AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0688860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0688860 MtrunA17_Chr2g0322731 51.213 701 291 11 40 698 74 765 0.0 671
Msa0688860 MtrunA17_Chr4g0024351 50.502 697 296 10 43 698 41 729 0.0 658
Msa0688860 MtrunA17_Chr5g0394111 43.875 702 288 14 42 699 8 647 5.04e-174 512
Msa0688860 MtrunA17_Chr8g0350321 41.536 703 346 13 59 698 106 806 2.35e-173 516
Msa0688860 MtrunA17_Chr7g0246631 40.948 696 335 15 67 698 91 774 5.04e-172 511
Msa0688860 MtrunA17_Chr1g0203671 39.087 701 356 14 65 698 93 789 1.47e-161 485
Msa0688860 MtrunA17_Chr2g0331581 35.259 675 358 14 73 698 145 789 3.10e-136 419
Msa0688860 MtrunA17_Chr6g0472471 36.028 705 358 16 73 698 75 765 9.08e-136 417
Msa0688860 MtrunA17_Chr6g0481041 36.040 702 375 16 66 698 27 723 7.63e-135 414
Msa0688860 MtrunA17_Chr5g0410711 35.605 719 374 19 59 702 78 782 9.15e-134 413
Msa0688860 MtrunA17_Chr1g0205981 84.574 188 27 1 122 307 1 188 1.38e-103 314
Msa0688860 MtrunA17_Chr7g0224451 37.731 432 211 12 65 482 14 401 2.42e-81 265
Msa0688860 MtrunA17_Chr2g0292731 32.480 508 288 13 209 666 12 514 2.19e-71 242
Msa0688860 MtrunA17_Chr2g0292741 33.193 476 265 12 209 635 4 475 2.90e-70 239
Msa0688860 MtrunA17_Chr7g0224481 35.772 369 180 11 65 419 14 339 1.19e-57 199
Msa0688860 MtrunA17_Chr2g0292761 28.646 576 348 14 149 699 4 541 1.50e-57 204
Msa0688860 MtrunA17_Chr2g0319671 47.093 172 85 2 301 472 103 268 6.77e-46 166
Msa0688860 MtrunA17_Chr7g0224491 35.505 307 154 11 422 698 1 293 3.43e-44 160
Msa0688860 MtrunA17_Chr2g0319691 54.054 111 49 1 362 472 1 109 1.75e-33 125
Msa0688860 MtrunA17_Chr5g0419821 41.667 132 75 1 58 187 23 154 1.21e-26 107
Msa0688860 MtrunA17_Chr2g0319681 33.173 208 130 4 495 698 23 225 1.47e-22 97.4
Msa0688860 MtrunA17_Chr2g0319701 32.843 204 124 6 500 698 28 223 4.82e-20 90.1
Msa0688860 MtrunA17_Chr2g0304191 34.351 131 81 2 261 386 1 131 1.46e-15 73.9
Msa0688860 MtrunA17_Chr2g0326731 23.775 551 291 23 58 554 10 485 2.42e-15 80.1
Msa0688860 MtrunA17_Chr2g0292391 21.296 756 403 29 53 701 2 672 5.19e-15 79.0
Msa0688860 MtrunA17_Chr7g0224461 31.452 124 61 4 589 698 1 114 2.29e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0688860 AT4G21750.2 48.813 758 299 13 22 699 10 758 0.0 691
Msa0688860 AT4G21750.1 48.813 758 299 13 22 699 10 758 0.0 691
Msa0688860 AT4G21750.3 48.813 758 299 13 22 699 10 758 0.0 691
Msa0688860 AT4G21750.4 48.813 758 299 13 22 699 10 758 0.0 691
Msa0688860 AT4G04890.2 52.478 686 275 14 60 698 54 735 0.0 686
Msa0688860 AT4G04890.1 52.478 686 275 14 60 698 54 735 0.0 686
Msa0688860 AT1G05230.8 48.851 696 295 10 44 698 41 716 0.0 644
Msa0688860 AT1G05230.4 48.851 696 295 10 44 698 41 716 0.0 644
Msa0688860 AT1G05230.9 48.851 696 295 10 44 698 41 716 0.0 644
Msa0688860 AT1G05230.10 48.851 696 295 10 44 698 41 716 0.0 644
Msa0688860 AT1G05230.7 48.851 696 295 10 44 698 41 716 0.0 644
Msa0688860 AT1G05230.11 48.851 696 295 10 44 698 41 716 0.0 644
Msa0688860 AT1G05230.2 48.851 696 295 10 44 698 41 716 0.0 644
Msa0688860 AT1G05230.6 48.851 696 295 10 44 698 41 716 0.0 644
Msa0688860 AT1G05230.5 48.851 696 295 10 44 698 41 716 0.0 644
Msa0688860 AT1G05230.1 48.851 696 295 10 44 698 41 716 0.0 644
Msa0688860 AT1G05230.3 48.707 696 294 11 44 698 41 714 0.0 637
Msa0688860 AT1G05230.12 49.135 578 238 8 44 580 41 603 0.0 542
Msa0688860 AT3G61150.1 41.185 709 327 16 66 698 109 803 2.57e-174 519
Msa0688860 AT4G00730.1 40.799 701 327 14 59 698 125 798 5.86e-168 502
Msa0688860 AT2G32370.1 39.942 691 352 14 46 695 49 717 1.75e-157 473
Msa0688860 AT5G52170.3 37.755 686 327 15 58 698 48 678 3.59e-142 432
Msa0688860 AT5G52170.1 37.755 686 327 15 58 698 48 678 3.59e-142 432
Msa0688860 AT5G52170.2 37.482 691 327 15 58 698 48 683 3.06e-141 429
Msa0688860 AT1G73360.1 36.006 686 383 12 66 698 31 713 1.92e-134 413
Msa0688860 AT1G79840.3 35.286 683 352 16 66 698 42 684 3.62e-129 398
Msa0688860 AT1G79840.6 35.286 683 352 16 66 698 42 684 3.62e-129 398
Msa0688860 AT1G79840.1 35.286 683 352 16 66 698 100 742 1.47e-128 399
Msa0688860 AT1G79840.2 35.286 683 352 16 66 698 129 771 8.40e-128 397
Msa0688860 AT1G17920.2 35.746 677 362 15 73 698 27 681 3.90e-125 388
Msa0688860 AT1G17920.1 35.746 677 362 15 73 698 27 681 3.90e-125 388
Msa0688860 AT3G03260.1 34.577 697 364 17 68 698 24 694 6.82e-113 356
Msa0688860 AT5G46880.3 34.107 689 371 19 59 674 104 782 2.54e-112 358
Msa0688860 AT5G46880.1 34.107 689 371 19 59 674 104 782 2.54e-112 358
Msa0688860 AT5G46880.2 34.107 689 371 19 59 674 104 782 2.54e-112 358
Msa0688860 AT4G00730.2 40.938 469 216 9 59 491 125 568 1.35e-106 336
Msa0688860 AT4G17710.1 33.481 675 366 17 59 700 81 705 4.52e-105 336
Msa0688860 AT1G79840.4 34.946 558 279 14 66 576 100 620 7.08e-103 328
Msa0688860 AT4G25530.1 31.746 693 385 14 54 698 30 682 7.73e-97 314
Msa0688860 AT5G17320.1 31.564 716 396 23 59 698 18 715 8.08e-90 296
Msa0688860 AT1G34650.1 31.367 695 395 19 74 698 23 705 1.61e-86 287
Msa0688860 AT3G03260.2 35.084 533 276 12 68 548 24 538 4.59e-85 278
Msa0688860 AT1G79840.5 37.071 437 222 12 66 486 100 499 4.53e-82 270
Msa0688860 AT5G07260.1 25.847 561 303 21 126 641 3 495 1.41e-33 136
Msa0688860 AT5G07260.2 26.032 557 302 22 126 641 3 490 5.88e-33 134
Msa0688860 AT2G34710.1 21.935 734 391 28 73 699 28 686 3.23e-18 89.7

Find 161 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTCTTCAATCGGTTATT+TGG 0.114581 4_4:-55123860 Msa0688860:CDS
CTCTTGCTGGATCCCCTTTA+TGG 0.142742 4_4:-55122384 Msa0688860:CDS
GAGCTTCATTTCTAGAATTT+TGG 0.158862 4_4:+55123821 None:intergenic
CCCCGTGAGTTTCGGACTTT+TGG 0.171515 4_4:+55122306 None:intergenic
CATTATCCTTTACCTTAATT+TGG 0.181539 4_4:+55123485 None:intergenic
AATTGAGAATGCTAGATTAA+AGG 0.219959 4_4:-55122824 Msa0688860:CDS
GACATTTCACCAGTAGAAAT+TGG 0.230263 4_4:+55122868 None:intergenic
GAAGCACCACCATATTATTT+TGG 0.238800 4_4:+55117660 None:intergenic
GGAAGCAAAGCAACAAAATT+TGG 0.246586 4_4:+55117548 None:intergenic
TTAGTGTTGGAACTTCTATT+TGG 0.254156 4_4:-55119610 Msa0688860:CDS
GTTGATGGTGGTTAGGATCT+TGG 0.260432 4_4:+55123782 None:intergenic
GAAATTGGATCAGTACAATT+TGG 0.265525 4_4:+55122883 None:intergenic
GTCCTTCTGTAGCTAGTTGC+TGG 0.266212 4_4:-55119718 Msa0688860:intron
GTTTCCTTTGCTTGCCATTA+GGG 0.283292 4_4:+55123572 None:intergenic
TGTTTCCTTTGCTTGCCATT+AGG 0.288076 4_4:+55123571 None:intergenic
ATAACTTCTGGTCTTGCCTT+TGG 0.290016 4_4:-55120707 Msa0688860:CDS
TAATCTCATTGATATCCTTA+TGG 0.293429 4_4:-55122233 Msa0688860:CDS
TGCTGAAAATGAGATTTATA+AGG 0.303963 4_4:-55122929 Msa0688860:CDS
AGAAGCACCAAGAAGGGATA+TGG 0.307095 4_4:-55121106 Msa0688860:CDS
CTTCTTTGTTGATGGTGGTT+AGG 0.308209 4_4:+55123775 None:intergenic
CCACTGCCCATATCCCTTCT+TGG 0.314521 4_4:+55121099 None:intergenic
GTTGCTTTGTCAAAATCATT+AGG 0.315448 4_4:+55122454 None:intergenic
TCTAAGTTGATTGTCGTTAG+AGG 0.316867 4_4:+55122846 None:intergenic
AGAACTTGCTGTGGTTTCTA+TGG 0.322944 4_4:-55122425 Msa0688860:CDS
TATAAATCTTTAATAACTTC+TGG 0.327409 4_4:-55120719 Msa0688860:CDS
ATTTATGCTCCGGTTGATAT+TGG 0.334121 4_4:-55117602 Msa0688860:CDS
ATCTACACCTGCATTTGAAA+TGG 0.335392 4_4:-55122557 Msa0688860:CDS
CACCTACGCAAATCAAGTTC+TGG 0.335520 4_4:-55123525 Msa0688860:CDS
AAACAAGCGCAACCAAATTA+AGG 0.338062 4_4:-55123497 Msa0688860:intron
TGGAACTTCTATTTGGCTTC+CGG 0.345537 4_4:-55119603 Msa0688860:CDS
GTTATTAAAGATTTATAGAA+TGG 0.351722 4_4:+55120725 None:intergenic
TCTACTCTTCTTGTTGGACT+TGG 0.352812 4_4:+55117410 None:intergenic
CTCACAATGTTAACTCTTGC+TGG 0.354778 4_4:-55122397 Msa0688860:CDS
GAATTTAACCCCGTGAGTTT+CGG 0.355247 4_4:+55122298 None:intergenic
CATCTGATTGTGACGATGTA+AGG 0.356882 4_4:-55119685 Msa0688860:CDS
AGTTACTTCTTCTTTGTTGA+TGG 0.359122 4_4:+55123767 None:intergenic
GTTCTATCACCTGGAGTGTC+AGG 0.361997 4_4:-55122007 Msa0688860:CDS
AGGTTCACCAATACTTGTTT+TGG 0.366406 4_4:+55119655 None:intergenic
TGGCAAGCAAAGGAAACAAT+TGG 0.370644 4_4:-55123566 Msa0688860:CDS
CAATGCTACTTTGATCCGTT+TGG 0.373909 4_4:+55117343 None:intergenic
ATAACACATGGTCGTGATCT+TGG 0.375211 4_4:-55117861 Msa0688860:CDS
TAATTGCGACCAAAATAATA+TGG 0.382978 4_4:-55117669 Msa0688860:CDS
AAGAGATGGGTGACCTCATT+AGG 0.385790 4_4:-55120680 Msa0688860:CDS
CAGTGGGATGTTCTTTCCGT+TGG 0.395595 4_4:-55117909 Msa0688860:CDS
GTTCTCAATTGTGCCCTATC+GGG 0.401218 4_4:+55117506 None:intergenic
ATGTACTACTACTTGGTTGC+AGG 0.403605 4_4:+55121057 None:intergenic
ACAATACCAGTAGGTGTTCC+AGG 0.410735 4_4:+55119635 None:intergenic
TTTGTTGCTTTGCTTCCCTC+TGG 0.413727 4_4:-55117542 Msa0688860:CDS
TTCTGAATCTTCAAGAGAAT+CGG 0.421428 4_4:-55122278 Msa0688860:CDS
TCATTGGTGGAAATCCATAA+AGG 0.424927 4_4:+55122370 None:intergenic
TGTGATGGCAATGACCCCTT+AGG 0.427537 4_4:-55122490 Msa0688860:CDS
CATACCTTTGAACAACCATT+TGG 0.429043 4_4:+55120993 None:intergenic
AGTGGGATGTTCTTTCCGTT+GGG 0.429047 4_4:-55117908 Msa0688860:CDS
GGCAGTGGTTGATGTTTCCT+TGG 0.429868 4_4:-55121084 Msa0688860:CDS
CGTGTCAATGTACTACTACT+TGG 0.431548 4_4:+55121050 None:intergenic
GCTGAAAATGAGATTTATAA+GGG 0.432066 4_4:-55122928 Msa0688860:CDS
TCTGTGAATGCAATCTTAAA+TGG 0.432736 4_4:-55117578 Msa0688860:CDS
TAACATCTATTTAGGTTACA+TGG 0.434505 4_4:-55120790 Msa0688860:intron
AAACAATTGGGTTGTGAGCT+AGG 0.435034 4_4:-55123553 Msa0688860:CDS
CCCAAAAGTCCGAAACTCAC+GGG 0.438000 4_4:-55122307 Msa0688860:CDS
AAAAGCCTCCTTGGAACAAC+CGG 0.439163 4_4:+55119584 None:intergenic
GGTTCTCAATTGTGCCCTAT+CGG 0.442618 4_4:+55117505 None:intergenic
GTTTAGAATCTCAGTGTCAT+TGG 0.442788 4_4:+55122354 None:intergenic
ATCAACATCACTTCTTCAAT+CGG 0.448285 4_4:-55123868 Msa0688860:CDS
GAGCAATGCCCTCTCCCTAA+TGG 0.448625 4_4:-55123586 Msa0688860:CDS
ATGCTTAATTATGTTGAACT+TGG 0.451961 4_4:-55117473 Msa0688860:CDS
CATTGGTGGAAATCCATAAA+GGG 0.456139 4_4:+55122371 None:intergenic
TTGCCTTTGGAGCTAAGAGA+TGG 0.456296 4_4:-55120694 Msa0688860:CDS
TACTTCTTCTTTGTTGATGG+TGG 0.456523 4_4:+55123770 None:intergenic
GTCTTCTACAGGTATGTTGT+TGG 0.464682 4_4:+55120625 None:intergenic
TGTACTGATCCAATTTCTAC+TGG 0.464976 4_4:-55122877 Msa0688860:CDS
GGTGAACCTGGAACACCTAC+TGG 0.466104 4_4:-55119641 Msa0688860:CDS
CTTAATTATGTTGAACTTGG+AGG 0.468920 4_4:-55117470 Msa0688860:CDS
TCTACACCTGCATTTGAAAT+GGG 0.468937 4_4:-55122556 Msa0688860:CDS
ACTGGTATTGTTCTTAGTGT+TGG 0.469493 4_4:-55119623 Msa0688860:CDS
GTCACATGTTATTTATGCTC+CGG 0.478576 4_4:-55117612 Msa0688860:CDS
CAAAATCATTAGGAATTGAG+AGG 0.481538 4_4:+55122464 None:intergenic
AGTAAACGATGTAGATCTAG+TGG 0.483303 4_4:-55122605 Msa0688860:CDS
CTTTGCTTGCCATTAGGGAG+AGG 0.485297 4_4:+55123577 None:intergenic
ATTGAAGAAGTGATGTTGAT+TGG 0.487313 4_4:+55123871 None:intergenic
GCATGTCTCGAAATTGTTGT+TGG 0.489021 4_4:+55123893 None:intergenic
TCCTTCTGTAGCTAGTTGCT+GGG 0.489084 4_4:-55119717 Msa0688860:intron
TTGTATTTCCCTGACACTCC+AGG 0.491222 4_4:+55121998 None:intergenic
TTCACAGAACCAATATCAAC+CGG 0.493030 4_4:+55117593 None:intergenic
AATGAGATTAATATGACTCA+TGG 0.499793 4_4:+55122246 None:intergenic
TGTTGTTGGTGTACTGATTG+AGG 0.500312 4_4:+55123907 None:intergenic
TTTGCTTGCCATTAGGGAGA+GGG 0.507766 4_4:+55123578 None:intergenic
TTAATTCAAGAACTACCAAA+TGG 0.513476 4_4:-55121008 Msa0688860:CDS
GAAGCACCAAGAAGGGATAT+GGG 0.516565 4_4:-55121105 Msa0688860:CDS
TTTGGCTTCCGGTTGTTCCA+AGG 0.518609 4_4:-55119592 Msa0688860:CDS
AGGAATTGAGAGGGACCCTA+AGG 0.522532 4_4:+55122474 None:intergenic
GGCAAGCAAAGGAAACAATT+GGG 0.526817 4_4:-55123565 Msa0688860:CDS
CCACTTCCCATTTCAAATGC+AGG 0.528835 4_4:+55122550 None:intergenic
TCCCAAAAGTCCGAAACTCA+CGG 0.534087 4_4:-55122308 Msa0688860:CDS
TAAACGAAGTTGAATACCCT+AGG 0.535905 4_4:-55122336 Msa0688860:CDS
TCTTAGATTGAAATGTTCAC+AGG 0.536806 4_4:-55122634 Msa0688860:intron
GTGGGATGTTCTTTCCGTTG+GGG 0.539001 4_4:-55117907 Msa0688860:CDS
GTGATGGCAATGACCCCTTA+GGG 0.541659 4_4:-55122489 Msa0688860:CDS
TGTTACTCACCACATCCATA+AGG 0.542549 4_4:+55122218 None:intergenic
GTCATGACCAAAACAAGTAT+TGG 0.543952 4_4:-55119662 Msa0688860:CDS
AATTGAAAGGAAAATGGTTG+AGG 0.544455 4_4:-55123971 None:intergenic
ACACCACAATGGTCTTCTAC+AGG 0.546742 4_4:+55120614 None:intergenic
CTGAAAATGAGATTTATAAG+GGG 0.547052 4_4:-55122927 Msa0688860:CDS
TATTCTAAGAAGCACCAAGA+AGG 0.548624 4_4:-55121113 Msa0688860:CDS
GAATGCTAGATTAAAGGTTG+AGG 0.549279 4_4:-55122818 Msa0688860:intron
ATCTGATTGTGACGATGTAA+GGG 0.553401 4_4:-55119684 Msa0688860:CDS
TTGACACGAAGACGACCCTC+TGG 0.556162 4_4:-55121035 Msa0688860:CDS
CACCCATCTCTTAGCTCCAA+AGG 0.557537 4_4:+55120691 None:intergenic
AAAACAAGTATTGGTGAACC+TGG 0.558177 4_4:-55119653 Msa0688860:CDS
CGAGCAGGAACCAGTGGTGA+AGG 0.561584 4_4:+55121155 None:intergenic
ACACTTGAAGTTCTATCACC+TGG 0.562131 4_4:-55122016 Msa0688860:CDS
TATATGCATGCAGACACAAC+AGG 0.563812 4_4:-55122998 Msa0688860:intron
CCTGCATTTGAAATGGGAAG+TGG 0.564061 4_4:-55122550 Msa0688860:CDS
AACGATTGTAGAACTTGCTG+TGG 0.564853 4_4:-55122434 Msa0688860:CDS
GGTTAGGATCTTGGTCTCGA+AGG 0.567881 4_4:+55123791 None:intergenic
CATTGATATCCTTATGGATG+TGG 0.570663 4_4:-55122227 Msa0688860:intron
CAAACGGATCAAAGTAGCAT+TGG 0.575903 4_4:-55117342 Msa0688860:CDS
TGCCTTTGGAGCTAAGAGAT+GGG 0.576583 4_4:-55120693 Msa0688860:CDS
TAGAATCTCAGTGTCATTGG+TGG 0.577352 4_4:+55122357 None:intergenic
CCAAGAAGGGATATGGGCAG+TGG 0.578162 4_4:-55121099 Msa0688860:CDS
ATTCTAAGAAGCACCAAGAA+GGG 0.578884 4_4:-55121112 Msa0688860:CDS
TGGGATGTTCTTTCCGTTGG+GGG 0.579262 4_4:-55117906 Msa0688860:CDS
TTCTCAATTGTGCCCTATCG+GGG 0.581221 4_4:+55117507 None:intergenic
ACTTGCTGTGGTTTCTATGG+AGG 0.581567 4_4:-55122422 Msa0688860:CDS
TTCACATTGTCTACCTAATG+AGG 0.582090 4_4:+55120667 None:intergenic
AAACGAAGTTGAATACCCTA+GGG 0.587167 4_4:-55122335 Msa0688860:CDS
TAGTTAAGAACACAACCAAA+CGG 0.589021 4_4:-55117358 Msa0688860:CDS
GTTAGGATCTTGGTCTCGAA+GGG 0.591139 4_4:+55123792 None:intergenic
ATGGGTAGAGCATGTAGAAG+TGG 0.593325 4_4:-55120771 Msa0688860:CDS
AACATCTATTTAGGTTACAT+GGG 0.594451 4_4:-55120789 Msa0688860:intron
ACTACCAAATGGTTGTTCAA+AGG 0.598187 4_4:-55120997 Msa0688860:intron
ACTTGGTTGCAGGTGATCCA+AGG 0.598845 4_4:+55121067 None:intergenic
ACAATAACATTGATAGTACA+TGG 0.609718 4_4:-55117634 Msa0688860:CDS
TCTTGAATTAAACAACCAGA+GGG 0.610220 4_4:+55121020 None:intergenic
AGGGCACAATTGAGAACCAC+AGG 0.611548 4_4:-55117500 Msa0688860:CDS
CTCTCCCTAATGGCAAGCAA+AGG 0.612273 4_4:-55123576 Msa0688860:CDS
TTCTATCACCTGGAGTGTCA+GGG 0.612390 4_4:-55122006 Msa0688860:CDS
GGAATTGAGAGGGACCCTAA+GGG 0.613172 4_4:+55122475 None:intergenic
AGTTCAACATAATTAAGCAT+AGG 0.615403 4_4:+55117476 None:intergenic
AAAATCATTAGGAATTGAGA+GGG 0.623957 4_4:+55122465 None:intergenic
ACACTAAGAACAATACCAGT+AGG 0.625896 4_4:+55119626 None:intergenic
CCAAAAGTCCGAAACTCACG+GGG 0.627216 4_4:-55122306 Msa0688860:CDS
TTCTTGAATTAAACAACCAG+AGG 0.628816 4_4:+55121019 None:intergenic
AACAGTGTCACATCAAAATG+TGG 0.629990 4_4:-55123938 Msa0688860:CDS
ATAGAAGAATTGTATTGTGA+TGG 0.630421 4_4:-55122505 Msa0688860:CDS
GGCTTCCGGTTGTTCCAAGG+AGG 0.634589 4_4:-55119589 Msa0688860:CDS
ATAATTAAGCATAGGTCCTG+TGG 0.640980 4_4:+55117484 None:intergenic
TGAAAATGAGATTTATAAGG+GGG 0.644287 4_4:-55122926 Msa0688860:CDS
GTAAACGATGTAGATCTAGT+GGG 0.648604 4_4:-55122604 Msa0688860:CDS
AAATCAAAATTCAAGAAGTG+AGG 0.648827 4_4:-55119549 Msa0688860:intron
GGAGTGTCAGGGAAATACAA+TGG 0.654696 4_4:-55121995 Msa0688860:CDS
ATTGGTGGAAATCCATAAAG+GGG 0.655135 4_4:+55122372 None:intergenic
TTGCGACCAAAATAATATGG+TGG 0.657066 4_4:-55117666 Msa0688860:CDS
GAATTGAGAGGGACCCTAAG+GGG 0.659587 4_4:+55122476 None:intergenic
AACCAGAACTTGATTTGCGT+AGG 0.660427 4_4:+55123523 None:intergenic
ATACAATGGAGCTCTACAAG+TGG 0.665675 4_4:-55121981 Msa0688860:intron
GGGGAGAATAACAAAACCAG+AGG 0.682229 4_4:+55117526 None:intergenic
GGGAGAATAACAAAACCAGA+GGG 0.693191 4_4:+55117527 None:intergenic
GAAATGGAACACATAACACA+TGG 0.699091 4_4:-55117873 Msa0688860:CDS
GTGAATGCAATCTTAAATGG+TGG 0.703104 4_4:-55117575 Msa0688860:CDS
ATACCTGTAGAAGACCATTG+TGG 0.788141 4_4:-55120617 Msa0688860:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTAA+GGG - chr4_4:55119913-55119932 Msa0688860:intron 0.0%
!!! ATATAAATATTTTTTTTATT+AGG - chr4_4:55122350-55122369 Msa0688860:CDS 0.0%
!! ATGTTTAATTATCTAAAAAA+AGG + chr4_4:55117605-55117624 None:intergenic 10.0%
!!! TAGTACAAATTTATTTTTAA+GGG + chr4_4:55117864-55117883 None:intergenic 10.0%
!!! ATAGTACAAATTTATTTTTA+AGG + chr4_4:55117865-55117884 None:intergenic 10.0%
!!! GTAAATTTTTACTTATATTT+TGG - chr4_4:55118015-55118034 Msa0688860:intron 10.0%
!!! TTTTTTAAACTAAATCAAAA+AGG + chr4_4:55119345-55119364 None:intergenic 10.0%
!! AAAAAAAAAAAAAAAAAGTG+GGG + chr4_4:55119910-55119929 None:intergenic 10.0%
!!! ATTTTTATTGTTTTTTGAAA+AGG - chr4_4:55120955-55120974 Msa0688860:intron 10.0%
!! AAAAAAAAATTATAATTGCA+TGG + chr4_4:55121122-55121141 None:intergenic 10.0%
!! TTGATATATTCATAAAATAT+TGG - chr4_4:55122031-55122050 Msa0688860:CDS 10.0%
!! TATATTTGATTAACATATAT+TGG + chr4_4:55122143-55122162 None:intergenic 10.0%
!!! TATAAATATTTTTAACATCA+GGG - chr4_4:55122244-55122263 Msa0688860:CDS 10.0%
!!! AATTATATTTTTACTTTTGT+GGG - chr4_4:55123177-55123196 Msa0688860:intron 10.0%
!!! AATTTTTACTTATATTTTGG+TGG - chr4_4:55118018-55118037 Msa0688860:intron 15.0%
!!! ACATTAATGTATTTTCATTT+TGG - chr4_4:55118173-55118192 Msa0688860:intron 15.0%
!!! AAGATATCAATAATTTTCAT+AGG - chr4_4:55119087-55119106 Msa0688860:intron 15.0%
!!! ATAATATTGCAATTTTCTAT+TGG - chr4_4:55119187-55119206 Msa0688860:intron 15.0%
!!! AAAAGTACAAGAATTTTTTT+AGG - chr4_4:55119616-55119635 Msa0688860:CDS 15.0%
!!! AAAGTACAAGAATTTTTTTA+GGG - chr4_4:55119617-55119636 Msa0688860:CDS 15.0%
!! AAAAAAAAAAAAAAAAGTGG+GGG + chr4_4:55119909-55119928 None:intergenic 15.0%
!! AATGTAAATTGTTAAATACA+TGG + chr4_4:55120410-55120429 None:intergenic 15.0%
!! GTTATTAAAGATTTATAGAA+TGG + chr4_4:55120561-55120580 None:intergenic 15.0%
!! TATAAATCTTTAATAACTTC+TGG - chr4_4:55120564-55120583 Msa0688860:intron 15.0%
!!! CTATGTGTATATTAAAATTT+TGG + chr4_4:55120853-55120872 None:intergenic 15.0%
!!! CAAAATTTTAATATACACAT+AGG - chr4_4:55120851-55120870 Msa0688860:intron 15.0%
!!! TTATAATGGAAAAATAAAGA+AGG + chr4_4:55120999-55121018 None:intergenic 15.0%
!! AAAATGGTCAATAATTATAA+TGG + chr4_4:55121013-55121032 None:intergenic 15.0%
!!! CAACTATTTTTAAATTAACA+AGG - chr4_4:55121248-55121267 Msa0688860:intron 15.0%
!! TTTATAACATTATAACATCA+CGG + chr4_4:55121809-55121828 None:intergenic 15.0%
!! TATATTCATAAAATATTGGA+TGG - chr4_4:55122035-55122054 Msa0688860:CDS 15.0%
!!! TAAATATTTTTTACTTAGAC+AGG + chr4_4:55122213-55122232 None:intergenic 15.0%
!!! GTATAAATATTTTTAACATC+AGG - chr4_4:55122243-55122262 Msa0688860:CDS 15.0%
!! AAATTTAAGAAACAAAGTAT+CGG + chr4_4:55122461-55122480 None:intergenic 15.0%
!!! GAATTATATTTTTACTTTTG+TGG - chr4_4:55123176-55123195 Msa0688860:intron 15.0%
!! CTAGAATATATATATAATCT+TGG + chr4_4:55123509-55123528 None:intergenic 15.0%
!!! TTTTTGTTTATAATTGAGAC+TGG + chr4_4:55117890-55117909 None:intergenic 20.0%
!! CATTCAATAACTAATGTATT+CGG - chr4_4:55117947-55117966 Msa0688860:intron 20.0%
!! GATAATGCATAAAATATGAT+AGG + chr4_4:55118066-55118085 None:intergenic 20.0%
!! TCAAATTATAATGCACAATT+TGG + chr4_4:55118249-55118268 None:intergenic 20.0%
!!! TTTATTTCTCATTTTCTTGT+TGG - chr4_4:55118590-55118609 Msa0688860:intron 20.0%
!!! AGATATTTGATCAATTTTAG+AGG + chr4_4:55118710-55118729 None:intergenic 20.0%
!!! AAGTACAAGAATTTTTTTAG+GGG - chr4_4:55119618-55119637 Msa0688860:CDS 20.0%
!! GTTCAAAAACAATAGATAAA+AGG + chr4_4:55119698-55119717 None:intergenic 20.0%
!!! TCTATTGTTTTTGAACTTTT+TGG - chr4_4:55119702-55119721 Msa0688860:CDS 20.0%
!! AAAAAAAAAAAAAAAGTGGG+GGG + chr4_4:55119908-55119927 None:intergenic 20.0%
!!! ATAGATGTTACAATTCATTT+TGG + chr4_4:55120483-55120502 None:intergenic 20.0%
!! ATGAATTGTAACATCTATTT+AGG - chr4_4:55120485-55120504 Msa0688860:intron 20.0%
!! ATTAAAAATATACACCACAA+TGG + chr4_4:55120683-55120702 None:intergenic 20.0%
!! TCCTTAATTAATGCTAATTT+CGG + chr4_4:55120784-55120803 None:intergenic 20.0%
!!! TGTCTTATTCATTTTTTAAG+TGG - chr4_4:55121388-55121407 Msa0688860:intron 20.0%
!!! GTCTTATTCATTTTTTAAGT+GGG - chr4_4:55121389-55121408 Msa0688860:intron 20.0%
!! TTATAACATTATAACATCAC+GGG + chr4_4:55121808-55121827 None:intergenic 20.0%
!!! TTGATTCTTTCATTTTGTTT+TGG - chr4_4:55121936-55121955 Msa0688860:intron 20.0%
!! AACAAGACAATTAATACAAA+AGG + chr4_4:55122081-55122100 None:intergenic 20.0%
!! TAACATATATTGGACAAAAA+TGG + chr4_4:55122133-55122152 None:intergenic 20.0%
!! TAATCAAATATAATCCCTAA+TGG - chr4_4:55122151-55122170 Msa0688860:intron 20.0%
!!! TTTTCTTTTTTTTTTTTCCG+CGG - chr4_4:55122187-55122206 Msa0688860:intron 20.0%
!!! TTTTTTTTTTTAGCAACATC+AGG - chr4_4:55122269-55122288 Msa0688860:CDS 20.0%
!!! TTTTTTTTTTAGCAACATCA+GGG - chr4_4:55122270-55122289 Msa0688860:CDS 20.0%
!!! GTACTATAAAAGTTCTTTTA+AGG + chr4_4:55122419-55122438 None:intergenic 20.0%
!! TATAGTACATTTGTAAATTG+AGG - chr4_4:55122431-55122450 Msa0688860:CDS 20.0%
!! AAAAAAATTTATCCTCCTAT+TGG - chr4_4:55122561-55122580 Msa0688860:CDS 20.0%
!! AAAAAATTTATCCTCCTATT+GGG - chr4_4:55122562-55122581 Msa0688860:CDS 20.0%
!! AAAAAATCTTATCTTAATGC+CGG + chr4_4:55123089-55123108 None:intergenic 20.0%
!! AATTGTAAAATAGAACAAAC+TGG - chr4_4:55123206-55123225 Msa0688860:intron 20.0%
!!! ATTTTGTTGAATTTTACAGT+GGG - chr4_4:55123358-55123377 Msa0688860:intron 20.0%
!! ATAAAATTTGAGAGAAAGTT+AGG + chr4_4:55123543-55123562 None:intergenic 20.0%
! ACAAAAACAGATTCAAGAAA+TGG - chr4_4:55117549-55117568 Msa0688860:CDS 25.0%
!! TCTAAAAAAAGGAAGAGTAT+TGG + chr4_4:55117594-55117613 None:intergenic 25.0%
! CATTATCCTTTACCTTAATT+TGG + chr4_4:55117801-55117820 None:intergenic 25.0%
! TAAGATCTCACATTTCAAAA+GGG + chr4_4:55117828-55117847 None:intergenic 25.0%
! CATTCAATAACCAATGTATT+TGG + chr4_4:55117985-55118004 None:intergenic 25.0%
!!! TTTTACTTATATTTTGGTGG+TGG - chr4_4:55118021-55118040 Msa0688860:intron 25.0%
!! TTCATCAAAATGATCTTTTG+AGG - chr4_4:55118311-55118330 Msa0688860:intron 25.0%
!! TCATCAAAATGATCTTTTGA+GGG - chr4_4:55118312-55118331 Msa0688860:intron 25.0%
! TGCTGAAAATGAGATTTATA+AGG - chr4_4:55118354-55118373 Msa0688860:intron 25.0%
! GCTGAAAATGAGATTTATAA+GGG - chr4_4:55118355-55118374 Msa0688860:intron 25.0%
! CTGAAAATGAGATTTATAAG+GGG - chr4_4:55118356-55118375 Msa0688860:intron 25.0%
! TGAAAATGAGATTTATAAGG+GGG - chr4_4:55118357-55118376 Msa0688860:intron 25.0%
! AATTGAGAATGCTAGATTAA+AGG - chr4_4:55118459-55118478 Msa0688860:intron 25.0%
!!! TATTTGATCAATTTTAGAGG+AGG + chr4_4:55118707-55118726 None:intergenic 25.0%
! ATAGAAGAATTGTATTGTGA+TGG - chr4_4:55118778-55118797 Msa0688860:intron 25.0%
! AAAATCATTAGGAATTGAGA+GGG + chr4_4:55118821-55118840 None:intergenic 25.0%
! AATGAGATTAATATGACTCA+TGG + chr4_4:55119040-55119059 None:intergenic 25.0%
! TAATCTCATTGATATCCTTA+TGG - chr4_4:55119050-55119069 Msa0688860:intron 25.0%
!!! AGTACAAGAATTTTTTTAGG+GGG - chr4_4:55119619-55119638 Msa0688860:CDS 25.0%
!!! TTGTTTTTGAACTTTTTGGT+CGG - chr4_4:55119706-55119725 Msa0688860:CDS 25.0%
! ATGATCAAGTGTTTATAAGT+GGG + chr4_4:55119777-55119796 None:intergenic 25.0%
! TTAAACCATCTAAGAATTTG+TGG - chr4_4:55119823-55119842 Msa0688860:intron 25.0%
!!! GTTTTTTAAAGTCGAATTTG+AGG + chr4_4:55119863-55119882 None:intergenic 25.0%
! TTAATTCAAGAACTACCAAA+TGG - chr4_4:55120275-55120294 Msa0688860:intron 25.0%
!! TAACATCTATTTAGGTTACA+TGG - chr4_4:55120493-55120512 Msa0688860:intron 25.0%
!! AACATCTATTTAGGTTACAT+GGG - chr4_4:55120494-55120513 Msa0688860:intron 25.0%
!!! ATCTATCTTTTTCAAGAAGT+CGG - chr4_4:55120749-55120768 Msa0688860:CDS 25.0%
! ACCGAAATTAGCATTAATTA+AGG - chr4_4:55120780-55120799 Msa0688860:intron 25.0%
! TGCTAATAAGTAGATGAAAA+TGG + chr4_4:55121029-55121048 None:intergenic 25.0%
!!! TTTTTTTTATCAGTGCTTCT+AGG + chr4_4:55121291-55121310 None:intergenic 25.0%
! AAATCAAAATTCAAGAAGTG+AGG - chr4_4:55121734-55121753 Msa0688860:intron 25.0%
!!! ATTTTGTTTTGGCCTTATAT+TGG - chr4_4:55121947-55121966 Msa0688860:intron 25.0%
!!! TTTTGTTTTGGCCTTATATT+GGG - chr4_4:55121948-55121967 Msa0688860:intron 25.0%
!! ACTTCTTAATTTTTCCATGA+TGG - chr4_4:55121990-55122009 Msa0688860:CDS 25.0%
!! CTTCTTAATTTTTCCATGAT+GGG - chr4_4:55121991-55122010 Msa0688860:CDS 25.0%
! TATATTGGACAAAAATGGAA+GGG + chr4_4:55122128-55122147 None:intergenic 25.0%
! ATATATTGGACAAAAATGGA+AGG + chr4_4:55122129-55122148 None:intergenic 25.0%
! ATATACATGTTGTTACACAT+AGG + chr4_4:55122334-55122353 None:intergenic 25.0%
!! CTTTTATTGGATTGAAATCA+AGG + chr4_4:55122647-55122666 None:intergenic 25.0%
! ATTTCAATCCAATAAAAGAG+TGG - chr4_4:55122649-55122668 Msa0688860:intron 25.0%
! TTTCAATCCAATAAAAGAGT+GGG - chr4_4:55122650-55122669 Msa0688860:intron 25.0%
!! GTTGACAAATAACTTTTTAG+AGG + chr4_4:55122715-55122734 None:intergenic 25.0%
! CAAACAAACAACTCATTTAA+TGG - chr4_4:55122951-55122970 Msa0688860:CDS 25.0%
!! CATTTTGTTGAATTTTACAG+TGG - chr4_4:55123357-55123376 Msa0688860:intron 25.0%
! ATTAATTGACAGTTACCAAA+AGG + chr4_4:55123584-55123603 None:intergenic 25.0%
! TAATTGCGACCAAAATAATA+TGG - chr4_4:55123614-55123633 Msa0688860:intron 25.0%
!! ACAATAACATTGATAGTACA+TGG - chr4_4:55123649-55123668 Msa0688860:intron 25.0%
! AGTTCAACATAATTAAGCAT+AGG + chr4_4:55123810-55123829 None:intergenic 25.0%
! ATGCTTAATTATGTTGAACT+TGG - chr4_4:55123810-55123829 Msa0688860:CDS 25.0%
ATTGAAGAAGTGATGTTGAT+TGG + chr4_4:55117415-55117434 None:intergenic 30.0%
ATCAACATCACTTCTTCAAT+CGG - chr4_4:55117415-55117434 Msa0688860:CDS 30.0%
!!! GAGCTTCATTTCTAGAATTT+TGG + chr4_4:55117465-55117484 None:intergenic 30.0%
AGTTACTTCTTCTTTGTTGA+TGG + chr4_4:55117519-55117538 None:intergenic 30.0%
ATTCAAGAAATGGAATCGTA+GGG - chr4_4:55117559-55117578 Msa0688860:CDS 30.0%
! CATCAATTTGTGATGTTTTC+AGG - chr4_4:55117668-55117687 Msa0688860:CDS 30.0%
GTAAGATCTCACATTTCAAA+AGG + chr4_4:55117829-55117848 None:intergenic 30.0%
GTAATACTGTCCAAATACAT+TGG - chr4_4:55117972-55117991 Msa0688860:intron 30.0%
CATAAAATATGATAGGTCCT+TGG + chr4_4:55118059-55118078 None:intergenic 30.0%
AATTTAAAGACGTACTCCAT+CGG + chr4_4:55118142-55118161 None:intergenic 30.0%
GAAATTGGATCAGTACAATT+TGG + chr4_4:55118403-55118422 None:intergenic 30.0%
! ATTTTATATACACAGTGCAC+TGG + chr4_4:55118566-55118585 None:intergenic 30.0%
! TTTCTTGTTGGTTGAACTAA+TGG - chr4_4:55118602-55118621 Msa0688860:intron 30.0%
TCTTAGATTGAAATGTTCAC+AGG - chr4_4:55118649-55118668 Msa0688860:intron 30.0%
CAAAATCATTAGGAATTGAG+AGG + chr4_4:55118822-55118841 None:intergenic 30.0%
! GTTGCTTTGTCAAAATCATT+AGG + chr4_4:55118832-55118851 None:intergenic 30.0%
TTCTGAATCTTCAAGAGAAT+CGG - chr4_4:55119005-55119024 Msa0688860:intron 30.0%
! AAGTTTTCTATCACCACTTT+TGG + chr4_4:55119587-55119606 None:intergenic 30.0%
! GTGGTGATAGAAAACTTTTA+AGG - chr4_4:55119590-55119609 Msa0688860:CDS 30.0%
!! TGTTTTTGAACTTTTTGGTC+GGG - chr4_4:55119707-55119726 Msa0688860:CDS 30.0%
TGATCAAGTGTTTATAAGTG+GGG + chr4_4:55119776-55119795 None:intergenic 30.0%
CATGATCAAGTGTTTATAAG+TGG + chr4_4:55119778-55119797 None:intergenic 30.0%
TGTCATCTCTTAACAAATGT+AGG - chr4_4:55119796-55119815 Msa0688860:intron 30.0%
AATGTTACAAAGTCTGACAT+TGG + chr4_4:55119976-55119995 None:intergenic 30.0%
TCTTGAATTAAACAACCAGA+GGG + chr4_4:55120266-55120285 None:intergenic 30.0%
TTCTTGAATTAAACAACCAG+AGG + chr4_4:55120267-55120286 None:intergenic 30.0%
GTATTGTATGATGTTGAGAA+TGG - chr4_4:55120351-55120370 Msa0688860:intron 30.0%
! TGTTAAATACATGGTTTGCA+TGG + chr4_4:55120401-55120420 None:intergenic 30.0%
!!! TTTTTTTCTAGTTCCCTCTA+CGG - chr4_4:55121136-55121155 Msa0688860:CDS 30.0%
AGTCTTCAATGACAGTTTAT+TGG - chr4_4:55121175-55121194 Msa0688860:CDS 30.0%
GTCTTCAATGACAGTTTATT+GGG - chr4_4:55121176-55121195 Msa0688860:CDS 30.0%
! AATGAATAAGACAAAAGTGC+AGG + chr4_4:55121381-55121400 None:intergenic 30.0%
! TTAGTGTTGGAACTTCTATT+TGG - chr4_4:55121673-55121692 Msa0688860:intron 30.0%
TGAGATTCATTTCATTTGCT+AGG + chr4_4:55121864-55121883 None:intergenic 30.0%
ATGAATCTCAACAAAATCAC+AGG - chr4_4:55121874-55121893 Msa0688860:intron 30.0%
TGAATCTCAACAAAATCACA+GGG - chr4_4:55121875-55121894 Msa0688860:intron 30.0%
CATAAATGTCACCCAATATA+AGG + chr4_4:55121962-55121981 None:intergenic 30.0%
ATATTGGGTGACATTTATGA+TGG - chr4_4:55121963-55121982 Msa0688860:intron 30.0%
TATTGGGTGACATTTATGAT+GGG - chr4_4:55121964-55121983 Msa0688860:intron 30.0%
!! AATTTTTCCATGATGGGAAA+AGG - chr4_4:55121997-55122016 Msa0688860:CDS 30.0%
AAGAAAGAGATAGTCCATTA+GGG + chr4_4:55122168-55122187 None:intergenic 30.0%
AAAGAAAGAGATAGTCCATT+AGG + chr4_4:55122169-55122188 None:intergenic 30.0%
!!! TTTTTTTTGAGCAACCCAAT+AGG + chr4_4:55122544-55122563 None:intergenic 30.0%
TTATTGGATTGAAATCAAGG+TGG + chr4_4:55122644-55122663 None:intergenic 30.0%
!! AACTTTTTAGAGGAGTGATA+TGG + chr4_4:55122705-55122724 None:intergenic 30.0%
TCCTTCATTTCGATAAAGAA+CGG - chr4_4:55123023-55123042 Msa0688860:intron 30.0%
! GTTCTTAATTTTCCCATGAT+GGG + chr4_4:55123264-55123283 None:intergenic 30.0%
GCTACTTAGCTTCAATATAA+GGG + chr4_4:55123307-55123326 None:intergenic 30.0%
! TGCTACTTAGCTTCAATATA+AGG + chr4_4:55123308-55123327 None:intergenic 30.0%
TTCTTTAATTATACCCCCAA+CGG + chr4_4:55123393-55123412 None:intergenic 30.0%
! TGGGGGTATAATTAAAGAAA+TGG - chr4_4:55123394-55123413 Msa0688860:intron 30.0%
!! TTTTCACCTAAAGTACCTTT+TGG - chr4_4:55123566-55123585 Msa0688860:CDS 30.0%
TAACTGTCAATTAATTGCAG+AGG - chr4_4:55123589-55123608 Msa0688860:CDS 30.0%
AACTGTCAATTAATTGCAGA+GGG - chr4_4:55123590-55123609 Msa0688860:CDS 30.0%
TCTGTGAATGCAATCTTAAA+TGG - chr4_4:55123705-55123724 Msa0688860:intron 30.0%
CTTAATTATGTTGAACTTGG+AGG - chr4_4:55123813-55123832 Msa0688860:CDS 30.0%
! TCATTTTCTACTCTTCTTGT+TGG + chr4_4:55123882-55123901 None:intergenic 30.0%
TAGTTAAGAACACAACCAAA+CGG - chr4_4:55123925-55123944 Msa0688860:CDS 30.0%
AACAGTGTCACATCAAAATG+TGG - chr4_4:55117345-55117364 Msa0688860:CDS 35.0%
CACTTCTTCAATCGGTTATT+TGG - chr4_4:55117423-55117442 Msa0688860:CDS 35.0%
! TACTTCTTCTTTGTTGATGG+TGG + chr4_4:55117516-55117535 None:intergenic 35.0%
GATTCAAGAAATGGAATCGT+AGG - chr4_4:55117558-55117577 Msa0688860:CDS 35.0%
AAACAAGCGCAACCAAATTA+AGG - chr4_4:55117786-55117805 Msa0688860:intron 35.0%
AATGTGAGATCTTACATGCA+CGG - chr4_4:55117834-55117853 Msa0688860:CDS 35.0%
TTACTGATAACTGATACCGA+TGG - chr4_4:55118123-55118142 Msa0688860:intron 35.0%
! TGTACTGATCCAATTTCTAC+TGG - chr4_4:55118406-55118425 Msa0688860:intron 35.0%
GACATTTCACCAGTAGAAAT+TGG + chr4_4:55118418-55118437 None:intergenic 35.0%
!! TCTAAGTTGATTGTCGTTAG+AGG + chr4_4:55118440-55118459 None:intergenic 35.0%
GAATGCTAGATTAAAGGTTG+AGG - chr4_4:55118465-55118484 Msa0688860:intron 35.0%
AGTAAACGATGTAGATCTAG+TGG - chr4_4:55118678-55118697 Msa0688860:intron 35.0%
GTAAACGATGTAGATCTAGT+GGG - chr4_4:55118679-55118698 Msa0688860:intron 35.0%
ATCTACACCTGCATTTGAAA+TGG - chr4_4:55118726-55118745 Msa0688860:intron 35.0%
! TCTACACCTGCATTTGAAAT+GGG - chr4_4:55118727-55118746 Msa0688860:intron 35.0%
ATTGGTGGAAATCCATAAAG+GGG + chr4_4:55118914-55118933 None:intergenic 35.0%
CATTGGTGGAAATCCATAAA+GGG + chr4_4:55118915-55118934 None:intergenic 35.0%
TCATTGGTGGAAATCCATAA+AGG + chr4_4:55118916-55118935 None:intergenic 35.0%
! GTTTAGAATCTCAGTGTCAT+TGG + chr4_4:55118932-55118951 None:intergenic 35.0%
TAAACGAAGTTGAATACCCT+AGG - chr4_4:55118947-55118966 Msa0688860:intron 35.0%
AAACGAAGTTGAATACCCTA+GGG - chr4_4:55118948-55118967 Msa0688860:intron 35.0%
CATTGATATCCTTATGGATG+TGG - chr4_4:55119056-55119075 Msa0688860:intron 35.0%
!!! GGCAATGATTTTAGAGTCAA+TGG - chr4_4:55119208-55119227 Msa0688860:intron 35.0%
CTTGAGATGACTTAAAAGCA+TGG - chr4_4:55119560-55119579 Msa0688860:CDS 35.0%
! TTAAAAGCATGGACCAAAAG+TGG - chr4_4:55119571-55119590 Msa0688860:CDS 35.0%
TCTAACACAACCACACAAAA+CGG - chr4_4:55119730-55119749 Msa0688860:intron 35.0%
GATCAAGTGTTTATAAGTGG+GGG + chr4_4:55119775-55119794 None:intergenic 35.0%
GTCAACCACAAATTCTTAGA+TGG + chr4_4:55119831-55119850 None:intergenic 35.0%
! AATCAGCTGACATCTGAAAT+AGG + chr4_4:55120100-55120119 None:intergenic 35.0%
!! TATTCTAAGAAGCACCAAGA+AGG - chr4_4:55120170-55120189 Msa0688860:intron 35.0%
!! ATTCTAAGAAGCACCAAGAA+GGG - chr4_4:55120171-55120190 Msa0688860:intron 35.0%
ACTACCAAATGGTTGTTCAA+AGG - chr4_4:55120286-55120305 Msa0688860:intron 35.0%
CATACCTTTGAACAACCATT+TGG + chr4_4:55120293-55120312 None:intergenic 35.0%
! TAAATACATGGTTTGCATGG+TGG + chr4_4:55120398-55120417 None:intergenic 35.0%
TTCACATTGTCTACCTAATG+AGG + chr4_4:55120619-55120638 None:intergenic 35.0%
TCCAAACAAAAAACCGTAGA+GGG + chr4_4:55121152-55121171 None:intergenic 35.0%
ATCCAAACAAAAAACCGTAG+AGG + chr4_4:55121153-55121172 None:intergenic 35.0%
TCAGAACATATACGACATCA+TGG - chr4_4:55121217-55121236 Msa0688860:intron 35.0%
CACATATATGCAATACACAG+TGG - chr4_4:55121464-55121483 Msa0688860:intron 35.0%
ACAGTGGTAAATAGTCTTCA+AGG - chr4_4:55121480-55121499 Msa0688860:intron 35.0%
TGGTAAATAGTCTTCAAGGA+AGG - chr4_4:55121484-55121503 Msa0688860:intron 35.0%
ATCTGATTGTGACGATGTAA+GGG - chr4_4:55121599-55121618 Msa0688860:intron 35.0%
GTCATGACCAAAACAAGTAT+TGG - chr4_4:55121621-55121640 Msa0688860:intron 35.0%
! AGGTTCACCAATACTTGTTT+TGG + chr4_4:55121631-55121650 None:intergenic 35.0%
!! AAAACAAGTATTGGTGAACC+TGG - chr4_4:55121630-55121649 Msa0688860:intron 35.0%
ACACTAAGAACAATACCAGT+AGG + chr4_4:55121660-55121679 None:intergenic 35.0%
ACTGGTATTGTTCTTAGTGT+TGG - chr4_4:55121660-55121679 Msa0688860:intron 35.0%
AGAAAATCAAAAAGCCTCCT+TGG + chr4_4:55121711-55121730 None:intergenic 35.0%
!!! AGGAGGCTTTTTGATTTTCT+TGG - chr4_4:55121711-55121730 Msa0688860:intron 35.0%
! TCATTTCATTTGCTAGGACA+TGG + chr4_4:55121858-55121877 None:intergenic 35.0%
GAATCTCAACAAAATCACAG+GGG - chr4_4:55121876-55121895 Msa0688860:intron 35.0%
! TATTTGACCTTTTCCCATCA+TGG + chr4_4:55122007-55122026 None:intergenic 35.0%
AGAAACATTCATCCTCCTAT+TGG - chr4_4:55122526-55122545 Msa0688860:CDS 35.0%
GAAACATTCATCCTCCTATT+GGG - chr4_4:55122527-55122546 Msa0688860:CDS 35.0%
! TCTAACACCCACTCTTTTAT+TGG + chr4_4:55122660-55122679 None:intergenic 35.0%
CGAAATGAAGGATTTAGTGA+AGG + chr4_4:55123015-55123034 None:intergenic 35.0%
ACCGTTCTTTATCGAAATGA+AGG + chr4_4:55123027-55123046 None:intergenic 35.0%
ATAGAACAAACTGGTTGTAC+CGG - chr4_4:55123215-55123234 Msa0688860:intron 35.0%
GCTGAATTAACAGTTATAGC+CGG + chr4_4:55123237-55123256 None:intergenic 35.0%
! TAATTCAGCTTTTCCCATCA+TGG - chr4_4:55123248-55123267 Msa0688860:intron 35.0%
! AATTCAGCTTTTCCCATCAT+GGG - chr4_4:55123249-55123268 Msa0688860:intron 35.0%
! GGTTCTTAATTTTCCCATGA+TGG + chr4_4:55123265-55123284 None:intergenic 35.0%
! CAATATAAGGGTGCAAGTTA+TGG + chr4_4:55123295-55123314 None:intergenic 35.0%
GAAATGGAACACATAACACA+TGG - chr4_4:55123410-55123429 Msa0688860:intron 35.0%
TTCATGTCAGCGTAAGTAAT+TGG - chr4_4:55123462-55123481 Msa0688860:intron 35.0%
!! CAGTTACCAAAAGGTACTTT+AGG + chr4_4:55123575-55123594 None:intergenic 35.0%
TTGCGACCAAAATAATATGG+TGG - chr4_4:55123617-55123636 Msa0688860:intron 35.0%
!! GAAGCACCACCATATTATTT+TGG + chr4_4:55123626-55123645 None:intergenic 35.0%
! GTCACATGTTATTTATGCTC+CGG - chr4_4:55123671-55123690 Msa0688860:intron 35.0%
! ATTTATGCTCCGGTTGATAT+TGG - chr4_4:55123681-55123700 Msa0688860:intron 35.0%
TTCACAGAACCAATATCAAC+CGG + chr4_4:55123693-55123712 None:intergenic 35.0%
GTGAATGCAATCTTAAATGG+TGG - chr4_4:55123708-55123727 Msa0688860:intron 35.0%
GGAAGCAAAGCAACAAAATT+TGG + chr4_4:55123738-55123757 None:intergenic 35.0%
!!! TTTTGTTATTCTCCCCGATA+GGG - chr4_4:55123764-55123783 Msa0688860:CDS 35.0%
ATAATTAAGCATAGGTCCTG+TGG + chr4_4:55123802-55123821 None:intergenic 35.0%
!! TGTTGTTGGTGTACTGATTG+AGG + chr4_4:55117379-55117398 None:intergenic 40.0%
GCATGTCTCGAAATTGTTGT+TGG + chr4_4:55117393-55117412 None:intergenic 40.0%
!! CTTCTTTGTTGATGGTGGTT+AGG + chr4_4:55117511-55117530 None:intergenic 40.0%
GTTTCCTTTGCTTGCCATTA+GGG + chr4_4:55117714-55117733 None:intergenic 40.0%
TGTTTCCTTTGCTTGCCATT+AGG + chr4_4:55117715-55117734 None:intergenic 40.0%
TGGCAAGCAAAGGAAACAAT+TGG - chr4_4:55117717-55117736 Msa0688860:intron 40.0%
GGCAAGCAAAGGAAACAATT+GGG - chr4_4:55117718-55117737 Msa0688860:intron 40.0%
! AAACAATTGGGTTGTGAGCT+AGG - chr4_4:55117730-55117749 Msa0688860:intron 40.0%
!! AACCAGAACTTGATTTGCGT+AGG + chr4_4:55117763-55117782 None:intergenic 40.0%
GCGCAACCAAATTAAGGTAA+AGG - chr4_4:55117792-55117811 Msa0688860:intron 40.0%
TGAACTTAACTCAGCTGGTA+TGG + chr4_4:55118088-55118107 None:intergenic 40.0%
TATATGCATGCAGACACAAC+AGG - chr4_4:55118285-55118304 Msa0688860:intron 40.0%
TTATATACACAGTGCACTGG+AGG + chr4_4:55118563-55118582 None:intergenic 40.0%
!! AACGATTGTAGAACTTGCTG+TGG - chr4_4:55118849-55118868 Msa0688860:intron 40.0%
!! AGAACTTGCTGTGGTTTCTA+TGG - chr4_4:55118858-55118877 Msa0688860:intron 40.0%
CTCACAATGTTAACTCTTGC+TGG - chr4_4:55118886-55118905 Msa0688860:intron 40.0%
! TAGAATCTCAGTGTCATTGG+TGG + chr4_4:55118929-55118948 None:intergenic 40.0%
!! GACTTTTGGGAAAAACCCTA+GGG + chr4_4:55118966-55118985 None:intergenic 40.0%
GAATTTAACCCCGTGAGTTT+CGG + chr4_4:55118988-55119007 None:intergenic 40.0%
TGTTACTCACCACATCCATA+AGG + chr4_4:55119068-55119087 None:intergenic 40.0%
ACACTTGAAGTTCTATCACC+TGG - chr4_4:55119267-55119286 Msa0688860:intron 40.0%
ATACAATGGAGCTCTACAAG+TGG - chr4_4:55119302-55119321 Msa0688860:intron 40.0%
! AAAGTCTGACATTGGTTGAG+AGG + chr4_4:55119968-55119987 None:intergenic 40.0%
!! TCAGATGTCAGCTGATTTTC+AGG - chr4_4:55120103-55120122 Msa0688860:intron 40.0%
! ACGAAATAGTTTTCACGAGC+AGG + chr4_4:55120146-55120165 None:intergenic 40.0%
ATGTACTACTACTTGGTTGC+AGG + chr4_4:55120229-55120248 None:intergenic 40.0%
CGTGTCAATGTACTACTACT+TGG + chr4_4:55120236-55120255 None:intergenic 40.0%
!! ATAACTTCTGGTCTTGCCTT+TGG - chr4_4:55120576-55120595 Msa0688860:intron 40.0%
GTCTTCTACAGGTATGTTGT+TGG + chr4_4:55120661-55120680 None:intergenic 40.0%
ATACCTGTAGAAGACCATTG+TGG - chr4_4:55120666-55120685 Msa0688860:CDS 40.0%
!!! TCCCTCTACGGTTTTTTGTT+TGG - chr4_4:55121148-55121167 Msa0688860:CDS 40.0%
TCTGATAAATTCCCTCTACG+TGG + chr4_4:55121202-55121221 None:intergenic 40.0%
!! AAGGAAGAGTTTGCTGGATT+TGG - chr4_4:55121503-55121522 Msa0688860:intron 40.0%
!! GTATGTTTTTATGCTGCCGT+TGG - chr4_4:55121543-55121562 Msa0688860:intron 40.0%
CATCTGATTGTGACGATGTA+AGG - chr4_4:55121598-55121617 Msa0688860:intron 40.0%
! TGGAACTTCTATTTGGCTTC+CGG - chr4_4:55121680-55121699 Msa0688860:intron 40.0%
!!! TTTTTTACTTAGACAGGCCG+CGG + chr4_4:55122207-55122226 None:intergenic 40.0%
!! TTTTTGAGCAACCCAATAGG+AGG + chr4_4:55122541-55122560 None:intergenic 40.0%
TCACATGAGTTTCACCCAAT+AGG + chr4_4:55122579-55122598 None:intergenic 40.0%
AAGAACGGTATGTGTAGACT+CGG - chr4_4:55123038-55123057 Msa0688860:intron 40.0%
! ATAAGGGTGCAAGTTATGGT+GGG + chr4_4:55123291-55123310 None:intergenic 40.0%
! TATAAGGGTGCAAGTTATGG+TGG + chr4_4:55123292-55123311 None:intergenic 40.0%
ATAACACATGGTCGTGATCT+TGG - chr4_4:55123422-55123441 Msa0688860:intron 40.0%
GGGAGAATAACAAAACCAGA+GGG + chr4_4:55123759-55123778 None:intergenic 40.0%
!!! GTTTTGTTATTCTCCCCGAT+AGG - chr4_4:55123763-55123782 Msa0688860:CDS 40.0%
TCTACTCTTCTTGTTGGACT+TGG + chr4_4:55123876-55123895 None:intergenic 40.0%
!! CAATGCTACTTTGATCCGTT+TGG + chr4_4:55123943-55123962 None:intergenic 40.0%
CAAACGGATCAAAGTAGCAT+TGG - chr4_4:55123941-55123960 Msa0688860:CDS 40.0%
GTTAGGATCTTGGTCTCGAA+GGG + chr4_4:55117494-55117513 None:intergenic 45.0%
!! GTTGATGGTGGTTAGGATCT+TGG + chr4_4:55117504-55117523 None:intergenic 45.0%
TTTGCTTGCCATTAGGGAGA+GGG + chr4_4:55117708-55117727 None:intergenic 45.0%
CACCTACGCAAATCAAGTTC+TGG - chr4_4:55117758-55117777 Msa0688860:intron 45.0%
TAGGTCCTTGGTTCAAACTC+TGG + chr4_4:55118047-55118066 None:intergenic 45.0%
CATCGTGAACTTAACTCAGC+TGG + chr4_4:55118093-55118112 None:intergenic 45.0%
AGATTGAAGTGCGCACACTT+TGG - chr4_4:55118206-55118225 Msa0688860:intron 45.0%
CCACTTCCCATTTCAAATGC+AGG + chr4_4:55118736-55118755 None:intergenic 45.0%
! CCTGCATTTGAAATGGGAAG+TGG - chr4_4:55118733-55118752 Msa0688860:intron 45.0%
!! ACTTGCTGTGGTTTCTATGG+AGG - chr4_4:55118861-55118880 Msa0688860:intron 45.0%
!! GGACTTTTGGGAAAAACCCT+AGG + chr4_4:55118967-55118986 None:intergenic 45.0%
TCCCAAAAGTCCGAAACTCA+CGG - chr4_4:55118975-55118994 Msa0688860:intron 45.0%
! TTCTATCACCTGGAGTGTCA+GGG - chr4_4:55119277-55119296 Msa0688860:intron 45.0%
TTGTATTTCCCTGACACTCC+AGG + chr4_4:55119288-55119307 None:intergenic 45.0%
! GGAGTGTCAGGGAAATACAA+TGG - chr4_4:55119288-55119307 Msa0688860:intron 45.0%
! AACCACACAAAACGGACTTG+TGG - chr4_4:55119738-55119757 Msa0688860:intron 45.0%
! GGACTAGTGTTCAAAAGTGG+AGG + chr4_4:55119944-55119963 None:intergenic 45.0%
!! GGTGGACTAGTGTTCAAAAG+TGG + chr4_4:55119947-55119966 None:intergenic 45.0%
!!! TTTTCAGGTTCCTTCACCAC+TGG - chr4_4:55120118-55120137 Msa0688860:intron 45.0%
!! AGAAGCACCAAGAAGGGATA+TGG - chr4_4:55120177-55120196 Msa0688860:intron 45.0%
! GAAGCACCAAGAAGGGATAT+GGG - chr4_4:55120178-55120197 Msa0688860:intron 45.0%
ATGGGTAGAGCATGTAGAAG+TGG - chr4_4:55120512-55120531 Msa0688860:intron 45.0%
!! TTGCCTTTGGAGCTAAGAGA+TGG - chr4_4:55120589-55120608 Msa0688860:intron 45.0%
!! TGCCTTTGGAGCTAAGAGAT+GGG - chr4_4:55120590-55120609 Msa0688860:intron 45.0%
AAGAGATGGGTGACCTCATT+AGG - chr4_4:55120603-55120622 Msa0688860:intron 45.0%
ACACCACAATGGTCTTCTAC+AGG + chr4_4:55120672-55120691 None:intergenic 45.0%
AGTTTATTGGGCCACGTAGA+GGG - chr4_4:55121188-55121207 Msa0688860:intron 45.0%
TCAAGGAAGGAAGAGTTTGC+TGG - chr4_4:55121497-55121516 Msa0688860:intron 45.0%
ACTAGCTACAGAAGGACCAA+CGG + chr4_4:55121562-55121581 None:intergenic 45.0%
TCCTTCTGTAGCTAGTTGCT+GGG - chr4_4:55121566-55121585 Msa0688860:intron 45.0%
ACAATACCAGTAGGTGTTCC+AGG + chr4_4:55121651-55121670 None:intergenic 45.0%
AAAAGCCTCCTTGGAACAAC+CGG + chr4_4:55121702-55121721 None:intergenic 45.0%
GATGGCCTAGATGTGAGATT+GGG - chr4_4:55122053-55122072 Msa0688860:CDS 45.0%
AGGTACCCAATCTCACATCT+AGG + chr4_4:55122061-55122080 None:intergenic 45.0%
CATGAGTTTCACCCAATAGG+AGG + chr4_4:55122576-55122595 None:intergenic 45.0%
TCAATTCCGCGTGATTTCAC+CGG - chr4_4:55123067-55123086 Msa0688860:intron 45.0%
TTAATGCCGGTGAAATCACG+CGG + chr4_4:55123076-55123095 None:intergenic 45.0%
AGTGGGATGTTCTTTCCGTT+GGG - chr4_4:55123375-55123394 Msa0688860:intron 45.0%
!! TTTGTTGCTTTGCTTCCCTC+TGG - chr4_4:55123741-55123760 Msa0688860:CDS 45.0%
GGGGAGAATAACAAAACCAG+AGG + chr4_4:55123760-55123779 None:intergenic 45.0%
TTCTCAATTGTGCCCTATCG+GGG + chr4_4:55123779-55123798 None:intergenic 45.0%
GTTCTCAATTGTGCCCTATC+GGG + chr4_4:55123780-55123799 None:intergenic 45.0%
GGTTCTCAATTGTGCCCTAT+CGG + chr4_4:55123781-55123800 None:intergenic 45.0%
!! AAAAAAAAAAAAAAAAAAGT+GGG + chr4_4:55119911-55119930 None:intergenic 5.0%
!! TAAAAAAAAAAAAAAAAAAG+TGG + chr4_4:55119912-55119931 None:intergenic 5.0%
!!! CTTTTTTTTTTTTTTTTTTA+AGG - chr4_4:55119912-55119931 Msa0688860:intron 5.0%
!! AAAAAAAATAAAAAAATTGA+AGG + chr4_4:55120457-55120476 None:intergenic 5.0%
GGTTAGGATCTTGGTCTCGA+AGG + chr4_4:55117495-55117514 None:intergenic 50.0%
CTTTGCTTGCCATTAGGGAG+AGG + chr4_4:55117709-55117728 None:intergenic 50.0%
CTCTCCCTAATGGCAAGCAA+AGG - chr4_4:55117707-55117726 Msa0688860:intron 50.0%
TGTGATGGCAATGACCCCTT+AGG - chr4_4:55118793-55118812 Msa0688860:intron 50.0%
GTGATGGCAATGACCCCTTA+GGG - chr4_4:55118794-55118813 Msa0688860:intron 50.0%
GAATTGAGAGGGACCCTAAG+GGG + chr4_4:55118810-55118829 None:intergenic 50.0%
GGAATTGAGAGGGACCCTAA+GGG + chr4_4:55118811-55118830 None:intergenic 50.0%
AGGAATTGAGAGGGACCCTA+AGG + chr4_4:55118812-55118831 None:intergenic 50.0%
CTCTTGCTGGATCCCCTTTA+TGG - chr4_4:55118899-55118918 Msa0688860:intron 50.0%
! CCCGTGAGTTTCGGACTTTT+GGG + chr4_4:55118979-55118998 None:intergenic 50.0%
CCCAAAAGTCCGAAACTCAC+GGG - chr4_4:55118976-55118995 Msa0688860:intron 50.0%
CCAAAAGTCCGAAACTCACG+GGG - chr4_4:55118977-55118996 Msa0688860:intron 50.0%
! GTTCTATCACCTGGAGTGTC+AGG - chr4_4:55119276-55119295 Msa0688860:intron 50.0%
! CACCACAAGTCCGTTTTGTG+TGG + chr4_4:55119743-55119762 None:intergenic 50.0%
! GTCTGACATTGGTTGAGAGG+TGG + chr4_4:55119965-55119984 None:intergenic 50.0%
! TTTTCACGAGCAGGAACCAG+TGG + chr4_4:55120137-55120156 None:intergenic 50.0%
! GGCAGTGGTTGATGTTTCCT+TGG - chr4_4:55120199-55120218 Msa0688860:intron 50.0%
ACTTGGTTGCAGGTGATCCA+AGG + chr4_4:55120219-55120238 None:intergenic 50.0%
TGGCTGAGGTGGGAGATTTA+AGG + chr4_4:55120378-55120397 None:intergenic 50.0%
CACCCATCTCTTAGCTCCAA+AGG + chr4_4:55120595-55120614 None:intergenic 50.0%
CAGTTTATTGGGCCACGTAG+AGG - chr4_4:55121187-55121206 Msa0688860:intron 50.0%
GTCCTTCTGTAGCTAGTTGC+TGG - chr4_4:55121565-55121584 Msa0688860:intron 50.0%
TCCCAGCAACTAGCTACAGA+AGG + chr4_4:55121570-55121589 None:intergenic 50.0%
! TTTGGCTTCCGGTTGTTCCA+AGG - chr4_4:55121691-55121710 Msa0688860:intron 50.0%
GGATGGCCTAGATGTGAGAT+TGG - chr4_4:55122052-55122071 Msa0688860:CDS 50.0%
! GGTGCAAGTTATGGTGGGAA+GGG + chr4_4:55123286-55123305 None:intergenic 50.0%
CAGTGGGATGTTCTTTCCGT+TGG - chr4_4:55123374-55123393 Msa0688860:intron 50.0%
GTGGGATGTTCTTTCCGTTG+GGG - chr4_4:55123376-55123395 Msa0688860:intron 50.0%
TGGGATGTTCTTTCCGTTGG+GGG - chr4_4:55123377-55123396 Msa0688860:intron 50.0%
AGGGCACAATTGAGAACCAC+AGG - chr4_4:55123783-55123802 Msa0688860:CDS 50.0%
GAGCAATGCCCTCTCCCTAA+TGG - chr4_4:55117697-55117716 Msa0688860:intron 55.0%
GGTGGCCAGAGTTTGAACCA+AGG - chr4_4:55118039-55118058 Msa0688860:intron 55.0%
! CCCCGTGAGTTTCGGACTTT+TGG + chr4_4:55118980-55118999 None:intergenic 55.0%
CCACTGCCCATATCCCTTCT+TGG + chr4_4:55120187-55120206 None:intergenic 55.0%
CCAAGAAGGGATATGGGCAG+TGG - chr4_4:55120184-55120203 Msa0688860:intron 55.0%
TTGACACGAAGACGACCCTC+TGG - chr4_4:55120248-55120267 Msa0688860:intron 55.0%
GTTTGCATGGTGGCTGAGGT+GGG + chr4_4:55120388-55120407 None:intergenic 55.0%
! CATGGTTTGCATGGTGGCTG+AGG + chr4_4:55120392-55120411 None:intergenic 55.0%
GGTGAACCTGGAACACCTAC+TGG - chr4_4:55121642-55121661 Msa0688860:intron 55.0%
! GGGTGCAAGTTATGGTGGGA+AGG + chr4_4:55123287-55123306 None:intergenic 55.0%
CGAGCAGGAACCAGTGGTGA+AGG + chr4_4:55120131-55120150 None:intergenic 60.0%
GGTTTGCATGGTGGCTGAGG+TGG + chr4_4:55120389-55120408 None:intergenic 60.0%
GGCTTCCGGTTGTTCCAAGG+AGG - chr4_4:55121694-55121713 Msa0688860:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 55117325 55123980 55117325 ID=Msa0688860;Name=Msa0688860
chr4_4 mRNA 55117325 55123980 55117325 ID=Msa0688860-mRNA-1;Parent=Msa0688860;Name=Msa0688860-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|10|0|703
chr4_4 exon 55123730 55123980 55123730 ID=Msa0688860-mRNA-1:exon:14565;Parent=Msa0688860-mRNA-1
chr4_4 exon 55123498 55123615 55123498 ID=Msa0688860-mRNA-1:exon:14564;Parent=Msa0688860-mRNA-1
chr4_4 exon 55122819 55123007 55122819 ID=Msa0688860-mRNA-1:exon:14563;Parent=Msa0688860-mRNA-1
chr4_4 exon 55122228 55122650 55122228 ID=Msa0688860-mRNA-1:exon:14562;Parent=Msa0688860-mRNA-1
chr4_4 exon 55121982 55122083 55121982 ID=Msa0688860-mRNA-1:exon:14561;Parent=Msa0688860-mRNA-1
chr4_4 exon 55120998 55121198 55120998 ID=Msa0688860-mRNA-1:exon:14560;Parent=Msa0688860-mRNA-1
chr4_4 exon 55120618 55120798 55120618 ID=Msa0688860-mRNA-1:exon:14559;Parent=Msa0688860-mRNA-1
chr4_4 exon 55119550 55119728 55119550 ID=Msa0688860-mRNA-1:exon:14558;Parent=Msa0688860-mRNA-1
chr4_4 exon 55117833 55117928 55117833 ID=Msa0688860-mRNA-1:exon:14557;Parent=Msa0688860-mRNA-1
chr4_4 exon 55117325 55117696 55117325 ID=Msa0688860-mRNA-1:exon:14556;Parent=Msa0688860-mRNA-1
chr4_4 CDS 55123730 55123980 55123730 ID=Msa0688860-mRNA-1:cds;Parent=Msa0688860-mRNA-1
chr4_4 CDS 55123498 55123615 55123498 ID=Msa0688860-mRNA-1:cds;Parent=Msa0688860-mRNA-1
chr4_4 CDS 55122819 55123007 55122819 ID=Msa0688860-mRNA-1:cds;Parent=Msa0688860-mRNA-1
chr4_4 CDS 55122228 55122650 55122228 ID=Msa0688860-mRNA-1:cds;Parent=Msa0688860-mRNA-1
chr4_4 CDS 55121982 55122083 55121982 ID=Msa0688860-mRNA-1:cds;Parent=Msa0688860-mRNA-1
chr4_4 CDS 55120998 55121198 55120998 ID=Msa0688860-mRNA-1:cds;Parent=Msa0688860-mRNA-1
chr4_4 CDS 55120618 55120798 55120618 ID=Msa0688860-mRNA-1:cds;Parent=Msa0688860-mRNA-1
chr4_4 CDS 55119550 55119728 55119550 ID=Msa0688860-mRNA-1:cds;Parent=Msa0688860-mRNA-1
chr4_4 CDS 55117833 55117928 55117833 ID=Msa0688860-mRNA-1:cds;Parent=Msa0688860-mRNA-1
chr4_4 CDS 55117325 55117696 55117325 ID=Msa0688860-mRNA-1:cds;Parent=Msa0688860-mRNA-1
Gene Sequence

>Msa0688860

ATGGTTGAGGATGAACAACAAACAGTGTCACATCAAAATGTGGTTGATCATCCTCAATCAGTACACCAACAACAATTTCGAGACATGCCAATCAACATCACTTCTTCAATCGGTTATTTGGAAAGATGTAATCAGAACCAAAATTCTAGAAATGAAGCTCTTTCTTCCCTTCGAGACCAAGATCCTAACCACCATCAACAAAGAAGAAGTAACTTTCGACACTCACAAAAACAGATTCAAGAAATGGAATCGTTCTTCGAGCAATGCCCTCTCCCTAATGGCAAGCAAAGGAAACAATTGGGTTGTGAGCTAGGTCTTACACCTACGCAAATCAAGTTCTGGTTTCAAAACAAGCGCAACCAAATTAAGACACAACAGGAACTTCATCAAAATGATCTTTTGAGGGATGAGAATGAGAAGCTTCGTGCTGAAAATGAGATTTATAAGGGGGCACTAAAAGACTCTTTATGTCCAAATTGTACTGATCCAATTTCTACTGGTGAAATGTCCTCTAACGACAATCAACTTAGAATTGAGAATGCTAGATTAAAGGTTGAGATTGAAATGTTCACAGGAAAGTTAGTAAACGATGTAGATCTAGTGGGTTCCTCCTCTAAAATTGATCAAATATCTACACCTGCATTTGAAATGGGAAGTGGTAGTGATATCTCTTCAAGCATGATAGAAGAATTGTATTGTGATGGCAATGACCCCTTAGGGTCCCTCTCAATTCCTAATGATTTTGACAAAGCAACGATTGTAGAACTTGCTGTGGTTTCTATGGAGGAACTCACAATGTTAACTCTTGCTGGATCCCCTTTATGGATTTCCACCAATGACACTGAGATTCTAAACGAAGTTGAATACCCTAGGGTTTTTCCCAAAAGTCCGAAACTCACGGGGTTAAATTCTGAATCTTCAAGAGAATCGGTTATTGTTTCCATGAGTCATATTAATCTCATTGATATCCTTATGGATGTGAGTCAATGGTCAACTATGTTTCATGCGATTGTTTCAAAAGCATTGACACTTGAAGTTCTATCACCTGGAGTGTCAGGGAAATACAATGGAGCTCTACAAGTGATGTCAGCTGATTTTCAGGTTCCTTCACCACTGGTTCCTGCTCGTGAAAACTATTTCGTTAGATATTCTAAGAAGCACCAAGAAGGGATATGGGCAGTGGTTGATGTTTCCTTGGATCACCTGCAACCAAGTAGTAGTACATTGACACGAAGACGACCCTCTGGTTGTTTAATTCAAGAACTACCAAATGGTTGTTCAAAGGTTACATGGGTAGAGCATGTAGAAGTGGATGAAAACACAATAGTGTCAAATCCATTCTATAAATCTTTAATAACTTCTGGTCTTGCCTTTGGAGCTAAGAGATGGGTGACCTCATTAGGTAGACAATGTGAACGTCTTGCTTCTTCAATGACCAACAACATACCTGTAGAAGACCATTGTGCTAGTTGCTGGGAAGTGTTAACATCTGATTGTGACGATGTAAGGGTCATGACCAAAACAAGTATTGGTGAACCTGGAACACCTACTGGTATTGTTCTTAGTGTTGGAACTTCTATTTGGCTTCCGGTTGTTCCAAGGAGGCTTTTTGATTTTCTTGGAAATCAAAATTCAAGAAGTGAGTGGGATGTTCTTTCCGTTGGGGGTATAATTAAAGAAATGGAACACATAACACATGGTCGTGATCTTGGAAACTATGTCTCTTTATTTCATGTCAGCAGGGCTAATTGCGACCAAAATAATATGGTGGTGCTTCAAGACAATAACATTGATAGTACATGGTCACATGTTATTTATGCTCCGGTTGATATTGGTTCTGTGAATGCAATCTTAAATGGTGGTGATCCAAATTTTGTTGCTTTGCTTCCCTCTGGTTTTGTTATTCTCCCCGATAGGGCACAATTGAGAACCACAGGACCTATGCTTAATTATGTTGAACTTGGAGGTTGTCTATTGACAATTTCATTTCAATTTTTAGTTGATCCAAGTCCAACAAGAAGAGTAGAAAATGACTCAATAGAATTTGCTGTCAAATTAGTTAAGAACACAACCAAACGGATCAAAGTAGCATTGGTCGATAGCAACACCTAA
Protein sequence

>Msa0688860

MVEDEQQTVSHQNVVDHPQSVHQQQFRDMPINITSSIGYLERCNQNQNSRNEALSSLRDQDPNHHQQRRSNFRHSQKQIQEMESFFEQCPLPNGKQRKQLGCELGLTPTQIKFWFQNKRNQIKTQQELHQNDLLRDENEKLRAENEIYKGALKDSLCPNCTDPISTGEMSSNDNQLRIENARLKVEIEMFTGKLVNDVDLVGSSSKIDQISTPAFEMGSGSDISSSMIEELYCDGNDPLGSLSIPNDFDKATIVELAVVSMEELTMLTLAGSPLWISTNDTEILNEVEYPRVFPKSPKLTGLNSESSRESVIVSMSHINLIDILMDVSQWSTMFHAIVSKALTLEVLSPGVSGKYNGALQVMSADFQVPSPLVPARENYFVRYSKKHQEGIWAVVDVSLDHLQPSSSTLTRRRPSGCLIQELPNGCSKVTWVEHVEVDENTIVSNPFYKSLITSGLAFGAKRWVTSLGRQCERLASSMTNNIPVEDHCASCWEVLTSDCDDVRVMTKTSIGEPGTPTGIVLSVGTSIWLPVVPRRLFDFLGNQNSRSEWDVLSVGGIIKEMEHITHGRDLGNYVSLFHVSRANCDQNNMVVLQDNNIDSTWSHVIYAPVDIGSVNAILNGGDPNFVALLPSGFVILPDRAQLRTTGPMLNYVELGGCLLTISFQFLVDPSPTRRVENDSIEFAVKLVKNTTKRIKVALVDSNT*