Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689900 | XP_039685680.1 | 81.232 | 357 | 51 | 1 | 1 | 341 | 1 | 357 | 0.0 | 610 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689900 | sp|Q9SZL8|FRS5_ARATH | 29.904 | 311 | 201 | 4 | 32 | 342 | 70 | 363 | 2.83e-37 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689900 | D3YBB9 | 73.521 | 355 | 90 | 2 | 1 | 351 | 49 | 403 | 0.0 | 555 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0689900 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689900 | MtrunA17_Chr1g0172971 | 82.051 | 117 | 20 | 1 | 1 | 116 | 1 | 117 | 4.97e-58 | 197 |
| Msa0689900 | MtrunA17_Chr7g0258861 | 34.314 | 306 | 177 | 6 | 36 | 336 | 8 | 294 | 6.03e-54 | 180 |
| Msa0689900 | MtrunA17_Chr2g0324011 | 34.951 | 309 | 178 | 5 | 36 | 341 | 8 | 296 | 1.05e-52 | 184 |
| Msa0689900 | MtrunA17_Chr3g0082121 | 33.223 | 301 | 174 | 6 | 41 | 341 | 49 | 322 | 1.41e-46 | 168 |
| Msa0689900 | MtrunA17_Chr1g0202341 | 32.903 | 310 | 184 | 6 | 34 | 341 | 50 | 337 | 5.45e-45 | 164 |
| Msa0689900 | MtrunA17_Chr1g0164591 | 36.019 | 211 | 126 | 2 | 131 | 341 | 1 | 202 | 5.50e-43 | 152 |
| Msa0689900 | MtrunA17_Chr6g0475591 | 89.041 | 73 | 8 | 0 | 188 | 260 | 1 | 73 | 6.59e-41 | 139 |
| Msa0689900 | MtrunA17_Chr1g0203721 | 28.219 | 365 | 210 | 8 | 1 | 341 | 16 | 352 | 1.33e-40 | 152 |
| Msa0689900 | MtrunA17_Chr8g0363841 | 31.148 | 305 | 185 | 7 | 40 | 341 | 22 | 304 | 7.02e-38 | 144 |
| Msa0689900 | MtrunA17_Chr6g0458391 | 31.894 | 301 | 168 | 6 | 41 | 341 | 231 | 494 | 7.31e-38 | 144 |
| Msa0689900 | MtrunA17_Chr5g0448761 | 29.206 | 315 | 204 | 4 | 32 | 343 | 57 | 355 | 2.61e-37 | 142 |
| Msa0689900 | MtrunA17_Chr2g0296781 | 29.022 | 317 | 197 | 6 | 39 | 353 | 1 | 291 | 1.16e-34 | 135 |
| Msa0689900 | MtrunA17_Chr2g0287651 | 28.479 | 309 | 192 | 8 | 39 | 341 | 79 | 364 | 2.83e-31 | 125 |
| Msa0689900 | MtrunA17_Chr2g0291591 | 27.434 | 339 | 197 | 10 | 16 | 341 | 44 | 346 | 8.03e-30 | 120 |
| Msa0689900 | MtrunA17_Chr5g0441581 | 27.385 | 325 | 202 | 8 | 32 | 353 | 26 | 319 | 1.29e-29 | 120 |
| Msa0689900 | MtrunA17_Chr5g0440451 | 25.460 | 326 | 194 | 7 | 34 | 342 | 42 | 335 | 3.27e-29 | 119 |
| Msa0689900 | MtrunA17_Chr5g0431001 | 28.387 | 310 | 197 | 8 | 40 | 341 | 66 | 358 | 3.36e-29 | 118 |
| Msa0689900 | MtrunA17_Chr1g0198761 | 28.221 | 326 | 205 | 8 | 26 | 341 | 38 | 344 | 9.77e-29 | 117 |
| Msa0689900 | MtrunA17_Chr6g0477261 | 35.185 | 162 | 105 | 0 | 180 | 341 | 7 | 168 | 1.82e-28 | 117 |
| Msa0689900 | MtrunA17_Chr1g0196541 | 26.946 | 334 | 208 | 9 | 39 | 369 | 1 | 301 | 8.26e-28 | 115 |
| Msa0689900 | MtrunA17_Chr1g0203051 | 25.081 | 307 | 207 | 4 | 50 | 354 | 94 | 379 | 1.10e-27 | 114 |
| Msa0689900 | MtrunA17_Chr3g0118611 | 41.322 | 121 | 71 | 0 | 221 | 341 | 111 | 231 | 1.68e-26 | 111 |
| Msa0689900 | MtrunA17_Chr2g0276841 | 26.846 | 298 | 194 | 7 | 49 | 341 | 84 | 362 | 3.79e-26 | 110 |
| Msa0689900 | MtrunA17_Chr2g0290391 | 26.730 | 318 | 197 | 8 | 39 | 341 | 55 | 351 | 3.88e-26 | 110 |
| Msa0689900 | MtrunA17_Chr2g0287061 | 28.990 | 307 | 155 | 10 | 41 | 343 | 189 | 436 | 2.28e-25 | 107 |
| Msa0689900 | MtrunA17_Chr2g0294841 | 28.065 | 310 | 194 | 10 | 41 | 341 | 51 | 340 | 4.74e-25 | 107 |
| Msa0689900 | MtrunA17_Chr1g0207551 | 27.187 | 320 | 193 | 10 | 31 | 341 | 30 | 318 | 1.11e-24 | 105 |
| Msa0689900 | MtrunA17_Chr2g0329031 | 25.538 | 325 | 201 | 8 | 23 | 341 | 2 | 291 | 1.03e-23 | 102 |
| Msa0689900 | MtrunA17_Chr2g0291581 | 24.194 | 310 | 201 | 4 | 38 | 347 | 74 | 349 | 4.96e-22 | 97.8 |
| Msa0689900 | MtrunA17_Chr5g0448511 | 37.008 | 127 | 79 | 1 | 216 | 342 | 1 | 126 | 1.67e-21 | 95.9 |
| Msa0689900 | MtrunA17_Chr3g0080351 | 25.974 | 308 | 198 | 6 | 34 | 341 | 75 | 352 | 1.33e-20 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689900 | AT4G38180.1 | 29.904 | 311 | 201 | 4 | 32 | 342 | 70 | 363 | 2.87e-38 | 146 |
| Msa0689900 | AT3G06250.2 | 27.796 | 313 | 162 | 7 | 34 | 343 | 189 | 440 | 1.09e-29 | 120 |
| Msa0689900 | AT3G06250.1 | 27.796 | 313 | 162 | 7 | 34 | 343 | 189 | 440 | 1.09e-29 | 120 |
| Msa0689900 | AT3G06250.3 | 27.796 | 313 | 162 | 7 | 34 | 343 | 189 | 440 | 1.09e-29 | 120 |
| Msa0689900 | AT5G28530.1 | 26.433 | 314 | 201 | 6 | 40 | 341 | 60 | 355 | 1.06e-28 | 118 |
| Msa0689900 | AT5G28530.3 | 26.433 | 314 | 201 | 6 | 40 | 341 | 60 | 355 | 1.37e-28 | 117 |
| Msa0689900 | AT5G28530.2 | 26.433 | 314 | 201 | 6 | 40 | 341 | 60 | 355 | 1.37e-28 | 117 |
| Msa0689900 | AT5G18960.2 | 25.846 | 325 | 176 | 9 | 24 | 343 | 200 | 464 | 3.82e-25 | 107 |
| Msa0689900 | AT5G18960.1 | 25.846 | 325 | 176 | 9 | 24 | 343 | 200 | 464 | 3.82e-25 | 107 |
| Msa0689900 | AT2G27110.2 | 29.493 | 217 | 136 | 4 | 127 | 341 | 108 | 309 | 5.15e-25 | 107 |
| Msa0689900 | AT2G27110.1 | 29.493 | 217 | 136 | 4 | 127 | 341 | 108 | 309 | 5.15e-25 | 107 |
| Msa0689900 | AT4G15090.1 | 28.620 | 297 | 183 | 8 | 50 | 341 | 66 | 338 | 5.32e-25 | 107 |
| Msa0689900 | AT4G15090.5 | 28.620 | 297 | 183 | 8 | 50 | 341 | 66 | 338 | 5.32e-25 | 107 |
| Msa0689900 | AT4G15090.3 | 28.620 | 297 | 183 | 8 | 50 | 341 | 66 | 338 | 5.32e-25 | 107 |
| Msa0689900 | AT4G15090.2 | 28.620 | 297 | 183 | 8 | 50 | 341 | 66 | 338 | 5.32e-25 | 107 |
| Msa0689900 | AT4G15090.4 | 28.620 | 297 | 183 | 8 | 50 | 341 | 66 | 338 | 5.32e-25 | 107 |
| Msa0689900 | AT1G80010.1 | 27.778 | 306 | 190 | 10 | 41 | 339 | 101 | 382 | 2.23e-24 | 105 |
| Msa0689900 | AT2G27110.3 | 36.434 | 129 | 82 | 0 | 213 | 341 | 36 | 164 | 4.64e-24 | 104 |
| Msa0689900 | AT1G10240.2 | 26.129 | 310 | 199 | 9 | 40 | 341 | 53 | 340 | 6.99e-24 | 103 |
| Msa0689900 | AT1G10240.1 | 26.129 | 310 | 199 | 9 | 40 | 341 | 53 | 340 | 6.99e-24 | 103 |
| Msa0689900 | AT4G38170.1 | 38.525 | 122 | 70 | 2 | 222 | 342 | 11 | 128 | 2.56e-22 | 98.6 |
| Msa0689900 | AT2G32250.5 | 25.656 | 343 | 185 | 9 | 1 | 341 | 8 | 282 | 3.06e-22 | 99.0 |
| Msa0689900 | AT2G32250.2 | 25.656 | 343 | 185 | 9 | 1 | 341 | 8 | 282 | 3.06e-22 | 99.0 |
| Msa0689900 | AT2G32250.4 | 25.656 | 343 | 185 | 9 | 1 | 341 | 8 | 282 | 3.06e-22 | 99.0 |
| Msa0689900 | AT2G32250.6 | 25.656 | 343 | 185 | 9 | 1 | 341 | 8 | 282 | 3.55e-22 | 99.0 |
| Msa0689900 | AT2G32250.1 | 25.656 | 343 | 185 | 9 | 1 | 341 | 8 | 282 | 3.55e-22 | 99.0 |
| Msa0689900 | AT2G32250.3 | 25.656 | 343 | 185 | 9 | 1 | 341 | 8 | 282 | 3.55e-22 | 99.0 |
| Msa0689900 | AT2G32250.8 | 26.531 | 294 | 150 | 7 | 50 | 341 | 12 | 241 | 6.97e-22 | 97.8 |
| Msa0689900 | AT2G32250.7 | 26.531 | 294 | 150 | 7 | 50 | 341 | 12 | 241 | 7.24e-22 | 97.8 |
| Msa0689900 | AT1G76320.3 | 24.150 | 294 | 191 | 6 | 50 | 341 | 12 | 275 | 2.84e-21 | 95.9 |
| Msa0689900 | AT1G76320.1 | 24.150 | 294 | 191 | 6 | 50 | 341 | 12 | 275 | 3.65e-21 | 95.5 |
| Msa0689900 | AT1G76320.4 | 24.150 | 294 | 191 | 6 | 50 | 341 | 12 | 275 | 3.65e-21 | 95.5 |
| Msa0689900 | AT1G76320.2 | 24.150 | 294 | 191 | 6 | 50 | 341 | 12 | 275 | 3.71e-21 | 95.5 |
| Msa0689900 | AT3G22170.2 | 23.734 | 316 | 196 | 7 | 34 | 341 | 69 | 347 | 2.46e-18 | 87.4 |
| Msa0689900 | AT3G22170.1 | 23.734 | 316 | 196 | 7 | 34 | 341 | 69 | 347 | 2.46e-18 | 87.4 |
| Msa0689900 | AT1G52520.1 | 23.779 | 307 | 202 | 7 | 41 | 347 | 91 | 365 | 1.51e-16 | 81.6 |
| Msa0689900 | AT4G19990.5 | 24.919 | 309 | 175 | 9 | 41 | 341 | 27 | 286 | 8.93e-14 | 73.2 |
| Msa0689900 | AT4G19990.3 | 24.919 | 309 | 175 | 9 | 41 | 341 | 27 | 286 | 9.52e-14 | 73.2 |
| Msa0689900 | AT4G19990.4 | 24.919 | 309 | 175 | 9 | 41 | 341 | 27 | 286 | 9.52e-14 | 73.2 |
| Msa0689900 | AT4G19990.7 | 24.919 | 309 | 175 | 9 | 41 | 341 | 41 | 300 | 1.04e-13 | 73.2 |
| Msa0689900 | AT4G19990.6 | 24.919 | 309 | 175 | 9 | 41 | 341 | 27 | 286 | 1.14e-13 | 72.8 |
| Msa0689900 | AT4G19990.2 | 24.919 | 309 | 175 | 9 | 41 | 341 | 27 | 286 | 1.14e-13 | 72.8 |
| Msa0689900 | AT4G19990.1 | 37.963 | 108 | 66 | 1 | 235 | 341 | 122 | 229 | 2.13e-13 | 72.0 |
Find 49 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 4_4:-57214031 | None:intergenic |
| TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 4_4:+57213851 | Msa0689900:intron |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 4_4:+57213329 | Msa0689900:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.271724 | 4_4:-57213978 | None:intergenic |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 4_4:+57213884 | Msa0689900:CDS |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 4_4:-57214025 | None:intergenic |
| TTTGAACTTTGGTGCAGATA+TGG | 0.336981 | 4_4:-57213996 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.339462 | 4_4:-57213379 | None:intergenic |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 4_4:+57213386 | Msa0689900:CDS |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 4_4:-57212849 | None:intergenic |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 4_4:+57214017 | Msa0689900:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 4_4:-57214007 | None:intergenic |
| CCATGATTCTTTATCACTAA+AGG | 0.406174 | 4_4:-57212610 | None:intergenic |
| GCCGAACAAACAATAAATAT+CGG | 0.406788 | 4_4:+57213378 | Msa0689900:CDS |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 4_4:+57212620 | Msa0689900:CDS |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 4_4:+57212691 | Msa0689900:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 4_4:+57213026 | Msa0689900:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 4_4:+57212908 | Msa0689900:CDS |
| TGAATGTCTATAAGATATAT+AGG | 0.445219 | 4_4:+57212940 | Msa0689900:CDS |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 4_4:+57212891 | Msa0689900:CDS |
| CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 4_4:+57212774 | Msa0689900:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 4_4:+57213056 | Msa0689900:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 4_4:+57212545 | Msa0689900:CDS |
| TTTGGTGCAGATATGGTTTG+AGG | 0.466929 | 4_4:-57213989 | None:intergenic |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 4_4:+57212740 | Msa0689900:CDS |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 4_4:-57212885 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 4_4:+57212678 | Msa0689900:CDS |
| TCTAATGACGACTCGTCAAA+AGG | 0.488508 | 4_4:+57213169 | Msa0689900:CDS |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 4_4:+57212734 | Msa0689900:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 4_4:-57213864 | None:intergenic |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 4_4:-57213140 | None:intergenic |
| TGTCTTCTACAGCATCAACT+TGG | 0.523056 | 4_4:-57213274 | None:intergenic |
| TGTCTATAAGATATATAGGT+GGG | 0.523740 | 4_4:+57212944 | Msa0689900:CDS |
| AAATGCTCTGCTTTATGTAA+TGG | 0.525118 | 4_4:-57212984 | None:intergenic |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 4_4:+57212785 | Msa0689900:CDS |
| CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 4_4:+57212610 | Msa0689900:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 4_4:+57212786 | Msa0689900:CDS |
| GAGAACATCTTATGAAGTGA+TGG | 0.551307 | 4_4:+57213088 | Msa0689900:CDS |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 4_4:+57213236 | Msa0689900:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 4_4:+57212569 | Msa0689900:CDS |
| GAAGTGATGGGTGAAGGTGT+TGG | 0.603704 | 4_4:+57213101 | Msa0689900:CDS |
| GACGACTCGTCAAAAGGAGA+TGG | 0.604288 | 4_4:+57213175 | Msa0689900:CDS |
| ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 4_4:+57212534 | Msa0689900:CDS |
| GACTCGTCAAAAGGAGATGG+TGG | 0.615895 | 4_4:+57213178 | Msa0689900:CDS |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 4_4:-57212834 | None:intergenic |
| GTGATGGGTGAAGGTGTTGG+AGG | 0.621481 | 4_4:+57213104 | Msa0689900:CDS |
| AGAACATCTTATGAAGTGAT+GGG | 0.643044 | 4_4:+57213089 | Msa0689900:CDS |
| ATGTCTATAAGATATATAGG+TGG | 0.643489 | 4_4:+57212943 | Msa0689900:CDS |
| TCTTATGAAGTGATGGGTGA+AGG | 0.656961 | 4_4:+57213095 | Msa0689900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATTATGCATATAACAC+TGG | + | chr4_4:57212678-57212697 | Msa0689900:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | + | chr4_4:57212734-57212753 | Msa0689900:CDS | 20.0% |
| !! | TGAATGTCTATAAGATATAT+AGG | + | chr4_4:57212940-57212959 | Msa0689900:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | + | chr4_4:57213533-57213552 | Msa0689900:intron | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+TGG | + | chr4_4:57213561-57213580 | Msa0689900:intron | 20.0% |
| !! | TTTAATTATGCATATAACAC+TGG | + | chr4_4:57212678-57212697 | Msa0689900:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | + | chr4_4:57212734-57212753 | Msa0689900:CDS | 20.0% |
| !! | TGAATGTCTATAAGATATAT+AGG | + | chr4_4:57212940-57212959 | Msa0689900:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | + | chr4_4:57213533-57213552 | Msa0689900:intron | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+TGG | + | chr4_4:57213561-57213580 | Msa0689900:intron | 20.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | + | chr4_4:57212569-57212588 | Msa0689900:CDS | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr4_4:57212730-57212749 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | + | chr4_4:57212740-57212759 | Msa0689900:CDS | 25.0% |
| ! | ATGTCTATAAGATATATAGG+TGG | + | chr4_4:57212943-57212962 | Msa0689900:CDS | 25.0% |
| ! | TGTCTATAAGATATATAGGT+GGG | + | chr4_4:57212944-57212963 | Msa0689900:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr4_4:57213056-57213075 | Msa0689900:CDS | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | + | chr4_4:57213291-57213310 | Msa0689900:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | + | chr4_4:57213292-57213311 | Msa0689900:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | - | chr4_4:57213404-57213423 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | + | chr4_4:57213451-57213470 | Msa0689900:intron | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | + | chr4_4:57213553-57213572 | Msa0689900:intron | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | + | chr4_4:57213822-57213841 | Msa0689900:intron | 25.0% |
| ! | AAAGTGATTATGAAAAAGCT+AGG | + | chr4_4:57214056-57214075 | Msa0689900:CDS | 25.0% |
| ! | AAGTGATTATGAAAAAGCTA+GGG | + | chr4_4:57214057-57214076 | Msa0689900:CDS | 25.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | + | chr4_4:57212569-57212588 | Msa0689900:CDS | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr4_4:57212730-57212749 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | + | chr4_4:57212740-57212759 | Msa0689900:CDS | 25.0% |
| ! | ATGTCTATAAGATATATAGG+TGG | + | chr4_4:57212943-57212962 | Msa0689900:CDS | 25.0% |
| ! | TGTCTATAAGATATATAGGT+GGG | + | chr4_4:57212944-57212963 | Msa0689900:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr4_4:57213056-57213075 | Msa0689900:CDS | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | + | chr4_4:57213291-57213310 | Msa0689900:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | + | chr4_4:57213292-57213311 | Msa0689900:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | - | chr4_4:57213404-57213423 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | + | chr4_4:57213451-57213470 | Msa0689900:intron | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | + | chr4_4:57213553-57213572 | Msa0689900:intron | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | + | chr4_4:57213822-57213841 | Msa0689900:intron | 25.0% |
| ! | AAAGTGATTATGAAAAAGCT+AGG | + | chr4_4:57214056-57214075 | Msa0689900:CDS | 25.0% |
| ! | AAGTGATTATGAAAAAGCTA+GGG | + | chr4_4:57214057-57214076 | Msa0689900:CDS | 25.0% |
| CCATGATTCTTTATCACTAA+AGG | - | chr4_4:57212613-57212632 | None:intergenic | 30.0% | |
| CCTTTAGTGATAAAGAATCA+TGG | + | chr4_4:57212610-57212629 | Msa0689900:CDS | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | + | chr4_4:57212620-57212639 | Msa0689900:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr4_4:57212785-57212804 | Msa0689900:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr4_4:57212786-57212805 | Msa0689900:CDS | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | + | chr4_4:57212875-57212894 | Msa0689900:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | + | chr4_4:57212908-57212927 | Msa0689900:CDS | 30.0% |
| AAATGCTCTGCTTTATGTAA+TGG | - | chr4_4:57212987-57213006 | None:intergenic | 30.0% | |
| AGAACATCTTATGAAGTGAT+GGG | + | chr4_4:57213089-57213108 | Msa0689900:CDS | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | + | chr4_4:57213133-57213152 | Msa0689900:CDS | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | - | chr4_4:57213143-57213162 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | - | chr4_4:57213257-57213276 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | + | chr4_4:57213329-57213348 | Msa0689900:CDS | 30.0% | |
| GCCGAACAAACAATAAATAT+CGG | + | chr4_4:57213378-57213397 | Msa0689900:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr4_4:57213382-57213401 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr4_4:57213386-57213405 | Msa0689900:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr4_4:57213465-57213484 | Msa0689900:intron | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | + | chr4_4:57213490-57213509 | Msa0689900:intron | 30.0% | |
| CACAAATTCTAAGTCAAGAT+AGG | - | chr4_4:57213591-57213610 | None:intergenic | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | - | chr4_4:57213624-57213643 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCTCAA+TGG | + | chr4_4:57213781-57213800 | Msa0689900:intron | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | - | chr4_4:57213867-57213886 | None:intergenic | 30.0% | |
| !!! | AGACATTAGCTACTTTTGAT+TGG | + | chr4_4:57213927-57213946 | Msa0689900:CDS | 30.0% |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr4_4:57213981-57214000 | None:intergenic | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr4_4:57214010-57214029 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | + | chr4_4:57214017-57214036 | Msa0689900:CDS | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | - | chr4_4:57214028-57214047 | None:intergenic | 30.0% | |
| CCATGATTCTTTATCACTAA+AGG | - | chr4_4:57212613-57212632 | None:intergenic | 30.0% | |
| CCTTTAGTGATAAAGAATCA+TGG | + | chr4_4:57212610-57212629 | Msa0689900:CDS | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | + | chr4_4:57212620-57212639 | Msa0689900:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr4_4:57212785-57212804 | Msa0689900:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr4_4:57212786-57212805 | Msa0689900:CDS | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | + | chr4_4:57212875-57212894 | Msa0689900:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | + | chr4_4:57212908-57212927 | Msa0689900:CDS | 30.0% |
| AAATGCTCTGCTTTATGTAA+TGG | - | chr4_4:57212987-57213006 | None:intergenic | 30.0% | |
| AGAACATCTTATGAAGTGAT+GGG | + | chr4_4:57213089-57213108 | Msa0689900:CDS | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | + | chr4_4:57213133-57213152 | Msa0689900:CDS | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | - | chr4_4:57213143-57213162 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | - | chr4_4:57213257-57213276 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | + | chr4_4:57213329-57213348 | Msa0689900:CDS | 30.0% | |
| GCCGAACAAACAATAAATAT+CGG | + | chr4_4:57213378-57213397 | Msa0689900:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr4_4:57213382-57213401 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr4_4:57213386-57213405 | Msa0689900:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr4_4:57213465-57213484 | Msa0689900:intron | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | + | chr4_4:57213490-57213509 | Msa0689900:intron | 30.0% | |
| CACAAATTCTAAGTCAAGAT+AGG | - | chr4_4:57213591-57213610 | None:intergenic | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | - | chr4_4:57213624-57213643 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCTCAA+TGG | + | chr4_4:57213781-57213800 | Msa0689900:intron | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | - | chr4_4:57213867-57213886 | None:intergenic | 30.0% | |
| !!! | AGACATTAGCTACTTTTGAT+TGG | + | chr4_4:57213927-57213946 | Msa0689900:CDS | 30.0% |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr4_4:57213981-57214000 | None:intergenic | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr4_4:57214010-57214029 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | + | chr4_4:57214017-57214036 | Msa0689900:CDS | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | - | chr4_4:57214028-57214047 | None:intergenic | 30.0% | |
| ATATCAACTTCATCTGAGAG+TGG | + | chr4_4:57212534-57212553 | Msa0689900:CDS | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | + | chr4_4:57212691-57212710 | Msa0689900:CDS | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | + | chr4_4:57212774-57212793 | Msa0689900:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | + | chr4_4:57212811-57212830 | Msa0689900:CDS | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | - | chr4_4:57212852-57212871 | None:intergenic | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | + | chr4_4:57212869-57212888 | Msa0689900:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | + | chr4_4:57212874-57212893 | Msa0689900:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr4_4:57213026-57213045 | Msa0689900:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | + | chr4_4:57213088-57213107 | Msa0689900:CDS | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | + | chr4_4:57213884-57213903 | Msa0689900:CDS | 35.0% |
| ! | TTTGAACTTTGGTGCAGATA+TGG | - | chr4_4:57213999-57214018 | None:intergenic | 35.0% |
| ATATCAACTTCATCTGAGAG+TGG | + | chr4_4:57212534-57212553 | Msa0689900:CDS | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | + | chr4_4:57212691-57212710 | Msa0689900:CDS | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | + | chr4_4:57212774-57212793 | Msa0689900:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | + | chr4_4:57212811-57212830 | Msa0689900:CDS | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | - | chr4_4:57212852-57212871 | None:intergenic | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | + | chr4_4:57212869-57212888 | Msa0689900:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | + | chr4_4:57212874-57212893 | Msa0689900:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr4_4:57213026-57213045 | Msa0689900:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | + | chr4_4:57213088-57213107 | Msa0689900:CDS | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | + | chr4_4:57213884-57213903 | Msa0689900:CDS | 35.0% |
| ! | TTTGAACTTTGGTGCAGATA+TGG | - | chr4_4:57213999-57214018 | None:intergenic | 35.0% |
| ATCTGAGAGTGGACAATTGA+CGG | + | chr4_4:57212545-57212564 | Msa0689900:CDS | 40.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | - | chr4_4:57212825-57212844 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTGA+AGG | + | chr4_4:57213095-57213114 | Msa0689900:CDS | 40.0% |
| TCTAATGACGACTCGTCAAA+AGG | + | chr4_4:57213169-57213188 | Msa0689900:CDS | 40.0% | |
| TGTCTTCTACAGCATCAACT+TGG | - | chr4_4:57213277-57213296 | None:intergenic | 40.0% | |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | + | chr4_4:57213299-57213318 | Msa0689900:CDS | 40.0% |
| ! | TGGTTTAGAATTGAAGGCTC+TGG | + | chr4_4:57213471-57213490 | Msa0689900:intron | 40.0% |
| TCCAGCTATGCAAAGATCAT+AGG | + | chr4_4:57213717-57213736 | Msa0689900:intron | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | - | chr4_4:57213721-57213740 | None:intergenic | 40.0% | |
| TACATTTCAGCTGCCTTTCT+TGG | + | chr4_4:57213851-57213870 | Msa0689900:intron | 40.0% | |
| ! | TTTGGTGCAGATATGGTTTG+AGG | - | chr4_4:57213992-57214011 | None:intergenic | 40.0% |
| AGTCGCTTCTTTGACCTAAT+TGG | - | chr4_4:57214034-57214053 | None:intergenic | 40.0% | |
| ATCTGAGAGTGGACAATTGA+CGG | + | chr4_4:57212545-57212564 | Msa0689900:CDS | 40.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | - | chr4_4:57212825-57212844 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTGA+AGG | + | chr4_4:57213095-57213114 | Msa0689900:CDS | 40.0% |
| TCTAATGACGACTCGTCAAA+AGG | + | chr4_4:57213169-57213188 | Msa0689900:CDS | 40.0% | |
| TGTCTTCTACAGCATCAACT+TGG | - | chr4_4:57213277-57213296 | None:intergenic | 40.0% | |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | + | chr4_4:57213299-57213318 | Msa0689900:CDS | 40.0% |
| ! | TGGTTTAGAATTGAAGGCTC+TGG | + | chr4_4:57213471-57213490 | Msa0689900:intron | 40.0% |
| TCCAGCTATGCAAAGATCAT+AGG | + | chr4_4:57213717-57213736 | Msa0689900:intron | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | - | chr4_4:57213721-57213740 | None:intergenic | 40.0% | |
| TACATTTCAGCTGCCTTTCT+TGG | + | chr4_4:57213851-57213870 | Msa0689900:intron | 40.0% | |
| ! | TTTGGTGCAGATATGGTTTG+AGG | - | chr4_4:57213992-57214011 | None:intergenic | 40.0% |
| AGTCGCTTCTTTGACCTAAT+TGG | - | chr4_4:57214034-57214053 | None:intergenic | 40.0% | |
| AGAACTGGACTGTCACATGT+TGG | - | chr4_4:57212837-57212856 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | + | chr4_4:57212879-57212898 | Msa0689900:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | - | chr4_4:57212888-57212907 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr4_4:57212891-57212910 | Msa0689900:CDS | 45.0% |
| AATGAAGCTCTCTCGAAACC+AGG | + | chr4_4:57213236-57213255 | Msa0689900:CDS | 45.0% | |
| ATTTGTGCTCTGTACAGCCA+TGG | + | chr4_4:57213604-57213623 | Msa0689900:intron | 45.0% | |
| AGAACTGGACTGTCACATGT+TGG | - | chr4_4:57212837-57212856 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | + | chr4_4:57212879-57212898 | Msa0689900:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | - | chr4_4:57212888-57212907 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr4_4:57212891-57212910 | Msa0689900:CDS | 45.0% |
| AATGAAGCTCTCTCGAAACC+AGG | + | chr4_4:57213236-57213255 | Msa0689900:CDS | 45.0% | |
| ATTTGTGCTCTGTACAGCCA+TGG | + | chr4_4:57213604-57213623 | Msa0689900:intron | 45.0% | |
| !! | GAAGTGATGGGTGAAGGTGT+TGG | + | chr4_4:57213101-57213120 | Msa0689900:CDS | 50.0% |
| GACGACTCGTCAAAAGGAGA+TGG | + | chr4_4:57213175-57213194 | Msa0689900:CDS | 50.0% | |
| GACTCGTCAAAAGGAGATGG+TGG | + | chr4_4:57213178-57213197 | Msa0689900:CDS | 50.0% | |
| !! | GAAGTGATGGGTGAAGGTGT+TGG | + | chr4_4:57213101-57213120 | Msa0689900:CDS | 50.0% |
| GACGACTCGTCAAAAGGAGA+TGG | + | chr4_4:57213175-57213194 | Msa0689900:CDS | 50.0% | |
| GACTCGTCAAAAGGAGATGG+TGG | + | chr4_4:57213178-57213197 | Msa0689900:CDS | 50.0% | |
| !! | GTGATGGGTGAAGGTGTTGG+AGG | + | chr4_4:57213104-57213123 | Msa0689900:CDS | 55.0% |
| !! | GTGATGGGTGAAGGTGTTGG+AGG | + | chr4_4:57213104-57213123 | Msa0689900:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 57212525 | 57214087 | 57212525 | ID=Msa0689900;Name=Msa0689900 |
| chr4_4 | mRNA | 57212525 | 57214087 | 57212525 | ID=Msa0689900-mRNA-1;Parent=Msa0689900;Name=Msa0689900-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0|1|1|1|2|0|369 |
| chr4_4 | exon | 57212525 | 57213407 | 57212525 | ID=Msa0689900-mRNA-1:exon:15253;Parent=Msa0689900-mRNA-1 |
| chr4_4 | exon | 57213861 | 57214087 | 57213861 | ID=Msa0689900-mRNA-1:exon:15254;Parent=Msa0689900-mRNA-1 |
| chr4_4 | CDS | 57212525 | 57213407 | 57212525 | ID=Msa0689900-mRNA-1:cds;Parent=Msa0689900-mRNA-1 |
| chr4_4 | CDS | 57213861 | 57214087 | 57213861 | ID=Msa0689900-mRNA-1:cds;Parent=Msa0689900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
