AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0690050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0690050 MtrunA17_Chr4g0035891 96.959 296 8 1 1 296 1 295 0.0 596
Msa0690050 MtrunA17_Chr3g0145121 53.292 319 107 8 1 296 1 300 1.42e-97 289
Msa0690050 MtrunA17_Chr8g0372291 39.159 309 138 10 1 281 1 287 9.13e-52 171
Msa0690050 MtrunA17_Chr5g0404981 40.282 355 137 11 1 296 51 389 2.70e-50 171
Msa0690050 MtrunA17_Chr3g0140331 38.406 276 120 9 36 281 67 322 4.47e-45 156
Msa0690050 MtrunA17_Chr8g0340401 38.869 283 113 9 39 281 33 295 2.26e-43 151
Msa0690050 MtrunA17_Chr1g0146231 34.921 315 141 12 15 281 5 303 1.09e-42 149
Msa0690050 MtrunA17_Chr1g0199671 75.714 70 17 0 207 276 237 306 1.33e-34 128
Msa0690050 MtrunA17_Chr6g0461591 81.538 65 12 0 212 276 192 256 2.08e-34 125
Msa0690050 MtrunA17_Chr7g0253101 80.000 65 13 0 212 276 188 252 2.24e-33 123
Msa0690050 MtrunA17_Chr1g0213161 67.532 77 25 0 212 288 152 228 2.84e-33 122
Msa0690050 MtrunA17_Chr1g0169431 76.471 68 16 0 212 279 172 239 8.18e-33 121
Msa0690050 MtrunA17_Chr2g0326771 62.791 86 30 1 191 276 197 280 2.54e-32 121
Msa0690050 MtrunA17_Chr4g0028961 73.134 67 18 0 212 278 232 298 3.70e-32 121
Msa0690050 MtrunA17_Chr5g0395391 68.571 70 22 0 212 281 270 339 1.40e-29 114
Msa0690050 MtrunA17_Chr5g0395391 59.036 83 28 1 199 275 149 231 2.99e-26 105
Msa0690050 MtrunA17_Chr7g0232671 57.143 63 27 0 211 273 186 248 1.72e-20 88.6
Msa0690050 MtrunA17_Chr7g0232701 53.968 63 29 0 211 273 72 134 7.17e-19 81.3
Msa0690050 MtrunA17_Chr7g0232681 31.868 182 107 5 105 273 16 193 4.94e-18 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0690050 AT4G36240.1 47.082 257 90 10 40 282 10 234 1.40e-56 182
Msa0690050 AT5G66320.2 35.838 346 139 10 8 291 5 329 2.41e-51 172
Msa0690050 AT5G66320.1 35.838 346 139 10 8 291 5 329 2.41e-51 172
Msa0690050 AT4G34680.1 41.034 290 114 11 6 283 7 251 2.03e-49 165
Msa0690050 AT4G34680.2 41.034 290 114 11 6 283 7 251 2.03e-49 165
Msa0690050 AT5G25830.1 38.047 297 108 12 40 281 13 288 1.49e-44 154
Msa0690050 AT3G60530.1 47.778 180 73 5 112 283 63 229 2.33e-43 149
Msa0690050 AT4G32890.1 36.331 278 115 11 39 281 16 266 4.85e-43 150
Msa0690050 AT2G45050.1 44.845 194 73 4 112 281 65 248 5.01e-43 148
Msa0690050 AT3G51080.1 69.231 91 22 2 212 296 221 311 2.52e-38 137
Msa0690050 AT3G24050.1 64.706 85 29 1 197 280 178 262 1.05e-33 124
Msa0690050 AT3G54810.1 75.000 68 17 0 212 279 229 296 3.82e-33 124
Msa0690050 AT3G54810.2 75.000 68 17 0 212 279 229 296 3.82e-33 124
Msa0690050 AT1G08010.2 72.464 69 19 0 212 280 220 288 3.59e-32 121
Msa0690050 AT1G08010.1 72.464 69 19 0 212 280 220 288 3.59e-32 121
Msa0690050 AT1G08010.3 72.464 69 19 0 212 280 220 288 3.59e-32 121
Msa0690050 AT1G08000.2 71.014 69 20 0 212 280 218 286 2.77e-30 116
Msa0690050 AT1G08000.1 71.014 69 20 0 212 280 218 286 2.77e-30 116
Msa0690050 AT3G45170.1 60.274 73 29 0 214 286 117 189 9.60e-27 104
Msa0690050 AT2G28340.1 63.077 65 24 0 214 278 193 257 1.64e-24 100

Find 120 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAACTGCACTGAGAAAA+TGG 0.161694 4_4:-57476374 None:intergenic
CTTCTTGTCTTGGTTGTTCT+AGG 0.195513 4_4:-57475805 None:intergenic
AGCCCCACCCGTTTGGGCTT+CGG 0.226880 4_4:-57475893 None:intergenic
GCCCCACCCGTTTGGGCTTC+GGG 0.232140 4_4:-57475892 None:intergenic
GGCCGATGATGTTGCGGATT+TGG 0.241470 4_4:+57475648 Msa0690050:intron
TAAATACCAACTTGAATAAA+TGG 0.261771 4_4:-57476472 None:intergenic
GAACAGCCACCGTAAGGTTT+TGG 0.270098 4_4:+57476089 Msa0690050:CDS
GAGGTGGATGAACCGGTTTC+CGG 0.310815 4_4:+57476129 Msa0690050:CDS
GGTTCGGCCCGGGCCTGAAC+TGG 0.312951 4_4:-57475724 None:intergenic
CGAAACAAGCGTTGAGGTAT+TGG 0.323623 4_4:-57474787 None:intergenic
TGCCGGTGGTTTAGCAGTTC+CGG 0.331211 4_4:+57475366 Msa0690050:CDS
GAAACTGAGCCCCACCCGTT+TGG 0.331959 4_4:-57475900 None:intergenic
TCTTTGCTGAAAAGAGTATA+GGG 0.337151 4_4:-57475855 None:intergenic
CAAGAGAGTTTCCTTTGGTT+TGG 0.341415 4_4:-57474827 None:intergenic
TCTCTTCACAAATTGTTTGT+TGG 0.346081 4_4:-57475087 None:intergenic
AAACTGAGCCCCACCCGTTT+GGG 0.350163 4_4:-57475899 None:intergenic
CTTCTTCTTCTTCCTCCTCC+TGG 0.352825 4_4:-57475228 None:intergenic
GTGAACCAACTGGTCTGAAC+CGG 0.355460 4_4:+57476245 Msa0690050:three_prime_UTR
CTCTCTATTGTATCCAGTTC+AGG 0.364580 4_4:+57475711 Msa0690050:CDS
AACCGGTTTCCGGTCTGAAC+CGG 0.370991 4_4:+57476139 Msa0690050:CDS
GCATTGGTTGGGCCCGGTCT+AGG 0.372639 4_4:-57475751 None:intergenic
ACAGTTGGGCCTTCTTGTCT+TGG 0.379924 4_4:-57475815 None:intergenic
GTTGGGCCCGGTCTAGGTTC+CGG 0.399228 4_4:-57475745 None:intergenic
TAAGGCAGGTAACGGAGATT+AGG 0.403308 4_4:+57476321 Msa0690050:three_prime_UTR
TAGATTAGCTGATTAGATAC+TGG 0.405597 4_4:+57476223 Msa0690050:three_prime_UTR
AGTTCAGGCCCGGGCCGAAC+CGG 0.407384 4_4:+57475726 Msa0690050:CDS
GTCTAGGTTCCGGTTCGGCC+CGG 0.414385 4_4:-57475735 None:intergenic
GGCCGAACCGGAACCTAGAC+CGG 0.414860 4_4:+57475738 Msa0690050:CDS
TTCTTTGCTGAAAAGAGTAT+AGG 0.416988 4_4:-57475856 None:intergenic
AACGCAAACAACGTTGTTGT+CGG 0.417578 4_4:+57475121 Msa0690050:CDS
TTTGGAAATGAGGCGGAGGA+AGG 0.432787 4_4:+57476107 Msa0690050:CDS
TATGTAACGCTTGTGGTGTT+CGG 0.433641 4_4:+57475995 Msa0690050:CDS
AGAAATAGTCAATGATTTAG+TGG 0.433775 4_4:+57476279 Msa0690050:three_prime_UTR
GAATTTCACCGGAAAACGTC+GGG 0.435549 4_4:-57476062 None:intergenic
GAATTTCAACATGGTTCTGT+TGG 0.444517 4_4:+57475187 Msa0690050:CDS
TATTGTATCCAGTTCAGGCC+CGG 0.446736 4_4:+57475716 Msa0690050:CDS
GGAATGGGTGTCTCACTTTG+TGG 0.449579 4_4:+57475669 Msa0690050:CDS
AATGAGGCGGAGGAAGGAGG+TGG 0.451531 4_4:+57476113 Msa0690050:CDS
ATCCGGTTCAGACCGGAAAC+CGG 0.452815 4_4:-57476141 None:intergenic
GAGGAAGGAGGTGGATGAAC+CGG 0.452883 4_4:+57476122 Msa0690050:CDS
TCTAGGTTCCGGTTCGGCCC+GGG 0.468440 4_4:-57475734 None:intergenic
ATAGATTCTGTCCTCAAGCT+TGG 0.468461 4_4:-57475061 None:intergenic
GCCTCATTTCCAAAACCTTA+CGG 0.469337 4_4:-57476098 None:intergenic
TTAGATACTGGTGAACCAAC+TGG 0.470608 4_4:+57476235 Msa0690050:three_prime_UTR
ATTAACTGCACTGAGAAAAT+GGG 0.471694 4_4:-57476373 None:intergenic
AACCGCAAGAGAGTTTCCTT+TGG 0.471900 4_4:-57474832 None:intergenic
TTCTGCGGATTATAGAGAGC+TGG 0.472534 4_4:-57475780 None:intergenic
TCTTCGCCATTTATTCAAGT+TGG 0.475612 4_4:+57476466 Msa0690050:three_prime_UTR
CGGTCTGAACCGGATTCAAA+TGG 0.475660 4_4:+57476149 Msa0690050:CDS
ATGATGTTGCGGATTTGGAA+TGG 0.479723 4_4:+57475653 Msa0690050:CDS
AACTCGTGACCATTTGAATC+CGG 0.481371 4_4:-57476158 None:intergenic
CAGTGGAGAGCTGGTCCGCT+TGG 0.483307 4_4:+57475961 Msa0690050:CDS
GGAGTCAGACTCGCCGTCTC+CGG 0.485968 4_4:-57475338 None:intergenic
TGTGGTGTTCGGTTTAAGTC+CGG 0.492368 4_4:+57476006 Msa0690050:CDS
GGATACAATAGAGAGAGTTC+TGG 0.493646 4_4:-57475703 None:intergenic
GCCCGAAGCCCAAACGGGTG+GGG 0.493923 4_4:+57475891 Msa0690050:CDS
AAAATCCACACGTTACAGTT+GGG 0.498357 4_4:-57475829 None:intergenic
TGATGAAGAGTGACAAAGAG+AGG 0.498438 4_4:-57474856 None:intergenic
TGATGTTGCGGATTTGGAAT+GGG 0.501793 4_4:+57475654 Msa0690050:CDS
GGAAATGAGGCGGAGGAAGG+AGG 0.505698 4_4:+57476110 Msa0690050:CDS
GCCCGGTCTAGGTTCCGGTT+CGG 0.510484 4_4:-57475740 None:intergenic
AGACTCGCCGTCTCCGGCAC+CGG 0.510633 4_4:-57475332 None:intergenic
AGCTGGGAATAAGCATTGGT+TGG 0.510903 4_4:-57475763 None:intergenic
GTGCATGACTCTCTATGAGA+TGG 0.515960 4_4:+57474654 Msa0690050:five_prime_UTR
TTCTCAGGCCGATGATGTTG+CGG 0.519029 4_4:+57475642 Msa0690050:intron
GGTTTGGAAGCACTGAAATG+AGG 0.521338 4_4:-57474811 None:intergenic
AAAAGAAATTGATGTTTACC+AGG 0.530934 4_4:+57475210 Msa0690050:CDS
GCTGGGAATAAGCATTGGTT+GGG 0.531676 4_4:-57475762 None:intergenic
GAAAACGTCGGGCTGCATGC+AGG 0.532133 4_4:-57476051 None:intergenic
AAAACGCCACAGTGGAGAGC+TGG 0.532352 4_4:+57475952 Msa0690050:CDS
AATTGATGTTTACCAGGAGG+AGG 0.533216 4_4:+57475216 Msa0690050:CDS
GTTTGGAAGCACTGAAATGA+GGG 0.537345 4_4:-57474810 None:intergenic
TTCCAAATCCGCAACATCAT+CGG 0.540001 4_4:-57475650 None:intergenic
AGCCCGAAGCCCAAACGGGT+GGG 0.541657 4_4:+57475890 Msa0690050:CDS
GAATAAGCATTGGTTGGGCC+CGG 0.542060 4_4:-57475757 None:intergenic
GTGATAGTGGTAACTTGGTA+AGG 0.542565 4_4:+57476199 Msa0690050:three_prime_UTR
ATTGTATCCAGTTCAGGCCC+GGG 0.543140 4_4:+57475717 Msa0690050:CDS
CTGCATGCAGGTCTATACTC+AGG 0.544535 4_4:-57476039 None:intergenic
AGAACGTGATAGTGGTAACT+TGG 0.546604 4_4:+57476194 Msa0690050:three_prime_UTR
AGAGAGCTGGGAATAAGCAT+TGG 0.549150 4_4:-57475767 None:intergenic
TGAACCAACTGGTCTGAACC+GGG 0.550403 4_4:+57476246 Msa0690050:three_prime_UTR
GCCGAACCGGAACCTAGACC+GGG 0.552879 4_4:+57475739 Msa0690050:CDS
TCTGCGGATTATAGAGAGCT+GGG 0.553907 4_4:-57475779 None:intergenic
ATTTGTTGAGAACGTGATAG+TGG 0.554949 4_4:+57476186 Msa0690050:three_prime_UTR
CATTTGAATCCGGTTCAGAC+CGG 0.555998 4_4:-57476148 None:intergenic
GCTGTTCGAATGAATTTCAC+CGG 0.556294 4_4:-57476073 None:intergenic
AAGCCCGAAGCCCAAACGGG+TGG 0.557944 4_4:+57475889 Msa0690050:CDS
TTTCAGTGCTTCCAAACCAA+AGG 0.559065 4_4:+57474816 Msa0690050:five_prime_UTR
TGCATGACTCTCTATGAGAT+GGG 0.572735 4_4:+57474655 Msa0690050:five_prime_UTR
TCCGGCACCGGAAAATGTTG+TGG 0.574032 4_4:-57475320 None:intergenic
TCATTCGAACAGCCACCGTA+AGG 0.576237 4_4:+57476083 Msa0690050:CDS
AGTGACTAGTCAGCTAAGGC+AGG 0.578356 4_4:+57476307 Msa0690050:three_prime_UTR
AGTGAGTGACTAGTCAGCTA+AGG 0.581255 4_4:+57476303 Msa0690050:three_prime_UTR
ATACTCAGGGAAAAGCCGAC+CGG 0.581357 4_4:-57476025 None:intergenic
CTAGAACAACCAAGACAAGA+AGG 0.581886 4_4:+57475806 Msa0690050:CDS
ACCATGTTGAAATTCACCGT+TGG 0.582797 4_4:-57475179 None:intergenic
CTATACTAGAATATAAGTCT+AGG 0.584044 4_4:+57476419 Msa0690050:three_prime_UTR
CACCGGAACTGCTAAACCAC+CGG 0.593758 4_4:-57475368 None:intergenic
AAAACCCGGTTCAGACCAGT+TGG 0.597362 4_4:-57476250 None:intergenic
TGGTTGTTCTAGGCTTTCTG+CGG 0.603627 4_4:-57475795 None:intergenic
TAGTCAGCTAAGGCAGGTAA+CGG 0.605189 4_4:+57476313 Msa0690050:three_prime_UTR
TGAATTTCACCGGAAAACGT+CGG 0.605768 4_4:-57476063 None:intergenic
AACCAAAGGAAACTCTCTTG+CGG 0.609093 4_4:+57474830 Msa0690050:five_prime_UTR
AATTATTCAACAAAGTTCAG+CGG 0.611078 4_4:+57476530 Msa0690050:three_prime_UTR
AAACATGGAAGTTGTTGTAG+CGG 0.614309 4_4:+57475027 Msa0690050:exon
TGCATGCAGGTCTATACTCA+GGG 0.615040 4_4:-57476038 None:intergenic
TCGTTCATGTTCAGAACCTG+AGG 0.628083 4_4:-57475272 None:intergenic
TTCATGTTCAGAACCTGAGG+TGG 0.629594 4_4:-57475269 None:intergenic
GTGTTCGGTTTAAGTCCGGT+CGG 0.631814 4_4:+57476010 Msa0690050:CDS
AAATTTAGTAGTAGTACTAG+TGG 0.641874 4_4:+57474679 Msa0690050:five_prime_UTR
TCCAACGGTGAATTTCAACA+TGG 0.652718 4_4:+57475178 Msa0690050:CDS
GAAGGCCCAACTGTAACGTG+TGG 0.654146 4_4:+57475824 Msa0690050:CDS
AAAACACTATGTAACGCTTG+TGG 0.656575 4_4:+57475988 Msa0690050:CDS
AGAAATTGATGTTTACCAGG+AGG 0.667546 4_4:+57475213 Msa0690050:CDS
AAGCGTTGAAACCAAGCTTG+AGG 0.681951 4_4:+57475050 Msa0690050:CDS
TCATTTCCAAAACCTTACGG+TGG 0.687073 4_4:-57476095 None:intergenic
AGCGGACCAGCTCTCCACTG+TGG 0.697012 4_4:-57475958 None:intergenic
TGAGGGCGAAACAAGCGTTG+AGG 0.700340 4_4:-57474793 None:intergenic
ATGTTCAGAAAACGCCACAG+TGG 0.715931 4_4:+57475944 Msa0690050:CDS
GTGGGGCTCAGTTTCAACGA+CGG 0.724625 4_4:+57475908 Msa0690050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCACTTTTATTTTATTTATC+AGG + chr4_4:57474876-57474895 Msa0690050:five_prime_UTR 15.0%
!!! TCACTTTTATTTTATTTATC+AGG + chr4_4:57474876-57474895 Msa0690050:five_prime_UTR 15.0%
!!! AATAATAGTTTGAGTTTTGT+AGG + chr4_4:57474996-57475015 Msa0690050:intron 20.0%
!! TAAATACCAACTTGAATAAA+TGG - chr4_4:57476475-57476494 None:intergenic 20.0%
!!! AATAATAGTTTGAGTTTTGT+AGG + chr4_4:57474996-57475015 Msa0690050:intron 20.0%
!! TAAATACCAACTTGAATAAA+TGG - chr4_4:57476475-57476494 None:intergenic 20.0%
! AAATTTAGTAGTAGTACTAG+TGG + chr4_4:57474679-57474698 Msa0690050:five_prime_UTR 25.0%
! TTGTAGGAGAAAAAAAAACA+TGG + chr4_4:57475012-57475031 Msa0690050:intron 25.0%
! AAAAGAAATTGATGTTTACC+AGG + chr4_4:57475210-57475229 Msa0690050:CDS 25.0%
!! ATATAGCTAATAACTCGTTT+TGG + chr4_4:57475610-57475629 Msa0690050:intron 25.0%
!!! TTTTGGTTTTCTTAATTCTC+AGG + chr4_4:57475627-57475646 Msa0690050:intron 25.0%
! AGAAATAGTCAATGATTTAG+TGG + chr4_4:57476279-57476298 Msa0690050:three_prime_UTR 25.0%
! CTATACTAGAATATAAGTCT+AGG + chr4_4:57476419-57476438 Msa0690050:three_prime_UTR 25.0%
!!! ATTTGCTTGCATATTTTGAT+TGG + chr4_4:57476502-57476521 Msa0690050:three_prime_UTR 25.0%
! AATTATTCAACAAAGTTCAG+CGG + chr4_4:57476530-57476549 Msa0690050:three_prime_UTR 25.0%
! AAATTTAGTAGTAGTACTAG+TGG + chr4_4:57474679-57474698 Msa0690050:five_prime_UTR 25.0%
! TTGTAGGAGAAAAAAAAACA+TGG + chr4_4:57475012-57475031 Msa0690050:intron 25.0%
! AAAAGAAATTGATGTTTACC+AGG + chr4_4:57475210-57475229 Msa0690050:CDS 25.0%
!! ATATAGCTAATAACTCGTTT+TGG + chr4_4:57475610-57475629 Msa0690050:intron 25.0%
!!! TTTTGGTTTTCTTAATTCTC+AGG + chr4_4:57475627-57475646 Msa0690050:intron 25.0%
! AGAAATAGTCAATGATTTAG+TGG + chr4_4:57476279-57476298 Msa0690050:three_prime_UTR 25.0%
! CTATACTAGAATATAAGTCT+AGG + chr4_4:57476419-57476438 Msa0690050:three_prime_UTR 25.0%
!!! ATTTGCTTGCATATTTTGAT+TGG + chr4_4:57476502-57476521 Msa0690050:three_prime_UTR 25.0%
! AATTATTCAACAAAGTTCAG+CGG + chr4_4:57476530-57476549 Msa0690050:three_prime_UTR 25.0%
TCTCTTCACAAATTGTTTGT+TGG - chr4_4:57475090-57475109 None:intergenic 30.0%
! TCAAATTCCACAACATTTTC+CGG + chr4_4:57475313-57475332 Msa0690050:CDS 30.0%
AATTCATTACCTTTGTAGCA+TGG + chr4_4:57475442-57475461 Msa0690050:intron 30.0%
! TCTTTGCTGAAAAGAGTATA+GGG - chr4_4:57475858-57475877 None:intergenic 30.0%
! TTCTTTGCTGAAAAGAGTAT+AGG - chr4_4:57475859-57475878 None:intergenic 30.0%
! TAGATTAGCTGATTAGATAC+TGG + chr4_4:57476223-57476242 Msa0690050:three_prime_UTR 30.0%
! CTATTTCTCCAAAAAAAACC+CGG - chr4_4:57476267-57476286 None:intergenic 30.0%
ATTAACTGCACTGAGAAAAT+GGG - chr4_4:57476376-57476395 None:intergenic 30.0%
AATTAACTGCACTGAGAAAA+TGG - chr4_4:57476377-57476396 None:intergenic 30.0%
TCTCTTCACAAATTGTTTGT+TGG - chr4_4:57475090-57475109 None:intergenic 30.0%
! TCAAATTCCACAACATTTTC+CGG + chr4_4:57475313-57475332 Msa0690050:CDS 30.0%
AATTCATTACCTTTGTAGCA+TGG + chr4_4:57475442-57475461 Msa0690050:intron 30.0%
! TCTTTGCTGAAAAGAGTATA+GGG - chr4_4:57475858-57475877 None:intergenic 30.0%
! TTCTTTGCTGAAAAGAGTAT+AGG - chr4_4:57475859-57475878 None:intergenic 30.0%
! TAGATTAGCTGATTAGATAC+TGG + chr4_4:57476223-57476242 Msa0690050:three_prime_UTR 30.0%
! CTATTTCTCCAAAAAAAACC+CGG - chr4_4:57476267-57476286 None:intergenic 30.0%
ATTAACTGCACTGAGAAAAT+GGG - chr4_4:57476376-57476395 None:intergenic 30.0%
AATTAACTGCACTGAGAAAA+TGG - chr4_4:57476377-57476396 None:intergenic 30.0%
AAACATGGAAGTTGTTGTAG+CGG + chr4_4:57475027-57475046 Msa0690050:exon 35.0%
!! GACTTGCTTGATTTTTCCAA+CGG + chr4_4:57475163-57475182 Msa0690050:CDS 35.0%
! GAATTTCAACATGGTTCTGT+TGG + chr4_4:57475187-57475206 Msa0690050:CDS 35.0%
AGAAATTGATGTTTACCAGG+AGG + chr4_4:57475213-57475232 Msa0690050:CDS 35.0%
TTGCATGATTAAAGACTCAC+CGG - chr4_4:57475388-57475407 None:intergenic 35.0%
TATCACTAGTATCATGTGTC+CGG + chr4_4:57475554-57475573 Msa0690050:intron 35.0%
AAAATCCACACGTTACAGTT+GGG - chr4_4:57475832-57475851 None:intergenic 35.0%
AAAAATCCACACGTTACAGT+TGG - chr4_4:57475833-57475852 None:intergenic 35.0%
! CAAGCGTTACATAGTGTTTT+CGG - chr4_4:57475988-57476007 None:intergenic 35.0%
AAAACACTATGTAACGCTTG+TGG + chr4_4:57475988-57476007 Msa0690050:CDS 35.0%
! ATTTGTTGAGAACGTGATAG+TGG + chr4_4:57476186-57476205 Msa0690050:three_prime_UTR 35.0%
TCTTCGCCATTTATTCAAGT+TGG + chr4_4:57476466-57476485 Msa0690050:three_prime_UTR 35.0%
AAACATGGAAGTTGTTGTAG+CGG + chr4_4:57475027-57475046 Msa0690050:exon 35.0%
!! GACTTGCTTGATTTTTCCAA+CGG + chr4_4:57475163-57475182 Msa0690050:CDS 35.0%
! GAATTTCAACATGGTTCTGT+TGG + chr4_4:57475187-57475206 Msa0690050:CDS 35.0%
AGAAATTGATGTTTACCAGG+AGG + chr4_4:57475213-57475232 Msa0690050:CDS 35.0%
TTGCATGATTAAAGACTCAC+CGG - chr4_4:57475388-57475407 None:intergenic 35.0%
TATCACTAGTATCATGTGTC+CGG + chr4_4:57475554-57475573 Msa0690050:intron 35.0%
AAAATCCACACGTTACAGTT+GGG - chr4_4:57475832-57475851 None:intergenic 35.0%
AAAAATCCACACGTTACAGT+TGG - chr4_4:57475833-57475852 None:intergenic 35.0%
! CAAGCGTTACATAGTGTTTT+CGG - chr4_4:57475988-57476007 None:intergenic 35.0%
AAAACACTATGTAACGCTTG+TGG + chr4_4:57475988-57476007 Msa0690050:CDS 35.0%
! ATTTGTTGAGAACGTGATAG+TGG + chr4_4:57476186-57476205 Msa0690050:three_prime_UTR 35.0%
TCTTCGCCATTTATTCAAGT+TGG + chr4_4:57476466-57476485 Msa0690050:three_prime_UTR 35.0%
TGCATGACTCTCTATGAGAT+GGG + chr4_4:57474655-57474674 Msa0690050:five_prime_UTR 40.0%
!! GTTTGGAAGCACTGAAATGA+GGG - chr4_4:57474813-57474832 None:intergenic 40.0%
TTTCAGTGCTTCCAAACCAA+AGG + chr4_4:57474816-57474835 Msa0690050:five_prime_UTR 40.0%
CAAGAGAGTTTCCTTTGGTT+TGG - chr4_4:57474830-57474849 None:intergenic 40.0%
AACCAAAGGAAACTCTCTTG+CGG + chr4_4:57474830-57474849 Msa0690050:five_prime_UTR 40.0%
TGATGAAGAGTGACAAAGAG+AGG - chr4_4:57474859-57474878 None:intergenic 40.0%
ATAGATTCTGTCCTCAAGCT+TGG - chr4_4:57475064-57475083 None:intergenic 40.0%
AACGCAAACAACGTTGTTGT+CGG + chr4_4:57475121-57475140 Msa0690050:CDS 40.0%
TCCAACGGTGAATTTCAACA+TGG + chr4_4:57475178-57475197 Msa0690050:CDS 40.0%
ACCATGTTGAAATTCACCGT+TGG - chr4_4:57475182-57475201 None:intergenic 40.0%
AATTGATGTTTACCAGGAGG+AGG + chr4_4:57475216-57475235 Msa0690050:CDS 40.0%
CAGAAATGTCCATGCTACAA+AGG - chr4_4:57475454-57475473 None:intergenic 40.0%
TTCCAAATCCGCAACATCAT+CGG - chr4_4:57475653-57475672 None:intergenic 40.0%
ATGATGTTGCGGATTTGGAA+TGG + chr4_4:57475653-57475672 Msa0690050:CDS 40.0%
! TGATGTTGCGGATTTGGAAT+GGG + chr4_4:57475654-57475673 Msa0690050:CDS 40.0%
GGATACAATAGAGAGAGTTC+TGG - chr4_4:57475706-57475725 None:intergenic 40.0%
CTCTCTATTGTATCCAGTTC+AGG + chr4_4:57475711-57475730 Msa0690050:CDS 40.0%
CTTCTTGTCTTGGTTGTTCT+AGG - chr4_4:57475808-57475827 None:intergenic 40.0%
CTAGAACAACCAAGACAAGA+AGG + chr4_4:57475806-57475825 Msa0690050:CDS 40.0%
! TCTTTTCAGCAAAGAAGCAG+AGG + chr4_4:57475863-57475882 Msa0690050:CDS 40.0%
TATGTAACGCTTGTGGTGTT+CGG + chr4_4:57475995-57476014 Msa0690050:CDS 40.0%
TGAATTTCACCGGAAAACGT+CGG - chr4_4:57476066-57476085 None:intergenic 40.0%
GCTGTTCGAATGAATTTCAC+CGG - chr4_4:57476076-57476095 None:intergenic 40.0%
TCATTTCCAAAACCTTACGG+TGG - chr4_4:57476098-57476117 None:intergenic 40.0%
!!! ACCGTAAGGTTTTGGAAATG+AGG + chr4_4:57476097-57476116 Msa0690050:CDS 40.0%
GCCTCATTTCCAAAACCTTA+CGG - chr4_4:57476101-57476120 None:intergenic 40.0%
!!! GTAAGGTTTTGGAAATGAGG+CGG + chr4_4:57476100-57476119 Msa0690050:CDS 40.0%
AACTCGTGACCATTTGAATC+CGG - chr4_4:57476161-57476180 None:intergenic 40.0%
!! AGAACGTGATAGTGGTAACT+TGG + chr4_4:57476194-57476213 Msa0690050:three_prime_UTR 40.0%
!! GTGATAGTGGTAACTTGGTA+AGG + chr4_4:57476199-57476218 Msa0690050:three_prime_UTR 40.0%
TTAGATACTGGTGAACCAAC+TGG + chr4_4:57476235-57476254 Msa0690050:three_prime_UTR 40.0%
TGCATGACTCTCTATGAGAT+GGG + chr4_4:57474655-57474674 Msa0690050:five_prime_UTR 40.0%
!! GTTTGGAAGCACTGAAATGA+GGG - chr4_4:57474813-57474832 None:intergenic 40.0%
TTTCAGTGCTTCCAAACCAA+AGG + chr4_4:57474816-57474835 Msa0690050:five_prime_UTR 40.0%
CAAGAGAGTTTCCTTTGGTT+TGG - chr4_4:57474830-57474849 None:intergenic 40.0%
AACCAAAGGAAACTCTCTTG+CGG + chr4_4:57474830-57474849 Msa0690050:five_prime_UTR 40.0%
TGATGAAGAGTGACAAAGAG+AGG - chr4_4:57474859-57474878 None:intergenic 40.0%
ATAGATTCTGTCCTCAAGCT+TGG - chr4_4:57475064-57475083 None:intergenic 40.0%
AACGCAAACAACGTTGTTGT+CGG + chr4_4:57475121-57475140 Msa0690050:CDS 40.0%
TCCAACGGTGAATTTCAACA+TGG + chr4_4:57475178-57475197 Msa0690050:CDS 40.0%
ACCATGTTGAAATTCACCGT+TGG - chr4_4:57475182-57475201 None:intergenic 40.0%
AATTGATGTTTACCAGGAGG+AGG + chr4_4:57475216-57475235 Msa0690050:CDS 40.0%
CAGAAATGTCCATGCTACAA+AGG - chr4_4:57475454-57475473 None:intergenic 40.0%
TTCCAAATCCGCAACATCAT+CGG - chr4_4:57475653-57475672 None:intergenic 40.0%
ATGATGTTGCGGATTTGGAA+TGG + chr4_4:57475653-57475672 Msa0690050:CDS 40.0%
! TGATGTTGCGGATTTGGAAT+GGG + chr4_4:57475654-57475673 Msa0690050:CDS 40.0%
GGATACAATAGAGAGAGTTC+TGG - chr4_4:57475706-57475725 None:intergenic 40.0%
CTCTCTATTGTATCCAGTTC+AGG + chr4_4:57475711-57475730 Msa0690050:CDS 40.0%
CTTCTTGTCTTGGTTGTTCT+AGG - chr4_4:57475808-57475827 None:intergenic 40.0%
CTAGAACAACCAAGACAAGA+AGG + chr4_4:57475806-57475825 Msa0690050:CDS 40.0%
! TCTTTTCAGCAAAGAAGCAG+AGG + chr4_4:57475863-57475882 Msa0690050:CDS 40.0%
TATGTAACGCTTGTGGTGTT+CGG + chr4_4:57475995-57476014 Msa0690050:CDS 40.0%
TGAATTTCACCGGAAAACGT+CGG - chr4_4:57476066-57476085 None:intergenic 40.0%
GCTGTTCGAATGAATTTCAC+CGG - chr4_4:57476076-57476095 None:intergenic 40.0%
TCATTTCCAAAACCTTACGG+TGG - chr4_4:57476098-57476117 None:intergenic 40.0%
!!! ACCGTAAGGTTTTGGAAATG+AGG + chr4_4:57476097-57476116 Msa0690050:CDS 40.0%
GCCTCATTTCCAAAACCTTA+CGG - chr4_4:57476101-57476120 None:intergenic 40.0%
!!! GTAAGGTTTTGGAAATGAGG+CGG + chr4_4:57476100-57476119 Msa0690050:CDS 40.0%
AACTCGTGACCATTTGAATC+CGG - chr4_4:57476161-57476180 None:intergenic 40.0%
!! AGAACGTGATAGTGGTAACT+TGG + chr4_4:57476194-57476213 Msa0690050:three_prime_UTR 40.0%
!! GTGATAGTGGTAACTTGGTA+AGG + chr4_4:57476199-57476218 Msa0690050:three_prime_UTR 40.0%
TTAGATACTGGTGAACCAAC+TGG + chr4_4:57476235-57476254 Msa0690050:three_prime_UTR 40.0%
GTGCATGACTCTCTATGAGA+TGG + chr4_4:57474654-57474673 Msa0690050:five_prime_UTR 45.0%
!! CGAAACAAGCGTTGAGGTAT+TGG - chr4_4:57474790-57474809 None:intergenic 45.0%
!! GGTTTGGAAGCACTGAAATG+AGG - chr4_4:57474814-57474833 None:intergenic 45.0%
AACCGCAAGAGAGTTTCCTT+TGG - chr4_4:57474835-57474854 None:intergenic 45.0%
!! AAGCGTTGAAACCAAGCTTG+AGG + chr4_4:57475050-57475069 Msa0690050:CDS 45.0%
GAAAAAAACAGCACCACCTC+AGG + chr4_4:57475256-57475275 Msa0690050:CDS 45.0%
TTCATGTTCAGAACCTGAGG+TGG - chr4_4:57475272-57475291 None:intergenic 45.0%
TCGTTCATGTTCAGAACCTG+AGG - chr4_4:57475275-57475294 None:intergenic 45.0%
!! GAGTCTGACTCCATTTTTGC+CGG + chr4_4:57475349-57475368 Msa0690050:CDS 45.0%
TGCTAAACCACCGGCAAAAA+TGG - chr4_4:57475362-57475381 None:intergenic 45.0%
GTCGTGTTAGTGACATGTGT+GGG - chr4_4:57475496-57475515 None:intergenic 45.0%
TGTCGTGTTAGTGACATGTG+TGG - chr4_4:57475497-57475516 None:intergenic 45.0%
ACTAGTATCATGTGTCCGGT+CGG + chr4_4:57475558-57475577 Msa0690050:intron 45.0%
TATTGTATCCAGTTCAGGCC+CGG + chr4_4:57475716-57475735 Msa0690050:CDS 45.0%
!! GCTGGGAATAAGCATTGGTT+GGG - chr4_4:57475765-57475784 None:intergenic 45.0%
!! AGCTGGGAATAAGCATTGGT+TGG - chr4_4:57475766-57475785 None:intergenic 45.0%
AGAGAGCTGGGAATAAGCAT+TGG - chr4_4:57475770-57475789 None:intergenic 45.0%
! TCTGCGGATTATAGAGAGCT+GGG - chr4_4:57475782-57475801 None:intergenic 45.0%
! TTCTGCGGATTATAGAGAGC+TGG - chr4_4:57475783-57475802 None:intergenic 45.0%
! TGGTTGTTCTAGGCTTTCTG+CGG - chr4_4:57475798-57475817 None:intergenic 45.0%
! ACTGTGGCGTTTTCTGAACA+TGG - chr4_4:57475945-57475964 None:intergenic 45.0%
ATGTTCAGAAAACGCCACAG+TGG + chr4_4:57475944-57475963 Msa0690050:CDS 45.0%
! CATAGTGTTTTCGGTCCAAG+CGG - chr4_4:57475979-57475998 None:intergenic 45.0%
TGTGGTGTTCGGTTTAAGTC+CGG + chr4_4:57476006-57476025 Msa0690050:CDS 45.0%
TGCATGCAGGTCTATACTCA+GGG - chr4_4:57476041-57476060 None:intergenic 45.0%
GAATTTCACCGGAAAACGTC+GGG - chr4_4:57476065-57476084 None:intergenic 45.0%
CATTTGAATCCGGTTCAGAC+CGG - chr4_4:57476151-57476170 None:intergenic 45.0%
!!! GGTCTGAACCGGGTTTTTTT+TGG + chr4_4:57476256-57476275 Msa0690050:three_prime_UTR 45.0%
! AGTGAGTGACTAGTCAGCTA+AGG + chr4_4:57476303-57476322 Msa0690050:three_prime_UTR 45.0%
TAGTCAGCTAAGGCAGGTAA+CGG + chr4_4:57476313-57476332 Msa0690050:three_prime_UTR 45.0%
!! TAAGGCAGGTAACGGAGATT+AGG + chr4_4:57476321-57476340 Msa0690050:three_prime_UTR 45.0%
GTGCATGACTCTCTATGAGA+TGG + chr4_4:57474654-57474673 Msa0690050:five_prime_UTR 45.0%
!! CGAAACAAGCGTTGAGGTAT+TGG - chr4_4:57474790-57474809 None:intergenic 45.0%
!! GGTTTGGAAGCACTGAAATG+AGG - chr4_4:57474814-57474833 None:intergenic 45.0%
AACCGCAAGAGAGTTTCCTT+TGG - chr4_4:57474835-57474854 None:intergenic 45.0%
!! AAGCGTTGAAACCAAGCTTG+AGG + chr4_4:57475050-57475069 Msa0690050:CDS 45.0%
GAAAAAAACAGCACCACCTC+AGG + chr4_4:57475256-57475275 Msa0690050:CDS 45.0%
TTCATGTTCAGAACCTGAGG+TGG - chr4_4:57475272-57475291 None:intergenic 45.0%
TCGTTCATGTTCAGAACCTG+AGG - chr4_4:57475275-57475294 None:intergenic 45.0%
!! GAGTCTGACTCCATTTTTGC+CGG + chr4_4:57475349-57475368 Msa0690050:CDS 45.0%
TGCTAAACCACCGGCAAAAA+TGG - chr4_4:57475362-57475381 None:intergenic 45.0%
GTCGTGTTAGTGACATGTGT+GGG - chr4_4:57475496-57475515 None:intergenic 45.0%
TGTCGTGTTAGTGACATGTG+TGG - chr4_4:57475497-57475516 None:intergenic 45.0%
ACTAGTATCATGTGTCCGGT+CGG + chr4_4:57475558-57475577 Msa0690050:intron 45.0%
TATTGTATCCAGTTCAGGCC+CGG + chr4_4:57475716-57475735 Msa0690050:CDS 45.0%
!! GCTGGGAATAAGCATTGGTT+GGG - chr4_4:57475765-57475784 None:intergenic 45.0%
!! AGCTGGGAATAAGCATTGGT+TGG - chr4_4:57475766-57475785 None:intergenic 45.0%
AGAGAGCTGGGAATAAGCAT+TGG - chr4_4:57475770-57475789 None:intergenic 45.0%
! TCTGCGGATTATAGAGAGCT+GGG - chr4_4:57475782-57475801 None:intergenic 45.0%
! TTCTGCGGATTATAGAGAGC+TGG - chr4_4:57475783-57475802 None:intergenic 45.0%
! TGGTTGTTCTAGGCTTTCTG+CGG - chr4_4:57475798-57475817 None:intergenic 45.0%
! ACTGTGGCGTTTTCTGAACA+TGG - chr4_4:57475945-57475964 None:intergenic 45.0%
ATGTTCAGAAAACGCCACAG+TGG + chr4_4:57475944-57475963 Msa0690050:CDS 45.0%
! CATAGTGTTTTCGGTCCAAG+CGG - chr4_4:57475979-57475998 None:intergenic 45.0%
TGTGGTGTTCGGTTTAAGTC+CGG + chr4_4:57476006-57476025 Msa0690050:CDS 45.0%
TGCATGCAGGTCTATACTCA+GGG - chr4_4:57476041-57476060 None:intergenic 45.0%
GAATTTCACCGGAAAACGTC+GGG - chr4_4:57476065-57476084 None:intergenic 45.0%
CATTTGAATCCGGTTCAGAC+CGG - chr4_4:57476151-57476170 None:intergenic 45.0%
!!! GGTCTGAACCGGGTTTTTTT+TGG + chr4_4:57476256-57476275 Msa0690050:three_prime_UTR 45.0%
! AGTGAGTGACTAGTCAGCTA+AGG + chr4_4:57476303-57476322 Msa0690050:three_prime_UTR 45.0%
TAGTCAGCTAAGGCAGGTAA+CGG + chr4_4:57476313-57476332 Msa0690050:three_prime_UTR 45.0%
!! TAAGGCAGGTAACGGAGATT+AGG + chr4_4:57476321-57476340 Msa0690050:three_prime_UTR 45.0%
CTTCTTCTTCTTCCTCCTCC+TGG - chr4_4:57475231-57475250 None:intergenic 50.0%
! TCCACAACATTTTCCGGTGC+CGG + chr4_4:57475319-57475338 Msa0690050:CDS 50.0%
!! TCTGACTCCATTTTTGCCGG+TGG + chr4_4:57475352-57475371 Msa0690050:CDS 50.0%
TTCTCAGGCCGATGATGTTG+CGG + chr4_4:57475642-57475661 Msa0690050:intron 50.0%
GGAATGGGTGTCTCACTTTG+TGG + chr4_4:57475669-57475688 Msa0690050:CDS 50.0%
ATTGTATCCAGTTCAGGCCC+GGG + chr4_4:57475717-57475736 Msa0690050:CDS 50.0%
!! GAATAAGCATTGGTTGGGCC+CGG - chr4_4:57475760-57475779 None:intergenic 50.0%
ACAGTTGGGCCTTCTTGTCT+TGG - chr4_4:57475818-57475837 None:intergenic 50.0%
GAAAAAGCCCGAAGCCCAAA+CGG + chr4_4:57475885-57475904 Msa0690050:CDS 50.0%
AAAAAGCCCGAAGCCCAAAC+GGG + chr4_4:57475886-57475905 Msa0690050:CDS 50.0%
! GCGTTTTCTGAACATGGCAG+TGG - chr4_4:57475939-57475958 None:intergenic 50.0%
GTGTTCGGTTTAAGTCCGGT+CGG + chr4_4:57476010-57476029 Msa0690050:CDS 50.0%
ATACTCAGGGAAAAGCCGAC+CGG - chr4_4:57476028-57476047 None:intergenic 50.0%
CTGCATGCAGGTCTATACTC+AGG - chr4_4:57476042-57476061 None:intergenic 50.0%
TCATTCGAACAGCCACCGTA+AGG + chr4_4:57476083-57476102 Msa0690050:CDS 50.0%
! GAACAGCCACCGTAAGGTTT+TGG + chr4_4:57476089-57476108 Msa0690050:CDS 50.0%
!!! AGGTTTTGGAAATGAGGCGG+AGG + chr4_4:57476103-57476122 Msa0690050:CDS 50.0%
TTTGGAAATGAGGCGGAGGA+AGG + chr4_4:57476107-57476126 Msa0690050:CDS 50.0%
CGGTCTGAACCGGATTCAAA+TGG + chr4_4:57476149-57476168 Msa0690050:CDS 50.0%
! GTGAACCAACTGGTCTGAAC+CGG + chr4_4:57476245-57476264 Msa0690050:three_prime_UTR 50.0%
! TGAACCAACTGGTCTGAACC+GGG + chr4_4:57476246-57476265 Msa0690050:three_prime_UTR 50.0%
AAAACCCGGTTCAGACCAGT+TGG - chr4_4:57476253-57476272 None:intergenic 50.0%
! AGTGACTAGTCAGCTAAGGC+AGG + chr4_4:57476307-57476326 Msa0690050:three_prime_UTR 50.0%
CTTCTTCTTCTTCCTCCTCC+TGG - chr4_4:57475231-57475250 None:intergenic 50.0%
! TCCACAACATTTTCCGGTGC+CGG + chr4_4:57475319-57475338 Msa0690050:CDS 50.0%
!! TCTGACTCCATTTTTGCCGG+TGG + chr4_4:57475352-57475371 Msa0690050:CDS 50.0%
TTCTCAGGCCGATGATGTTG+CGG + chr4_4:57475642-57475661 Msa0690050:intron 50.0%
GGAATGGGTGTCTCACTTTG+TGG + chr4_4:57475669-57475688 Msa0690050:CDS 50.0%
ATTGTATCCAGTTCAGGCCC+GGG + chr4_4:57475717-57475736 Msa0690050:CDS 50.0%
!! GAATAAGCATTGGTTGGGCC+CGG - chr4_4:57475760-57475779 None:intergenic 50.0%
ACAGTTGGGCCTTCTTGTCT+TGG - chr4_4:57475818-57475837 None:intergenic 50.0%
GAAAAAGCCCGAAGCCCAAA+CGG + chr4_4:57475885-57475904 Msa0690050:CDS 50.0%
AAAAAGCCCGAAGCCCAAAC+GGG + chr4_4:57475886-57475905 Msa0690050:CDS 50.0%
! GCGTTTTCTGAACATGGCAG+TGG - chr4_4:57475939-57475958 None:intergenic 50.0%
GTGTTCGGTTTAAGTCCGGT+CGG + chr4_4:57476010-57476029 Msa0690050:CDS 50.0%
ATACTCAGGGAAAAGCCGAC+CGG - chr4_4:57476028-57476047 None:intergenic 50.0%
CTGCATGCAGGTCTATACTC+AGG - chr4_4:57476042-57476061 None:intergenic 50.0%
TCATTCGAACAGCCACCGTA+AGG + chr4_4:57476083-57476102 Msa0690050:CDS 50.0%
! GAACAGCCACCGTAAGGTTT+TGG + chr4_4:57476089-57476108 Msa0690050:CDS 50.0%
!!! AGGTTTTGGAAATGAGGCGG+AGG + chr4_4:57476103-57476122 Msa0690050:CDS 50.0%
TTTGGAAATGAGGCGGAGGA+AGG + chr4_4:57476107-57476126 Msa0690050:CDS 50.0%
CGGTCTGAACCGGATTCAAA+TGG + chr4_4:57476149-57476168 Msa0690050:CDS 50.0%
! GTGAACCAACTGGTCTGAAC+CGG + chr4_4:57476245-57476264 Msa0690050:three_prime_UTR 50.0%
! TGAACCAACTGGTCTGAACC+GGG + chr4_4:57476246-57476265 Msa0690050:three_prime_UTR 50.0%
AAAACCCGGTTCAGACCAGT+TGG - chr4_4:57476253-57476272 None:intergenic 50.0%
! AGTGACTAGTCAGCTAAGGC+AGG + chr4_4:57476307-57476326 Msa0690050:three_prime_UTR 50.0%
! TGAGGGCGAAACAAGCGTTG+AGG - chr4_4:57474796-57474815 None:intergenic 55.0%
! TCCGGCACCGGAAAATGTTG+TGG - chr4_4:57475323-57475342 None:intergenic 55.0%
!! ACATTTTCCGGTGCCGGAGA+CGG + chr4_4:57475325-57475344 Msa0690050:CDS 55.0%
TGCCGGTGGTTTAGCAGTTC+CGG + chr4_4:57475366-57475385 Msa0690050:CDS 55.0%
CACCGGAACTGCTAAACCAC+CGG - chr4_4:57475371-57475390 None:intergenic 55.0%
GACACGACACAAACACCGAC+CGG - chr4_4:57475576-57475595 None:intergenic 55.0%
GGCCGATGATGTTGCGGATT+TGG + chr4_4:57475648-57475667 Msa0690050:intron 55.0%
GAAGGCCCAACTGTAACGTG+TGG + chr4_4:57475824-57475843 Msa0690050:CDS 55.0%
AAACTGAGCCCCACCCGTTT+GGG - chr4_4:57475902-57475921 None:intergenic 55.0%
GTGGGGCTCAGTTTCAACGA+CGG + chr4_4:57475908-57475927 Msa0690050:CDS 55.0%
AAAACGCCACAGTGGAGAGC+TGG + chr4_4:57475952-57475971 Msa0690050:CDS 55.0%
GAGGAAGGAGGTGGATGAAC+CGG + chr4_4:57476122-57476141 Msa0690050:CDS 55.0%
! GAGGTGGATGAACCGGTTTC+CGG + chr4_4:57476129-57476148 Msa0690050:CDS 55.0%
! AACCGGTTTCCGGTCTGAAC+CGG + chr4_4:57476139-57476158 Msa0690050:CDS 55.0%
ATCCGGTTCAGACCGGAAAC+CGG - chr4_4:57476144-57476163 None:intergenic 55.0%
! TGAGGGCGAAACAAGCGTTG+AGG - chr4_4:57474796-57474815 None:intergenic 55.0%
! TCCGGCACCGGAAAATGTTG+TGG - chr4_4:57475323-57475342 None:intergenic 55.0%
!! ACATTTTCCGGTGCCGGAGA+CGG + chr4_4:57475325-57475344 Msa0690050:CDS 55.0%
TGCCGGTGGTTTAGCAGTTC+CGG + chr4_4:57475366-57475385 Msa0690050:CDS 55.0%
CACCGGAACTGCTAAACCAC+CGG - chr4_4:57475371-57475390 None:intergenic 55.0%
GACACGACACAAACACCGAC+CGG - chr4_4:57475576-57475595 None:intergenic 55.0%
GGCCGATGATGTTGCGGATT+TGG + chr4_4:57475648-57475667 Msa0690050:intron 55.0%
GAAGGCCCAACTGTAACGTG+TGG + chr4_4:57475824-57475843 Msa0690050:CDS 55.0%
AAACTGAGCCCCACCCGTTT+GGG - chr4_4:57475902-57475921 None:intergenic 55.0%
GTGGGGCTCAGTTTCAACGA+CGG + chr4_4:57475908-57475927 Msa0690050:CDS 55.0%
AAAACGCCACAGTGGAGAGC+TGG + chr4_4:57475952-57475971 Msa0690050:CDS 55.0%
GAGGAAGGAGGTGGATGAAC+CGG + chr4_4:57476122-57476141 Msa0690050:CDS 55.0%
! GAGGTGGATGAACCGGTTTC+CGG + chr4_4:57476129-57476148 Msa0690050:CDS 55.0%
! AACCGGTTTCCGGTCTGAAC+CGG + chr4_4:57476139-57476158 Msa0690050:CDS 55.0%
ATCCGGTTCAGACCGGAAAC+CGG - chr4_4:57476144-57476163 None:intergenic 55.0%
GAAACTGAGCCCCACCCGTT+TGG - chr4_4:57475903-57475922 None:intergenic 60.0%
GAAAACGTCGGGCTGCATGC+AGG - chr4_4:57476054-57476073 None:intergenic 60.0%
! GCATGCAGCCCGACGTTTTC+CGG + chr4_4:57476054-57476073 Msa0690050:CDS 60.0%
GGAAATGAGGCGGAGGAAGG+AGG + chr4_4:57476110-57476129 Msa0690050:CDS 60.0%
AATGAGGCGGAGGAAGGAGG+TGG + chr4_4:57476113-57476132 Msa0690050:CDS 60.0%
GAAACTGAGCCCCACCCGTT+TGG - chr4_4:57475903-57475922 None:intergenic 60.0%
GAAAACGTCGGGCTGCATGC+AGG - chr4_4:57476054-57476073 None:intergenic 60.0%
! GCATGCAGCCCGACGTTTTC+CGG + chr4_4:57476054-57476073 Msa0690050:CDS 60.0%
GGAAATGAGGCGGAGGAAGG+AGG + chr4_4:57476110-57476129 Msa0690050:CDS 60.0%
AATGAGGCGGAGGAAGGAGG+TGG + chr4_4:57476113-57476132 Msa0690050:CDS 60.0%
GGAGTCAGACTCGCCGTCTC+CGG - chr4_4:57475341-57475360 None:intergenic 65.0%
!! TCTAGGTTCCGGTTCGGCCC+GGG - chr4_4:57475737-57475756 None:intergenic 65.0%
!! GTCTAGGTTCCGGTTCGGCC+CGG - chr4_4:57475738-57475757 None:intergenic 65.0%
GGCCGAACCGGAACCTAGAC+CGG + chr4_4:57475738-57475757 Msa0690050:CDS 65.0%
GCCGAACCGGAACCTAGACC+GGG + chr4_4:57475739-57475758 Msa0690050:CDS 65.0%
GCCCGGTCTAGGTTCCGGTT+CGG - chr4_4:57475743-57475762 None:intergenic 65.0%
GTTGGGCCCGGTCTAGGTTC+CGG - chr4_4:57475748-57475767 None:intergenic 65.0%
!! GCATTGGTTGGGCCCGGTCT+AGG - chr4_4:57475754-57475773 None:intergenic 65.0%
AAGCCCGAAGCCCAAACGGG+TGG + chr4_4:57475889-57475908 Msa0690050:CDS 65.0%
AGCCCGAAGCCCAAACGGGT+GGG + chr4_4:57475890-57475909 Msa0690050:CDS 65.0%
AGCCCCACCCGTTTGGGCTT+CGG - chr4_4:57475896-57475915 None:intergenic 65.0%
AGCGGACCAGCTCTCCACTG+TGG - chr4_4:57475961-57475980 None:intergenic 65.0%
CAGTGGAGAGCTGGTCCGCT+TGG + chr4_4:57475961-57475980 Msa0690050:CDS 65.0%
GGAGTCAGACTCGCCGTCTC+CGG - chr4_4:57475341-57475360 None:intergenic 65.0%
!! TCTAGGTTCCGGTTCGGCCC+GGG - chr4_4:57475737-57475756 None:intergenic 65.0%
!! GTCTAGGTTCCGGTTCGGCC+CGG - chr4_4:57475738-57475757 None:intergenic 65.0%
GGCCGAACCGGAACCTAGAC+CGG + chr4_4:57475738-57475757 Msa0690050:CDS 65.0%
GCCGAACCGGAACCTAGACC+GGG + chr4_4:57475739-57475758 Msa0690050:CDS 65.0%
GCCCGGTCTAGGTTCCGGTT+CGG - chr4_4:57475743-57475762 None:intergenic 65.0%
GTTGGGCCCGGTCTAGGTTC+CGG - chr4_4:57475748-57475767 None:intergenic 65.0%
!! GCATTGGTTGGGCCCGGTCT+AGG - chr4_4:57475754-57475773 None:intergenic 65.0%
AAGCCCGAAGCCCAAACGGG+TGG + chr4_4:57475889-57475908 Msa0690050:CDS 65.0%
AGCCCGAAGCCCAAACGGGT+GGG + chr4_4:57475890-57475909 Msa0690050:CDS 65.0%
AGCCCCACCCGTTTGGGCTT+CGG - chr4_4:57475896-57475915 None:intergenic 65.0%
AGCGGACCAGCTCTCCACTG+TGG - chr4_4:57475961-57475980 None:intergenic 65.0%
CAGTGGAGAGCTGGTCCGCT+TGG + chr4_4:57475961-57475980 Msa0690050:CDS 65.0%
AGACTCGCCGTCTCCGGCAC+CGG - chr4_4:57475335-57475354 None:intergenic 70.0%
AGTTCAGGCCCGGGCCGAAC+CGG + chr4_4:57475726-57475745 Msa0690050:CDS 70.0%
GCCCGAAGCCCAAACGGGTG+GGG + chr4_4:57475891-57475910 Msa0690050:CDS 70.0%
GCCCCACCCGTTTGGGCTTC+GGG - chr4_4:57475895-57475914 None:intergenic 70.0%
AGACTCGCCGTCTCCGGCAC+CGG - chr4_4:57475335-57475354 None:intergenic 70.0%
AGTTCAGGCCCGGGCCGAAC+CGG + chr4_4:57475726-57475745 Msa0690050:CDS 70.0%
GCCCGAAGCCCAAACGGGTG+GGG + chr4_4:57475891-57475910 Msa0690050:CDS 70.0%
GCCCCACCCGTTTGGGCTTC+GGG - chr4_4:57475895-57475914 None:intergenic 70.0%
GGTTCGGCCCGGGCCTGAAC+TGG - chr4_4:57475727-57475746 None:intergenic 75.0%
GGTTCGGCCCGGGCCTGAAC+TGG - chr4_4:57475727-57475746 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 57474654 57476594 57474654 ID=Msa0690050;Name=Msa0690050
chr4_4 mRNA 57474654 57476594 57474654 ID=Msa0690050-mRNA-1;Parent=Msa0690050;Name=Msa0690050-mRNA-1;_AED=0.07;_eAED=0.07;_QI=257|1|1|1|0.5|0.33|3|412|296
chr4_4 exon 57474654 57474897 57474654 ID=Msa0690050-mRNA-1:exon:15307;Parent=Msa0690050-mRNA-1
chr4_4 exon 57475018 57475387 57475018 ID=Msa0690050-mRNA-1:exon:15308;Parent=Msa0690050-mRNA-1
chr4_4 exon 57475649 57476594 57475649 ID=Msa0690050-mRNA-1:exon:15309;Parent=Msa0690050-mRNA-1
chr4_4 five_prime_UTR 57474654 57474897 57474654 ID=Msa0690050-mRNA-1:five_prime_utr;Parent=Msa0690050-mRNA-1
chr4_4 five_prime_UTR 57475018 57475030 57475018 ID=Msa0690050-mRNA-1:five_prime_utr;Parent=Msa0690050-mRNA-1
chr4_4 CDS 57475031 57475387 57475031 ID=Msa0690050-mRNA-1:cds;Parent=Msa0690050-mRNA-1
chr4_4 CDS 57475649 57476182 57475649 ID=Msa0690050-mRNA-1:cds;Parent=Msa0690050-mRNA-1
chr4_4 three_prime_UTR 57476183 57476594 57476183 ID=Msa0690050-mRNA-1:three_prime_utr;Parent=Msa0690050-mRNA-1
Gene Sequence

>Msa0690050

ATGGAAGTTGTTGTAGCGGAAGCGTTGAAACCAAGCTTGAGGACAGAATCTATTTTCCAACAAACAATTTGTGAAGAGATTTTGTGTTTGAACGCAAACAACGTTGTTGTCGGAGAAGATTTTTCTGTCGACGACTTGCTTGATTTTTCCAACGGTGAATTTCAACATGGTTCTGTTGGAAAAGAAATTGATGTTTACCAGGAGGAGGAAGAAGAAGAAGAACATGAAAAAAACAGCACCACCTCAGGTTCTGAACATGAACGAACAGAAGATGACAACAATTCAAATTCCACAACATTTTCCGGTGCCGGAGACGGCGAGTCTGACTCCATTTTTGCCGGTGGTTTAGCAGTTCCGGCCGATGATGTTGCGGATTTGGAATGGGTGTCTCACTTTGTGGACGATTCTGTACCAGAACTCTCTCTATTGTATCCAGTTCAGGCCCGGGCCGAACCGGAACCTAGACCGGGCCCAACCAATGCTTATTCCCAGCTCTCTATAATCCGCAGAAAGCCTAGAACAACCAAGACAAGAAGGCCCAACTGTAACGTGTGGATTTTTAACCCTATACTCTTTTCAGCAAAGAAGCAGAGGAAAAAGCCCGAAGCCCAAACGGGTGGGGCTCAGTTTCAACGACGGTGCAGCCACTGCCATGTTCAGAAAACGCCACAGTGGAGAGCTGGTCCGCTTGGACCGAAAACACTATGTAACGCTTGTGGTGTTCGGTTTAAGTCCGGTCGGCTTTTCCCTGAGTATAGACCTGCATGCAGCCCGACGTTTTCCGGTGAAATTCATTCGAACAGCCACCGTAAGGTTTTGGAAATGAGGCGGAGGAAGGAGGTGGATGAACCGGTTTCCGGTCTGAACCGGATTCAAATGGTCACGAGTTGA
Protein sequence

>Msa0690050

MEVVVAEALKPSLRTESIFQQTICEEILCLNANNVVVGEDFSVDDLLDFSNGEFQHGSVGKEIDVYQEEEEEEEHEKNSTTSGSEHERTEDDNNSNSTTFSGAGDGESDSIFAGGLAVPADDVADLEWVSHFVDDSVPELSLLYPVQARAEPEPRPGPTNAYSQLSIIRRKPRTTKTRRPNCNVWIFNPILFSAKKQRKKPEAQTGGAQFQRRCSHCHVQKTPQWRAGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSGEIHSNSHRKVLEMRRRKEVDEPVSGLNRIQMVTS*