AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0689050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0689050 MtrunA17_Chr8g0341231 64.460 574 124 6 1 495 1 573 0.0 691
Msa0689050 MtrunA17_Chr8g0340931 58.386 632 168 11 13 569 1 612 0.0 681
Msa0689050 MtrunA17_Chr8g0340891 58.852 627 168 13 12 569 5 610 0.0 679
Msa0689050 MtrunA17_Chr8g0340881 58.703 632 167 12 12 569 5 616 0.0 678
Msa0689050 MtrunA17_Chr8g0340911 57.325 628 178 10 12 569 5 612 0.0 664
Msa0689050 MtrunA17_Chr8g0341011 57.369 631 176 11 12 569 5 615 0.0 652
Msa0689050 MtrunA17_Chr8g0347661 57.460 630 179 8 12 569 5 617 0.0 648
Msa0689050 MtrunA17_Chr8g0341151 56.916 629 176 11 12 569 1 605 0.0 637
Msa0689050 MtrunA17_Chr8g0340871 56.940 634 176 11 13 569 8 621 0.0 628
Msa0689050 MtrunA17_Chr8g0358831 56.414 608 191 13 1 569 1 573 0.0 606
Msa0689050 MtrunA17_Chr8g0340941 56.307 547 154 10 18 496 3 532 0.0 564
Msa0689050 MtrunA17_Chr8g0341141 58.511 470 148 8 13 437 1 468 1.07e-175 506
Msa0689050 MtrunA17_Chr8g0341351 66.007 303 100 2 12 311 14 316 1.47e-131 390
Msa0689050 MtrunA17_Chr2g0330591 37.850 642 306 16 12 576 1 626 1.58e-124 387
Msa0689050 MtrunA17_Chr8g0341061 37.075 677 275 20 11 569 16 659 2.35e-115 360
Msa0689050 MtrunA17_Chr6g0487571 36.785 647 302 13 13 576 1 623 1.31e-114 362
Msa0689050 MtrunA17_Chr8g0341101 38.498 639 256 20 37 569 55 662 1.90e-111 354
Msa0689050 MtrunA17_Chr8g0340961 53.602 347 119 9 13 354 1 310 4.21e-111 335
Msa0689050 MtrunA17_Chr8g0341271 69.397 232 69 2 84 314 6 236 5.15e-108 326
Msa0689050 MtrunA17_Chr8g0341091 34.229 558 246 16 37 497 52 585 3.48e-79 261
Msa0689050 MtrunA17_Chr8g0341111 34.271 569 245 17 36 569 51 525 9.80e-72 245
Msa0689050 MtrunA17_Chr6g0487561 43.894 303 157 5 19 311 16 315 3.55e-70 231
Msa0689050 MtrunA17_Chr8g0341201 74.830 147 34 1 110 256 23 166 2.92e-67 216
Msa0689050 MtrunA17_Chr7g0263591 28.816 642 331 24 36 570 28 650 3.74e-54 197
Msa0689050 MtrunA17_Chr1g0181731 29.154 638 324 28 40 569 26 643 5.85e-54 197
Msa0689050 MtrunA17_Chr2g0330611 43.578 218 112 4 12 223 1 213 5.13e-49 170
Msa0689050 MtrunA17_Chr6g0479311 28.155 515 286 17 41 488 26 523 7.55e-45 166
Msa0689050 MtrunA17_Chr3g0123141 25.266 657 337 22 41 570 25 654 6.51e-44 167
Msa0689050 MtrunA17_Chr8g0340971 58.451 142 35 3 435 569 11 135 9.27e-41 149
Msa0689050 MtrunA17_Chr5g0423881 36.059 269 151 8 39 292 61 323 4.73e-38 145
Msa0689050 MtrunA17_Chr8g0341361 38.618 246 109 5 367 576 1 240 5.79e-38 146
Msa0689050 MtrunA17_Chr8g0341181 66.327 98 28 1 340 437 3 95 2.66e-37 134
Msa0689050 MtrunA17_Chr8g0341261 53.285 137 25 2 340 437 19 155 3.12e-37 135
Msa0689050 MtrunA17_Chr5g0411631 27.190 662 351 29 11 569 8 641 4.44e-36 144
Msa0689050 MtrunA17_Chr7g0236881 27.011 659 332 31 38 569 24 660 5.68e-36 144
Msa0689050 MtrunA17_Chr8g0341171 57.500 120 31 2 438 554 14 116 1.56e-33 125
Msa0689050 MtrunA17_Chr8g0341221 72.619 84 17 2 487 569 5 83 3.53e-32 123
Msa0689050 MtrunA17_Chr5g0423891 42.632 190 92 4 386 570 32 209 2.08e-31 127
Msa0689050 MtrunA17_Chr8g0340951 81.690 71 13 0 499 569 18 88 9.59e-31 119
Msa0689050 MtrunA17_Chr8g0341081 81.690 71 13 0 499 569 23 93 5.18e-30 120
Msa0689050 MtrunA17_Chr8g0341131 88.889 63 7 0 507 569 1 63 7.06e-30 115
Msa0689050 MtrunA17_Chr8g0341251 80.282 71 14 0 499 569 24 94 1.22e-28 116
Msa0689050 MtrunA17_Chr1g0205741 26.897 435 245 23 40 422 25 438 1.15e-24 107
Msa0689050 MtrunA17_Chr2g0330621 29.442 197 95 4 252 408 11 203 1.31e-21 93.2
Msa0689050 MtrunA17_Chr5g0423871 39.850 133 52 4 330 437 37 166 1.42e-18 84.3
Msa0689050 MtrunA17_Chr1g0198681 22.876 459 261 17 44 428 40 479 4.96e-18 87.8
Msa0689050 MtrunA17_Chr7g0241921 33.508 191 115 7 383 568 551 734 1.70e-16 83.6
Msa0689050 MtrunA17_Chr2g0330631 39.850 133 67 4 441 569 9 132 1.75e-16 79.7
Msa0689050 MtrunA17_Chr5g0423861 50.000 72 36 0 497 568 1 72 2.35e-16 77.0
Msa0689050 MtrunA17_Chr2g0282601 23.367 398 237 14 89 425 75 465 2.56e-16 82.4
Msa0689050 MtrunA17_Chr8g0380941 30.570 193 119 6 380 568 568 749 5.65e-14 75.5
Msa0689050 MtrunA17_Chr4g0044931 29.560 159 95 7 44 191 7 159 2.02e-12 66.2
Msa0689050 MtrunA17_Chr3g0127671 28.780 205 126 6 380 568 568 768 2.76e-12 70.1
Msa0689050 MtrunA17_Chr4g0071221 45.977 87 43 2 487 569 498 584 4.01e-12 69.3
Msa0689050 MtrunA17_Chr4g0073471 28.070 228 124 10 380 569 116 341 8.30e-12 68.2
Msa0689050 MtrunA17_Chr7g0220741 27.386 241 113 9 380 569 123 352 2.59e-11 66.6
Msa0689050 MtrunA17_Chr3g0123891 28.959 221 118 9 383 570 119 333 3.44e-11 66.2
Msa0689050 MtrunA17_Chr6g0455651 45.946 74 39 1 498 570 89 162 3.91e-11 65.5
Msa0689050 MtrunA17_Chr1g0153851 40.449 89 47 1 487 569 6 94 4.13e-11 64.7
Msa0689050 MtrunA17_Chr8g0382101 26.772 254 135 9 362 570 83 330 4.19e-11 65.9
Msa0689050 MtrunA17_Chr2g0333091 56.140 57 24 1 514 570 482 537 9.25e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0689050 AT2G19210.1 37.170 643 300 16 18 576 5 627 5.49e-126 391
Msa0689050 AT2G19230.2 39.179 633 292 15 16 576 9 620 5.67e-126 391
Msa0689050 AT4G29990.2 37.898 628 303 14 24 576 10 625 4.89e-125 385
Msa0689050 AT1G05700.1 39.179 633 276 16 26 576 16 621 6.31e-125 388
Msa0689050 AT1G05700.2 38.556 651 286 18 26 576 16 652 1.21e-124 388
Msa0689050 AT4G29990.1 37.898 628 303 14 24 576 10 625 9.77e-124 385
Msa0689050 AT2G19230.1 39.117 634 292 16 16 576 9 621 1.15e-123 389
Msa0689050 AT1G51890.3 38.035 631 310 17 17 576 1 621 1.22e-121 376
Msa0689050 AT1G51890.1 38.035 631 310 17 17 576 1 621 2.73e-120 376
Msa0689050 AT1G51890.2 38.035 631 310 17 17 576 1 621 4.85e-120 376
Msa0689050 AT1G51790.3 38.951 629 298 16 23 576 11 628 3.71e-118 371
Msa0689050 AT1G51790.1 38.951 629 298 16 23 576 11 628 3.71e-118 371
Msa0689050 AT2G19190.1 35.906 635 326 12 13 576 1 625 2.51e-115 363
Msa0689050 AT1G51880.1 37.559 631 313 18 13 576 1 617 4.62e-114 360
Msa0689050 AT1G51880.2 37.441 633 315 18 11 576 17 635 4.90e-114 360
Msa0689050 AT1G51790.2 37.353 680 290 18 23 576 11 680 1.20e-113 360
Msa0689050 AT1G51880.3 37.129 641 314 18 11 576 17 643 1.48e-113 359
Msa0689050 AT1G51800.1 34.483 638 331 15 19 576 7 637 2.42e-111 353
Msa0689050 AT1G51860.1 36.378 646 318 17 13 576 1 635 3.33e-109 347
Msa0689050 AT1G51910.1 35.703 647 311 18 13 576 1 625 2.88e-108 345
Msa0689050 AT1G07560.1 35.981 617 302 16 34 575 23 621 2.10e-106 340
Msa0689050 AT3G46330.1 34.603 630 321 17 19 576 8 618 1.39e-105 338
Msa0689050 AT2G28990.2 34.509 652 314 17 15 576 1 629 4.74e-105 337
Msa0689050 AT2G28990.1 34.509 652 314 17 15 576 1 629 4.74e-105 337
Msa0689050 AT1G51870.2 35.826 642 319 18 17 576 4 634 7.83e-105 336
Msa0689050 AT1G51850.2 34.776 647 307 21 22 576 7 630 1.85e-102 330
Msa0689050 AT1G51805.1 34.000 650 297 18 27 576 12 629 1.79e-101 327
Msa0689050 AT3G46400.1 34.865 631 326 18 22 576 7 628 5.27e-101 326
Msa0689050 AT1G07550.1 34.189 623 315 18 25 576 13 611 5.43e-101 325
Msa0689050 AT3G21340.2 34.003 647 319 18 22 576 14 644 8.49e-101 321
Msa0689050 AT1G51820.1 34.869 651 314 21 15 576 1 630 1.24e-100 325
Msa0689050 AT3G21340.1 34.158 647 318 18 22 576 14 644 6.15e-99 320
Msa0689050 AT3G46330.2 35.314 606 325 17 19 576 8 594 1.01e-98 319
Msa0689050 AT2G04300.1 35.691 608 330 15 15 576 1 593 3.06e-98 318
Msa0689050 AT4G29450.1 34.142 618 306 15 21 558 4 600 1.92e-97 316
Msa0689050 AT2G04300.2 34.268 642 334 15 15 576 1 634 5.94e-97 315
Msa0689050 AT5G16900.2 34.658 629 311 19 31 576 14 625 1.16e-96 308
Msa0689050 AT1G51870.1 34.984 626 294 17 17 576 4 582 3.93e-96 312
Msa0689050 AT2G14510.1 33.070 632 325 17 19 576 7 614 8.69e-96 311
Msa0689050 AT2G14510.2 33.070 632 325 17 19 576 15 622 9.21e-96 311
Msa0689050 AT4G29180.2 33.824 612 305 15 22 555 9 598 1.92e-95 311
Msa0689050 AT1G51850.1 33.694 647 294 21 22 576 7 610 2.78e-95 310
Msa0689050 AT1G51805.2 32.769 650 281 18 27 576 12 605 4.21e-95 310
Msa0689050 AT5G16900.1 34.658 629 311 19 31 576 14 625 8.38e-95 309
Msa0689050 AT5G16900.3 34.658 629 311 19 31 576 14 625 8.38e-95 309
Msa0689050 AT3G46340.1 34.646 635 327 19 22 576 12 638 1.79e-94 308
Msa0689050 AT4G29180.3 33.662 609 307 15 22 555 9 595 2.67e-94 308
Msa0689050 AT4G20450.1 33.333 657 321 18 17 576 7 643 7.73e-94 307
Msa0689050 AT4G20450.2 33.333 657 321 18 17 576 7 643 8.05e-94 306
Msa0689050 AT5G59650.1 34.603 630 323 16 25 576 13 631 1.59e-93 306
Msa0689050 AT2G29000.1 34.073 631 322 18 19 576 8 617 2.31e-93 305
Msa0689050 AT5G59650.2 34.326 638 322 16 25 576 13 639 8.83e-93 304
Msa0689050 AT2G14440.1 32.864 639 330 17 13 576 1 615 1.51e-92 303
Msa0689050 AT5G59680.1 34.865 631 307 19 32 576 20 632 8.60e-92 301
Msa0689050 AT3G46420.1 35.276 635 288 16 13 576 1 583 9.67e-92 300
Msa0689050 AT4G29180.1 33.904 643 316 16 22 576 9 630 2.08e-91 301
Msa0689050 AT5G59670.2 32.623 610 340 18 29 576 16 616 1.38e-90 298
Msa0689050 AT5G59670.1 32.623 610 340 18 29 576 16 616 1.38e-90 298
Msa0689050 AT1G49100.1 32.921 647 319 21 25 576 7 633 8.26e-90 296
Msa0689050 AT1G51890.4 32.217 627 288 19 17 576 1 557 1.32e-78 265
Msa0689050 AT3G46370.2 32.353 578 255 17 96 576 1 539 6.81e-75 254
Msa0689050 AT3G46370.1 32.353 578 255 17 96 576 1 539 6.81e-75 254
Msa0689050 AT2G28960.2 34.442 511 242 18 18 451 7 501 3.14e-70 243
Msa0689050 AT2G28960.2 47.887 71 37 0 506 576 555 625 1.80e-13 73.9
Msa0689050 AT2G28970.2 33.852 514 227 15 151 576 8 496 1.26e-69 239
Msa0689050 AT1G51810.1 32.824 524 245 21 138 576 1 502 7.77e-67 231
Msa0689050 AT3G46350.1 32.207 444 256 9 19 454 8 414 3.27e-66 223
Msa0689050 AT5G59660.3 29.952 621 282 22 20 569 20 558 2.57e-61 218
Msa0689050 AT1G51860.2 32.290 511 240 17 152 576 1 491 7.09e-60 212
Msa0689050 AT5G59660.1 29.919 615 287 22 20 569 20 555 2.15e-59 212
Msa0689050 AT5G59660.2 31.066 544 260 19 89 569 42 533 1.18e-58 210
Msa0689050 AT2G28970.1 32.967 455 195 14 210 576 99 531 2.96e-55 200
Msa0689050 AT2G28970.1 40.566 106 50 5 15 109 1 104 4.20e-11 66.6
Msa0689050 AT5G16900.4 32.339 436 207 14 217 576 16 439 4.69e-50 184
Msa0689050 AT1G51830.1 30.524 439 215 16 217 576 11 438 7.07e-49 181
Msa0689050 AT1G51830.2 30.524 439 215 16 217 576 18 445 8.31e-49 181
Msa0689050 AT2G37050.4 27.301 641 339 25 40 570 27 650 6.36e-48 178
Msa0689050 AT2G37050.2 27.187 640 340 25 40 570 27 649 9.85e-48 177
Msa0689050 AT2G37050.3 27.812 640 337 26 40 570 27 650 1.56e-47 179
Msa0689050 AT2G37050.1 27.700 639 338 26 40 570 27 649 2.54e-47 178
Msa0689050 AT1G51840.2 45.408 196 97 4 8 198 1 191 1.95e-43 154
Msa0689050 AT1G51840.5 45.408 196 97 4 8 198 1 191 1.95e-43 154
Msa0689050 AT1G51840.4 45.408 196 97 4 8 198 1 191 1.95e-43 154
Msa0689050 AT1G51840.3 45.408 196 97 4 8 198 1 191 1.95e-43 154
Msa0689050 AT1G51840.1 45.408 196 97 4 8 198 1 191 1.95e-43 154
Msa0689050 AT1G51890.5 31.445 353 172 10 290 576 1 349 1.66e-39 153
Msa0689050 AT1G67720.1 25.637 667 372 25 13 570 1 652 2.44e-39 154
Msa0689050 AT2G28960.1 31.081 370 171 14 153 451 13 369 3.32e-36 144
Msa0689050 AT2G28960.1 47.887 71 37 0 506 576 423 493 1.73e-13 73.9
Msa0689050 AT1G51820.2 35.018 277 129 8 343 576 100 368 8.75e-35 139
Msa0689050 AT5G48740.1 26.100 659 343 27 40 575 20 657 8.40e-34 137
Msa0689050 AT3G19230.1 27.400 500 290 24 40 485 22 502 7.00e-31 127
Msa0689050 AT3G46270.1 29.846 325 192 12 15 327 8 308 6.73e-30 123
Msa0689050 AT3G46270.2 32.692 260 156 9 15 265 16 265 8.17e-30 123
Msa0689050 AT3G46260.1 31.950 241 146 9 36 265 24 257 3.41e-24 105
Msa0689050 AT3G46280.1 29.114 316 191 12 12 313 1 297 5.38e-24 105
Msa0689050 AT3G05990.1 25.447 503 257 21 42 444 28 512 1.16e-23 105
Msa0689050 AT1G24485.1 29.617 287 180 10 27 307 18 288 1.64e-23 104
Msa0689050 AT1G24485.2 29.617 287 180 10 27 307 18 288 1.84e-23 104
Msa0689050 AT1G24485.4 29.592 294 185 10 20 307 11 288 1.87e-23 103
Msa0689050 AT1G24485.3 29.592 294 185 10 20 307 11 288 2.26e-23 104
Msa0689050 AT1G28340.1 22.963 405 230 13 89 425 75 465 1.68e-16 83.6
Msa0689050 AT3G46240.1 33.333 132 83 4 42 171 6 134 3.50e-13 72.4
Msa0689050 AT4G30520.1 31.553 206 126 7 379 569 144 349 4.45e-12 69.3
Msa0689050 AT2G23950.2 27.468 233 120 8 379 569 120 345 8.93e-12 68.2
Msa0689050 AT5G56890.1 50.000 60 28 1 512 569 709 768 9.19e-12 68.9
Msa0689050 AT2G23950.1 27.468 233 120 8 379 569 120 345 1.27e-11 67.8
Msa0689050 AT5G54590.1 53.571 56 26 0 514 569 103 158 8.25e-11 63.2

Find 166 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACAATTTGATCTTCATTT+TGG 0.139840 4_4:-55873074 Msa0689050:CDS
ACATCAAATACCAGATTTAA+TGG 0.162723 4_4:-55872417 Msa0689050:CDS
GATAACTTCAATACTATTAT+TGG 0.163770 4_4:-55870057 Msa0689050:CDS
TACACCTGTATCAATGAATT+TGG 0.196745 4_4:+55873256 None:intergenic
GTGAGGAAGAACAACCTTTC+AGG 0.215775 4_4:-55870778 Msa0689050:CDS
CTCTTCAAGCGATGTGATTT+AGG 0.239361 4_4:-55872852 Msa0689050:CDS
GATTGTTCATCATAGAAATT+TGG 0.259780 4_4:-55869723 Msa0689050:three_prime_UTR
CCCTCAGTTCGGCCAATATT+TGG 0.264793 4_4:+55867913 None:intergenic
AATGAGGTTGAGAAACTTCC+TGG 0.265843 4_4:-55872465 Msa0689050:CDS
CATGCCAAGATAGCTGATTT+TGG 0.273027 4_4:-55869160 Msa0689050:three_prime_UTR
TGCATATGCAATGGACAAAA+AGG 0.274307 4_4:-55870298 Msa0689050:intron
AAAGGGGAACTTGCATTTAC+TGG 0.275307 4_4:+55872546 None:intergenic
ATTTGTCTGAACCATTTCTA+AGG 0.294439 4_4:+55867881 None:intergenic
AATTGGTGTCCTCACAGTTT+TGG 0.295767 4_4:-55873495 Msa0689050:CDS
ATTATTGGAGAAGGAGGATT+TGG 0.296072 4_4:-55870042 Msa0689050:CDS
TAGCTATGTGGTCAAATTCT+AGG 0.299671 4_4:-55870143 Msa0689050:CDS
ATCTCTACCGAAGTTAAATA+TGG 0.310551 4_4:+55869780 None:intergenic
ACTTACAAAGATGTGATTCT+TGG 0.311861 4_4:+55871435 None:intergenic
ATTATAAGTCGACACATTAA+TGG 0.312695 4_4:+55867545 None:intergenic
AATGCTCTAATTTCATTTCC+AGG 0.313912 4_4:+55872447 None:intergenic
TTTACTCTAGTTTCATTTCC+AGG 0.313963 4_4:+55872363 None:intergenic
ACACTTAATATCATTATAAA+TGG 0.315893 4_4:+55867780 None:intergenic
CGCAGTTGCGTCAGAAAATC+AGG 0.327821 4_4:+55870913 None:intergenic
GCCAATATTTGGCTCATGTC+TGG 0.334746 4_4:+55867924 None:intergenic
GAAATGGTTCAGACAAATAA+TGG 0.337690 4_4:-55867876 Msa0689050:three_prime_UTR
GTTCCCCTTTAAAATTTCAT+TGG 0.341830 4_4:-55872533 Msa0689050:CDS
CCTATGGGGTGGCTAGAAAT+TGG 0.347662 4_4:-55871530 Msa0689050:CDS
ACCTAGTGTGCCAGCAGGTT+GGG 0.356457 4_4:+55869093 None:intergenic
AGAAATTTGGTCTCTCTCAT+TGG 0.361407 4_4:-55869710 Msa0689050:three_prime_UTR
GCCAGACATGAGCCAAATAT+TGG 0.368142 4_4:-55867925 Msa0689050:three_prime_UTR
AAGAGTGATAATACTAAATC+AGG 0.374051 4_4:+55872870 None:intergenic
ATCAGAGCTACTTTCCATTA+CGG 0.376263 4_4:-55873122 Msa0689050:CDS
TGTCTTGTTAATACAGGAAA+AGG 0.378188 4_4:-55872957 Msa0689050:CDS
TTCAAATCTCTATGCATAAT+AGG 0.382227 4_4:+55869214 None:intergenic
TTTGGCCTAAGTAGAGCTTT+TGG 0.382458 4_4:-55869142 Msa0689050:three_prime_UTR
TTTAATAGATATCAGAGAAC+AGG 0.391706 4_4:-55868192 Msa0689050:intron
TTCCCCTTTAAAATTTCATT+GGG 0.396427 4_4:-55872532 Msa0689050:CDS
TGACAATTTCTTCATTCTGC+AGG 0.409035 4_4:+55870417 None:intergenic
AAACTAGAGTAAATACCATC+TGG 0.413062 4_4:-55872353 Msa0689050:CDS
GGATTTGGAAAAGTTTATCT+TGG 0.415026 4_4:-55870027 Msa0689050:CDS
TTCAATCTGAGGTTAGTCAT+TGG 0.417909 4_4:-55869933 Msa0689050:CDS
TCTGGCCTTTCTGTTGCGTT+TGG 0.418695 4_4:+55867942 None:intergenic
TAGGCCAAAATCAGCTATCT+TGG 0.419128 4_4:+55869156 None:intergenic
GGAGTGTCTTTCCTTAGAAA+TGG 0.419997 4_4:-55867892 Msa0689050:three_prime_UTR
TATCTCTCAAGGAGTTCAAT+TGG 0.423576 4_4:+55870748 None:intergenic
CACTAGGAAAGCTCCTCAAA+TGG 0.427366 4_4:+55873195 None:intergenic
GGATTGGAATATCTGCATAA+TGG 0.428255 4_4:-55869247 Msa0689050:three_prime_UTR
CTCAAATGGGTTACTTGTTG+TGG 0.434948 4_4:+55873209 None:intergenic
GGCCTAAACTGTAGTATAGA+TGG 0.435006 4_4:-55871468 Msa0689050:CDS
CTTACAAAGATGTGATTCTT+GGG 0.437760 4_4:+55871436 None:intergenic
GAAATTTGGTCTCTCTCATT+GGG 0.438134 4_4:-55869709 Msa0689050:three_prime_UTR
CTAAATTCACCAGGCAACCT+TGG 0.439600 4_4:+55868014 None:intergenic
AAAATATTCACATACTAGAA+TGG 0.440247 4_4:-55868082 Msa0689050:three_prime_UTR
ACTTACTTAATAAGTGTTGT+TGG 0.444483 4_4:+55869627 None:intergenic
ACACAGGCTCAAGATCAATC+AGG 0.447056 4_4:-55873467 Msa0689050:intron
ACAAACATCAAGAAGGCCTA+TGG 0.449015 4_4:-55871546 Msa0689050:CDS
GATGCCAAATTCATTGATAC+AGG 0.449231 4_4:-55873260 Msa0689050:CDS
CTTGTGAATTATCCAGTGAT+TGG 0.451909 4_4:-55872656 Msa0689050:CDS
AGGATTACAAGTAATGCAAT+TGG 0.453764 4_4:+55870340 None:intergenic
TATCACGAATCCATTAAATC+TGG 0.455626 4_4:+55872407 None:intergenic
CACAACAAGTAACCCATTTG+AGG 0.460185 4_4:-55873208 Msa0689050:CDS
GATTATCATAGTTTCCGTAA+TGG 0.462157 4_4:+55873108 None:intergenic
TGGGTTATTCCTTTAGTTGA+AGG 0.462306 4_4:-55868062 Msa0689050:three_prime_UTR
TTCAAAATGTTGTTGATCCA+AGG 0.462386 4_4:-55868031 Msa0689050:three_prime_UTR
ATATCAAACAATAGCCTAAA+CGG 0.462405 4_4:-55870943 Msa0689050:CDS
TTGTGGTGAGTGATGCATTC+GGG 0.463176 4_4:+55873024 None:intergenic
TCATTTCAGTTATAGAATTG+AGG 0.465509 4_4:-55872926 Msa0689050:CDS
AGCCATCTATACTACAGTTT+AGG 0.468329 4_4:+55871466 None:intergenic
GTTACTTGTTGTGGAATCAT+TGG 0.469383 4_4:+55873218 None:intergenic
TCATTTCCAGGATGAGTTGA+AGG 0.473168 4_4:+55872375 None:intergenic
CAACTATGTCTTGTTAATAC+AGG 0.476027 4_4:-55872963 Msa0689050:CDS
ATGATGTTTATGATCGCATA+TGG 0.476464 4_4:-55872683 Msa0689050:CDS
ATATCTCCTCCTTCAACTAA+AGG 0.479273 4_4:+55868053 None:intergenic
AATTCTATAACTGAAATGAA+TGG 0.490541 4_4:+55872930 None:intergenic
AAATATTCACATACTAGAAT+GGG 0.492571 4_4:-55868081 Msa0689050:three_prime_UTR
AGTGTAAATAGACGTGAAAT+TGG 0.494081 4_4:+55872490 None:intergenic
TTGATACAGGTGTAAGTAAG+AGG 0.496188 4_4:-55873247 Msa0689050:CDS
CCAAATATTGGCCGAACTGA+GGG 0.501000 4_4:-55867913 Msa0689050:three_prime_UTR
CAAGCAATAGTAAGAGCAGC+TGG 0.501598 4_4:-55868107 Msa0689050:three_prime_UTR
GGAAAGACACTCCCTCAGTT+CGG 0.503175 4_4:+55867902 None:intergenic
ATCATCAAAGCAAGGTTACA+AGG 0.505116 4_4:-55869959 Msa0689050:CDS
TTCAATACTATTATTGGAGA+AGG 0.505994 4_4:-55870051 Msa0689050:CDS
TTCAGCATGGAAAGCGGTAG+AGG 0.507765 4_4:-55867985 Msa0689050:three_prime_UTR
TCATCAAGTAATATGTTGGA+TGG 0.511278 4_4:+55869190 None:intergenic
GTGGTCAAATTCTAGGAAAG+AGG 0.511439 4_4:-55870136 Msa0689050:CDS
CAAACATCAAGAAGGCCTAT+GGG 0.513732 4_4:-55871545 Msa0689050:CDS
CTCCTTGAGAGATATCAAAC+AGG 0.513937 4_4:-55870739 Msa0689050:CDS
AATACTATTATTGGAGAAGG+AGG 0.514176 4_4:-55870048 Msa0689050:CDS
GATTCTGTCATACAAAGATC+AGG 0.514539 4_4:+55870439 None:intergenic
CCTGTACTCTCTGTTTGTGA+TGG 0.515010 4_4:+55872827 None:intergenic
GTTGTTGATCCAAGGTTGCC+TGG 0.516423 4_4:-55868023 Msa0689050:three_prime_UTR
GTTATCATCAAGTAATATGT+TGG 0.517130 4_4:+55869186 None:intergenic
GCTTAATCGTCTCCAATCAC+TGG 0.517191 4_4:+55872644 None:intergenic
ACTAGGAAAGCTCCTCAAAT+GGG 0.518382 4_4:+55873196 None:intergenic
TGAGGAAGAACAACCTTTCA+GGG 0.518415 4_4:-55870777 Msa0689050:CDS
TGAATTTGTTTCAGTAGCTA+CGG 0.518466 4_4:-55867835 Msa0689050:three_prime_UTR
AACCTAGTGTGCCAGCAGGT+TGG 0.518565 4_4:+55869092 None:intergenic
AAAATCCAAGAGGAAACAAA+AGG 0.523971 4_4:+55870320 None:intergenic
AGCATTGATTTATGAATACA+TGG 0.524548 4_4:-55869663 Msa0689050:three_prime_UTR
TGCATCACTCACCACAATCA+AGG 0.524925 4_4:-55873018 Msa0689050:CDS
TGGTTATCTAGCTAAAATAG+TGG 0.527365 4_4:+55867803 None:intergenic
ACAACAAGGACTAATGTACT+AGG 0.527388 4_4:+55867745 None:intergenic
AATCAGGTAAGGGACCGTTT+AGG 0.528946 4_4:+55870929 None:intergenic
CATATATCCACCCAACCTGC+TGG 0.531784 4_4:-55869103 Msa0689050:three_prime_UTR
ATTTATGAATACATGGCCAA+TGG 0.533355 4_4:-55869656 Msa0689050:three_prime_UTR
CCTTCCCACATATACTTCAC+TGG 0.533947 4_4:+55871489 None:intergenic
TTGCGTCAGAAAATCAGGTA+AGG 0.535337 4_4:+55870918 None:intergenic
ATAGACCCTTCAACTCATCC+TGG 0.538772 4_4:-55872381 Msa0689050:CDS
ACCCAACCTGCTGGCACACT+AGG 0.541044 4_4:-55869094 Msa0689050:three_prime_UTR
GTATAAATGCTGCTAATACA+AGG 0.542470 4_4:+55873557 None:intergenic
CATTTCCAGGATGAGTTGAA+GGG 0.543684 4_4:+55872376 None:intergenic
CGTTACCAAAAGCTCTACTT+AGG 0.544248 4_4:+55869137 None:intergenic
ATTCTATTTGTGTTAATCAG+TGG 0.547195 4_4:-55868134 Msa0689050:three_prime_UTR
TTACAAGGAATTTCAATCTG+AGG 0.547645 4_4:-55869944 Msa0689050:CDS
ATTGTGGTGAGTGATGCATT+CGG 0.551270 4_4:+55873023 None:intergenic
TGGTCAAATTCTAGGAAAGA+GGG 0.553256 4_4:-55870135 Msa0689050:CDS
CTTAATATCATTATAAATGG+TGG 0.556157 4_4:+55867783 None:intergenic
TCTTTATCACTGTAGCTATG+TGG 0.556640 4_4:-55870155 Msa0689050:intron
GCAGTGTTCATCACAACTGC+TGG 0.557737 4_4:+55872576 None:intergenic
CTTTCAACATCATCAAAGCA+AGG 0.561830 4_4:-55869967 Msa0689050:CDS
GTGTTGTTGGAGATTTCCAT+TGG 0.563010 4_4:+55869640 None:intergenic
GTCTTGTTAATACAGGAAAA+GGG 0.563644 4_4:-55872956 Msa0689050:CDS
GTGGTCCAGTGAAGTATATG+TGG 0.568669 4_4:-55871494 Msa0689050:CDS
TAACAATTTCTCACTCCACT+AGG 0.568731 4_4:+55873179 None:intergenic
AACTAGAGTAAATACCATCT+GGG 0.572168 4_4:-55872352 Msa0689050:CDS
ATATATTCCATATTTAACTT+CGG 0.576912 4_4:-55869787 Msa0689050:three_prime_UTR
GTTATTCCTTTAGTTGAAGG+AGG 0.577546 4_4:-55868059 Msa0689050:three_prime_UTR
CGTCTATTTACACTTCAATG+AGG 0.580139 4_4:-55872481 Msa0689050:CDS
GCCAAATATTGGCCGAACTG+AGG 0.580609 4_4:-55867914 Msa0689050:three_prime_UTR
GAATTGTTTCTAAATTCACC+AGG 0.584259 4_4:+55868005 None:intergenic
ATATACTTCACTGGACCACA+TGG 0.585212 4_4:+55871498 None:intergenic
TTTCACCAAACGCAACAGAA+AGG 0.585573 4_4:-55867947 Msa0689050:three_prime_UTR
CAATTGGAACTACCCCTGAA+AGG 0.586966 4_4:+55870764 None:intergenic
ACATAACCTAGTGTGCCAGC+AGG 0.591633 4_4:+55869088 None:intergenic
AACTACTACAATATGAGTGA+TGG 0.593201 4_4:-55867665 Msa0689050:three_prime_UTR
ATAACAGTAACTCAAAATGC+AGG 0.593950 4_4:-55869759 Msa0689050:three_prime_UTR
AACCTGTTTGATATCTCTCA+AGG 0.596438 4_4:+55870737 None:intergenic
CCAATTTCTAGCCACCCCAT+AGG 0.597027 4_4:+55871530 None:intergenic
CCATCACAAACAGAGAGTAC+AGG 0.600150 4_4:-55872827 Msa0689050:intron
TAGATCATAACTGTTAAATG+AGG 0.604631 4_4:+55872620 None:intergenic
TAGTGTGCCAGCAGGTTGGG+TGG 0.606478 4_4:+55869096 None:intergenic
GTAGACGATCTCCTTGATTG+TGG 0.606539 4_4:+55873007 None:intergenic
TGCGTCAGAAAATCAGGTAA+GGG 0.607360 4_4:+55870919 None:intergenic
AACTATCACAAACATCAAGA+AGG 0.609880 4_4:-55871553 Msa0689050:CDS
AAACAGGTTCACTATCATTG+AGG 0.616479 4_4:-55870723 Msa0689050:intron
CCAAAATGAAGATCAAATTG+TGG 0.622537 4_4:+55873074 None:intergenic
CAATCACTGGATAATTCACA+AGG 0.622545 4_4:+55872657 None:intergenic
AATTTAGAAACAATTCAGCA+TGG 0.623433 4_4:-55867998 Msa0689050:three_prime_UTR
CCAGTGAAGTATATGTGGGA+AGG 0.627373 4_4:-55871489 Msa0689050:CDS
CATTTGAGGAGCTTTCCTAG+TGG 0.646229 4_4:-55873194 Msa0689050:CDS
ATTGCAGTTGATGCAGCACA+TGG 0.647627 4_4:-55869340 Msa0689050:intron
AGTCAAACGTGATTCCCAGA+TGG 0.661118 4_4:+55872338 None:intergenic
CATCAAGAAGGCCTATGGGG+TGG 0.661822 4_4:-55871541 Msa0689050:CDS
TTGCATATGCAAAATCCAAG+AGG 0.664338 4_4:+55870310 None:intergenic
AAACATCAAGAAGGCCTATG+GGG 0.669879 4_4:-55871544 Msa0689050:CDS
AAACAATTCAGCATGGAAAG+CGG 0.677866 4_4:-55867991 Msa0689050:three_prime_UTR
AAATGAAGATCAAATTGTGG+TGG 0.680407 4_4:+55873077 None:intergenic
GGGGTGGCTAGAAATTGGCA+AGG 0.681909 4_4:-55871525 Msa0689050:CDS
GTTTGGTGAAATGCATGACA+TGG 0.692778 4_4:+55867959 None:intergenic
GGATTCATTAGCTTAGACTG+CGG 0.700922 4_4:-55873338 Msa0689050:CDS
GAGGAAGAACAACCTTTCAG+GGG 0.725894 4_4:-55870776 Msa0689050:CDS
TGGTCCAGTGAAGTATATGT+GGG 0.728754 4_4:-55871493 Msa0689050:CDS
CATGTGTTGGCAGAGATGTG+AGG 0.733455 4_4:-55870795 Msa0689050:intron
GTGTCAAAACCAAAACTGTG+AGG 0.740153 4_4:+55873486 None:intergenic
TTATTCTATAGAATACAACA+AGG 0.774818 4_4:+55867731 None:intergenic
AATTGGCAAGGAGATCCATG+TGG 0.779024 4_4:-55871513 Msa0689050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAAATGGATTTTTA+TGG + chr4_4:55869100-55869119 None:intergenic 10.0%
!!! ACTCTTTTTTTTTTTTTAAA+TGG + chr4_4:55869110-55869129 None:intergenic 10.0%
!! AATATATAGTAAAATATACA+CGG - chr4_4:55869995-55870014 Msa0689050:CDS 10.0%
!! TAATATTAATACTATTACTT+TGG + chr4_4:55871305-55871324 None:intergenic 10.0%
!!! TGAAAAAAGTGATTATTTTA+AGG - chr4_4:55869272-55869291 Msa0689050:intron 15.0%
!!! GAAAAAAGTGATTATTTTAA+GGG - chr4_4:55869273-55869292 Msa0689050:intron 15.0%
!! ATATATAGTAAAATATACAC+GGG - chr4_4:55869996-55870015 Msa0689050:CDS 15.0%
!! GATTATTATTCTTTCTTTAT+TGG - chr4_4:55870107-55870126 Msa0689050:CDS 15.0%
!!! ATATATTCCATATTTAACTT+CGG - chr4_4:55871336-55871355 Msa0689050:intron 15.0%
!!! AAAAAACTATTTTGTAAAGA+GGG + chr4_4:55871591-55871610 None:intergenic 15.0%
!!! TTGATGCAAATATTTTAAAA+TGG - chr4_4:55871745-55871764 Msa0689050:intron 15.0%
!!! AATTTTGTACACTATTAAAT+AGG + chr4_4:55872305-55872324 None:intergenic 15.0%
!!! AACTAAGTTTTATTATAGAT+TGG - chr4_4:55872773-55872792 Msa0689050:intron 15.0%
!!! ATTGGATGTAATTTTATTTT+AGG - chr4_4:55872791-55872810 Msa0689050:intron 15.0%
!! ACACTTAATATCATTATAAA+TGG + chr4_4:55873346-55873365 None:intergenic 15.0%
!!! CATTTTCTTTCGTTATTAAT+TGG - chr4_4:55867611-55867630 Msa0689050:three_prime_UTR 20.0%
!! TTCCTAAATTTATATGTATC+AGG - chr4_4:55867764-55867783 Msa0689050:three_prime_UTR 20.0%
!! ATCCTGATACATATAAATTT+AGG + chr4_4:55867769-55867788 None:intergenic 20.0%
!! AATTCTATAACTGAAATGAA+TGG + chr4_4:55868196-55868215 None:intergenic 20.0%
!!! TCTATTTCTAATAACCTAAA+GGG + chr4_4:55868944-55868963 None:intergenic 20.0%
!!! ATCTATTTCTAATAACCTAA+AGG + chr4_4:55868945-55868964 None:intergenic 20.0%
!!! TCATTTTTAAGTGTTTGTTT+AGG + chr4_4:55869255-55869274 None:intergenic 20.0%
!!! GGGAAAAAATAGATTTTTTT+TGG - chr4_4:55869293-55869312 Msa0689050:intron 20.0%
!!! AAAAAAAATCTGAAACAAAC+AGG - chr4_4:55869316-55869335 Msa0689050:intron 20.0%
!! TAAAAGAAAACAGTTCAATA+AGG + chr4_4:55869532-55869551 None:intergenic 20.0%
!! ATTTATGCATGGTTTATTTA+AGG + chr4_4:55869722-55869741 None:intergenic 20.0%
!!! CTTAAAAGTATATATGGAAA+TGG - chr4_4:55869766-55869785 Msa0689050:three_prime_UTR 20.0%
!! AATTTAGAAAAAATGAGATC+AGG + chr4_4:55869880-55869899 None:intergenic 20.0%
!! TATATAGTAAAATATACACG+GGG - chr4_4:55869997-55870016 Msa0689050:CDS 20.0%
!!! TTTGATATATCTCTGAAATT+AGG + chr4_4:55870168-55870187 None:intergenic 20.0%
!! TGAAATTACATTTGATTCAT+CGG + chr4_4:55870263-55870282 None:intergenic 20.0%
!!! TATTTGTAGCTTTTTCAAAT+GGG + chr4_4:55870475-55870494 None:intergenic 20.0%
!!! ATATTTGTAGCTTTTTCAAA+TGG + chr4_4:55870476-55870495 None:intergenic 20.0%
!! ATATGTCAATTTCTCAAATT+TGG - chr4_4:55870517-55870536 Msa0689050:intron 20.0%
!! ATATTAGATTCATCACTATT+AGG - chr4_4:55870540-55870559 Msa0689050:intron 20.0%
!! TATTAGATTCATCACTATTA+GGG - chr4_4:55870541-55870560 Msa0689050:intron 20.0%
!! AGACATTTATGCTAAAATAT+AGG + chr4_4:55870643-55870662 None:intergenic 20.0%
!!! CAAATTCTTTTTTACACTTT+GGG + chr4_4:55870757-55870776 None:intergenic 20.0%
!!! ACAAATTCTTTTTTACACTT+TGG + chr4_4:55870758-55870777 None:intergenic 20.0%
!! GATAACTTCAATACTATTAT+TGG - chr4_4:55871066-55871085 Msa0689050:intron 20.0%
!! ATTAATACTATTACTTTGGT+GGG + chr4_4:55871301-55871320 None:intergenic 20.0%
!! TATTAATACTATTACTTTGG+TGG + chr4_4:55871302-55871321 None:intergenic 20.0%
!!! CAAAAAACTATTTTGTAAAG+AGG + chr4_4:55871592-55871611 None:intergenic 20.0%
!!! CTCTTTACAAAATAGTTTTT+TGG - chr4_4:55871590-55871609 Msa0689050:intron 20.0%
!! ACAAATTAGTTCAATGTAAA+GGG + chr4_4:55871846-55871865 None:intergenic 20.0%
!! AACAAATTAGTTCAATGTAA+AGG + chr4_4:55871847-55871866 None:intergenic 20.0%
!!! AACTAATTTGTTAGATTTTC+AGG - chr4_4:55871855-55871874 Msa0689050:intron 20.0%
!!! AGGAAATTTTTGTTTTATAC+TGG + chr4_4:55872084-55872103 None:intergenic 20.0%
!!! AACTTTTTAAGGTTTAATTG+TGG + chr4_4:55872157-55872176 None:intergenic 20.0%
!! ACAATTAAACCTTAAAAAGT+TGG - chr4_4:55872156-55872175 Msa0689050:intron 20.0%
!!! TATGTTAAAAGTCTTGTATT+GGG + chr4_4:55872231-55872250 None:intergenic 20.0%
!!! TTTGTTTAGTTTACTTGTTT+TGG + chr4_4:55872395-55872414 None:intergenic 20.0%
!!! ACATAATTGGTTTATATGTT+AGG + chr4_4:55872589-55872608 None:intergenic 20.0%
!! AAATAGATGTTGCATTATTT+GGG + chr4_4:55872701-55872720 None:intergenic 20.0%
!! TAAATAGATGTTGCATTATT+TGG + chr4_4:55872702-55872721 None:intergenic 20.0%
!!! ATGAGCTTAATAAAACTTTT+CGG - chr4_4:55872835-55872854 Msa0689050:CDS 20.0%
!! AAAATATTCACATACTAGAA+TGG - chr4_4:55873041-55873060 Msa0689050:CDS 20.0%
!! AAATATTCACATACTAGAAT+GGG - chr4_4:55873042-55873061 Msa0689050:CDS 20.0%
!! CTTAATATCATTATAAATGG+TGG + chr4_4:55873343-55873362 None:intergenic 20.0%
!! TTATTCTATAGAATACAACA+AGG + chr4_4:55873395-55873414 None:intergenic 20.0%
!!! TAATTTTCTTCTAAACTATC+AGG - chr4_4:55873495-55873514 Msa0689050:CDS 20.0%
!! AGTTGTATGTAATCTTTTGA+TGG + chr4_4:55868145-55868164 None:intergenic 25.0%
! TCATTTCAGTTATAGAATTG+AGG - chr4_4:55868197-55868216 Msa0689050:intron 25.0%
! AAGAGTGATAATACTAAATC+AGG + chr4_4:55868256-55868275 None:intergenic 25.0%
! TAGATCATAACTGTTAAATG+AGG + chr4_4:55868506-55868525 None:intergenic 25.0%
!!! TTCCCCTTTAAAATTTCATT+GGG - chr4_4:55868591-55868610 Msa0689050:intron 25.0%
!!! ATCCCAATGAAATTTTAAAG+GGG + chr4_4:55868596-55868615 None:intergenic 25.0%
!! CATCCCAATGAAATTTTAAA+GGG + chr4_4:55868597-55868616 None:intergenic 25.0%
! ACATCAAATACCAGATTTAA+TGG - chr4_4:55868706-55868725 Msa0689050:intron 25.0%
! AAGAGTAATTTGATATCTTG+TGG + chr4_4:55868815-55868834 None:intergenic 25.0%
!!! AATGGATTTTTATGGATAGT+AGG + chr4_4:55869092-55869111 None:intergenic 25.0%
! TCAACGATATACTATATGTA+AGG - chr4_4:55869435-55869454 Msa0689050:intron 25.0%
!! GGATGTAGTATAAGAATTTT+TGG - chr4_4:55869460-55869479 Msa0689050:intron 25.0%
!!! CATATATACTTTTAAGTCTG+AGG + chr4_4:55869762-55869781 None:intergenic 25.0%
!! CTCAGACTTAAAAGTATATA+TGG - chr4_4:55869760-55869779 Msa0689050:three_prime_UTR 25.0%
!! ATAAATCTTATTTCGTTCGA+TGG - chr4_4:55870055-55870074 Msa0689050:CDS 25.0%
! ATATCAAACAATAGCCTAAA+CGG - chr4_4:55870180-55870199 Msa0689050:intron 25.0%
! CATATTTATTTGTCATGTGT+TGG - chr4_4:55870315-55870334 Msa0689050:CDS 25.0%
!!! TGTCATTTTTGTTTACAAAG+AGG - chr4_4:55870724-55870743 Msa0689050:CDS 25.0%
!!! GTCATTTTTGTTTACAAAGA+GGG - chr4_4:55870725-55870744 Msa0689050:CDS 25.0%
! ATGATCATTCAATTATTGAG+CGG + chr4_4:55870874-55870893 None:intergenic 25.0%
! TTCAATACTATTATTGGAGA+AGG - chr4_4:55871072-55871091 Msa0689050:intron 25.0%
! GATTGTTCATCATAGAAATT+TGG - chr4_4:55871400-55871419 Msa0689050:intron 25.0%
!!! AGCATTGATTTATGAATACA+TGG - chr4_4:55871460-55871479 Msa0689050:CDS 25.0%
!! ACTTACTTAATAAGTGTTGT+TGG + chr4_4:55871499-55871518 None:intergenic 25.0%
! CGTCAATAAAAATAAGATAG+AGG + chr4_4:55871618-55871637 None:intergenic 25.0%
! AAAAATAAGTTCTTCCAAGT+GGG + chr4_4:55871660-55871679 None:intergenic 25.0%
! TAAAAATAAGTTCTTCCAAG+TGG + chr4_4:55871661-55871680 None:intergenic 25.0%
!!! ATTTGTTAGATTTTCAGGAT+TGG - chr4_4:55871860-55871879 Msa0689050:intron 25.0%
! TTCAAATCTCTATGCATAAT+AGG + chr4_4:55871912-55871931 None:intergenic 25.0%
! GTTATCATCAAGTAATATGT+TGG + chr4_4:55871940-55871959 None:intergenic 25.0%
!! TCCTTGATTTCAATATTTTG+TGG - chr4_4:55872100-55872119 Msa0689050:intron 25.0%
!! TTCATCTAACCAACTTTTTA+AGG + chr4_4:55872168-55872187 None:intergenic 25.0%
!! GTATGTTAAAAGTCTTGTAT+TGG + chr4_4:55872232-55872251 None:intergenic 25.0%
! TTAATAACTAAAAGACGTTG+TGG + chr4_4:55872265-55872284 None:intergenic 25.0%
!!! TTTAGTTTACTTGTTTTGGA+TGG + chr4_4:55872391-55872410 None:intergenic 25.0%
! ACTGATAAAGTTATTCTTTC+TGG + chr4_4:55872616-55872635 None:intergenic 25.0%
!! TGAGCTTAATAAAACTTTTC+GGG - chr4_4:55872836-55872855 Msa0689050:CDS 25.0%
! TTTAATAGATATCAGAGAAC+AGG - chr4_4:55872931-55872950 Msa0689050:CDS 25.0%
! ATTCTATTTGTGTTAATCAG+TGG - chr4_4:55872989-55873008 Msa0689050:CDS 25.0%
! AATTTAGAAACAATTCAGCA+TGG - chr4_4:55873125-55873144 Msa0689050:CDS 25.0%
GTATAAATGCTGCTAATACA+AGG + chr4_4:55867569-55867588 None:intergenic 30.0%
! AAGATCAATCAGGTTTGTTT+AGG - chr4_4:55867666-55867685 Msa0689050:three_prime_UTR 30.0%
TACACCTGTATCAATGAATT+TGG + chr4_4:55867870-55867889 None:intergenic 30.0%
GATTATCATAGTTTCCGTAA+TGG + chr4_4:55868018-55868037 None:intergenic 30.0%
AAATGAAGATCAAATTGTGG+TGG + chr4_4:55868049-55868068 None:intergenic 30.0%
CCAAAATGAAGATCAAATTG+TGG + chr4_4:55868052-55868071 None:intergenic 30.0%
! CCACAATTTGATCTTCATTT+TGG - chr4_4:55868049-55868068 Msa0689050:three_prime_UTR 30.0%
! CAACTATGTCTTGTTAATAC+AGG - chr4_4:55868160-55868179 Msa0689050:three_prime_UTR 30.0%
! TGTCTTGTTAATACAGGAAA+AGG - chr4_4:55868166-55868185 Msa0689050:three_prime_UTR 30.0%
! GTCTTGTTAATACAGGAAAA+GGG - chr4_4:55868167-55868186 Msa0689050:three_prime_UTR 30.0%
GGTCAAAAAAATTGTCACTA+AGG + chr4_4:55868397-55868416 None:intergenic 30.0%
TTTGACCATATACAAACAAC+AGG - chr4_4:55868410-55868429 Msa0689050:intron 30.0%
! TTGTACCTGTTGTTTGTATA+TGG + chr4_4:55868418-55868437 None:intergenic 30.0%
ATGATGTTTATGATCGCATA+TGG - chr4_4:55868440-55868459 Msa0689050:intron 30.0%
!! GTTCCCCTTTAAAATTTCAT+TGG - chr4_4:55868590-55868609 Msa0689050:intron 30.0%
! GCATCCCAATGAAATTTTAA+AGG + chr4_4:55868598-55868617 None:intergenic 30.0%
AGTGTAAATAGACGTGAAAT+TGG + chr4_4:55868636-55868655 None:intergenic 30.0%
AATGCTCTAATTTCATTTCC+AGG + chr4_4:55868679-55868698 None:intergenic 30.0%
TATCACGAATCCATTAAATC+TGG + chr4_4:55868719-55868738 None:intergenic 30.0%
! TTTACTCTAGTTTCATTTCC+AGG + chr4_4:55868763-55868782 None:intergenic 30.0%
AAACTAGAGTAAATACCATC+TGG - chr4_4:55868770-55868789 Msa0689050:intron 30.0%
AACTAGAGTAAATACCATCT+GGG - chr4_4:55868771-55868790 Msa0689050:intron 30.0%
!! TGTAAATCTCAAAGGCATTT+AGG + chr4_4:55868870-55868889 None:intergenic 30.0%
!! AAATGCCTTTGAGATTTACA+AGG - chr4_4:55868870-55868889 Msa0689050:intron 30.0%
! TTTTGCCTTGTAAATCTCAA+AGG + chr4_4:55868878-55868897 None:intergenic 30.0%
AATAGATTAAGACCCTCTTA+AGG - chr4_4:55868958-55868977 Msa0689050:intron 30.0%
! TCCTAACAGCTTTTCATTTT+AGG - chr4_4:55869188-55869207 Msa0689050:three_prime_UTR 30.0%
! CCTAACAGCTTTTCATTTTA+GGG - chr4_4:55869189-55869208 Msa0689050:three_prime_UTR 30.0%
GTATATCGTTGACAAAATCA+CGG + chr4_4:55869427-55869446 None:intergenic 30.0%
CGATATACTATATGTAAGGA+AGG - chr4_4:55869439-55869458 Msa0689050:intron 30.0%
!!! AGAATTTTTGGTGTCATTTG+TGG - chr4_4:55869472-55869491 Msa0689050:intron 30.0%
AACTATCACAAACATCAAGA+AGG - chr4_4:55869570-55869589 Msa0689050:intron 30.0%
CTTACAAAGATGTGATTCTT+GGG + chr4_4:55869690-55869709 None:intergenic 30.0%
ACTTACAAAGATGTGATTCT+TGG + chr4_4:55869691-55869710 None:intergenic 30.0%
GAAGTTCTTGAATTTATGCA+TGG + chr4_4:55869733-55869752 None:intergenic 30.0%
ACAAATATGCTCAATACTCA+AGG - chr4_4:55870488-55870507 Msa0689050:intron 30.0%
ATTCATCACTATTAGGGAAT+TGG - chr4_4:55870547-55870566 Msa0689050:intron 30.0%
TATGAATGAGGTAGAAAAGT+AGG - chr4_4:55870574-55870593 Msa0689050:intron 30.0%
ATGAATGAGGTAGAAAAGTA+GGG - chr4_4:55870575-55870594 Msa0689050:intron 30.0%
!! TAGCATAAATGTCTTGTTTC+AGG - chr4_4:55870649-55870668 Msa0689050:intron 30.0%
!! AGCATAAATGTCTTGTTTCA+GGG - chr4_4:55870650-55870669 Msa0689050:intron 30.0%
AGGATTACAAGTAATGCAAT+TGG + chr4_4:55870786-55870805 None:intergenic 30.0%
AAAATCCAAGAGGAAACAAA+AGG + chr4_4:55870806-55870825 None:intergenic 30.0%
AGTCATAATCAAATCGTTAG+TGG - chr4_4:55870907-55870926 Msa0689050:CDS 30.0%
GACTATATGCATCTAGTATT+AGG + chr4_4:55870939-55870958 None:intergenic 30.0%
AATACTATTATTGGAGAAGG+AGG - chr4_4:55871075-55871094 Msa0689050:intron 30.0%
GGATTTGGAAAAGTTTATCT+TGG - chr4_4:55871096-55871115 Msa0689050:intron 30.0%
TTACAAGGAATTTCAATCTG+AGG - chr4_4:55871179-55871198 Msa0689050:intron 30.0%
ATCTCTACCGAAGTTAAATA+TGG + chr4_4:55871346-55871365 None:intergenic 30.0%
ATAACAGTAACTCAAAATGC+AGG - chr4_4:55871364-55871383 Msa0689050:intron 30.0%
ATTTATGAATACATGGCCAA+TGG - chr4_4:55871467-55871486 Msa0689050:CDS 30.0%
!!! TCCTTATTTTTCATCGTTCA+CGG - chr4_4:55871558-55871577 Msa0689050:CDS 30.0%
!!! TTATTTTTATTGACGTCAGC+AGG - chr4_4:55871623-55871642 Msa0689050:intron 30.0%
AGGATAAATATTAACCCACT+TGG - chr4_4:55871643-55871662 Msa0689050:intron 30.0%
TCAAATGCATGCAAATAGAT+AGG + chr4_4:55871729-55871748 None:intergenic 30.0%
TCATCAAGTAATATGTTGGA+TGG + chr4_4:55871936-55871955 None:intergenic 30.0%
!!! TTTTGTTTTATACTGGCATG+TGG + chr4_4:55872077-55872096 None:intergenic 30.0%
GCCACAAAATATTGAAATCA+AGG + chr4_4:55872104-55872123 None:intergenic 30.0%
!! GATTTGCTACTACATGATTA+TGG - chr4_4:55872327-55872346 Msa0689050:intron 30.0%
ATTCTTAATAGTGTGAACCA+AGG + chr4_4:55872468-55872487 None:intergenic 30.0%
TGACTAAAATAGACTGTGAA+AGG + chr4_4:55872500-55872519 None:intergenic 30.0%
! TCTTTCTGGTACAACATAAT+TGG + chr4_4:55872602-55872621 None:intergenic 30.0%
ATTTCAGTTAGAACTGTTAC+TGG + chr4_4:55872644-55872663 None:intergenic 30.0%
TTCAAAATGTTGTTGATCCA+AGG - chr4_4:55873092-55873111 Msa0689050:CDS 30.0%
!! GAATTGTTTCTAAATTCACC+AGG + chr4_4:55873121-55873140 None:intergenic 30.0%
ATTTGTCTGAACCATTTCTA+AGG + chr4_4:55873245-55873264 None:intergenic 30.0%
GAAATGGTTCAGACAAATAA+TGG - chr4_4:55873247-55873266 Msa0689050:CDS 30.0%
! TGAATTTGTTTCAGTAGCTA+CGG - chr4_4:55873288-55873307 Msa0689050:CDS 30.0%
TGGTTATCTAGCTAAAATAG+TGG + chr4_4:55873323-55873342 None:intergenic 30.0%
AACTACTACAATATGAGTGA+TGG - chr4_4:55873458-55873477 Msa0689050:intron 30.0%
ATGTGACATAAAGCAGCTAT+AGG + chr4_4:55867698-55867717 None:intergenic 35.0%
GATGCCAAATTCATTGATAC+AGG - chr4_4:55867863-55867882 Msa0689050:three_prime_UTR 35.0%
TTGATACAGGTGTAAGTAAG+AGG - chr4_4:55867876-55867895 Msa0689050:three_prime_UTR 35.0%
!! GTTACTTGTTGTGGAATCAT+TGG + chr4_4:55867908-55867927 None:intergenic 35.0%
TAACAATTTCTCACTCCACT+AGG + chr4_4:55867947-55867966 None:intergenic 35.0%
! ATCAGAGCTACTTTCCATTA+CGG - chr4_4:55868001-55868020 Msa0689050:three_prime_UTR 35.0%
!!! TTCATTTTGGAGCTAATGTC+TGG - chr4_4:55868062-55868081 Msa0689050:three_prime_UTR 35.0%
!!! TCATTTTGGAGCTAATGTCT+GGG - chr4_4:55868063-55868082 Msa0689050:three_prime_UTR 35.0%
CAATCACTGGATAATTCACA+AGG + chr4_4:55868469-55868488 None:intergenic 35.0%
CTTGTGAATTATCCAGTGAT+TGG - chr4_4:55868467-55868486 Msa0689050:intron 35.0%
CGTCTATTTACACTTCAATG+AGG - chr4_4:55868642-55868661 Msa0689050:intron 35.0%
! GTAGGTTGAATTCTCTATCT+TGG + chr4_4:55868839-55868858 None:intergenic 35.0%
!! ATCTCAAAGGCATTTAGGAT+GGG + chr4_4:55868865-55868884 None:intergenic 35.0%
!! AATCTCAAAGGCATTTAGGA+TGG + chr4_4:55868866-55868885 None:intergenic 35.0%
AAACAAACGCATCCTTAAGA+GGG + chr4_4:55868973-55868992 None:intergenic 35.0%
CCCTAAAATGAAAAGCTGTT+AGG + chr4_4:55869192-55869211 None:intergenic 35.0%
CCTATGATGAGAGAGAATTA+GGG + chr4_4:55869342-55869361 None:intergenic 35.0%
TCCTATGATGAGAGAGAATT+AGG + chr4_4:55869343-55869362 None:intergenic 35.0%
AGCCATCTATACTACAGTTT+AGG + chr4_4:55869660-55869679 None:intergenic 35.0%
TATATGGAAATGGAACCAAC+AGG - chr4_4:55869776-55869795 Msa0689050:three_prime_UTR 35.0%
ATATGGAAATGGAACCAACA+GGG - chr4_4:55869777-55869796 Msa0689050:three_prime_UTR 35.0%
!! TTGTCTTCAAGTGGATTGAA+AGG - chr4_4:55869802-55869821 Msa0689050:three_prime_UTR 35.0%
!! TGTCTTCAAGTGGATTGAAA+GGG - chr4_4:55869803-55869822 Msa0689050:three_prime_UTR 35.0%
TACATTTGATTCATCGGCAT+GGG + chr4_4:55870257-55870276 None:intergenic 35.0%
TTACATTTGATTCATCGGCA+TGG + chr4_4:55870258-55870277 None:intergenic 35.0%
TATCTCTCAAGGAGTTCAAT+TGG + chr4_4:55870378-55870397 None:intergenic 35.0%
AACCTGTTTGATATCTCTCA+AGG + chr4_4:55870389-55870408 None:intergenic 35.0%
AAACAGGTTCACTATCATTG+AGG - chr4_4:55870400-55870419 Msa0689050:CDS 35.0%
ATCACTATTAGGGAATTGGT+TGG - chr4_4:55870551-55870570 Msa0689050:intron 35.0%
GATTCTGTCATACAAAGATC+AGG + chr4_4:55870687-55870706 None:intergenic 35.0%
TGACAATTTCTTCATTCTGC+AGG + chr4_4:55870709-55870728 None:intergenic 35.0%
!! GTAATCCTTTTGTTTCCTCT+TGG - chr4_4:55870798-55870817 Msa0689050:intron 35.0%
TTGCATATGCAAAATCCAAG+AGG + chr4_4:55870816-55870835 None:intergenic 35.0%
! CTTGGATTTTGCATATGCAA+TGG - chr4_4:55870816-55870835 Msa0689050:intron 35.0%
TGCATATGCAATGGACAAAA+AGG - chr4_4:55870825-55870844 Msa0689050:intron 35.0%
TCTTTATCACTGTAGCTATG+TGG - chr4_4:55870968-55870987 Msa0689050:intron 35.0%
TAGCTATGTGGTCAAATTCT+AGG - chr4_4:55870980-55870999 Msa0689050:intron 35.0%
! TGGTCAAATTCTAGGAAAGA+GGG - chr4_4:55870988-55871007 Msa0689050:intron 35.0%
ATTATTGGAGAAGGAGGATT+TGG - chr4_4:55871081-55871100 Msa0689050:intron 35.0%
CTTTCAACATCATCAAAGCA+AGG - chr4_4:55871156-55871175 Msa0689050:intron 35.0%
ATCATCAAAGCAAGGTTACA+AGG - chr4_4:55871164-55871183 Msa0689050:intron 35.0%
! TTCAATCTGAGGTTAGTCAT+TGG - chr4_4:55871190-55871209 Msa0689050:intron 35.0%
AGAAATTTGGTCTCTCTCAT+TGG - chr4_4:55871413-55871432 Msa0689050:intron 35.0%
GAAATTTGGTCTCTCTCATT+GGG - chr4_4:55871414-55871433 Msa0689050:intron 35.0%
TCCGTGAACGATGAAAAATA+AGG + chr4_4:55871562-55871581 None:intergenic 35.0%
! TTTTTCATCGTTCACGGAAT+TGG - chr4_4:55871564-55871583 Msa0689050:intron 35.0%
!! ACATGGTAATGTGCTCTTTT+TGG - chr4_4:55871800-55871819 Msa0689050:intron 35.0%
GGATTGGAATATCTGCATAA+TGG - chr4_4:55871876-55871895 Msa0689050:intron 35.0%
AGATGTTGCATTATTTGGGA+AGG + chr4_4:55872697-55872716 None:intergenic 35.0%
TGGGTTATTCCTTTAGTTGA+AGG - chr4_4:55873061-55873080 Msa0689050:CDS 35.0%
GTTATTCCTTTAGTTGAAGG+AGG - chr4_4:55873064-55873083 Msa0689050:CDS 35.0%
ATATCTCCTCCTTCAACTAA+AGG + chr4_4:55873073-55873092 None:intergenic 35.0%
AAACAATTCAGCATGGAAAG+CGG - chr4_4:55873132-55873151 Msa0689050:CDS 35.0%
ACAACAAGGACTAATGTACT+AGG + chr4_4:55873381-55873400 None:intergenic 35.0%
!! AATTGGTGTCCTCACAGTTT+TGG - chr4_4:55867628-55867647 Msa0689050:three_prime_UTR 40.0%
GTGTCAAAACCAAAACTGTG+AGG + chr4_4:55867640-55867659 None:intergenic 40.0%
!!! CACAGTTTTGGTTTTGACAC+AGG - chr4_4:55867640-55867659 Msa0689050:three_prime_UTR 40.0%
! GGATTCATTAGCTTAGACTG+CGG - chr4_4:55867785-55867804 Msa0689050:three_prime_UTR 40.0%
!! CTCAAATGGGTTACTTGTTG+TGG + chr4_4:55867917-55867936 None:intergenic 40.0%
CACAACAAGTAACCCATTTG+AGG - chr4_4:55867915-55867934 Msa0689050:three_prime_UTR 40.0%
ACTAGGAAAGCTCCTCAAAT+GGG + chr4_4:55867930-55867949 None:intergenic 40.0%
ATTGTGGTGAGTGATGCATT+CGG + chr4_4:55868103-55868122 None:intergenic 40.0%
CTCTTCAAGCGATGTGATTT+AGG - chr4_4:55868271-55868290 Msa0689050:intron 40.0%
! AACAGAGAGTACAGGTAAGT+AGG - chr4_4:55868304-55868323 Msa0689050:intron 40.0%
GGTAAGTAGGATACATTGCA+TGG - chr4_4:55868317-55868336 Msa0689050:intron 40.0%
AAAGGGGAACTTGCATTTAC+TGG + chr4_4:55868580-55868599 None:intergenic 40.0%
AATGAGGTTGAGAAACTTCC+TGG - chr4_4:55868658-55868677 Msa0689050:intron 40.0%
! CATTTCCAGGATGAGTTGAA+GGG + chr4_4:55868750-55868769 None:intergenic 40.0%
! TCATTTCCAGGATGAGTTGA+AGG + chr4_4:55868751-55868770 None:intergenic 40.0%
GAAACAAACGCATCCTTAAG+AGG + chr4_4:55868974-55868993 None:intergenic 40.0%
CCCTAATTCTCTCTCATCAT+AGG - chr4_4:55869339-55869358 Msa0689050:intron 40.0%
ACAAACATCAAGAAGGCCTA+TGG - chr4_4:55869577-55869596 Msa0689050:intron 40.0%
CAAACATCAAGAAGGCCTAT+GGG - chr4_4:55869578-55869597 Msa0689050:intron 40.0%
AAACATCAAGAAGGCCTATG+GGG - chr4_4:55869579-55869598 Msa0689050:intron 40.0%
ATATACTTCACTGGACCACA+TGG + chr4_4:55869628-55869647 None:intergenic 40.0%
TGGTCCAGTGAAGTATATGT+GGG - chr4_4:55869630-55869649 Msa0689050:intron 40.0%
GGCCTAAACTGTAGTATAGA+TGG - chr4_4:55869655-55869674 Msa0689050:three_prime_UTR 40.0%
ACTTGAAGACAAATCCCTGT+TGG + chr4_4:55869794-55869813 None:intergenic 40.0%
AACAGGGATTTGTCTTCAAG+TGG - chr4_4:55869793-55869812 Msa0689050:three_prime_UTR 40.0%
TAACATTGTGAGCTTTGCGA+TGG + chr4_4:55869842-55869861 None:intergenic 40.0%
TGCGTCAGAAAATCAGGTAA+GGG + chr4_4:55870207-55870226 None:intergenic 40.0%
TTGCGTCAGAAAATCAGGTA+AGG + chr4_4:55870208-55870227 None:intergenic 40.0%
TGAGGAAGAACAACCTTTCA+GGG - chr4_4:55870346-55870365 Msa0689050:CDS 40.0%
CTCCTTGAGAGATATCAAAC+AGG - chr4_4:55870384-55870403 Msa0689050:CDS 40.0%
! GGAATTGGTTGGTATGAATG+AGG - chr4_4:55870562-55870581 Msa0689050:intron 40.0%
! GTGGTCAAATTCTAGGAAAG+AGG - chr4_4:55870987-55871006 Msa0689050:intron 40.0%
! GTGTTGTTGGAGATTTCCAT+TGG + chr4_4:55871486-55871505 None:intergenic 40.0%
!! CATGCCAAGATAGCTGATTT+TGG - chr4_4:55871963-55871982 Msa0689050:intron 40.0%
TAGGCCAAAATCAGCTATCT+TGG + chr4_4:55871970-55871989 None:intergenic 40.0%
! TTTGGCCTAAGTAGAGCTTT+TGG - chr4_4:55871981-55872000 Msa0689050:intron 40.0%
CGTTACCAAAAGCTCTACTT+AGG + chr4_4:55871989-55872008 None:intergenic 40.0%
AGTTCTCTTAGTGAGTTCCT+TGG - chr4_4:55872448-55872467 Msa0689050:CDS 40.0%
! GTTTGGTGAAATGCATGACA+TGG + chr4_4:55873167-55873186 None:intergenic 40.0%
TTTCACCAAACGCAACAGAA+AGG - chr4_4:55873176-55873195 Msa0689050:CDS 40.0%
! GGAGTGTCTTTCCTTAGAAA+TGG - chr4_4:55873231-55873250 Msa0689050:CDS 40.0%
ACACAGGCTCAAGATCAATC+AGG - chr4_4:55867656-55867675 Msa0689050:three_prime_UTR 45.0%
CACTAGGAAAGCTCCTCAAA+TGG + chr4_4:55867931-55867950 None:intergenic 45.0%
CATTTGAGGAGCTTTCCTAG+TGG - chr4_4:55867929-55867948 Msa0689050:three_prime_UTR 45.0%
TTGTGGTGAGTGATGCATTC+GGG + chr4_4:55868102-55868121 None:intergenic 45.0%
TGCATCACTCACCACAATCA+AGG - chr4_4:55868105-55868124 Msa0689050:three_prime_UTR 45.0%
GTAGACGATCTCCTTGATTG+TGG + chr4_4:55868119-55868138 None:intergenic 45.0%
CCTGTACTCTCTGTTTGTGA+TGG + chr4_4:55868299-55868318 None:intergenic 45.0%
! CCATCACAAACAGAGAGTAC+AGG - chr4_4:55868296-55868315 Msa0689050:intron 45.0%
GCTTAATCGTCTCCAATCAC+TGG + chr4_4:55868482-55868501 None:intergenic 45.0%
ATAGACCCTTCAACTCATCC+TGG - chr4_4:55868742-55868761 Msa0689050:intron 45.0%
AGTCAAACGTGATTCCCAGA+TGG + chr4_4:55868788-55868807 None:intergenic 45.0%
ATCTGGGAATCACGTTTGAC+TGG - chr4_4:55868787-55868806 Msa0689050:intron 45.0%
!! CAAAGGCATTTAGGATGGGT+GGG + chr4_4:55868861-55868880 None:intergenic 45.0%
!! TCAAAGGCATTTAGGATGGG+TGG + chr4_4:55868862-55868881 None:intergenic 45.0%
CAGCTTACCATCATCTTGGT+CGG + chr4_4:55868920-55868939 None:intergenic 45.0%
AATTGGCAAGGAGATCCATG+TGG - chr4_4:55869610-55869629 Msa0689050:intron 45.0%
GTGGTCCAGTGAAGTATATG+TGG - chr4_4:55869629-55869648 Msa0689050:intron 45.0%
CCTTCCCACATATACTTCAC+TGG + chr4_4:55869637-55869656 None:intergenic 45.0%
CCAGTGAAGTATATGTGGGA+AGG - chr4_4:55869634-55869653 Msa0689050:three_prime_UTR 45.0%
AAGTGGGGGAGATAGTTTCT+AGG - chr4_4:55870032-55870051 Msa0689050:CDS 45.0%
AATCAGGTAAGGGACCGTTT+AGG + chr4_4:55870197-55870216 None:intergenic 45.0%
GTGAGGAAGAACAACCTTTC+AGG - chr4_4:55870345-55870364 Msa0689050:CDS 45.0%
GAGGAAGAACAACCTTTCAG+GGG - chr4_4:55870347-55870366 Msa0689050:CDS 45.0%
CAATTGGAACTACCCCTGAA+AGG + chr4_4:55870362-55870381 None:intergenic 45.0%
! ATTGCAGTTGATGCAGCACA+TGG - chr4_4:55871783-55871802 Msa0689050:intron 45.0%
!! GTTTTGGATGGTGCATCTCA+TGG + chr4_4:55872379-55872398 None:intergenic 45.0%
TAGACTGTGAAAGGAGCTTG+TGG + chr4_4:55872491-55872510 None:intergenic 45.0%
CAAGCAATAGTAAGAGCAGC+TGG - chr4_4:55873016-55873035 Msa0689050:CDS 45.0%
CTAAATTCACCAGGCAACCT+TGG + chr4_4:55873112-55873131 None:intergenic 45.0%
GCCAGACATGAGCCAAATAT+TGG - chr4_4:55873198-55873217 Msa0689050:CDS 45.0%
! GCCAATATTTGGCTCATGTC+TGG + chr4_4:55873202-55873221 None:intergenic 45.0%
CCAAATATTGGCCGAACTGA+GGG - chr4_4:55873210-55873229 Msa0689050:CDS 45.0%
GCAGTGTTCATCACAACTGC+TGG + chr4_4:55868550-55868569 None:intergenic 50.0%
CGAGAAACCGACCAAGATGA+TGG - chr4_4:55868910-55868929 Msa0689050:intron 50.0%
! CGACCAAGATGATGGTAAGC+TGG - chr4_4:55868918-55868937 Msa0689050:intron 50.0%
TGATGGTAAGCTGGCCCTTT+AGG - chr4_4:55868927-55868946 Msa0689050:intron 50.0%
!! CCAATTTCTAGCCACCCCAT+AGG + chr4_4:55869596-55869615 None:intergenic 50.0%
CCTATGGGGTGGCTAGAAAT+TGG - chr4_4:55869593-55869612 Msa0689050:intron 50.0%
AAACTATCTCCCCCACTTGC+AGG + chr4_4:55870030-55870049 None:intergenic 50.0%
CGCAGTTGCGTCAGAAAATC+AGG + chr4_4:55870213-55870232 None:intergenic 50.0%
! CATGTGTTGGCAGAGATGTG+AGG - chr4_4:55870328-55870347 Msa0689050:CDS 50.0%
CATATATCCACCCAACCTGC+TGG - chr4_4:55872020-55872039 Msa0689050:intron 50.0%
ACATAACCTAGTGTGCCAGC+AGG + chr4_4:55872038-55872057 None:intergenic 50.0%
GTTGTTGATCCAAGGTTGCC+TGG - chr4_4:55873100-55873119 Msa0689050:CDS 50.0%
TTCAGCATGGAAAGCGGTAG+AGG - chr4_4:55873138-55873157 Msa0689050:CDS 50.0%
! TCTGGCCTTTCTGTTGCGTT+TGG + chr4_4:55873184-55873203 None:intergenic 50.0%
GCCAAATATTGGCCGAACTG+AGG - chr4_4:55873209-55873228 Msa0689050:CDS 50.0%
CCCTCAGTTCGGCCAATATT+TGG + chr4_4:55873213-55873232 None:intergenic 50.0%
GGAAAGACACTCCCTCAGTT+CGG + chr4_4:55873224-55873243 None:intergenic 50.0%
! GGCATTTAGGATGGGTGGGT+AGG + chr4_4:55868857-55868876 None:intergenic 55.0%
GGGCCAGCTTACCATCATCT+TGG + chr4_4:55868924-55868943 None:intergenic 55.0%
CATCAAGAAGGCCTATGGGG+TGG - chr4_4:55869582-55869601 Msa0689050:intron 55.0%
GGGGTGGCTAGAAATTGGCA+AGG - chr4_4:55869598-55869617 Msa0689050:intron 55.0%
! GGGGCATTACACCTGCAAGT+GGG - chr4_4:55870016-55870035 Msa0689050:CDS 55.0%
GGGCATTACACCTGCAAGTG+GGG - chr4_4:55870017-55870036 Msa0689050:CDS 55.0%
GGCATTACACCTGCAAGTGG+GGG - chr4_4:55870018-55870037 Msa0689050:CDS 55.0%
ACCTAGTGTGCCAGCAGGTT+GGG + chr4_4:55872033-55872052 None:intergenic 55.0%
AACCTAGTGTGCCAGCAGGT+TGG + chr4_4:55872034-55872053 None:intergenic 55.0%
CTGGCATGTGGTACTTACGC+AGG + chr4_4:55872065-55872084 None:intergenic 55.0%
! CGGGGCATTACACCTGCAAG+TGG - chr4_4:55870015-55870034 Msa0689050:CDS 60.0%
! TAGTGTGCCAGCAGGTTGGG+TGG + chr4_4:55872030-55872049 None:intergenic 60.0%
ACCCAACCTGCTGGCACACT+AGG - chr4_4:55872029-55872048 Msa0689050:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 55867560 55873585 55867560 ID=Msa0689050;Name=Msa0689050
chr4_4 mRNA 55867560 55873585 55867560 ID=Msa0689050-mRNA-1;Parent=Msa0689050;Name=Msa0689050-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0.72|0.66|1|0.63|0.66|12|1134|576
chr4_4 exon 55867560 55868206 55867560 ID=Msa0689050-mRNA-1:exon:14661;Parent=Msa0689050-mRNA-1
chr4_4 exon 55869079 55869268 55869079 ID=Msa0689050-mRNA-1:exon:14660;Parent=Msa0689050-mRNA-1
chr4_4 exon 55869341 55869400 55869341 ID=Msa0689050-mRNA-1:exon:14659;Parent=Msa0689050-mRNA-1
chr4_4 exon 55869633 55869831 55869633 ID=Msa0689050-mRNA-1:exon:14658;Parent=Msa0689050-mRNA-1
chr4_4 exon 55869880 55870162 55869880 ID=Msa0689050-mRNA-1:exon:14657;Parent=Msa0689050-mRNA-1
chr4_4 exon 55870299 55870474 55870299 ID=Msa0689050-mRNA-1:exon:14656;Parent=Msa0689050-mRNA-1
chr4_4 exon 55870724 55870804 55870724 ID=Msa0689050-mRNA-1:exon:14655;Parent=Msa0689050-mRNA-1
chr4_4 exon 55870898 55870969 55870898 ID=Msa0689050-mRNA-1:exon:14654;Parent=Msa0689050-mRNA-1
chr4_4 exon 55871441 55871579 55871441 ID=Msa0689050-mRNA-1:exon:14653;Parent=Msa0689050-mRNA-1
chr4_4 exon 55872346 55872713 55872346 ID=Msa0689050-mRNA-1:exon:14652;Parent=Msa0689050-mRNA-1
chr4_4 exon 55872828 55873359 55872828 ID=Msa0689050-mRNA-1:exon:14651;Parent=Msa0689050-mRNA-1
chr4_4 exon 55873468 55873585 55873468 ID=Msa0689050-mRNA-1:exon:14650;Parent=Msa0689050-mRNA-1
chr4_4 CDS 55873468 55873585 55873468 ID=Msa0689050-mRNA-1:cds;Parent=Msa0689050-mRNA-1
chr4_4 CDS 55872828 55873359 55872828 ID=Msa0689050-mRNA-1:cds;Parent=Msa0689050-mRNA-1
chr4_4 CDS 55872346 55872713 55872346 ID=Msa0689050-mRNA-1:cds;Parent=Msa0689050-mRNA-1
chr4_4 CDS 55871441 55871579 55871441 ID=Msa0689050-mRNA-1:cds;Parent=Msa0689050-mRNA-1
chr4_4 CDS 55870898 55870969 55870898 ID=Msa0689050-mRNA-1:cds;Parent=Msa0689050-mRNA-1
chr4_4 CDS 55870724 55870804 55870724 ID=Msa0689050-mRNA-1:cds;Parent=Msa0689050-mRNA-1
chr4_4 CDS 55870299 55870474 55870299 ID=Msa0689050-mRNA-1:cds;Parent=Msa0689050-mRNA-1
chr4_4 CDS 55869918 55870162 55869918 ID=Msa0689050-mRNA-1:cds;Parent=Msa0689050-mRNA-1
chr4_4 three_prime_UTR 55869880 55869917 55869880 ID=Msa0689050-mRNA-1:three_prime_utr;Parent=Msa0689050-mRNA-1
chr4_4 three_prime_UTR 55869633 55869831 55869633 ID=Msa0689050-mRNA-1:three_prime_utr;Parent=Msa0689050-mRNA-1
chr4_4 three_prime_UTR 55869341 55869400 55869341 ID=Msa0689050-mRNA-1:three_prime_utr;Parent=Msa0689050-mRNA-1
chr4_4 three_prime_UTR 55869079 55869268 55869079 ID=Msa0689050-mRNA-1:three_prime_utr;Parent=Msa0689050-mRNA-1
chr4_4 three_prime_UTR 55867560 55868206 55867560 ID=Msa0689050-mRNA-1:three_prime_utr;Parent=Msa0689050-mRNA-1
Gene Sequence

>Msa0689050

ATGCTTCCTTGTATTAGCAGCATTTATACAAGAATGATGAGAATGTTACTGCATTTTCTTTCGTTATTAATTGGTGTCCTCACAGTTTTGGTTTTGACACAGGCTCAAGATCAATCAGGATTCATTAGCTTAGACTGCGGTCTATCTGAATATTTGAGCTTTTCTGATATAAGCACAGACATAAATTACATCTCAGATGCCAAATTCATTGATACAGGTGTAAGTAAGAGGATATCGCCAATGATTCCACAACAAGTAACCCATTTGAGGAGCTTTCCTAGTGGAGTGAGAAATTGTTACAGAATAAATGTAACAAGTGATACTAAATATTTAATCAGAGCTACTTTCCATTACGGAAACTATGATAATCTAAATCAACCACCACAATTTGATCTTCATTTTGGAGCTAATGTCTGGGATACAGTGAACTTCCCGAATGCATCACTCACCACAATCAAGGAGATCGTCTACAGACCATCAAAAGATTACATACAACTATGTCTTGTTAATACAGGAAAAGGGACTCCATTCATTTCAGTTATAGAATTGAGGACTTTGACAAATTCTAATTATGTCACGCACTCACCTGATTTAGTATTATCACTCTTCAAGCGATGTGATTTAGGTTCCATCACAAACAGAGAGTACAGGTACAAATATGATGTTTATGATCGCATATGGTCGCCTTGTGAATTATCCAGTGATTGGAGACGATTAAGCACCTCATTTAACAGTTATGATCTATCTCTTGATCTTTTCAGACTACCAGCAGTTGTGATGAACACTGCTGTTACACCAGTAAATGCAAGTTCCCCTTTAAAATTTCATTGGGATGCAGATAATGTAAATGACCAATTTCACGTCTATTTACACTTCAATGAGGTTGAGAAACTTCCTGGAAATGAAATTAGAGCATTAAATTTCACATCAAATACCAGATTTAATGGATTCGTGATACATATAGACCCTTCAACTCATCCTGGAAATGAAACTAGAGTAAATACCATCTGGGAATCACTTGAAACTATCACAAACATCAAGAAGGCCTATGGGGTGGCTAGAAATTGGCAAGGAGATCCATGTGGTCCAGTGAAGTATATGTGGGAAGGCCTAAACTGTAGTATAGATGGCTATAGCATCCCAAGAATCACATCTTTAGATATATCAAACAATAGCCTAAACGGTCCCTTACCTGATTTTCTGACGCAACTGCGATTACTAAAAGTCTTAGATGTGAGGAAGAACAACCTTTCAGGGGTAGTTCCAATTGAACTCCTTGAGAGATATCAAACAGGTTCACTATCATTGAGGGTTGATGATAATCCTGATCTTTGTATGACAGAATCCTGCAGAATGAAGAAATTGTCATTTTTGTTTACAAAGAGGGACAAAGCCCAAAGTGTAAAAAAGAATTTGTTAATACCAATTGCATTACTTGTAATCCTTTTGTTTCCTCTTGGATTTTGCATATGCAATGGACAAAAAGCTATGTGGTCAAATTCTAGGAAAGAGGGTTCAATGAAATCAAAGCATCAAACGTTCAGCTATACTGAAATTCTCAAGATTACTGATAACTTCAATACTATTATTGGAGAAGGAGGATTTGGAAAAGTTTATCTTGGTACTCTTCAAGATCAAACTCAAGTAGCTGTAAAAATTCTTTCAACATCATCAAAGCAAGGTTACAAGGAATTTCAATCTGAGGTTAGTCATTGGATTCAAGTTAATTAG
Protein sequence

>Msa0689050

MLPCISSIYTRMMRMLLHFLSLLIGVLTVLVLTQAQDQSGFISLDCGLSEYLSFSDISTDINYISDAKFIDTGVSKRISPMIPQQVTHLRSFPSGVRNCYRINVTSDTKYLIRATFHYGNYDNLNQPPQFDLHFGANVWDTVNFPNASLTTIKEIVYRPSKDYIQLCLVNTGKGTPFISVIELRTLTNSNYVTHSPDLVLSLFKRCDLGSITNREYRYKYDVYDRIWSPCELSSDWRRLSTSFNSYDLSLDLFRLPAVVMNTAVTPVNASSPLKFHWDADNVNDQFHVYLHFNEVEKLPGNEIRALNFTSNTRFNGFVIHIDPSTHPGNETRVNTIWESLETITNIKKAYGVARNWQGDPCGPVKYMWEGLNCSIDGYSIPRITSLDISNNSLNGPLPDFLTQLRLLKVLDVRKNNLSGVVPIELLERYQTGSLSLRVDDNPDLCMTESCRMKKLSFLFTKRDKAQSVKKNLLIPIALLVILLFPLGFCICNGQKAMWSNSRKEGSMKSKHQTFSYTEILKITDNFNTIIGEGGFGKVYLGTLQDQTQVAVKILSTSSKQGYKEFQSEVSHWIQVN*