AlfalfaGEDB | Msa0689700

M. sativa cultivar zhongmu-4 / Msa0689700

KEGG: K18490
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689700	AES78040.1	90.164	183	7	1	1	172	1	183	4.89e-114	331

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689700	sp\|O81788\|WOX13_ARATH	54.237	118	39	1	17	119	33	150	7.14e-34	123

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689700	G7KVS3	90.164	183	7	1	1	172	1	183	2.33e-114	331

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TFs/TRs:

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Gene ID	Type	Classification
Msa0689700	TF	HB-WOX

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689700	MtrunA17_Chr7g0222981	90.164	183	7	1	1	172	1	183	4.49e-118	331
Msa0689700	MtrunA17_Chr1g0212511	49.315	219	63	8	1	172	5	222	3.04e-53	170
Msa0689700	MtrunA17_Chr3g0144021	38.220	191	81	5	9	165	7	194	3.75e-32	114

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689700	AT4G35550.1	54.237	118	39	1	17	119	33	150	7.26e-35	123
Msa0689700	AT1G20700.3	43.089	123	52	3	15	119	24	146	3.00e-24	94.4
Msa0689700	AT1G20700.1	43.089	123	52	3	15	119	24	146	3.55e-24	94.4
Msa0689700	AT1G20710.1	39.837	123	56	1	15	119	8	130	7.94e-15	69.3
Msa0689700	AT1G20700.2	50.000	54	27	0	66	119	31	84	9.39e-12	60.1

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Find 30 sgRNAs with CRISPR-Local

Find 51 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAATGTTAATGATGAAC+CGG	0.459463	4_4:+56865053	Msa0689700:CDS
AAGAGTTTCGACTTGTTCAT+CGG	0.503160	4_4:-56864549	None:intergenic
AATTCAAGTCCTCTAAGTAC+TGG	0.519200	4_4:-56865158	None:intergenic
ACCGCTGATTTAACCAAGCA+CGG	0.547494	4_4:+56864962	Msa0689700:CDS
ACCTGTGCAACTGCAAAGTT+TGG	0.336692	4_4:+56864883	Msa0689700:CDS
ATGAACAAGTCGAAACTCTT+CGG	0.463263	4_4:+56864552	Msa0689700:CDS
CAACAAGATCTCACTCTCAC+TGG	0.535564	4_4:+56864641	Msa0689700:CDS
CAATGATAAGAAAACTGAAC+CGG	0.495461	4_4:+56865098	Msa0689700:CDS
CCCGTGCTTGGTTAAATCAG+CGG	0.597671	4_4:-56864963	None:intergenic
CCGCTGATTTAACCAAGCAC+GGG	0.638814	4_4:+56864963	Msa0689700:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTAATCAGAACGCCAATAT+TGG	+	chr4_4:56864503-56864522	Msa0689700:CDS	30.0%
TACTTGCATCATTCCAATAT+TGG	-	chr4_4:56864519-56864538	None:intergenic	30.0%
TCCTAGTAAGGAAAAGATAA+AGG	+	chr4_4:56864934-56864953	Msa0689700:CDS	30.0%
CAATGATAAGAAAACTGAAC+CGG	+	chr4_4:56865098-56865117	Msa0689700:CDS	30.0%
ATGAACAAGTCGAAACTCTT+CGG	+	chr4_4:56864552-56864571	Msa0689700:CDS	35.0%
GAGATCTTGTTGAGAAGATA+AGG	-	chr4_4:56864633-56864652	None:intergenic	35.0%
CTTCAGTTACTCATTCTCAA+CGG	+	chr4_4:56864685-56864704	Msa0689700:intron	35.0%
TAATGAACCGGTCTTTAGTA+CGG	+	chr4_4:56864742-56864761	Msa0689700:intron	35.0%
CTGAAACCAATTATACACAC+TGG	-	chr4_4:56865002-56865021	None:intergenic	35.0%
AATTCAAGTCCTCTAAGTAC+TGG	-	chr4_4:56865161-56865180	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	56864482	56865218	56864482	ID=Msa0689700;Name=Msa0689700
chr4_4	mRNA	56864482	56865218	56864482	ID=Msa0689700-mRNA-1;Parent=Msa0689700;Name=Msa0689700-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0\|0\|1\|0.5\|0.33\|3\|0\|172
chr4_4	exon	56864482	56864662	56864482	ID=Msa0689700-mRNA-1:exon:15074;Parent=Msa0689700-mRNA-1
chr4_4	exon	56864849	56865003	56864849	ID=Msa0689700-mRNA-1:exon:15075;Parent=Msa0689700-mRNA-1
chr4_4	exon	56865036	56865218	56865036	ID=Msa0689700-mRNA-1:exon:15076;Parent=Msa0689700-mRNA-1
chr4_4	CDS	56864482	56864662	56864482	ID=Msa0689700-mRNA-1:cds;Parent=Msa0689700-mRNA-1
chr4_4	CDS	56864849	56865003	56864849	ID=Msa0689700-mRNA-1:cds;Parent=Msa0689700-mRNA-1
chr4_4	CDS	56865036	56865218	56865036	ID=Msa0689700-mRNA-1:cds;Parent=Msa0689700-mRNA-1

Gene Sequence

>Msa0689700

ATGGAGTGGCAGAAGAACGGTTTTAATCAGAACGCCAATATTGGAATGATGCAAGTAAATGTGATGACCGATGAACAAGTCGAAACTCTTCGGAAACAAATCGCAGTTTATTCTGTACTCTCTGAACAACTCATTCAAACGCATAAAACCTTATCTTCTCAACAAGATCTCACTCTCACTGGGTCTACTAGGCTGAGGCAGCGTTGGACACCAACACCTGTGCAACTGCAAAGTTTGGAGCGAATATTTGAAGCTGAGACGGGGACTCCTAGTAAGGAAAAGATAAAGGAGATAACCGCTGATTTAACCAAGCACGGGCCGATTTCAGAGACCAGTGTCAAAGGAAAGCAGCAAAATAATGTTAATGATGAACCGGAAGTAGAGACTGAGGTTGATTCCAATGATAAGAAAACTGAACCGGAGATCGTTGCATCTCAGTCTGCTCAAAATTTGTGCAGCCAGTACTTAGAGGACTTGAATTCCGAATCAGATGACAGTTTACGACGCTCTAGAAACTGA

Protein sequence

>Msa0689700

MEWQKNGFNQNANIGMMQVNVMTDEQVETLRKQIAVYSVLSEQLIQTHKTLSSQQDLTLTGSTRLRQRWTPTPVQLQSLERIFEAETGTPSKEKIKEITADLTKHGPISETSVKGKQQNNVNDEPEVETEVDSNDKKTEPEIVASQSAQNLCSQYLEDLNSESDDSLRRSRN*