AlfalfaGEDB | Msa0690050

M. sativa cultivar zhongmu-4 / Msa0690050

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0690050	XP_003607047.1	96.959	296	8	1	1	296	1	295	0.0	596

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0690050	sp\|O65515\|GATA7_ARATH	47.082	257	90	10	40	282	10	234	1.38e-55	182

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0690050	G7JJU1	96.959	296	8	1	1	296	1	295	0.0	596

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TFs/TRs:

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Gene ID	Type	Classification
Msa0690050	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0690050	MtrunA17_Chr4g0035891	96.959	296	8	1	1	296	1	295	0.0	596
Msa0690050	MtrunA17_Chr3g0145121	53.292	319	107	8	1	296	1	300	1.42e-97	289
Msa0690050	MtrunA17_Chr8g0372291	39.159	309	138	10	1	281	1	287	9.13e-52	171
Msa0690050	MtrunA17_Chr5g0404981	40.282	355	137	11	1	296	51	389	2.70e-50	171
Msa0690050	MtrunA17_Chr3g0140331	38.406	276	120	9	36	281	67	322	4.47e-45	156
Msa0690050	MtrunA17_Chr8g0340401	38.869	283	113	9	39	281	33	295	2.26e-43	151
Msa0690050	MtrunA17_Chr1g0146231	34.921	315	141	12	15	281	5	303	1.09e-42	149
Msa0690050	MtrunA17_Chr1g0199671	75.714	70	17	0	207	276	237	306	1.33e-34	128
Msa0690050	MtrunA17_Chr6g0461591	81.538	65	12	0	212	276	192	256	2.08e-34	125
Msa0690050	MtrunA17_Chr7g0253101	80.000	65	13	0	212	276	188	252	2.24e-33	123

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0690050	AT4G36240.1	47.082	257	90	10	40	282	10	234	1.40e-56	182
Msa0690050	AT5G66320.2	35.838	346	139	10	8	291	5	329	2.41e-51	172
Msa0690050	AT5G66320.1	35.838	346	139	10	8	291	5	329	2.41e-51	172
Msa0690050	AT4G34680.1	41.034	290	114	11	6	283	7	251	2.03e-49	165
Msa0690050	AT4G34680.2	41.034	290	114	11	6	283	7	251	2.03e-49	165
Msa0690050	AT5G25830.1	38.047	297	108	12	40	281	13	288	1.49e-44	154
Msa0690050	AT3G60530.1	47.778	180	73	5	112	283	63	229	2.33e-43	149
Msa0690050	AT4G32890.1	36.331	278	115	11	39	281	16	266	4.85e-43	150
Msa0690050	AT2G45050.1	44.845	194	73	4	112	281	65	248	5.01e-43	148
Msa0690050	AT3G51080.1	69.231	91	22	2	212	296	221	311	2.52e-38	137

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Find 120 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACTATGTAACGCTTG+TGG	0.656575	4_4:+57475988	Msa0690050:CDS
AAAACCCGGTTCAGACCAGT+TGG	0.597362	4_4:-57476250	None:intergenic
AAAACGCCACAGTGGAGAGC+TGG	0.532352	4_4:+57475952	Msa0690050:CDS
AAAAGAAATTGATGTTTACC+AGG	0.530934	4_4:+57475210	Msa0690050:CDS
AAAATCCACACGTTACAGTT+GGG	0.498357	4_4:-57475829	None:intergenic
AAACATGGAAGTTGTTGTAG+CGG	0.614309	4_4:+57475027	Msa0690050:exon
AAACTGAGCCCCACCCGTTT+GGG	0.350163	4_4:-57475899	None:intergenic
AAATTTAGTAGTAGTACTAG+TGG	0.641874	4_4:+57474679	Msa0690050:five_prime_UTR
AACCAAAGGAAACTCTCTTG+CGG	0.609093	4_4:+57474830	Msa0690050:five_prime_UTR
AACCGCAAGAGAGTTTCCTT+TGG	0.471900	4_4:-57474832	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTCTTCACAAATTGTTTGT+TGG	-	chr4_4:57475090-57475109	None:intergenic	30.0%
AATTCATTACCTTTGTAGCA+TGG	+	chr4_4:57475442-57475461	Msa0690050:intron	30.0%
ATTAACTGCACTGAGAAAAT+GGG	-	chr4_4:57476376-57476395	None:intergenic	30.0%
AATTAACTGCACTGAGAAAA+TGG	-	chr4_4:57476377-57476396	None:intergenic	30.0%
TCTCTTCACAAATTGTTTGT+TGG	-	chr4_4:57475090-57475109	None:intergenic	30.0%
AATTCATTACCTTTGTAGCA+TGG	+	chr4_4:57475442-57475461	Msa0690050:intron	30.0%
ATTAACTGCACTGAGAAAAT+GGG	-	chr4_4:57476376-57476395	None:intergenic	30.0%
AATTAACTGCACTGAGAAAA+TGG	-	chr4_4:57476377-57476396	None:intergenic	30.0%
AAACATGGAAGTTGTTGTAG+CGG	+	chr4_4:57475027-57475046	Msa0690050:exon	35.0%
AGAAATTGATGTTTACCAGG+AGG	+	chr4_4:57475213-57475232	Msa0690050:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	57474654	57476594	57474654	ID=Msa0690050;Name=Msa0690050
chr4_4	mRNA	57474654	57476594	57474654	ID=Msa0690050-mRNA-1;Parent=Msa0690050;Name=Msa0690050-mRNA-1;_AED=0.07;_eAED=0.07;_QI=257\|1\|1\|1\|0.5\|0.33\|3\|412\|296
chr4_4	exon	57474654	57474897	57474654	ID=Msa0690050-mRNA-1:exon:15307;Parent=Msa0690050-mRNA-1
chr4_4	exon	57475018	57475387	57475018	ID=Msa0690050-mRNA-1:exon:15308;Parent=Msa0690050-mRNA-1
chr4_4	exon	57475649	57476594	57475649	ID=Msa0690050-mRNA-1:exon:15309;Parent=Msa0690050-mRNA-1
chr4_4	five_prime_UTR	57474654	57474897	57474654	ID=Msa0690050-mRNA-1:five_prime_utr;Parent=Msa0690050-mRNA-1
chr4_4	five_prime_UTR	57475018	57475030	57475018	ID=Msa0690050-mRNA-1:five_prime_utr;Parent=Msa0690050-mRNA-1
chr4_4	CDS	57475031	57475387	57475031	ID=Msa0690050-mRNA-1:cds;Parent=Msa0690050-mRNA-1
chr4_4	CDS	57475649	57476182	57475649	ID=Msa0690050-mRNA-1:cds;Parent=Msa0690050-mRNA-1
chr4_4	three_prime_UTR	57476183	57476594	57476183	ID=Msa0690050-mRNA-1:three_prime_utr;Parent=Msa0690050-mRNA-1

Gene Sequence

>Msa0690050

ATGGAAGTTGTTGTAGCGGAAGCGTTGAAACCAAGCTTGAGGACAGAATCTATTTTCCAACAAACAATTTGTGAAGAGATTTTGTGTTTGAACGCAAACAACGTTGTTGTCGGAGAAGATTTTTCTGTCGACGACTTGCTTGATTTTTCCAACGGTGAATTTCAACATGGTTCTGTTGGAAAAGAAATTGATGTTTACCAGGAGGAGGAAGAAGAAGAAGAACATGAAAAAAACAGCACCACCTCAGGTTCTGAACATGAACGAACAGAAGATGACAACAATTCAAATTCCACAACATTTTCCGGTGCCGGAGACGGCGAGTCTGACTCCATTTTTGCCGGTGGTTTAGCAGTTCCGGCCGATGATGTTGCGGATTTGGAATGGGTGTCTCACTTTGTGGACGATTCTGTACCAGAACTCTCTCTATTGTATCCAGTTCAGGCCCGGGCCGAACCGGAACCTAGACCGGGCCCAACCAATGCTTATTCCCAGCTCTCTATAATCCGCAGAAAGCCTAGAACAACCAAGACAAGAAGGCCCAACTGTAACGTGTGGATTTTTAACCCTATACTCTTTTCAGCAAAGAAGCAGAGGAAAAAGCCCGAAGCCCAAACGGGTGGGGCTCAGTTTCAACGACGGTGCAGCCACTGCCATGTTCAGAAAACGCCACAGTGGAGAGCTGGTCCGCTTGGACCGAAAACACTATGTAACGCTTGTGGTGTTCGGTTTAAGTCCGGTCGGCTTTTCCCTGAGTATAGACCTGCATGCAGCCCGACGTTTTCCGGTGAAATTCATTCGAACAGCCACCGTAAGGTTTTGGAAATGAGGCGGAGGAAGGAGGTGGATGAACCGGTTTCCGGTCTGAACCGGATTCAAATGGTCACGAGTTGA

Protein sequence

>Msa0690050

MEVVVAEALKPSLRTESIFQQTICEEILCLNANNVVVGEDFSVDDLLDFSNGEFQHGSVGKEIDVYQEEEEEEEHEKNSTTSGSEHERTEDDNNSNSTTFSGAGDGESDSIFAGGLAVPADDVADLEWVSHFVDDSVPELSLLYPVQARAEPEPRPGPTNAYSQLSIIRRKPRTTKTRRPNCNVWIFNPILFSAKKQRKKPEAQTGGAQFQRRCSHCHVQKTPQWRAGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSGEIHSNSHRKVLEMRRRKEVDEPVSGLNRIQMVTS*