + | chr4_4:52788409-52788428 | None:intergenic | 25.0% |
| ! | CATTAGATTTCTTAGAAGTT+AGG | - | chr4_4:52788407-52788426 | Msa0687800:intron | 25.0% |
| ! | TTTATCAATGATTGTAACCT+TGG | + | chr4_4:52788857-52788876 | None:intergenic | 25.0% |
| ! | TGTTGTTCAACAATTGTATT+CGG | + | chr4_4:52789498-52789517 | None:intergenic | 25.0% |
| ! | TCTTGATTCTCAAATTTCAA+CGG | + | chr4_4:52787857-52787876 | None:intergenic | 25.0% |
| !!! | TAATTGTGTTTTTCGGAAAA+AGG | + | chr4_4:52787962-52787981 | None:intergenic | 25.0% |
| ! | AACAAGAACAAGAATAAGAT+TGG | - | chr4_4:52788000-52788019 | Msa0687800:CDS | 25.0% |
| ! | ACAAGAACAAGAATAAGATT+GGG | - | chr4_4:52788001-52788020 | Msa0687800:CDS | 25.0% |
| !! | GATTTTACCTTATCTATCTA+TGG | + | chr4_4:52788057-52788076 | None:intergenic | 25.0% |
| !!! | ATGTACGAGTTTTGTATAAT+TGG | - | chr4_4:52788258-52788277 | Msa0687800:CDS | 25.0% |
| ! | ATAATTGGTTAATCCCAAAT+TGG | - | chr4_4:52788273-52788292 | Msa0687800:CDS | 25.0% |
| ! | AAACTCATACAATTCTCAAT+AGG | + | chr4_4:52788379-52788398 | None:intergenic | 25.0% |
| !! | CTAACTTCTAAGAAATCTAA+TGG | + | chr4_4:52788409-52788428 | None:intergenic | 25.0% |
| ! | CATTAGATTTCTTAGAAGTT+AGG | - | chr4_4:52788407-52788426 | Msa0687800:intron | 25.0% |
| ! | TTTATCAATGATTGTAACCT+TGG | + | chr4_4:52788857-52788876 | None:intergenic | 25.0% |
| ! | TGTTGTTCAACAATTGTATT+CGG | + | chr4_4:52789498-52789517 | None:intergenic | 25.0% |
| ! | CTTAGAAGTTAGGGTATTAT+TGG | - | chr4_4:52788417-52788436 | Msa0687800:intron | 30.0% |
| !! | TTATTGGCTTCATAATGTGT+AGG | - | chr4_4:52788433-52788452 | Msa0687800:intron | 30.0% |
| ! | TTTTATGTGTTTACTGCGAA+AGG | - | chr4_4:52788616-52788635 | Msa0687800:intron | 30.0% |
| !!! | AATGAACAGTTTTTAGAGCT+GGG | - | chr4_4:52788722-52788741 | Msa0687800:intron | 30.0% |
| GAAACTTCACTTTCTAACAT+AGG | - | chr4_4:52788762-52788781 | Msa0687800:intron | 30.0% | |
| ! | TTTTCAATTACATGTTGCCA+AGG | - | chr4_4:52788837-52788856 | Msa0687800:intron | 30.0% |
| !! | TTATCATTTTTAGGCCTATC+AGG | + | chr4_4:52789010-52789029 | None:intergenic | 30.0% |
| !! | ATGGTCGCTTTATCATTTTT+AGG | + | chr4_4:52789019-52789038 | None:intergenic | 30.0% |
| GTTTACTAACTTGAGAAGTA+AGG | + | chr4_4:52789072-52789091 | None:intergenic | 30.0% | |
| ! | ATGAATTACCTTGATGCTTT+TGG | - | chr4_4:52789154-52789173 | Msa0687800:intron | 30.0% |
| ! | TGAATTACCTTGATGCTTTT+GGG | - | chr4_4:52789155-52789174 | Msa0687800:intron | 30.0% |
| ! | TTTGGGACATAAATTTACAG+AGG | - | chr4_4:52789172-52789191 | Msa0687800:intron | 30.0% |
| AAATGATCTCAGAGAAGAAA+AGG | - | chr4_4:52789236-52789255 | Msa0687800:intron | 30.0% | |
| ATTGTATTCGGAGCTAAAAA+GGG | + | chr4_4:52789486-52789505 | None:intergenic | 30.0% | |
| AATTGTATTCGGAGCTAAAA+AGG | + | chr4_4:52789487-52789506 | None:intergenic | 30.0% | |
| ! | CTTAGAAGTTAGGGTATTAT+TGG | - | chr4_4:52788417-52788436 | Msa0687800:intron | 30.0% |
| !! | TTATTGGCTTCATAATGTGT+AGG | - | chr4_4:52788433-52788452 | Msa0687800:intron | 30.0% |
| ! | TTTTATGTGTTTACTGCGAA+AGG | - | chr4_4:52788616-52788635 | Msa0687800:intron | 30.0% |
| !!! | AATGAACAGTTTTTAGAGCT+GGG | - | chr4_4:52788722-52788741 | Msa0687800:intron | 30.0% |
| GAAACTTCACTTTCTAACAT+AGG | - | chr4_4:52788762-52788781 | Msa0687800:intron | 30.0% | |
| ! | TTTTCAATTACATGTTGCCA+AGG | - | chr4_4:52788837-52788856 | Msa0687800:intron | 30.0% |
| !! | TTATCATTTTTAGGCCTATC+AGG | + | chr4_4:52789010-52789029 | None:intergenic | 30.0% |
| !! | ATGGTCGCTTTATCATTTTT+AGG | + | chr4_4:52789019-52789038 | None:intergenic | 30.0% |
| GTTTACTAACTTGAGAAGTA+AGG | + | chr4_4:52789072-52789091 | None:intergenic | 30.0% | |
| ! | ATGAATTACCTTGATGCTTT+TGG | - | chr4_4:52789154-52789173 | Msa0687800:intron | 30.0% |
| ! | TGAATTACCTTGATGCTTTT+GGG | - | chr4_4:52789155-52789174 | Msa0687800:intron | 30.0% |
| ! | TTTGGGACATAAATTTACAG+AGG | - | chr4_4:52789172-52789191 | Msa0687800:intron | 30.0% |
| AAATGATCTCAGAGAAGAAA+AGG | - | chr4_4:52789236-52789255 | Msa0687800:intron | 30.0% | |
| ATTGTATTCGGAGCTAAAAA+GGG | + | chr4_4:52789486-52789505 | None:intergenic | 30.0% | |
| AATTGTATTCGGAGCTAAAA+AGG | + | chr4_4:52789487-52789506 | None:intergenic | 30.0% | |
| GGAAAAAGGTGAAAAGTGAA+AGG | + | chr4_4:52787948-52787967 | None:intergenic | 35.0% | |
| GCATCAACCATAGATAGATA+AGG | - | chr4_4:52788047-52788066 | Msa0687800:CDS | 35.0% | |
| !! | AGGAACAAATTTTCAAGCAG+TGG | - | chr4_4:52788453-52788472 | Msa0687800:intron | 35.0% |
| !! | AATTTTCAAGCAGTGGCTTT+TGG | - | chr4_4:52788460-52788479 | Msa0687800:intron | 35.0% |
| TAGCAGGTGTAATTTCCATT+GGG | + | chr4_4:52788655-52788674 | None:intergenic | 35.0% | |
| !!! | CAATGAACAGTTTTTAGAGC+TGG | - | chr4_4:52788721-52788740 | Msa0687800:intron | 35.0% |
| ! | TTAGAGCTGGGTAACATTTT+AGG | - | chr4_4:52788734-52788753 | Msa0687800:intron | 35.0% |
| AAAGCACAGAGTAATTCAAG+AGG | + | chr4_4:52788965-52788984 | None:intergenic | 35.0% | |
| TTGAATTACTCTGTGCTTTG+TGG | - | chr4_4:52788966-52788985 | Msa0687800:intron | 35.0% | |
| AATGATAAAGCGACCATTCT+AGG | - | chr4_4:52789022-52789041 | Msa0687800:intron | 35.0% | |
| TTGAACTGTATCTCCTAGAA+TGG | + | chr4_4:52789038-52789057 | None:intergenic | 35.0% | |
| AGATACAGTTCAATTGCTGA+AGG | - | chr4_4:52789045-52789064 | Msa0687800:intron | 35.0% | |
| ! | CGTGAGGTAATATTTTCTCT+CGG | - | chr4_4:52789127-52789146 | Msa0687800:intron | 35.0% |
| !! | TTTATGTCCCAAAAGCATCA+AGG | + | chr4_4:52789165-52789184 | None:intergenic | 35.0% |
| AACTAAGGACTATGTATCCA+TGG | - | chr4_4:52789307-52789326 | Msa0687800:intron | 35.0% | |
| AATGGATCATTCCGTTATGA+TGG | - | chr4_4:52789335-52789354 | Msa0687800:five_prime_UTR | 35.0% | |
| ! | GATGTTGATTAGCATAGTAG+GGG | + | chr4_4:52789428-52789447 | None:intergenic | 35.0% |
| ! | GGATGTTGATTAGCATAGTA+GGG | + | chr4_4:52789429-52789448 | None:intergenic | 35.0% |
| ! | AGGATGTTGATTAGCATAGT+AGG | + | chr4_4:52789430-52789449 | None:intergenic | 35.0% |
| CATATGTTGAACAAGGGTTA+GGG | + | chr4_4:52789461-52789480 | None:intergenic | 35.0% | |
| ACATATGTTGAACAAGGGTT+AGG | + | chr4_4:52789462-52789481 | None:intergenic | 35.0% | |
| AGGGAACATATGTTGAACAA+GGG | + | chr4_4:52789467-52789486 | None:intergenic | 35.0% | |
| AAGGGAACATATGTTGAACA+AGG | + | chr4_4:52789468-52789487 | None:intergenic | 35.0% | |
| GGAAAAAGGTGAAAAGTGAA+AGG | + | chr4_4:52787948-52787967 | None:intergenic | 35.0% | |
| GCATCAACCATAGATAGATA+AGG | - | chr4_4:52788047-52788066 | Msa0687800:CDS | 35.0% | |
| !! | AGGAACAAATTTTCAAGCAG+TGG | - | chr4_4:52788453-52788472 | Msa0687800:intron | 35.0% |
| !! | AATTTTCAAGCAGTGGCTTT+TGG | - | chr4_4:52788460-52788479 | Msa0687800:intron | 35.0% |
| TAGCAGGTGTAATTTCCATT+GGG | + | chr4_4:52788655-52788674 | None:intergenic | 35.0% | |
| !!! | CAATGAACAGTTTTTAGAGC+TGG | - | chr4_4:52788721-52788740 | Msa0687800:intron | 35.0% |
| ! | TTAGAGCTGGGTAACATTTT+AGG | - | chr4_4:52788734-52788753 | Msa0687800:intron | 35.0% |
| AAAGCACAGAGTAATTCAAG+AGG | + | chr4_4:52788965-52788984 | None:intergenic | 35.0% | |
| TTGAATTACTCTGTGCTTTG+TGG | - | chr4_4:52788966-52788985 | Msa0687800:intron | 35.0% | |
| AATGATAAAGCGACCATTCT+AGG | - | chr4_4:52789022-52789041 | Msa0687800:intron | 35.0% | |
| TTGAACTGTATCTCCTAGAA+TGG | + | chr4_4:52789038-52789057 | None:intergenic | 35.0% | |
| AGATACAGTTCAATTGCTGA+AGG | - | chr4_4:52789045-52789064 | Msa0687800:intron | 35.0% | |
| ! | CGTGAGGTAATATTTTCTCT+CGG | - | chr4_4:52789127-52789146 | Msa0687800:intron | 35.0% |
| !! | TTTATGTCCCAAAAGCATCA+AGG | + | chr4_4:52789165-52789184 | None:intergenic | 35.0% |
| AACTAAGGACTATGTATCCA+TGG | - | chr4_4:52789307-52789326 | Msa0687800:intron | 35.0% | |
| AATGGATCATTCCGTTATGA+TGG | - | chr4_4:52789335-52789354 | Msa0687800:five_prime_UTR | 35.0% | |
| ! | GATGTTGATTAGCATAGTAG+GGG | + | chr4_4:52789428-52789447 | None:intergenic | 35.0% |
| ! | GGATGTTGATTAGCATAGTA+GGG | + | chr4_4:52789429-52789448 | None:intergenic | 35.0% |
| ! | AGGATGTTGATTAGCATAGT+AGG | + | chr4_4:52789430-52789449 | None:intergenic | 35.0% |
| CATATGTTGAACAAGGGTTA+GGG | + | chr4_4:52789461-52789480 | None:intergenic | 35.0% | |
| ACATATGTTGAACAAGGGTT+AGG | + | chr4_4:52789462-52789481 | None:intergenic | 35.0% | |
| AGGGAACATATGTTGAACAA+GGG | + | chr4_4:52789467-52789486 | None:intergenic | 35.0% | |
| AAGGGAACATATGTTGAACA+AGG | + | chr4_4:52789468-52789487 | None:intergenic | 35.0% | |
| !! | TAGTGGAAGAGTTGTCGTTT+TGG | + | chr4_4:52787924-52787943 | None:intergenic | 40.0% |
| GGTGAAAAGTGAAAGGATAG+TGG | + | chr4_4:52787941-52787960 | None:intergenic | 40.0% | |
| GAACTACACAGCACCAATTT+GGG | + | chr4_4:52788289-52788308 | None:intergenic | 40.0% | |
| TGAACTACACAGCACCAATT+TGG | + | chr4_4:52788290-52788309 | None:intergenic | 40.0% | |
| AGCAGGTGTAATTTCCATTG+GGG | + | chr4_4:52788654-52788673 | None:intergenic | 40.0% | |
| CTAGCAGGTGTAATTTCCAT+TGG | + | chr4_4:52788656-52788675 | None:intergenic | 40.0% | |
| ACCTGCTAGAAAGACACAAA+AGG | - | chr4_4:52788667-52788686 | Msa0687800:CDS | 40.0% | |
| TGACCGAGAAAAGTTAAGGA+GGG | - | chr4_4:52788691-52788710 | Msa0687800:CDS | 40.0% | |
| ! | GATCCCTCCTTAACTTTTCT+CGG | + | chr4_4:52788697-52788716 | None:intergenic | 40.0% |
| CAATAAGTGAGCAGAGTCAT+TGG | - | chr4_4:52788792-52788811 | Msa0687800:intron | 40.0% | |
| GCAACAAGCAATAACGTGTT+TGG | + | chr4_4:52788885-52788904 | None:intergenic | 40.0% | |
| ! | TCTGAAATGCAGATCCTGAT+AGG | - | chr4_4:52788993-52789012 | Msa0687800:intron | 40.0% |
| GCTAAATGAAGAATCTCGTG+AGG | - | chr4_4:52789111-52789130 | Msa0687800:intron | 40.0% | |
| GTTCAATTTCCAGTTGTCTC+AGG | - | chr4_4:52789209-52789228 | Msa0687800:intron | 40.0% | |
| ! | CATTTTTCTCCTGAGACAAC+TGG | + | chr4_4:52789221-52789240 | None:intergenic | 40.0% |
| ! | ATAACGGAATGATCCATTGC+AGG | + | chr4_4:52789333-52789352 | None:intergenic | 40.0% |
| TGATTAGCATAGTAGGGGTA+CGG | + | chr4_4:52789423-52789442 | None:intergenic | 40.0% | |
| !! | TAGTGGAAGAGTTGTCGTTT+TGG | + | chr4_4:52787924-52787943 | None:intergenic | 40.0% |
| GGTGAAAAGTGAAAGGATAG+TGG | + | chr4_4:52787941-52787960 | None:intergenic | 40.0% | |
| GAACTACACAGCACCAATTT+GGG | + | chr4_4:52788289-52788308 | None:intergenic | 40.0% | |
| TGAACTACACAGCACCAATT+TGG | + | chr4_4:52788290-52788309 | None:intergenic | 40.0% | |
| AGCAGGTGTAATTTCCATTG+GGG | + | chr4_4:52788654-52788673 | None:intergenic | 40.0% | |
| CTAGCAGGTGTAATTTCCAT+TGG | + | chr4_4:52788656-52788675 | None:intergenic | 40.0% | |
| ACCTGCTAGAAAGACACAAA+AGG | - | chr4_4:52788667-52788686 | Msa0687800:CDS | 40.0% | |
| TGACCGAGAAAAGTTAAGGA+GGG | - | chr4_4:52788691-52788710 | Msa0687800:CDS | 40.0% | |
| ! | GATCCCTCCTTAACTTTTCT+CGG | + | chr4_4:52788697-52788716 | None:intergenic | 40.0% |
| CAATAAGTGAGCAGAGTCAT+TGG | - | chr4_4:52788792-52788811 | Msa0687800:intron | 40.0% | |
| GCAACAAGCAATAACGTGTT+TGG | + | chr4_4:52788885-52788904 | None:intergenic | 40.0% | |
| ! | TCTGAAATGCAGATCCTGAT+AGG | - | chr4_4:52788993-52789012 | Msa0687800:intron | 40.0% |
| GCTAAATGAAGAATCTCGTG+AGG | - | chr4_4:52789111-52789130 | Msa0687800:intron | 40.0% | |
| GTTCAATTTCCAGTTGTCTC+AGG | - | chr4_4:52789209-52789228 | Msa0687800:intron | 40.0% | |
| ! | CATTTTTCTCCTGAGACAAC+TGG | + | chr4_4:52789221-52789240 | None:intergenic | 40.0% |
| ! | ATAACGGAATGATCCATTGC+AGG | + | chr4_4:52789333-52789352 | None:intergenic | 40.0% |
| TGATTAGCATAGTAGGGGTA+CGG | + | chr4_4:52789423-52789442 | None:intergenic | 40.0% | |
| ! | GTGGCTTTTGGACATGTCAA+AGG | - | chr4_4:52788472-52788491 | Msa0687800:intron | 45.0% |
| !! | GCCTTTTGTGTCTTTCTAGC+AGG | + | chr4_4:52788671-52788690 | None:intergenic | 45.0% |
| AGGCTGACCGAGAAAAGTTA+AGG | - | chr4_4:52788687-52788706 | Msa0687800:CDS | 45.0% | |
| CTGACCGAGAAAAGTTAAGG+AGG | - | chr4_4:52788690-52788709 | Msa0687800:CDS | 45.0% | |
| ACCAGTATCAGCTGCAACTA+AGG | - | chr4_4:52789292-52789311 | Msa0687800:intron | 45.0% | |
| TCCTTAGTTGCAGCTGATAC+TGG | + | chr4_4:52789296-52789315 | None:intergenic | 45.0% | |
| TATGTATCCATGGCCTGCAA+TGG | - | chr4_4:52789317-52789336 | Msa0687800:five_prime_UTR | 45.0% | |
| ! | TGTTGGTGGAGCCATCATAA+CGG | + | chr4_4:52789349-52789368 | None:intergenic | 45.0% |
| ACTGGATACGGATATGTTGG+TGG | + | chr4_4:52789363-52789382 | None:intergenic | 45.0% | |
| GGAACTGGATACGGATATGT+TGG | + | chr4_4:52789366-52789385 | None:intergenic | 45.0% | |
| ! | GTGGCTTTTGGACATGTCAA+AGG | - | chr4_4:52788472-52788491 | Msa0687800:intron | 45.0% |
| !! | GCCTTTTGTGTCTTTCTAGC+AGG | + | chr4_4:52788671-52788690 | None:intergenic | 45.0% |
| AGGCTGACCGAGAAAAGTTA+AGG | - | chr4_4:52788687-52788706 | Msa0687800:CDS | 45.0% | |
| CTGACCGAGAAAAGTTAAGG+AGG | - | chr4_4:52788690-52788709 | Msa0687800:CDS | 45.0% | |
| ACCAGTATCAGCTGCAACTA+AGG | - | chr4_4:52789292-52789311 | Msa0687800:intron | 45.0% | |
| TCCTTAGTTGCAGCTGATAC+TGG | + | chr4_4:52789296-52789315 | None:intergenic | 45.0% | |
| TATGTATCCATGGCCTGCAA+TGG | - | chr4_4:52789317-52789336 | Msa0687800:five_prime_UTR | 45.0% | |
| ! | TGTTGGTGGAGCCATCATAA+CGG | + | chr4_4:52789349-52789368 | None:intergenic | 45.0% |
| ACTGGATACGGATATGTTGG+TGG | + | chr4_4:52789363-52789382 | None:intergenic | 45.0% | |
| GGAACTGGATACGGATATGT+TGG | + | chr4_4:52789366-52789385 | None:intergenic | 45.0% | |
| GGATCACAGCAAGCAAACGA+CGG | + | chr4_4:52787903-52787922 | None:intergenic | 50.0% | |
| ! | GGTCTGAAGTTGAACCCCAA+TGG | - | chr4_4:52788637-52788656 | Msa0687800:CDS | 50.0% |
| GAATGATCCATTGCAGGCCA+TGG | + | chr4_4:52789327-52789346 | None:intergenic | 50.0% | |
| TCCGTATCCAGTTCCAATGC+CGG | - | chr4_4:52789371-52789390 | Msa0687800:five_prime_UTR | 50.0% | |
| ! | ACCGGCATTGGAACTGGATA+CGG | + | chr4_4:52789375-52789394 | None:intergenic | 50.0% |
| GGAATTGAACCAGCAGGTAC+CGG | + | chr4_4:52789393-52789412 | None:intergenic | 50.0% | |
| TGCATGGGAATTGAACCAGC+AGG | + | chr4_4:52789399-52789418 | None:intergenic | 50.0% | |
| GGATCACAGCAAGCAAACGA+CGG | + | chr4_4:52787903-52787922 | None:intergenic | 50.0% | |
| ! | GGTCTGAAGTTGAACCCCAA+TGG | - | chr4_4:52788637-52788656 | Msa0687800:CDS | 50.0% |
| GAATGATCCATTGCAGGCCA+TGG | + | chr4_4:52789327-52789346 | None:intergenic | 50.0% | |
| TCCGTATCCAGTTCCAATGC+CGG | - | chr4_4:52789371-52789390 | Msa0687800:five_prime_UTR | 50.0% | |
| ! | ACCGGCATTGGAACTGGATA+CGG | + | chr4_4:52789375-52789394 | None:intergenic | 50.0% |
| GGAATTGAACCAGCAGGTAC+CGG | + | chr4_4:52789393-52789412 | None:intergenic | 50.0% | |
| TGCATGGGAATTGAACCAGC+AGG | + | chr4_4:52789399-52789418 | None:intergenic | 50.0% | |
| ! | TAGTAGGGGTACGGCTGCAT+GGG | + | chr4_4:52789414-52789433 | None:intergenic | 55.0% |
| ! | ATAGTAGGGGTACGGCTGCA+TGG | + | chr4_4:52789415-52789434 | None:intergenic | 55.0% |
| CAAGGGTTAGGGATGACTGC+AGG | + | chr4_4:52789450-52789469 | None:intergenic | 55.0% | |
| ! | TAGTAGGGGTACGGCTGCAT+GGG | + | chr4_4:52789414-52789433 | None:intergenic | 55.0% |
| ! | ATAGTAGGGGTACGGCTGCA+TGG | + | chr4_4:52789415-52789434 | None:intergenic | 55.0% |
| CAAGGGTTAGGGATGACTGC+AGG | + | chr4_4:52789450-52789469 | None:intergenic | 55.0% | |
| !! | GCAGGTACCGGCATTGGAAC+TGG | + | chr4_4:52789381-52789400 | None:intergenic | 60.0% |
| GTTCCAATGCCGGTACCTGC+TGG | - | chr4_4:52789381-52789400 | Msa0687800:five_prime_UTR | 60.0% | |
| !! | GAACCAGCAGGTACCGGCAT+TGG | + | chr4_4:52789387-52789406 | None:intergenic | 60.0% |
| !! | GCAGGTACCGGCATTGGAAC+TGG | + | chr4_4:52789381-52789400 | None:intergenic | 60.0% |
| GTTCCAATGCCGGTACCTGC+TGG | - | chr4_4:52789381-52789400 | Msa0687800:five_prime_UTR | 60.0% | |
| !! | GAACCAGCAGGTACCGGCAT+TGG | + | chr4_4:52789387-52789406 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 52787856 | 52789521 | 52787856 | ID=Msa0687800;Name=Msa0687800 |
| chr4_4 | mRNA | 52787856 | 52789521 | 52787856 | ID=Msa0687800-mRNA-1;Parent=Msa0687800;Name=Msa0687800-mRNA-1;_AED=0.09;_eAED=0.09;_QI=231|1|0.75|1|0.66|0.5|4|0|176 |
| chr4_4 | exon | 52787856 | 52788155 | 52787856 | ID=Msa0687800-mRNA-1:exon:13919;Parent=Msa0687800-mRNA-1 |
| chr4_4 | exon | 52788245 | 52788372 | 52788245 | ID=Msa0687800-mRNA-1:exon:13918;Parent=Msa0687800-mRNA-1 |
| chr4_4 | exon | 52788622 | 52788739 | 52788622 | ID=Msa0687800-mRNA-1:exon:13917;Parent=Msa0687800-mRNA-1 |
| chr4_4 | exon | 52789309 | 52789521 | 52789309 | ID=Msa0687800-mRNA-1:exon:13916;Parent=Msa0687800-mRNA-1 |
| chr4_4 | five_prime_UTR | 52789309 | 52789521 | 52789309 | ID=Msa0687800-mRNA-1:five_prime_utr;Parent=Msa0687800-mRNA-1 |
| chr4_4 | five_prime_UTR | 52788722 | 52788739 | 52788722 | ID=Msa0687800-mRNA-1:five_prime_utr;Parent=Msa0687800-mRNA-1 |
| chr4_4 | CDS | 52788622 | 52788721 | 52788622 | ID=Msa0687800-mRNA-1:cds;Parent=Msa0687800-mRNA-1 |
| chr4_4 | CDS | 52788245 | 52788372 | 52788245 | ID=Msa0687800-mRNA-1:cds;Parent=Msa0687800-mRNA-1 |
| chr4_4 | CDS | 52787856 | 52788155 | 52787856 | ID=Msa0687800-mRNA-1:cds;Parent=Msa0687800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
