AlfalfaGEDB | Msa0689640

M. sativa cultivar zhongmu-4 / Msa0689640

KEGG: K13464
GO: GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0090567 GO:0098542 GO:0140110 GO:1900067 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141
PFAM: PF06200.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689640	AES92175.2	75.397	126	27	1	1	122	1	126	1.71e-55	179

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689640	sp\|Q8H395\|TI10B_ORYSJ	37.423	163	65	6	1	130	71	229	2.26e-19	83.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689640	G7JS77	75.397	126	27	1	1	122	1	126	8.17e-56	179

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TFs/TRs:

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Gene ID	Type	Classification
Msa0689640	TF	Tify

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689640	MtrunA17_Chr4g0070271	69.466	131	38	2	1	130	67	196	8.36e-54	167
Msa0689640	MtrunA17_Chr4g0070241	92.188	64	5	0	1	64	1	64	4.94e-37	121
Msa0689640	MtrunA17_Chr2g0301131	37.912	182	53	7	1	130	72	245	1.83e-26	99.4
Msa0689640	MtrunA17_Chr5g0399851	35.659	129	60	3	25	130	11	139	1.12e-18	76.6
Msa0689640	MtrunA17_Chr5g0399881	38.562	153	65	6	7	130	5	157	1.71e-18	76.6
Msa0689640	MtrunA17_Chr5g0399861	35.526	152	70	4	7	130	5	156	1.09e-16	72.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689640	AT1G19180.2	33.974	156	69	3	2	123	17	172	2.09e-16	72.0
Msa0689640	AT1G19180.1	33.974	156	69	3	2	123	83	238	4.92e-16	72.0
Msa0689640	AT1G19180.3	33.974	156	69	3	2	123	83	238	4.92e-16	72.0
Msa0689640	AT1G74950.1	36.923	130	47	4	30	124	112	241	3.02e-14	67.4

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Find 24 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGTATGGAGTGGATTCAGT+AGG	0.584677	4_4:+56810074	None:intergenic
AATGTCAACTGTGCAGTTTC+CGG	0.323565	4_4:+56811223	None:intergenic
AGCTCCTCAACTTTGTCAGC+AGG	0.455494	4_4:+56811163	None:intergenic
AGCTTCACTTCTTCGATTCA+TGG	0.237608	4_4:-56810929	Msa0689640:CDS
CAACCACCTCCTACACTAAC+TGG	0.374106	4_4:-56811085	Msa0689640:intron
CAATTACCAGTTAGTGTAGG+AGG	0.522487	4_4:+56811079	None:intergenic
CACCTAAAACAAGTATGGAG+TGG	0.594681	4_4:+56810064	None:intergenic
CATTTGCAAGCACTCAAACT+CGG	0.560353	4_4:-56811135	Msa0689640:CDS
CTCATATCAGGAATAACTGA+AGG	0.598557	4_4:+56811112	None:intergenic
CTGTGGATTCTTTGTCTCCA+AGG	0.531713	4_4:-56811398	Msa0689640:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAACTCAATGGTTAACAAAC+CGG	-	chr4_4:56810266-56810285	Msa0689640:intron	30.0%
GTTGTCGTAACTTTGTAATT+TGG	-	chr4_4:56811019-56811038	Msa0689640:intron	30.0%
TAACTCAATGGTTAACAAAC+CGG	-	chr4_4:56810266-56810285	Msa0689640:intron	30.0%
GTTGTCGTAACTTTGTAATT+TGG	-	chr4_4:56811019-56811038	Msa0689640:intron	30.0%
CTCATATCAGGAATAACTGA+AGG	+	chr4_4:56810399-56810418	None:intergenic	35.0%
TTCTTCGATTCATGGAGAAA+AGG	-	chr4_4:56810587-56810606	Msa0689640:intron	35.0%
ATAGACAGAGAAATGGAGAA+GGG	+	chr4_4:56810729-56810748	None:intergenic	35.0%
ATCAAGGATAGACAGAGAAA+TGG	+	chr4_4:56810736-56810755	None:intergenic	35.0%
TAGAATTGGATGGAATCAGT+TGG	+	chr4_4:56811151-56811170	None:intergenic	35.0%
ACTGCAAAGTAAGTAACAAG+AGG	+	chr4_4:56811286-56811305	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	56810067	56811463	56810067	ID=Msa0689640;Name=Msa0689640
chr4_4	mRNA	56810067	56811463	56810067	ID=Msa0689640-mRNA-1;Parent=Msa0689640;Name=Msa0689640-mRNA-1;_AED=0.51;_eAED=0.52;_QI=0\|0\|0\|0.75\|1\|1\|4\|0\|131
chr4_4	exon	56811399	56811463	56811399	ID=Msa0689640-mRNA-1:exon:15115;Parent=Msa0689640-mRNA-1
chr4_4	exon	56811086	56811270	56811086	ID=Msa0689640-mRNA-1:exon:15114;Parent=Msa0689640-mRNA-1
chr4_4	exon	56810913	56810973	56810913	ID=Msa0689640-mRNA-1:exon:15113;Parent=Msa0689640-mRNA-1
chr4_4	exon	56810067	56810151	56810067	ID=Msa0689640-mRNA-1:exon:15112;Parent=Msa0689640-mRNA-1
chr4_4	CDS	56811399	56811463	56811399	ID=Msa0689640-mRNA-1:cds;Parent=Msa0689640-mRNA-1
chr4_4	CDS	56811086	56811270	56811086	ID=Msa0689640-mRNA-1:cds;Parent=Msa0689640-mRNA-1
chr4_4	CDS	56810913	56810973	56810913	ID=Msa0689640-mRNA-1:cds;Parent=Msa0689640-mRNA-1
chr4_4	CDS	56810067	56810151	56810067	ID=Msa0689640-mRNA-1:cds;Parent=Msa0689640-mRNA-1

Gene Sequence

>Msa0689640

ATGGACTTATTTCCCACAAACGTGACACCAAAAAACGTTACACCTGTGGATTCTTTGTCTCCAAGAACTAATAACTCAATGGTTAACAAACCGGAAACTGCACAGTTGACATTGTTTTATAATGGAGAAGTTATTGTATTGGATGATTTTCCTGCTGACAAAGTTGAGGAGCTTAAGTCATTTGCAAGCACTCAAACTCGGCCTTCAGTTATTCCTGATATGAGTCTTCAACCACCTCCTACACTAACTGAAGATATGGTAATTGCTAGAAAAGCTTCACTTCTTCGATTCATGGAGAAAAGGAAAGCCAGAGTTTCTGCCAAATCACCATATCAAAGAAGCGATTCCGACTCTGCTCCAAAAAAACCTACTGAATCCACTCCATACTTGTTTTAG

Protein sequence

>Msa0689640

MDLFPTNVTPKNVTPVDSLSPRTNNSMVNKPETAQLTLFYNGEVIVLDDFPADKVEELKSFASTQTRPSVIPDMSLQPPPTLTEDMVIARKASLLRFMEKRKARVSAKSPYQRSDSDSAPKKPTESTPYLF*