Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689640 | AES92175.2 | 75.397 | 126 | 27 | 1 | 1 | 122 | 1 | 126 | 1.71e-55 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689640 | sp|Q8H395|TI10B_ORYSJ | 37.423 | 163 | 65 | 6 | 1 | 130 | 71 | 229 | 2.26e-19 | 83.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689640 | G7JS77 | 75.397 | 126 | 27 | 1 | 1 | 122 | 1 | 126 | 8.17e-56 | 179 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0689640 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689640 | MtrunA17_Chr4g0070271 | 69.466 | 131 | 38 | 2 | 1 | 130 | 67 | 196 | 8.36e-54 | 167 |
| Msa0689640 | MtrunA17_Chr4g0070241 | 92.188 | 64 | 5 | 0 | 1 | 64 | 1 | 64 | 4.94e-37 | 121 |
| Msa0689640 | MtrunA17_Chr2g0301131 | 37.912 | 182 | 53 | 7 | 1 | 130 | 72 | 245 | 1.83e-26 | 99.4 |
| Msa0689640 | MtrunA17_Chr5g0399851 | 35.659 | 129 | 60 | 3 | 25 | 130 | 11 | 139 | 1.12e-18 | 76.6 |
| Msa0689640 | MtrunA17_Chr5g0399881 | 38.562 | 153 | 65 | 6 | 7 | 130 | 5 | 157 | 1.71e-18 | 76.6 |
| Msa0689640 | MtrunA17_Chr5g0399861 | 35.526 | 152 | 70 | 4 | 7 | 130 | 5 | 156 | 1.09e-16 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689640 | AT1G19180.2 | 33.974 | 156 | 69 | 3 | 2 | 123 | 17 | 172 | 2.09e-16 | 72.0 |
| Msa0689640 | AT1G19180.1 | 33.974 | 156 | 69 | 3 | 2 | 123 | 83 | 238 | 4.92e-16 | 72.0 |
| Msa0689640 | AT1G19180.3 | 33.974 | 156 | 69 | 3 | 2 | 123 | 83 | 238 | 4.92e-16 | 72.0 |
| Msa0689640 | AT1G74950.1 | 36.923 | 130 | 47 | 4 | 30 | 124 | 112 | 241 | 3.02e-14 | 67.4 |
Find 24 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTCACTTCTTCGATTCA+TGG | 0.237608 | 4_4:-56810929 | Msa0689640:CDS |
| AATGTCAACTGTGCAGTTTC+CGG | 0.323565 | 4_4:+56811223 | None:intergenic |
| TTTAGCACCTAAAACAAGTA+TGG | 0.324800 | 4_4:+56810059 | None:intergenic |
| TCGGAATCGCTTCTTTGATA+TGG | 0.333476 | 4_4:+56810113 | None:intergenic |
| CAACCACCTCCTACACTAAC+TGG | 0.374106 | 4_4:-56811085 | Msa0689640:intron |
| TTATTTCTTTAAAGAAGATA+TGG | 0.376656 | 4_4:-56810965 | Msa0689640:intron |
| TAATGGAGAAGTTATTGTAT+TGG | 0.400656 | 4_4:-56811194 | Msa0689640:CDS |
| GCTTCTTTGATATGGTGATT+TGG | 0.408539 | 4_4:+56810121 | None:intergenic |
| TAACTCAATGGTTAACAAAC+CGG | 0.425259 | 4_4:-56811242 | Msa0689640:CDS |
| GGTGGTTGAAGACTCATATC+AGG | 0.439597 | 4_4:+56811100 | None:intergenic |
| AGCTCCTCAACTTTGTCAGC+AGG | 0.455494 | 4_4:+56811163 | None:intergenic |
| TTACAGAACTAATAACTCAA+TGG | 0.476118 | 4_4:-56811254 | Msa0689640:intron |
| TTCTTCGATTCATGGAGAAA+AGG | 0.478429 | 4_4:-56810921 | Msa0689640:CDS |
| CAATTACCAGTTAGTGTAGG+AGG | 0.522487 | 4_4:+56811079 | None:intergenic |
| CTGTGGATTCTTTGTCTCCA+AGG | 0.531713 | 4_4:-56811398 | Msa0689640:intron |
| TCATGGAGAAAAGGAAAGCC+AGG | 0.536399 | 4_4:-56810912 | Msa0689640:intron |
| CATTTGCAAGCACTCAAACT+CGG | 0.560353 | 4_4:-56811135 | Msa0689640:CDS |
| AAGTATGGAGTGGATTCAGT+AGG | 0.584677 | 4_4:+56810074 | None:intergenic |
| CACCTAAAACAAGTATGGAG+TGG | 0.594681 | 4_4:+56810064 | None:intergenic |
| CTCATATCAGGAATAACTGA+AGG | 0.598557 | 4_4:+56811112 | None:intergenic |
| GTTTGTGGGAAATAAGTCCA+TGG | 0.603000 | 4_4:+56811443 | None:intergenic |
| TTACCAGTTAGTGTAGGAGG+TGG | 0.608915 | 4_4:+56811082 | None:intergenic |
| GAGCAATTACCAGTTAGTGT+AGG | 0.610011 | 4_4:+56811076 | None:intergenic |
| CTTGGAGACAAAGAATCCAC+AGG | 0.648213 | 4_4:+56811399 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATTTTGAAACAAATAA+AGG | - | chr4_4:56810467-56810486 | Msa0689640:intron | 10.0% |
| !!! | TAATATTTTGAAACAAATAA+AGG | - | chr4_4:56810467-56810486 | Msa0689640:intron | 10.0% |
| !!! | AAGGAAATATTTTTTGTATT+AGG | - | chr4_4:56810486-56810505 | Msa0689640:intron | 15.0% |
| !!! | AGGAAATATTTTTTGTATTA+GGG | - | chr4_4:56810487-56810506 | Msa0689640:intron | 15.0% |
| !! | AAGAAATAAAATTTATGATC+AGG | + | chr4_4:56810532-56810551 | None:intergenic | 15.0% |
| !!! | TTATTTCTTTAAAGAAGATA+TGG | - | chr4_4:56810543-56810562 | Msa0689640:intron | 15.0% |
| !!! | TAAATTCAAGTTTTTATTCA+AGG | - | chr4_4:56810637-56810656 | Msa0689640:intron | 15.0% |
| !!! | TCAATCAACTAATATTTTTT+TGG | - | chr4_4:56810774-56810793 | Msa0689640:intron | 15.0% |
| !!! | CAATCAACTAATATTTTTTT+GGG | - | chr4_4:56810775-56810794 | Msa0689640:intron | 15.0% |
| !!! | ATTATGAATATTTTGATTAC+CGG | + | chr4_4:56810892-56810911 | None:intergenic | 15.0% |
| !!! | AAGGAAATATTTTTTGTATT+AGG | - | chr4_4:56810486-56810505 | Msa0689640:intron | 15.0% |
| !!! | AGGAAATATTTTTTGTATTA+GGG | - | chr4_4:56810487-56810506 | Msa0689640:intron | 15.0% |
| !! | AAGAAATAAAATTTATGATC+AGG | + | chr4_4:56810532-56810551 | None:intergenic | 15.0% |
| !!! | TTATTTCTTTAAAGAAGATA+TGG | - | chr4_4:56810543-56810562 | Msa0689640:intron | 15.0% |
| !!! | TAAATTCAAGTTTTTATTCA+AGG | - | chr4_4:56810637-56810656 | Msa0689640:intron | 15.0% |
| !!! | TCAATCAACTAATATTTTTT+TGG | - | chr4_4:56810774-56810793 | Msa0689640:intron | 15.0% |
| !!! | CAATCAACTAATATTTTTTT+GGG | - | chr4_4:56810775-56810794 | Msa0689640:intron | 15.0% |
| !!! | ATTATGAATATTTTGATTAC+CGG | + | chr4_4:56810892-56810911 | None:intergenic | 15.0% |
| !! | TAACAGTAACACTATATATT+AGG | + | chr4_4:56811337-56811356 | None:intergenic | 20.0% |
| !! | TAACAGTAACACTATATATT+AGG | + | chr4_4:56811337-56811356 | None:intergenic | 20.0% |
| ! | TTACAGAACTAATAACTCAA+TGG | - | chr4_4:56810254-56810273 | Msa0689640:intron | 25.0% |
| !!! | CAGTTGACATTGTTTTATAA+TGG | - | chr4_4:56810297-56810316 | Msa0689640:intron | 25.0% |
| ! | TAATGGAGAAGTTATTGTAT+TGG | - | chr4_4:56810314-56810333 | Msa0689640:intron | 25.0% |
| !!! | TTGAATTTAATTTGTCTGAG+AGG | + | chr4_4:56810626-56810645 | None:intergenic | 25.0% |
| ! | TTGTTTCAACATTTCAATCA+AGG | + | chr4_4:56810752-56810771 | None:intergenic | 25.0% |
| !!! | GTAAAATGTGATTTTTGAGA+TGG | + | chr4_4:56811125-56811144 | None:intergenic | 25.0% |
| ! | GTAACACTATATATTAGGTT+AGG | + | chr4_4:56811332-56811351 | None:intergenic | 25.0% |
| ! | TTACAGAACTAATAACTCAA+TGG | - | chr4_4:56810254-56810273 | Msa0689640:intron | 25.0% |
| !!! | CAGTTGACATTGTTTTATAA+TGG | - | chr4_4:56810297-56810316 | Msa0689640:intron | 25.0% |
| ! | TAATGGAGAAGTTATTGTAT+TGG | - | chr4_4:56810314-56810333 | Msa0689640:intron | 25.0% |
| !!! | TTGAATTTAATTTGTCTGAG+AGG | + | chr4_4:56810626-56810645 | None:intergenic | 25.0% |
| ! | TTGTTTCAACATTTCAATCA+AGG | + | chr4_4:56810752-56810771 | None:intergenic | 25.0% |
| !!! | GTAAAATGTGATTTTTGAGA+TGG | + | chr4_4:56811125-56811144 | None:intergenic | 25.0% |
| ! | GTAACACTATATATTAGGTT+AGG | + | chr4_4:56811332-56811351 | None:intergenic | 25.0% |
| TAACTCAATGGTTAACAAAC+CGG | - | chr4_4:56810266-56810285 | Msa0689640:intron | 30.0% | |
| GTTGTCGTAACTTTGTAATT+TGG | - | chr4_4:56811019-56811038 | Msa0689640:intron | 30.0% | |
| !! | AGTAGTTGATGATATGCATA+AGG | + | chr4_4:56811092-56811111 | None:intergenic | 30.0% |
| !! | TCAATTTCTAGTAACACAAG+TGG | + | chr4_4:56811194-56811213 | None:intergenic | 30.0% |
| TAACTCAATGGTTAACAAAC+CGG | - | chr4_4:56810266-56810285 | Msa0689640:intron | 30.0% | |
| GTTGTCGTAACTTTGTAATT+TGG | - | chr4_4:56811019-56811038 | Msa0689640:intron | 30.0% | |
| !! | AGTAGTTGATGATATGCATA+AGG | + | chr4_4:56811092-56811111 | None:intergenic | 30.0% |
| !! | TCAATTTCTAGTAACACAAG+TGG | + | chr4_4:56811194-56811213 | None:intergenic | 30.0% |
| !!! | TTTTTTGGTGTCACGTTTGT+GGG | + | chr4_4:56810082-56810101 | None:intergenic | 35.0% |
| ! | AGAAGCACAAAAACATACCT+TGG | + | chr4_4:56810130-56810149 | None:intergenic | 35.0% |
| !!! | TTTTTTGCACACAAGCAATG+GGG | + | chr4_4:56810191-56810210 | None:intergenic | 35.0% |
| !!! | CTTTTTTGCACACAAGCAAT+GGG | + | chr4_4:56810192-56810211 | None:intergenic | 35.0% |
| !!! | ACTTTTTTGCACACAAGCAA+TGG | + | chr4_4:56810193-56810212 | None:intergenic | 35.0% |
| CTCATATCAGGAATAACTGA+AGG | + | chr4_4:56810399-56810418 | None:intergenic | 35.0% | |
| TTCTTCGATTCATGGAGAAA+AGG | - | chr4_4:56810587-56810606 | Msa0689640:intron | 35.0% | |
| ATAGACAGAGAAATGGAGAA+GGG | + | chr4_4:56810729-56810748 | None:intergenic | 35.0% | |
| ATCAAGGATAGACAGAGAAA+TGG | + | chr4_4:56810736-56810755 | None:intergenic | 35.0% | |
| !!! | CAACTTTCGTGTTGTTTTCA+CGG | + | chr4_4:56811003-56811022 | None:intergenic | 35.0% |
| TAGAATTGGATGGAATCAGT+TGG | + | chr4_4:56811151-56811170 | None:intergenic | 35.0% | |
| ! | AACTGATTCCATCCAATTCT+AGG | - | chr4_4:56811150-56811169 | Msa0689640:CDS | 35.0% |
| ACTGCAAAGTAAGTAACAAG+AGG | + | chr4_4:56811286-56811305 | None:intergenic | 35.0% | |
| ATTTCCTGAGTGATGTTGTT+TGG | - | chr4_4:56811306-56811325 | Msa0689640:intron | 35.0% | |
| GCTTCTTTGATATGGTGATT+TGG | + | chr4_4:56811390-56811409 | None:intergenic | 35.0% | |
| !!! | GTGGATTCAGTAGGTTTTTT+TGG | + | chr4_4:56811428-56811447 | None:intergenic | 35.0% |
| !!! | TTTTTTGGTGTCACGTTTGT+GGG | + | chr4_4:56810082-56810101 | None:intergenic | 35.0% |
| ! | AGAAGCACAAAAACATACCT+TGG | + | chr4_4:56810130-56810149 | None:intergenic | 35.0% |
| !!! | TTTTTTGCACACAAGCAATG+GGG | + | chr4_4:56810191-56810210 | None:intergenic | 35.0% |
| !!! | CTTTTTTGCACACAAGCAAT+GGG | + | chr4_4:56810192-56810211 | None:intergenic | 35.0% |
| !!! | ACTTTTTTGCACACAAGCAA+TGG | + | chr4_4:56810193-56810212 | None:intergenic | 35.0% |
| CTCATATCAGGAATAACTGA+AGG | + | chr4_4:56810399-56810418 | None:intergenic | 35.0% | |
| TTCTTCGATTCATGGAGAAA+AGG | - | chr4_4:56810587-56810606 | Msa0689640:intron | 35.0% | |
| ATAGACAGAGAAATGGAGAA+GGG | + | chr4_4:56810729-56810748 | None:intergenic | 35.0% | |
| ATCAAGGATAGACAGAGAAA+TGG | + | chr4_4:56810736-56810755 | None:intergenic | 35.0% | |
| !!! | CAACTTTCGTGTTGTTTTCA+CGG | + | chr4_4:56811003-56811022 | None:intergenic | 35.0% |
| TAGAATTGGATGGAATCAGT+TGG | + | chr4_4:56811151-56811170 | None:intergenic | 35.0% | |
| ! | AACTGATTCCATCCAATTCT+AGG | - | chr4_4:56811150-56811169 | Msa0689640:CDS | 35.0% |
| ACTGCAAAGTAAGTAACAAG+AGG | + | chr4_4:56811286-56811305 | None:intergenic | 35.0% | |
| ATTTCCTGAGTGATGTTGTT+TGG | - | chr4_4:56811306-56811325 | Msa0689640:intron | 35.0% | |
| GCTTCTTTGATATGGTGATT+TGG | + | chr4_4:56811390-56811409 | None:intergenic | 35.0% | |
| !!! | GTGGATTCAGTAGGTTTTTT+TGG | + | chr4_4:56811428-56811447 | None:intergenic | 35.0% |
| !!! | GTTTTTTGGTGTCACGTTTG+TGG | + | chr4_4:56810083-56810102 | None:intergenic | 40.0% |
| ACCAAAAAACGTTACACCTG+TGG | - | chr4_4:56810093-56810112 | Msa0689640:CDS | 40.0% | |
| !!! | TCCACAGGTGTAACGTTTTT+TGG | + | chr4_4:56810097-56810116 | None:intergenic | 40.0% |
| GCAATGGGGCAAAACAAAAA+TGG | + | chr4_4:56810177-56810196 | None:intergenic | 40.0% | |
| AATGTCAACTGTGCAGTTTC+CGG | + | chr4_4:56810288-56810307 | None:intergenic | 40.0% | |
| ! | TTTTCCTGCTGACAAAGTTG+AGG | - | chr4_4:56810341-56810360 | Msa0689640:intron | 40.0% |
| CATTTGCAAGCACTCAAACT+CGG | - | chr4_4:56810373-56810392 | Msa0689640:intron | 40.0% | |
| CAATTACCAGTTAGTGTAGG+AGG | + | chr4_4:56810432-56810451 | None:intergenic | 40.0% | |
| GAGCAATTACCAGTTAGTGT+AGG | + | chr4_4:56810435-56810454 | None:intergenic | 40.0% | |
| AGCTTCACTTCTTCGATTCA+TGG | - | chr4_4:56810579-56810598 | Msa0689640:intron | 40.0% | |
| GATAGACAGAGAAATGGAGA+AGG | + | chr4_4:56810730-56810749 | None:intergenic | 40.0% | |
| CAAGCAAAATCAAGGACTTC+CGG | - | chr4_4:56810870-56810889 | Msa0689640:intron | 40.0% | |
| CACTATTTATGTTCCTCTCG+TGG | + | chr4_4:56810938-56810957 | None:intergenic | 40.0% | |
| TTGTGCTCATGCTCTTACAA+GGG | + | chr4_4:56810964-56810983 | None:intergenic | 40.0% | |
| !!! | TTCGTGTTGTTTTCACGGTA+CGG | + | chr4_4:56810998-56811017 | None:intergenic | 40.0% |
| TCTAGTAACACAAGTGGCTT+TGG | + | chr4_4:56811188-56811207 | None:intergenic | 40.0% | |
| CTCTAGTCCATTGTGCAAAT+TGG | - | chr4_4:56811256-56811275 | Msa0689640:intron | 40.0% | |
| AGGCAAACCAATTTGCACAA+TGG | + | chr4_4:56811266-56811285 | None:intergenic | 40.0% | |
| TCGGAATCGCTTCTTTGATA+TGG | + | chr4_4:56811398-56811417 | None:intergenic | 40.0% | |
| !!! | AGGTTTTTTTGGAGCAGAGT+CGG | + | chr4_4:56811417-56811436 | None:intergenic | 40.0% |
| ! | AAGTATGGAGTGGATTCAGT+AGG | + | chr4_4:56811437-56811456 | None:intergenic | 40.0% |
| !!! | GTTTTTTGGTGTCACGTTTG+TGG | + | chr4_4:56810083-56810102 | None:intergenic | 40.0% |
| ACCAAAAAACGTTACACCTG+TGG | - | chr4_4:56810093-56810112 | Msa0689640:CDS | 40.0% | |
| !!! | TCCACAGGTGTAACGTTTTT+TGG | + | chr4_4:56810097-56810116 | None:intergenic | 40.0% |
| GCAATGGGGCAAAACAAAAA+TGG | + | chr4_4:56810177-56810196 | None:intergenic | 40.0% | |
| AATGTCAACTGTGCAGTTTC+CGG | + | chr4_4:56810288-56810307 | None:intergenic | 40.0% | |
| ! | TTTTCCTGCTGACAAAGTTG+AGG | - | chr4_4:56810341-56810360 | Msa0689640:intron | 40.0% |
| CATTTGCAAGCACTCAAACT+CGG | - | chr4_4:56810373-56810392 | Msa0689640:intron | 40.0% | |
| CAATTACCAGTTAGTGTAGG+AGG | + | chr4_4:56810432-56810451 | None:intergenic | 40.0% | |
| GAGCAATTACCAGTTAGTGT+AGG | + | chr4_4:56810435-56810454 | None:intergenic | 40.0% | |
| AGCTTCACTTCTTCGATTCA+TGG | - | chr4_4:56810579-56810598 | Msa0689640:intron | 40.0% | |
| GATAGACAGAGAAATGGAGA+AGG | + | chr4_4:56810730-56810749 | None:intergenic | 40.0% | |
| CAAGCAAAATCAAGGACTTC+CGG | - | chr4_4:56810870-56810889 | Msa0689640:intron | 40.0% | |
| CACTATTTATGTTCCTCTCG+TGG | + | chr4_4:56810938-56810957 | None:intergenic | 40.0% | |
| TTGTGCTCATGCTCTTACAA+GGG | + | chr4_4:56810964-56810983 | None:intergenic | 40.0% | |
| !!! | TTCGTGTTGTTTTCACGGTA+CGG | + | chr4_4:56810998-56811017 | None:intergenic | 40.0% |
| TCTAGTAACACAAGTGGCTT+TGG | + | chr4_4:56811188-56811207 | None:intergenic | 40.0% | |
| CTCTAGTCCATTGTGCAAAT+TGG | - | chr4_4:56811256-56811275 | Msa0689640:intron | 40.0% | |
| AGGCAAACCAATTTGCACAA+TGG | + | chr4_4:56811266-56811285 | None:intergenic | 40.0% | |
| TCGGAATCGCTTCTTTGATA+TGG | + | chr4_4:56811398-56811417 | None:intergenic | 40.0% | |
| !!! | AGGTTTTTTTGGAGCAGAGT+CGG | + | chr4_4:56811417-56811436 | None:intergenic | 40.0% |
| ! | AAGTATGGAGTGGATTCAGT+AGG | + | chr4_4:56811437-56811456 | None:intergenic | 40.0% |
| CTTGGAGACAAAGAATCCAC+AGG | + | chr4_4:56810112-56810131 | None:intergenic | 45.0% | |
| CTGTGGATTCTTTGTCTCCA+AGG | - | chr4_4:56810110-56810129 | Msa0689640:CDS | 45.0% | |
| GGTGGTTGAAGACTCATATC+AGG | + | chr4_4:56810411-56810430 | None:intergenic | 45.0% | |
| TTACCAGTTAGTGTAGGAGG+TGG | + | chr4_4:56810429-56810448 | None:intergenic | 45.0% | |
| TCATGGAGAAAAGGAAAGCC+AGG | - | chr4_4:56810596-56810615 | Msa0689640:intron | 45.0% | |
| ! | ATTTGTCTGAGAGGCATACC+TGG | + | chr4_4:56810617-56810636 | None:intergenic | 45.0% |
| ! | CTTGATTTTGCTTGCGTCGA+AGG | + | chr4_4:56810864-56810883 | None:intergenic | 45.0% |
| CTTCGACGCAAGCAAAATCA+AGG | - | chr4_4:56810862-56810881 | Msa0689640:intron | 45.0% | |
| TCATAGTCAAGAACCACGAG+AGG | - | chr4_4:56810922-56810941 | Msa0689640:CDS | 45.0% | |
| GTTGTGCTCATGCTCTTACA+AGG | + | chr4_4:56810965-56810984 | None:intergenic | 45.0% | |
| TCAGCAAGCCTAGAATTGGA+TGG | + | chr4_4:56811161-56811180 | None:intergenic | 45.0% | |
| CTCTTCAGCAAGCCTAGAAT+TGG | + | chr4_4:56811165-56811184 | None:intergenic | 45.0% | |
| TAGGCCAAACAACATCACTC+AGG | + | chr4_4:56811313-56811332 | None:intergenic | 45.0% | |
| CTTGGAGACAAAGAATCCAC+AGG | + | chr4_4:56810112-56810131 | None:intergenic | 45.0% | |
| CTGTGGATTCTTTGTCTCCA+AGG | - | chr4_4:56810110-56810129 | Msa0689640:CDS | 45.0% | |
| GGTGGTTGAAGACTCATATC+AGG | + | chr4_4:56810411-56810430 | None:intergenic | 45.0% | |
| TTACCAGTTAGTGTAGGAGG+TGG | + | chr4_4:56810429-56810448 | None:intergenic | 45.0% | |
| TCATGGAGAAAAGGAAAGCC+AGG | - | chr4_4:56810596-56810615 | Msa0689640:intron | 45.0% | |
| ! | ATTTGTCTGAGAGGCATACC+TGG | + | chr4_4:56810617-56810636 | None:intergenic | 45.0% |
| ! | CTTGATTTTGCTTGCGTCGA+AGG | + | chr4_4:56810864-56810883 | None:intergenic | 45.0% |
| CTTCGACGCAAGCAAAATCA+AGG | - | chr4_4:56810862-56810881 | Msa0689640:intron | 45.0% | |
| TCATAGTCAAGAACCACGAG+AGG | - | chr4_4:56810922-56810941 | Msa0689640:CDS | 45.0% | |
| GTTGTGCTCATGCTCTTACA+AGG | + | chr4_4:56810965-56810984 | None:intergenic | 45.0% | |
| TCAGCAAGCCTAGAATTGGA+TGG | + | chr4_4:56811161-56811180 | None:intergenic | 45.0% | |
| CTCTTCAGCAAGCCTAGAAT+TGG | + | chr4_4:56811165-56811184 | None:intergenic | 45.0% | |
| TAGGCCAAACAACATCACTC+AGG | + | chr4_4:56811313-56811332 | None:intergenic | 45.0% | |
| AGCTCCTCAACTTTGTCAGC+AGG | + | chr4_4:56810348-56810367 | None:intergenic | 50.0% | |
| CAACCACCTCCTACACTAAC+TGG | - | chr4_4:56810423-56810442 | Msa0689640:intron | 50.0% | |
| AGCTCCTCAACTTTGTCAGC+AGG | + | chr4_4:56810348-56810367 | None:intergenic | 50.0% | |
| CAACCACCTCCTACACTAAC+TGG | - | chr4_4:56810423-56810442 | Msa0689640:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 56810067 | 56811463 | 56810067 | ID=Msa0689640;Name=Msa0689640 |
| chr4_4 | mRNA | 56810067 | 56811463 | 56810067 | ID=Msa0689640-mRNA-1;Parent=Msa0689640;Name=Msa0689640-mRNA-1;_AED=0.51;_eAED=0.52;_QI=0|0|0|0.75|1|1|4|0|131 |
| chr4_4 | exon | 56811399 | 56811463 | 56811399 | ID=Msa0689640-mRNA-1:exon:15115;Parent=Msa0689640-mRNA-1 |
| chr4_4 | exon | 56811086 | 56811270 | 56811086 | ID=Msa0689640-mRNA-1:exon:15114;Parent=Msa0689640-mRNA-1 |
| chr4_4 | exon | 56810913 | 56810973 | 56810913 | ID=Msa0689640-mRNA-1:exon:15113;Parent=Msa0689640-mRNA-1 |
| chr4_4 | exon | 56810067 | 56810151 | 56810067 | ID=Msa0689640-mRNA-1:exon:15112;Parent=Msa0689640-mRNA-1 |
| chr4_4 | CDS | 56811399 | 56811463 | 56811399 | ID=Msa0689640-mRNA-1:cds;Parent=Msa0689640-mRNA-1 |
| chr4_4 | CDS | 56811086 | 56811270 | 56811086 | ID=Msa0689640-mRNA-1:cds;Parent=Msa0689640-mRNA-1 |
| chr4_4 | CDS | 56810913 | 56810973 | 56810913 | ID=Msa0689640-mRNA-1:cds;Parent=Msa0689640-mRNA-1 |
| chr4_4 | CDS | 56810067 | 56810151 | 56810067 | ID=Msa0689640-mRNA-1:cds;Parent=Msa0689640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
