AlfalfaGEDB | Msa0689360

M. sativa cultivar zhongmu-4 / Msa0689360

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689360	KEH17998.1	80.240	167	33	0	1	167	1	167	3.18e-96	286

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689360	sp\|Q9SCS4\|LBD28_ARATH	28.696	115	81	1	1	114	3	117	1.72e-13	68.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689360	A0A072TMD2	80.240	167	33	0	1	167	1	167	1.52e-96	286

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TFs/TRs:

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Gene ID	Type	Classification
Msa0689360	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689360	MtrunA17_Chr8g0337271	80.240	167	33	0	1	167	1	167	2.93e-100	286
Msa0689360	MtrunA17_Chr8g0358731	36.283	113	68	1	1	113	1	109	3.50e-21	85.1
Msa0689360	MtrunA17_Chr6g0452691	27.211	147	100	2	10	149	9	155	1.02e-12	62.8
Msa0689360	MtrunA17_Chr5g0439111	27.660	141	96	4	10	148	9	145	3.81e-12	62.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689360	AT3G50510.1	28.696	115	81	1	1	114	3	117	1.75e-14	68.2
Msa0689360	AT3G50510.2	28.696	115	81	1	1	114	3	117	1.75e-14	68.2
Msa0689360	AT2G19820.1	30.108	93	64	1	5	96	7	99	6.79e-13	62.4
Msa0689360	AT3G27650.1	32.184	87	59	0	1	87	30	116	1.99e-11	59.3

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Find 37 sgRNAs with CRISPR-Local

Find 41 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGCATCAGAGAAATACA+AGG	0.593981	4_4:+56413077	None:intergenic
AATGCATCAGAGAAATACAA+GGG	0.687321	4_4:+56413078	None:intergenic
AATTTGAGTGCAAGAAGGCA+TGG	0.581783	4_4:-56413452	None:intergenic
AGCAATTTCAATTTCATCCA+AGG	0.478006	4_4:-56413374	None:intergenic
ATCACGGAACAAGACATGCA+AGG	0.684891	4_4:+56413699	Msa0689360:CDS
ATCCAAGGATGTGCTTATTT+GGG	0.326625	4_4:-56413359	None:intergenic
ATTCCATGTACTTGTGAAAG+AGG	0.523001	4_4:+56413723	Msa0689360:CDS
CATATACTCAAGTTTAAGTC+AGG	0.479889	4_4:-56413475	None:intergenic
CATCCAAGGATGTGCTTATT+TGG	0.063042	4_4:-56413360	None:intergenic
CATGACACTGATTGTGAATT+TGG	0.306396	4_4:+56413139	Msa0689360:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCAATTTCAATTTCATCCA+AGG	-	chr4_4:56413377-56413396	None:intergenic	30.0%
CATATACTCAAGTTTAAGTC+AGG	-	chr4_4:56413478-56413497	None:intergenic	30.0%
CTGACTTAAACTTGAGTATA+TGG	+	chr4_4:56413476-56413495	Msa0689360:CDS	30.0%
ATGTGTTCAGTACTCTATTA+AGG	-	chr4_4:56413666-56413685	None:intergenic	30.0%
GCAACAATTTGTCTTTGATG+TGG	-	chr4_4:56413259-56413278	None:intergenic	35.0%
ATCCAAGGATGTGCTTATTT+GGG	-	chr4_4:56413362-56413381	None:intergenic	35.0%
ATTCCATGTACTTGTGAAAG+AGG	+	chr4_4:56413723-56413742	Msa0689360:CDS	35.0%
CATGCCTTCTTCTCATATGT+CGG	-	chr4_4:56413123-56413142	None:intergenic	40.0%
CATCCAAGGATGTGCTTATT+TGG	-	chr4_4:56413363-56413382	None:intergenic	40.0%
AATTTGAGTGCAAGAAGGCA+TGG	-	chr4_4:56413455-56413474	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	56413079	56413752	56413079	ID=Msa0689360;Name=Msa0689360
chr4_4	mRNA	56413079	56413752	56413079	ID=Msa0689360-mRNA-1;Parent=Msa0689360;Name=Msa0689360-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0\|0\|1\|1\|1\|2\|0\|167
chr4_4	exon	56413079	56413498	56413079	ID=Msa0689360-mRNA-1:exon:14861;Parent=Msa0689360-mRNA-1
chr4_4	exon	56413672	56413752	56413672	ID=Msa0689360-mRNA-1:exon:14862;Parent=Msa0689360-mRNA-1
chr4_4	CDS	56413079	56413498	56413079	ID=Msa0689360-mRNA-1:cds;Parent=Msa0689360-mRNA-1
chr4_4	CDS	56413672	56413752	56413672	ID=Msa0689360-mRNA-1:cds;Parent=Msa0689360-mRNA-1

Gene Sequence

>Msa0689360

ATGCATCAGAGAAATACAAGGGCTATTACATGTCTTTTGTGCCGACATATGAGAAGAAGGCATGACACTGATTGTGAATTTGGTCAATACTTTTCGACCAGTAGGCATGCTGACTTTCAGTGTGTCATTCAAATTTTGGGGTTAAGTCGCCTGATGAGAATTATGCAATTAATAGAACCACATCAAAGACAAATTGTTGCCGATTCGCTTCTCACAGAAGGAGAAGCTTGGCGAAGTAACCCAGATCAGGGTTTTCTTGGACACCAATTGGAGCTGGGTGCCCAAATAAGCACATCCTTGGATGAAATTGAAATTGCTAGAAGACTTTTAGCTTTTTGCATTGATAATGAAAATTCAAACAATGCACCTTCTTCCATGCCTTCTTGCACTCAAATTCCTGACTTAAACTTGAGTATATGGAGTACTGAACACATGGGTGACATGGACATCACGGAACAAGACATGCAAGGTATTCCATGTACTTGTGAAAGAGGAGAATCA

Protein sequence

>Msa0689360

MHQRNTRAITCLLCRHMRRRHDTDCEFGQYFSTSRHADFQCVIQILGLSRLMRIMQLIEPHQRQIVADSLLTEGEAWRSNPDQGFLGHQLELGAQISTSLDEIEIARRLLAFCIDNENSNNAPSSMPSCTQIPDLNLSIWSTEHMGDMDITEQDMQGIPCTCERGES