AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0691040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691040 MtrunA17_Chr4g0039971 87.283 346 12 1 43 356 1 346 0.0 570
Msa0691040 MtrunA17_Chr5g0395281 45.714 350 102 11 44 356 1 299 1.63e-82 253
Msa0691040 MtrunA17_Chr3g0115821 41.975 324 112 14 44 306 1 309 2.07e-58 192
Msa0691040 MtrunA17_Chr5g0410961 37.673 361 150 10 44 356 1 334 2.17e-58 192
Msa0691040 MtrunA17_Chr2g0323411 38.909 275 118 4 44 271 1 272 1.48e-48 166
Msa0691040 MtrunA17_Chr6g0453471 44.221 199 77 2 44 208 1 199 4.93e-48 166
Msa0691040 MtrunA17_Chr4g0048511 54.412 136 29 2 44 146 1 136 9.12e-46 160
Msa0691040 MtrunA17_Chr5g0395231 40.602 266 120 11 98 356 14 248 2.40e-45 155
Msa0691040 MtrunA17_Chr2g0281071 55.385 130 25 2 44 140 1 130 1.01e-44 157
Msa0691040 MtrunA17_Chr7g0217741 46.154 169 50 2 44 180 1 160 2.26e-44 155
Msa0691040 MtrunA17_Chr4g0042671 54.545 132 28 1 44 143 1 132 3.97e-44 157
Msa0691040 MtrunA17_Chr5g0434571 53.285 137 32 1 35 139 28 164 9.59e-43 152
Msa0691040 MtrunA17_Chr3g0110351 55.906 127 24 1 44 138 1 127 4.62e-41 146
Msa0691040 MtrunA17_Chr4g0057031 53.125 128 28 1 44 139 1 128 6.76e-40 142
Msa0691040 MtrunA17_Chr6g0452271 44.966 149 50 1 44 160 1 149 2.49e-39 142
Msa0691040 MtrunA17_Chr4g0037141 50.781 128 31 1 44 139 1 128 2.97e-39 140
Msa0691040 MtrunA17_Chr7g0261281 56.780 118 19 1 44 129 1 118 1.78e-38 138
Msa0691040 MtrunA17_Chr7g0228891 46.286 175 51 4 44 182 1 168 1.86e-38 138
Msa0691040 MtrunA17_Chr1g0187761 56.780 118 19 1 44 129 1 118 3.00e-38 137
Msa0691040 MtrunA17_Chr7g0270891 39.394 198 79 3 44 204 1 194 4.01e-38 140
Msa0691040 MtrunA17_Chr1g0203411 54.237 118 22 1 44 129 1 118 7.66e-38 137
Msa0691040 MtrunA17_Chr3g0121241 52.419 124 27 1 48 139 35 158 1.33e-37 137
Msa0691040 MtrunA17_Chr3g0131121 51.181 127 30 1 44 138 1 127 3.73e-37 135
Msa0691040 MtrunA17_Chr1g0167691 56.410 117 19 1 44 128 1 117 5.05e-37 134
Msa0691040 MtrunA17_Chr1g0167661 56.410 117 19 1 44 128 1 117 6.01e-37 134
Msa0691040 MtrunA17_Chr4g0068061 54.310 116 21 1 44 127 1 116 1.26e-36 135
Msa0691040 MtrunA17_Chr1g0193371 50.781 128 31 1 44 139 1 128 1.45e-36 135
Msa0691040 MtrunA17_Chr8g0385321 49.219 128 33 1 44 139 1 128 3.43e-36 133
Msa0691040 MtrunA17_Chr7g0274581 51.724 116 24 1 44 127 1 116 3.68e-36 130
Msa0691040 MtrunA17_Chr1g0193801 50.000 128 32 1 44 139 1 128 7.08e-36 134
Msa0691040 MtrunA17_Chr4g0058631 49.219 128 33 1 44 139 1 128 4.50e-35 131
Msa0691040 MtrunA17_Chr3g0103281 46.528 144 42 2 44 155 1 141 5.24e-35 130
Msa0691040 MtrunA17_Chr7g0217221 52.586 116 23 1 44 127 1 116 6.53e-35 129
Msa0691040 MtrunA17_Chr7g0275911 51.724 116 24 1 44 127 1 116 7.24e-34 125
Msa0691040 MtrunA17_Chr3g0117091 46.617 133 39 1 44 144 1 133 7.31e-34 128
Msa0691040 MtrunA17_Chr7g0254411 49.600 125 29 2 44 134 1 125 1.91e-33 126
Msa0691040 MtrunA17_Chr7g0269831 52.586 116 23 1 44 127 1 116 2.72e-33 126
Msa0691040 MtrunA17_Chr5g0435101 43.200 125 39 1 46 138 2 126 3.07e-33 122
Msa0691040 MtrunA17_Chr1g0211161 44.928 138 44 1 43 148 1 138 6.30e-33 122
Msa0691040 MtrunA17_Chr3g0092401 48.333 120 30 1 43 130 1 120 6.89e-33 124
Msa0691040 MtrunA17_Chr4g0060721 49.573 117 27 1 43 127 1 117 7.70e-33 125
Msa0691040 MtrunA17_Chr4g0028311 43.871 155 48 4 44 165 1 149 9.55e-33 124
Msa0691040 MtrunA17_Chr8g0346561 50.862 116 25 1 44 127 1 116 1.03e-32 124
Msa0691040 MtrunA17_Chr4g0070611 50.862 116 25 1 44 127 1 116 3.63e-32 122
Msa0691040 MtrunA17_Chr1g0194951 47.692 130 36 1 44 141 1 130 3.75e-32 124
Msa0691040 MtrunA17_Chr7g0271241 51.562 128 30 1 44 139 1 128 4.04e-32 124
Msa0691040 MtrunA17_Chr2g0309911 47.107 121 32 1 49 137 5 125 4.06e-32 122
Msa0691040 MtrunA17_Chr4g0070641 50.862 116 25 1 44 127 1 116 8.48e-32 117
Msa0691040 MtrunA17_Chr1g0151941 47.287 129 33 3 44 137 1 129 1.10e-31 119
Msa0691040 MtrunA17_Chr3g0135311 39.474 190 62 5 44 200 1 170 4.34e-31 120
Msa0691040 MtrunA17_Chr1g0152011 50.847 118 25 2 44 128 1 118 4.36e-31 120
Msa0691040 MtrunA17_Chr2g0330041 44.800 125 37 1 44 136 1 125 7.73e-31 120
Msa0691040 MtrunA17_Chr5g0417821 46.218 119 32 1 54 140 6 124 1.32e-30 117
Msa0691040 MtrunA17_Chr7g0264641 47.500 120 30 2 44 130 1 120 1.71e-30 117
Msa0691040 MtrunA17_Chr5g0400821 50.000 118 26 2 44 128 1 118 2.58e-30 117
Msa0691040 MtrunA17_Chr8g0342521 44.715 123 36 1 44 134 1 123 3.60e-30 118
Msa0691040 MtrunA17_Chr2g0311221 50.000 110 23 1 45 122 4 113 7.26e-30 117
Msa0691040 MtrunA17_Chr8g0342541 43.902 123 37 1 44 134 1 123 2.74e-29 115
Msa0691040 MtrunA17_Chr6g0453211 47.748 111 26 1 44 122 1 111 8.83e-29 113
Msa0691040 MtrunA17_Chr2g0327351 49.550 111 23 2 44 121 1 111 1.17e-28 113
Msa0691040 MtrunA17_Chr4g0022931 39.189 148 42 4 44 158 1 133 2.67e-28 111
Msa0691040 MtrunA17_Chr2g0323351 44.068 118 34 1 44 129 1 118 2.98e-28 110
Msa0691040 MtrunA17_Chr6g0487491 38.462 182 64 4 44 177 1 182 4.21e-28 110
Msa0691040 MtrunA17_Chr4g0022881 46.491 114 29 1 44 125 1 114 5.81e-28 109
Msa0691040 MtrunA17_Chr4g0022911 44.915 118 32 2 44 128 1 118 1.37e-27 109
Msa0691040 MtrunA17_Chr4g0022901 44.915 118 32 2 44 128 1 118 4.15e-27 108
Msa0691040 MtrunA17_Chr4g0042611 70.690 58 17 0 44 101 1 58 5.21e-27 102
Msa0691040 MtrunA17_Chr4g0054391 48.182 110 24 2 44 120 1 110 9.32e-27 107
Msa0691040 MtrunA17_Chr4g0044421 44.800 125 36 2 46 137 2 126 9.46e-27 105
Msa0691040 MtrunA17_Chr8g0387421 43.103 116 34 1 44 127 1 116 2.31e-26 107
Msa0691040 MtrunA17_Chr4g0072751 47.748 111 25 2 44 121 1 111 2.47e-26 107
Msa0691040 MtrunA17_Chr4g0022891 46.903 113 28 1 44 124 1 113 2.92e-26 105
Msa0691040 MtrunA17_Chr1g0209661 35.057 174 66 4 51 178 23 195 1.38e-25 104
Msa0691040 MtrunA17_Chr5g0397231 38.182 165 66 4 44 174 1 163 5.61e-25 103
Msa0691040 MtrunA17_Chr2g0294811 73.684 57 15 0 44 100 1 57 7.63e-25 97.8
Msa0691040 MtrunA17_Chr8g0342481 42.373 118 35 2 44 128 1 118 1.01e-24 103
Msa0691040 MtrunA17_Chr6g0450101 43.802 121 34 2 44 130 1 121 1.61e-24 99.4
Msa0691040 MtrunA17_Chr1g0194291 38.608 158 60 3 42 165 8 162 8.43e-24 99.0
Msa0691040 MtrunA17_Chr1g0186061 44.444 108 28 1 51 126 16 123 8.74e-24 98.6
Msa0691040 MtrunA17_Chr3g0080861 46.154 104 24 1 55 126 37 140 1.45e-23 101
Msa0691040 MtrunA17_Chr4g0055981 37.333 150 61 2 20 136 19 168 1.68e-23 97.4
Msa0691040 MtrunA17_Chr8g0354661 47.115 104 23 1 55 126 37 140 2.48e-23 101
Msa0691040 MtrunA17_Chr1g0168661 42.727 110 31 1 49 126 15 124 3.12e-23 97.1
Msa0691040 MtrunA17_Chr7g0228231 45.794 107 26 1 55 129 14 120 3.52e-23 95.9
Msa0691040 MtrunA17_Chr2g0322521 43.925 107 28 1 52 126 26 132 6.42e-23 99.0
Msa0691040 MtrunA17_Chr5g0395221 67.241 58 19 0 44 101 1 58 7.65e-23 91.3
Msa0691040 MtrunA17_Chr3g0099131 44.037 109 29 1 53 129 39 147 9.90e-23 99.4
Msa0691040 MtrunA17_Chr1g0203441 46.154 104 24 1 56 127 14 117 2.23e-22 95.1
Msa0691040 MtrunA17_Chr6g0470971 43.750 112 31 1 47 126 6 117 2.81e-22 95.1
Msa0691040 MtrunA17_Chr4g0032401 40.625 128 37 2 55 143 17 144 3.46e-22 95.9
Msa0691040 MtrunA17_Chr8g0349261 27.885 312 159 12 44 345 1 256 4.72e-22 94.7
Msa0691040 MtrunA17_Chr1g0154031 46.154 104 24 1 55 126 76 179 8.01e-22 95.9
Msa0691040 MtrunA17_Chr5g0434911 40.541 111 34 1 50 128 16 126 8.94e-22 93.6
Msa0691040 MtrunA17_Chr1g0194301 41.441 111 33 1 55 133 33 143 1.05e-21 93.6
Msa0691040 MtrunA17_Chr2g0293911 41.739 115 35 1 51 133 20 134 1.22e-21 94.4
Msa0691040 MtrunA17_Chr2g0328771 43.810 105 27 1 55 127 20 124 1.81e-21 93.6
Msa0691040 MtrunA17_Chr5g0434931 41.441 111 33 1 54 132 34 144 2.40e-21 92.4
Msa0691040 MtrunA17_Chr7g0220341 35.838 173 56 4 54 171 24 196 7.60e-21 90.9
Msa0691040 MtrunA17_Chr5g0434831 42.991 107 29 1 54 128 6 112 8.99e-21 89.0
Msa0691040 MtrunA17_Chr4g0068921 40.870 115 36 1 51 133 20 134 9.72e-21 89.0
Msa0691040 MtrunA17_Chr5g0434841 39.062 128 41 2 33 128 3 125 1.48e-20 90.9
Msa0691040 MtrunA17_Chr5g0440781 40.496 121 38 2 56 143 13 132 1.74e-20 87.8
Msa0691040 MtrunA17_Chr7g0247141 72.340 47 12 1 44 89 1 47 2.09e-20 84.0
Msa0691040 MtrunA17_Chr3g0088461 42.017 119 37 1 41 127 8 126 2.32e-20 90.9
Msa0691040 MtrunA17_Chr5g0440761 40.496 121 38 2 56 143 13 132 3.82e-20 89.0
Msa0691040 MtrunA17_Chr5g0441141 40.496 121 38 2 56 143 13 132 4.89e-20 88.6
Msa0691040 MtrunA17_Chr8g0342511 57.895 57 24 0 44 100 1 57 8.33e-20 83.2
Msa0691040 MtrunA17_Chr7g0228991 42.056 107 30 1 54 128 28 134 1.60e-19 87.4
Msa0691040 MtrunA17_Chr7g0240821 44.000 100 24 1 60 127 6 105 2.15e-19 85.9
Msa0691040 MtrunA17_Chr8g0342531 56.140 57 25 0 44 100 1 57 6.15e-19 83.2
Msa0691040 MtrunA17_Chr7g0247131 48.837 86 12 1 86 139 9 94 1.80e-18 84.3
Msa0691040 MtrunA17_Chr2g0323321 57.895 57 23 1 44 100 1 56 5.22e-18 79.0
Msa0691040 MtrunA17_Chr2g0327821 41.346 104 29 1 55 126 6 109 5.33e-18 82.0
Msa0691040 MtrunA17_Chr3g0099141 64.706 51 18 0 51 101 36 86 5.55e-18 79.7
Msa0691040 MtrunA17_Chr4g0042621 70.213 47 14 0 97 143 12 58 2.32e-17 82.0
Msa0691040 MtrunA17_Chr8g0334881 35.185 108 37 1 51 125 6 113 9.73e-17 80.1
Msa0691040 MtrunA17_Chr8g0360111 39.216 102 30 1 54 123 24 125 5.32e-16 77.0
Msa0691040 MtrunA17_Chr3g0093811 37.255 153 56 5 86 204 13 159 7.19e-16 76.6
Msa0691040 MtrunA17_Chr8g0342461 50.000 58 28 1 44 100 1 58 8.40e-15 70.9
Msa0691040 MtrunA17_Chr3g0145551 75.676 37 9 0 103 139 2 38 1.52e-14 68.6
Msa0691040 MtrunA17_Chr4g0030881 37.168 113 32 2 56 129 8 120 1.70e-14 72.8
Msa0691040 MtrunA17_Chr8g0342471 50.000 58 28 1 44 100 1 58 2.75e-14 69.3
Msa0691040 MtrunA17_Chr3g0133601 37.255 102 31 3 57 126 37 137 1.36e-12 66.6
Msa0691040 MtrunA17_Chr5g0425591 57.778 45 19 0 56 100 10 54 3.43e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691040 AT5G16770.4 41.096 365 123 11 44 356 1 325 3.30e-71 225
Msa0691040 AT5G16770.3 41.096 365 123 11 44 356 1 325 3.30e-71 225
Msa0691040 AT5G16770.1 41.096 365 123 11 44 356 1 325 9.81e-71 224
Msa0691040 AT5G16770.2 41.096 365 123 11 44 356 1 325 9.81e-71 224
Msa0691040 AT3G02940.2 41.176 357 119 9 44 356 1 310 5.75e-69 219
Msa0691040 AT3G02940.1 41.176 357 119 9 44 356 1 310 1.04e-68 219
Msa0691040 AT3G02940.3 41.176 357 119 9 44 356 1 310 1.04e-68 219
Msa0691040 AT5G10280.1 51.020 196 50 6 44 199 1 190 2.61e-57 189
Msa0691040 AT4G17785.1 34.595 370 164 9 44 356 1 349 9.39e-56 186
Msa0691040 AT1G34670.1 53.403 191 45 5 44 198 1 183 4.30e-55 185
Msa0691040 AT4G17785.2 34.324 370 165 9 44 356 1 349 4.46e-55 184
Msa0691040 AT5G65230.1 50.270 185 51 4 44 191 1 181 3.40e-50 170
Msa0691040 AT4G21440.1 41.778 225 84 5 44 233 1 213 5.23e-49 168
Msa0691040 AT3G61250.1 61.719 128 17 1 44 139 1 128 8.67e-49 166
Msa0691040 AT5G15310.1 48.521 169 47 3 44 180 1 161 2.17e-47 163
Msa0691040 AT5G15310.2 48.521 169 47 3 44 180 1 161 2.82e-47 163
Msa0691040 AT5G15310.4 57.364 129 23 1 44 140 1 129 3.55e-47 160
Msa0691040 AT3G01140.1 45.455 176 64 1 5 148 5 180 1.08e-46 163
Msa0691040 AT3G01140.2 54.745 137 30 1 44 148 1 137 1.68e-46 162
Msa0691040 AT4G05100.1 55.385 130 25 2 44 140 1 130 1.13e-44 156
Msa0691040 AT4G28110.1 53.488 129 28 1 44 140 1 129 2.12e-43 152
Msa0691040 AT4G22680.1 56.250 128 24 1 44 139 1 128 5.10e-42 147
Msa0691040 AT1G66230.1 55.469 128 25 1 44 139 1 128 7.08e-42 148
Msa0691040 AT5G16600.1 56.250 128 24 1 44 139 1 128 8.14e-42 149
Msa0691040 AT5G54230.1 49.689 161 49 1 44 172 1 161 3.74e-41 147
Msa0691040 AT1G22640.1 51.181 127 30 1 44 138 1 127 8.26e-40 142
Msa0691040 AT4G12350.1 54.688 128 26 1 44 139 1 128 1.07e-39 142
Msa0691040 AT5G61420.2 50.781 128 31 1 44 139 1 128 2.13e-39 143
Msa0691040 AT3G13540.1 53.600 125 26 1 47 139 15 139 6.47e-39 139
Msa0691040 AT4G38620.1 39.683 189 69 4 44 199 1 177 7.16e-39 140
Msa0691040 AT5G07690.1 50.781 128 31 1 44 139 1 128 9.07e-39 141
Msa0691040 AT4G09460.1 51.969 127 29 1 44 138 1 127 1.42e-38 138
Msa0691040 AT2G16720.1 51.181 127 30 1 44 138 1 127 2.28e-38 138
Msa0691040 AT4G34990.1 50.781 128 31 1 44 139 1 128 5.28e-38 137
Msa0691040 AT1G35515.1 50.794 126 30 1 44 137 1 126 7.31e-38 135
Msa0691040 AT3G23250.1 56.897 116 18 1 44 127 1 116 1.48e-37 136
Msa0691040 AT1G06180.1 56.897 116 18 1 44 127 1 116 2.22e-37 135
Msa0691040 AT5G26660.1 50.769 130 32 1 44 141 1 130 2.22e-37 138
Msa0691040 AT1G18570.1 51.562 128 29 2 44 138 1 128 2.27e-37 137
Msa0691040 AT5G60890.1 49.219 128 33 1 44 139 1 128 2.34e-37 136
Msa0691040 AT2G31180.1 55.172 116 20 1 44 127 1 116 3.05e-37 134
Msa0691040 AT1G57560.1 49.219 128 33 1 44 139 1 128 7.58e-37 135
Msa0691040 AT1G57560.2 49.219 128 33 1 44 139 1 128 1.45e-36 134
Msa0691040 AT5G14340.1 49.265 136 37 1 36 139 5 140 3.03e-36 133
Msa0691040 AT5G07700.1 48.438 128 34 1 44 139 1 128 3.70e-36 134
Msa0691040 AT5G07700.2 48.438 128 34 1 44 139 1 128 3.70e-36 134
Msa0691040 AT5G62320.1 48.889 135 30 2 43 138 1 135 2.00e-35 130
Msa0691040 AT1G09540.1 50.000 128 32 1 44 139 1 128 2.39e-35 132
Msa0691040 AT5G56110.1 49.219 128 33 1 44 139 1 128 7.53e-35 130
Msa0691040 AT1G74080.1 47.328 131 37 1 44 142 1 131 1.32e-34 130
Msa0691040 AT3G47600.1 51.261 119 26 1 44 130 1 119 1.80e-34 129
Msa0691040 AT1G56160.1 53.043 115 22 1 45 127 4 118 5.81e-34 127
Msa0691040 AT2G47460.1 53.448 116 22 1 44 127 1 116 6.66e-34 129
Msa0691040 AT1G08810.1 43.030 165 54 4 44 176 1 157 1.22e-33 126
Msa0691040 AT5G62470.2 49.580 119 28 1 44 130 1 119 2.10e-33 127
Msa0691040 AT4G01680.3 48.819 127 33 1 44 138 1 127 4.39e-33 123
Msa0691040 AT5G49330.1 51.724 116 24 1 44 127 1 116 1.01e-32 125
Msa0691040 AT4G01680.1 48.819 127 33 1 44 138 1 127 1.28e-32 124
Msa0691040 AT3G62610.1 51.724 116 24 1 44 127 1 116 2.18e-32 124
Msa0691040 AT1G79180.1 50.427 117 26 1 45 129 4 120 2.39e-32 123
Msa0691040 AT3G28910.1 50.000 122 29 1 44 133 1 122 2.50e-32 124
Msa0691040 AT3G12720.1 48.760 121 30 1 49 137 16 136 3.15e-32 123
Msa0691040 AT1G74650.1 49.580 119 28 1 44 130 1 119 3.52e-32 123
Msa0691040 AT5G62470.1 49.580 119 27 2 44 130 1 118 1.05e-31 122
Msa0691040 AT3G28470.1 40.331 181 64 3 44 190 1 171 2.06e-31 121
Msa0691040 AT2G36890.1 48.031 127 33 2 44 137 1 127 7.14e-31 119
Msa0691040 AT2G36890.2 48.031 127 33 2 44 137 42 168 7.89e-31 120
Msa0691040 AT1G74430.1 46.875 128 36 1 44 139 1 128 1.03e-30 118
Msa0691040 AT5G23000.1 49.153 118 27 2 44 128 1 118 1.20e-30 119
Msa0691040 AT4G37780.1 49.153 118 27 2 44 128 1 118 1.46e-30 118
Msa0691040 AT5G57620.1 50.847 118 25 2 44 128 1 118 1.72e-30 119
Msa0691040 AT1G16490.1 49.565 115 26 1 45 127 4 118 1.95e-30 117
Msa0691040 AT3G12820.1 50.000 116 26 1 46 129 5 120 1.02e-29 114
Msa0691040 AT5G65790.1 50.000 118 26 2 44 128 1 118 1.31e-29 117
Msa0691040 AT4G01680.2 44.604 139 33 2 44 138 1 139 2.47e-29 116
Msa0691040 AT3G49690.1 49.153 118 27 2 44 128 1 118 2.70e-29 115
Msa0691040 AT1G18710.1 43.796 137 45 1 44 148 1 137 5.17e-29 113
Msa0691040 AT3G13890.2 45.299 117 32 1 44 128 1 117 9.43e-29 114
Msa0691040 AT1G63910.1 39.259 135 50 1 44 146 1 135 2.46e-27 111
Msa0691040 AT1G79180.2 38.667 150 27 2 45 129 4 153 2.08e-26 107
Msa0691040 AT3G13890.1 42.063 126 32 2 44 128 1 126 6.23e-26 107
Msa0691040 AT5G40350.1 44.643 112 30 1 52 131 14 125 1.07e-24 100
Msa0691040 AT3G27810.1 46.364 110 27 1 52 129 17 126 1.83e-24 100
Msa0691040 AT3G24310.1 45.794 107 26 1 52 126 15 121 8.30e-24 99.4
Msa0691040 AT3G11440.3 32.381 210 101 4 52 229 38 238 3.73e-23 100
Msa0691040 AT3G11440.4 32.381 210 101 4 52 229 38 238 3.73e-23 100
Msa0691040 AT3G11440.1 32.381 210 101 4 52 229 38 238 3.73e-23 100
Msa0691040 AT3G11440.2 32.381 210 101 4 52 229 38 238 3.98e-23 100
Msa0691040 AT5G14750.1 45.192 104 25 1 56 127 17 120 6.13e-23 95.5
Msa0691040 AT1G48000.1 37.500 144 56 2 55 164 32 175 7.62e-23 96.3
Msa0691040 AT4G13480.1 45.794 107 26 1 52 126 3 109 8.85e-23 96.3
Msa0691040 AT5G40330.1 43.519 108 29 1 52 127 9 116 9.05e-23 95.5
Msa0691040 AT2G32460.2 43.103 116 27 2 43 126 1 109 1.84e-22 98.6
Msa0691040 AT2G32460.1 44.762 105 26 1 54 126 17 121 2.46e-22 98.2
Msa0691040 AT3G30210.1 45.192 104 25 1 54 125 26 129 3.76e-22 95.1
Msa0691040 AT5G06100.1 42.593 108 30 1 51 126 28 135 4.80e-22 97.1
Msa0691040 AT3G01530.1 43.119 109 30 1 51 127 21 129 5.00e-22 93.2
Msa0691040 AT1G56650.1 31.937 191 77 4 53 190 6 196 7.86e-22 93.6
Msa0691040 AT5G06100.5 42.593 108 30 1 51 126 28 135 8.27e-22 97.1
Msa0691040 AT5G06100.2 42.593 108 30 1 51 126 28 135 8.27e-22 97.1
Msa0691040 AT5G06100.3 42.593 108 30 1 51 126 28 135 8.27e-22 97.1
Msa0691040 AT5G06100.4 42.593 108 30 1 51 126 28 135 8.27e-22 97.1
Msa0691040 AT5G35550.1 45.714 105 25 1 55 127 14 118 1.18e-21 93.2
Msa0691040 AT3G06490.1 42.609 115 34 1 51 133 15 129 1.43e-21 94.4
Msa0691040 AT5G55020.1 44.545 110 28 2 55 132 26 134 1.58e-21 96.3
Msa0691040 AT1G66380.1 40.458 131 32 3 54 148 7 127 1.95e-21 89.4
Msa0691040 AT5G52600.1 42.478 113 30 2 49 126 3 115 4.92e-21 90.1
Msa0691040 AT3G27920.1 42.857 105 28 1 56 128 15 119 5.89e-21 90.5
Msa0691040 AT1G25340.1 39.130 115 38 1 56 138 19 133 7.36e-21 91.7
Msa0691040 AT1G66370.1 43.478 115 29 2 44 126 1 111 8.30e-21 90.5
Msa0691040 AT1G66390.1 45.714 105 25 1 54 126 7 111 1.46e-20 90.1
Msa0691040 AT5G49620.1 40.000 115 37 1 51 133 22 136 2.22e-20 90.5
Msa0691040 AT5G12870.1 43.519 108 29 1 55 130 18 125 3.49e-20 89.7
Msa0691040 AT1G68320.1 40.541 111 34 1 55 133 19 129 3.54e-20 89.7
Msa0691040 AT2G47190.1 39.130 115 38 1 51 133 16 130 6.16e-20 89.0
Msa0691040 AT2G26960.1 39.370 127 44 2 55 149 20 145 1.17e-19 90.1
Msa0691040 AT5G52260.1 42.453 106 29 1 56 129 13 118 2.07e-19 87.0
Msa0691040 AT3G46130.1 41.880 117 35 2 52 136 6 121 2.16e-19 87.0
Msa0691040 AT1G18960.1 41.667 120 33 3 53 139 6 121 3.08e-19 87.4
Msa0691040 AT3G48920.1 43.137 102 26 1 56 125 19 120 3.72e-19 86.3
Msa0691040 AT4G26930.1 38.843 121 39 2 40 125 1 121 4.15e-19 88.2
Msa0691040 AT5G59780.3 42.718 103 27 1 56 126 9 111 1.56e-18 84.0
Msa0691040 AT5G49620.2 35.659 129 37 1 51 133 22 150 1.80e-18 85.5
Msa0691040 AT5G15310.3 78.571 42 9 0 99 140 9 50 2.87e-18 83.6
Msa0691040 AT4G28110.2 72.093 43 12 0 98 140 3 45 1.30e-17 80.5
Msa0691040 AT3G60460.1 36.538 104 33 1 55 125 11 114 9.61e-17 80.1
Msa0691040 AT5G61420.1 73.171 41 11 0 99 139 9 49 1.53e-16 79.3
Msa0691040 AT5G26660.2 47.674 86 13 1 88 141 14 99 2.91e-16 79.0
Msa0691040 AT1G22640.2 72.093 43 12 0 96 138 13 55 4.04e-16 76.3
Msa0691040 AT1G22640.3 46.429 84 24 2 55 138 8 70 1.67e-15 74.7
Msa0691040 AT5G14340.2 65.909 44 15 0 99 142 10 53 9.38e-14 69.3
Msa0691040 AT1G66380.2 61.702 47 18 0 54 100 7 53 1.16e-13 67.0
Msa0691040 AT1G71030.2 65.000 40 14 0 99 138 42 81 1.47e-12 65.9
Msa0691040 AT1G71030.1 65.000 40 14 0 99 138 56 95 1.86e-12 65.9
Msa0691040 AT1G74430.2 60.976 41 16 0 99 139 19 59 1.29e-11 63.5

Find 75 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAAATTCGCTTCCGAATT+TGG 0.086404 4_4:+58982907 Msa0691040:CDS
AAGCAATGGATATCAGTTTA+TGG 0.227747 4_4:+58982790 Msa0691040:CDS
AAGGATTGGAACACTCATTT+TGG 0.251218 4_4:-58982985 None:intergenic
CAAAGCTAGCAGGATTAAAT+AGG 0.299125 4_4:+58981805 Msa0691040:CDS
ACCAATATTCTGTCCTCTTC+TGG 0.310346 4_4:-58981738 None:intergenic
TCTTTCACACCAGAACATTC+TGG 0.335500 4_4:-58982941 None:intergenic
GGATATCAGTTTATGGATAA+TGG 0.351842 4_4:+58982797 Msa0691040:CDS
AGATTGAGATGATCAATTCT+TGG 0.352637 4_4:-58982437 None:intergenic
GTATCCTTCATTTACCATTT+GGG 0.362780 4_4:-58979645 None:intergenic
TCGGTTTCACCAGAATGTTC+TGG 0.365345 4_4:+58982932 Msa0691040:CDS
TTCGCTTCCGAATTTGGTTT+CGG 0.370573 4_4:+58982913 Msa0691040:CDS
CTATTTAATCCTGCTAGCTT+TGG 0.375946 4_4:-58981804 None:intergenic
AGGATGTGAGCGATGCTTAT+TGG 0.376641 4_4:+58983053 Msa0691040:CDS
TTCAACTACCTTTGAAATGT+TGG 0.385318 4_4:+58983015 Msa0691040:CDS
CTGCTACTACTAATGCTCTT+AGG 0.388575 4_4:+58982525 Msa0691040:CDS
TTGCAGTTACTCAATCCATT+TGG 0.403717 4_4:+58982638 Msa0691040:CDS
GATCAAGCTTCACCACTTGA+AGG 0.412138 4_4:-58979605 None:intergenic
TATACCATCTTCTATGTGGC+AGG 0.413747 4_4:+58980109 Msa0691040:CDS
TCAACTACCTTTGAAATGTT+GGG 0.413953 4_4:+58983016 Msa0691040:CDS
AGTGCTACTGCTGGTGATGA+TGG 0.425343 4_4:+58981665 Msa0691040:intron
GAGCATGAATATTGGTACTA+AGG 0.425624 4_4:-58982604 None:intergenic
TGAGGTAGGAGCATGAATAT+TGG 0.426682 4_4:-58982612 None:intergenic
GTAGCAGTGTCCAAAGTGTT+TGG 0.430286 4_4:-58982509 None:intergenic
AGTTGAAGTTGAAGAAGGAT+TGG 0.431292 4_4:-58982999 None:intergenic
AAGGTAGTTGAAGTTGAAGA+AGG 0.434281 4_4:-58983004 None:intergenic
TTGCTTGAAGTCTGATCAAA+AGG 0.441589 4_4:+58982841 Msa0691040:CDS
AAATTCGGAAGCGAATTTAT+CGG 0.444791 4_4:-58982905 None:intergenic
ACCAGAAGAGGACAGAATAT+TGG 0.448233 4_4:+58981737 Msa0691040:CDS
GGTGAAACCGAAACCAAATT+CGG 0.449651 4_4:-58982920 None:intergenic
CTGTCCTCTTCTGGTGTCCA+AGG 0.457198 4_4:-58981729 None:intergenic
GAAGATGAAGATTGTCCAAA+TGG 0.462779 4_4:-58982653 None:intergenic
ACCCTTGTCTTATGCCCAAA+TGG 0.463764 4_4:+58979631 Msa0691040:CDS
AGAAACATGGCCATGGAAGT+TGG 0.466146 4_4:+58981772 Msa0691040:CDS
GTGCTACTGCTGGTGATGAT+GGG 0.473654 4_4:+58981666 Msa0691040:intron
ATTGAGTAACTGCAAGTTTG+AGG 0.475558 4_4:-58982630 None:intergenic
ATAAGGCGCCAATGTTCTGC+TGG 0.484957 4_4:+58979559 None:intergenic
ATTCCAATTGCTTCAAAACA+TGG 0.485063 4_4:+58982568 Msa0691040:CDS
TTCTGGTGTGAAAGAGATGA+TGG 0.496083 4_4:+58982949 Msa0691040:CDS
TGCTACAAATTCTTCTTCGA+CGG 0.497348 4_4:+58982880 Msa0691040:CDS
GAAAGAGATGATGGGAAACA+AGG 0.499669 4_4:+58982958 Msa0691040:CDS
GCTATAGCAGGTCATCTACC+AGG 0.503068 4_4:+58982326 Msa0691040:CDS
TGTCTGTGCAGTGCTACTGC+TGG 0.505150 4_4:+58981656 Msa0691040:intron
GTTGGGAGATTTCATGTATG+AGG 0.511151 4_4:+58983033 Msa0691040:CDS
ATTCTTGGACGATGAGTCAC+TGG 0.516959 4_4:-58982422 None:intergenic
TACCATTTGGGCATAAGACA+AGG 0.517846 4_4:-58979633 None:intergenic
AGCATGAATATTGGTACTAA+GGG 0.518632 4_4:-58982603 None:intergenic
TTCTTATACCATCTTCTATG+TGG 0.527262 4_4:+58980105 Msa0691040:CDS
AGAGCACTTCCAAAGCTAGC+AGG 0.529780 4_4:+58981795 Msa0691040:CDS
CTTAAAACTTGCTGCATCTG+AGG 0.533236 4_4:-58982770 None:intergenic
GTGGGAAGAGTTGCAGACTA+AGG 0.536175 4_4:+58981829 Msa0691040:CDS
GAAGTGCTCTCCAACTTCCA+TGG 0.538398 4_4:-58981782 None:intergenic
TGATGAAAGTGGTTTGAAGA+AGG 0.545334 4_4:+58981704 Msa0691040:CDS
GTGGTTTGAAGAAGGGACCT+TGG 0.548378 4_4:+58981712 Msa0691040:CDS
ATTTCATTATCAGTCCTCCC+TGG 0.550871 4_4:-58982344 None:intergenic
GAAACCTGCCACATAGAAGA+TGG 0.556966 4_4:-58980113 None:intergenic
AGTAACTGCAAGTTTGAGGT+AGG 0.567940 4_4:-58982626 None:intergenic
AAAGAGATGATGGGAAACAA+GGG 0.568405 4_4:+58982959 Msa0691040:CDS
ATTAGGTGGTCAGCTATAGC+AGG 0.569745 4_4:+58982314 Msa0691040:intron
TCATCGATCCAGCAGAACAT+TGG 0.576335 4_4:-58979567 None:intergenic
GAAATCTCCCAACATTTCAA+AGG 0.583349 4_4:-58983023 None:intergenic
TAGCAGGATTAAATAGGTGT+GGG 0.585086 4_4:+58981811 Msa0691040:CDS
TGCTACTGCTGGTGATGATG+GGG 0.597687 4_4:+58981667 Msa0691040:CDS
CACATTAAGAAACATGGCCA+TGG 0.603080 4_4:+58981765 Msa0691040:CDS
CTAGCAGGATTAAATAGGTG+TGG 0.605242 4_4:+58981810 Msa0691040:CDS
ACCATTTGGGCATAAGACAA+GGG 0.605823 4_4:-58979632 None:intergenic
GCACCATGCTGTGATGAAAG+TGG 0.624729 4_4:+58981693 Msa0691040:CDS
GTGAATCACATTAAGAAACA+TGG 0.634022 4_4:+58981759 Msa0691040:CDS
GATGAAAGTGGTTTGAAGAA+GGG 0.641863 4_4:+58981705 Msa0691040:CDS
TCTGGTGTGAAAGAGATGAT+GGG 0.644119 4_4:+58982950 Msa0691040:CDS
TATCAGTTTATGGATAATGG+TGG 0.645117 4_4:+58982800 Msa0691040:CDS
AAACCACTTTCATCACAGCA+TGG 0.662952 4_4:-58981696 None:intergenic
GGGACCTTGGACACCAGAAG+AGG 0.678796 4_4:+58981725 Msa0691040:CDS
CTATAGCAGGTCATCTACCA+GGG 0.679150 4_4:+58982327 Msa0691040:CDS
AAGAGATGATGGGAAACAAG+GGG 0.694211 4_4:+58982960 Msa0691040:CDS
TAGCAGGTCATCTACCAGGG+AGG 0.742155 4_4:+58982330 Msa0691040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATATATGATAGATA+CGG - chr4_4:58980721-58980740 None:intergenic 10.0%
!! TTTACATAGTTAATATATAT+AGG + chr4_4:58981244-58981263 Msa0691040:intron 10.0%
!! TTAATATATATAGGAAAATA+TGG + chr4_4:58981253-58981272 Msa0691040:intron 10.0%
!! TAATATATATAGGAAAATAT+GGG + chr4_4:58981254-58981273 Msa0691040:intron 10.0%
!!! ATAATGAAATAAAGAATTTT+TGG + chr4_4:58982357-58982376 Msa0691040:CDS 10.0%
!! TAACTGAGTTTAATTAATAT+AGG + chr4_4:58980352-58980371 Msa0691040:intron 15.0%
!!! TTTTTATTGAAAATGTTTGA+TGG - chr4_4:58980782-58980801 None:intergenic 15.0%
!!! ATCATAATTTTCCATTAAAA+GGG - chr4_4:58981204-58981223 None:intergenic 15.0%
!!! AATCATAATTTTCCATTAAA+AGG - chr4_4:58981205-58981224 None:intergenic 15.0%
!! TTTGTATTATTATTATTAGG+TGG + chr4_4:58982300-58982319 Msa0691040:intron 15.0%
!!! AATTTTCTAAATGAACTTTT+AGG + chr4_4:58982689-58982708 Msa0691040:CDS 15.0%
!!! TATATCTTTAAAATTAGGCT+TGG - chr4_4:58980188-58980207 None:intergenic 20.0%
!! TCAGTTAAAAATGATTTATG+TGG - chr4_4:58980339-58980358 None:intergenic 20.0%
!!! AGGAATAAAAATTTTGTGTT+AGG - chr4_4:58980554-58980573 None:intergenic 20.0%
!! GAAAGTAAAAAATTTGTGTT+AGG - chr4_4:58980574-58980593 None:intergenic 20.0%
!!! AAATTTTGCATATTCTTAGT+TGG + chr4_4:58981119-58981138 Msa0691040:intron 20.0%
!!! GCTTTGTTATATATATAGTA+CGG - chr4_4:58981470-58981489 None:intergenic 20.0%
!! TTGAAATGAAGAATGTATTA+CGG - chr4_4:58981548-58981567 None:intergenic 20.0%
!!! GATTAAAAGAGTTTAGTTTA+AGG - chr4_4:58981623-58981642 None:intergenic 20.0%
!! TTAGTTAAGTTCAAATTGAT+CGG + chr4_4:58982092-58982111 Msa0691040:intron 20.0%
!! AGGTTAAAAAAGTGTGTATA+TGG + chr4_4:58979859-58979878 Msa0691040:intron 25.0%
!!! TTTTAAGGTTTAGGGTTTTA+GGG - chr4_4:58979947-58979966 None:intergenic 25.0%
! TTATGTTGTATATACCTCTA+AGG + chr4_4:58980753-58980772 Msa0691040:intron 25.0%
! CATCAGTGTAAAATATGAAA+AGG + chr4_4:58981026-58981045 Msa0691040:intron 25.0%
! TCCAATGAACAGTTTATTAA+GGG - chr4_4:58981153-58981172 None:intergenic 25.0%
! TTCCAATGAACAGTTTATTA+AGG - chr4_4:58981154-58981173 None:intergenic 25.0%
!! ATAATTTTCCATTAAAAGGG+TGG - chr4_4:58981201-58981220 None:intergenic 25.0%
! ATTTACTGTCACTAACATAA+TGG + chr4_4:58981286-58981305 Msa0691040:intron 25.0%
!! AACAAAATCAGTGTTGAATT+AGG - chr4_4:58981969-58981988 None:intergenic 25.0%
!! CAACTTCTAACATGTATTTT+TGG - chr4_4:58982061-58982080 None:intergenic 25.0%
! AAAGAAAAAGCTTCTTCAAA+TGG + chr4_4:58982391-58982410 Msa0691040:CDS 25.0%
! AAGAAAAAGCTTCTTCAAAT+GGG + chr4_4:58982392-58982411 Msa0691040:CDS 25.0%
!! CAATTATTTTCCAAACACTT+TGG + chr4_4:58982499-58982518 Msa0691040:CDS 25.0%
GTATCCTTCATTTACCATTT+GGG - chr4_4:58979648-58979667 None:intergenic 30.0%
AGTATCCTTCATTTACCATT+TGG - chr4_4:58979649-58979668 None:intergenic 30.0%
! AAAAGTGTGTATATGGAAAG+AGG + chr4_4:58979866-58979885 Msa0691040:intron 30.0%
!!! GTTTTAAGGTTTAGGGTTTT+AGG - chr4_4:58979948-58979967 None:intergenic 30.0%
!!! AGGTAGTGTTTTAAGGTTTA+GGG - chr4_4:58979955-58979974 None:intergenic 30.0%
!!! AAGGTAGTGTTTTAAGGTTT+AGG - chr4_4:58979956-58979975 None:intergenic 30.0%
! TTGTCAAAGGTAGTGTTTTA+AGG - chr4_4:58979962-58979981 None:intergenic 30.0%
TTGTGATTTGATCTTATCAG+TGG + chr4_4:58980008-58980027 Msa0691040:intron 30.0%
TTCTTATACCATCTTCTATG+TGG + chr4_4:58980105-58980124 Msa0691040:CDS 30.0%
AAAAACAACACATGATCAAG+CGG + chr4_4:58980831-58980850 Msa0691040:intron 30.0%
! TGTTTTCAGAGTTTTCAGAA+AGG + chr4_4:58980889-58980908 Msa0691040:intron 30.0%
CTAACTTTAACTACCAACTA+GGG - chr4_4:58980972-58980991 None:intergenic 30.0%
ACTAACTTTAACTACCAACT+AGG - chr4_4:58980973-58980992 None:intergenic 30.0%
! CATATTTTACACTGATGAGA+TGG - chr4_4:58981023-58981042 None:intergenic 30.0%
CAGTGTAAAATATGAAAAGG+TGG + chr4_4:58981029-58981048 Msa0691040:intron 30.0%
TCCCTTAATAAACTGTTCAT+TGG + chr4_4:58981149-58981168 Msa0691040:intron 30.0%
ATATATAGTACGGTGATGTT+TGG - chr4_4:58981460-58981479 None:intergenic 30.0%
GACTTATAGTACAAGTATGT+TGG - chr4_4:58981519-58981538 None:intergenic 30.0%
GTGAATCACATTAAGAAACA+TGG + chr4_4:58981759-58981778 Msa0691040:CDS 30.0%
TTAAGACCTGATATCAAAAG+AGG + chr4_4:58981864-58981883 Msa0691040:intron 30.0%
! AATTGTCCTCTTTTGATATC+AGG - chr4_4:58981873-58981892 None:intergenic 30.0%
CGATGAGATTAACATAATCA+CGG - chr4_4:58982033-58982052 None:intergenic 30.0%
CAATAAAGTATATCGAACTC+GGG - chr4_4:58982126-58982145 None:intergenic 30.0%
CCAATAAAGTATATCGAACT+CGG - chr4_4:58982127-58982146 None:intergenic 30.0%
AGATTGAGATGATCAATTCT+TGG - chr4_4:58982440-58982459 None:intergenic 30.0%
!!! GTTTTGAAGCAATTGGAATT+TGG - chr4_4:58982567-58982586 None:intergenic 30.0%
ATTCCAATTGCTTCAAAACA+TGG + chr4_4:58982568-58982587 Msa0691040:CDS 30.0%
AGCATGAATATTGGTACTAA+GGG - chr4_4:58982606-58982625 None:intergenic 30.0%
!! CTGATTTTGAGAAGCATAAT+TGG - chr4_4:58982726-58982745 None:intergenic 30.0%
AAGCAATGGATATCAGTTTA+TGG + chr4_4:58982790-58982809 Msa0691040:CDS 30.0%
GGATATCAGTTTATGGATAA+TGG + chr4_4:58982797-58982816 Msa0691040:CDS 30.0%
! TATCAGTTTATGGATAATGG+TGG + chr4_4:58982800-58982819 Msa0691040:CDS 30.0%
AAATTCGGAAGCGAATTTAT+CGG - chr4_4:58982908-58982927 None:intergenic 30.0%
!! TTCAACTACCTTTGAAATGT+TGG + chr4_4:58983015-58983034 Msa0691040:CDS 30.0%
!! TCAACTACCTTTGAAATGTT+GGG + chr4_4:58983016-58983035 Msa0691040:CDS 30.0%
! TTTTTCTACAGACCTTCAAG+TGG + chr4_4:58979593-58979612 Msa0691040:CDS 35.0%
TATGCCCAAATGGTAAATGA+AGG + chr4_4:58979641-58979660 Msa0691040:intron 35.0%
TGGTAAATGAAGGATACTTC+AGG + chr4_4:58979651-58979670 Msa0691040:intron 35.0%
ACTCATGTTCACAATAGTGA+CGG + chr4_4:58979675-58979694 Msa0691040:intron 35.0%
!! TTTGAGTTAGCCTTCATAGT+GGG + chr4_4:58979890-58979909 Msa0691040:intron 35.0%
ACCTTTGACAATTGTCTTCT+TGG + chr4_4:58979971-58979990 Msa0691040:intron 35.0%
CCTTTGACAATTGTCTTCTT+GGG + chr4_4:58979972-58979991 Msa0691040:intron 35.0%
CAAGGATCACTAATTGTACA+AGG - chr4_4:58980054-58980073 None:intergenic 35.0%
AAGAAGAACAAGGCACAATA+AGG - chr4_4:58981078-58981097 None:intergenic 35.0%
TCACTTGTACAAGAAGAACA+AGG - chr4_4:58981088-58981107 None:intergenic 35.0%
CTAACTTGGCTAAATAGCAT+AGG - chr4_4:58981494-58981513 None:intergenic 35.0%
CAAGTATGTTGGAACTAACT+TGG - chr4_4:58981508-58981527 None:intergenic 35.0%
TCTTCATTTCAAACACTCCT+AGG + chr4_4:58981556-58981575 Msa0691040:intron 35.0%
ATTTCAAACACTCCTAGGTA+TGG + chr4_4:58981561-58981580 Msa0691040:intron 35.0%
TGATGAAAGTGGTTTGAAGA+AGG + chr4_4:58981704-58981723 Msa0691040:CDS 35.0%
GATGAAAGTGGTTTGAAGAA+GGG + chr4_4:58981705-58981724 Msa0691040:CDS 35.0%
! CTATTTAATCCTGCTAGCTT+TGG - chr4_4:58981807-58981826 None:intergenic 35.0%
CAAAGCTAGCAGGATTAAAT+AGG + chr4_4:58981805-58981824 Msa0691040:CDS 35.0%
TAGCAGGATTAAATAGGTGT+GGG + chr4_4:58981811-58981830 Msa0691040:CDS 35.0%
ATCAATTTGCATGCTGTTCT+TGG + chr4_4:58981918-58981937 Msa0691040:intron 35.0%
TCAATTTGCATGCTGTTCTT+GGG + chr4_4:58981919-58981938 Msa0691040:intron 35.0%
CCGAGTTCGATATACTTTAT+TGG + chr4_4:58982124-58982143 Msa0691040:intron 35.0%
TAGCTATAGTATCCAGAGTT+CGG - chr4_4:58982183-58982202 None:intergenic 35.0%
AACTCTGGATACTATAGCTA+GGG + chr4_4:58982183-58982202 Msa0691040:intron 35.0%
!!! GAACCATGTTTTGAAGCAAT+TGG - chr4_4:58982574-58982593 None:intergenic 35.0%
GAGCATGAATATTGGTACTA+AGG - chr4_4:58982607-58982626 None:intergenic 35.0%
ATTGAGTAACTGCAAGTTTG+AGG - chr4_4:58982633-58982652 None:intergenic 35.0%
TTGCAGTTACTCAATCCATT+TGG + chr4_4:58982638-58982657 Msa0691040:CDS 35.0%
GAAGATGAAGATTGTCCAAA+TGG - chr4_4:58982656-58982675 None:intergenic 35.0%
!!! ATGCAGCAAGTTTTAAGCAA+TGG + chr4_4:58982776-58982795 Msa0691040:CDS 35.0%
TTGCTTGAAGTCTGATCAAA+AGG + chr4_4:58982841-58982860 Msa0691040:CDS 35.0%
TGCTACAAATTCTTCTTCGA+CGG + chr4_4:58982880-58982899 Msa0691040:CDS 35.0%
GATAAATTCGCTTCCGAATT+TGG + chr4_4:58982907-58982926 Msa0691040:CDS 35.0%
!! AAAGAGATGATGGGAAACAA+GGG + chr4_4:58982959-58982978 Msa0691040:CDS 35.0%
! AAGGATTGGAACACTCATTT+TGG - chr4_4:58982988-58983007 None:intergenic 35.0%
AGTTGAAGTTGAAGAAGGAT+TGG - chr4_4:58983002-58983021 None:intergenic 35.0%
AAGGTAGTTGAAGTTGAAGA+AGG - chr4_4:58983007-58983026 None:intergenic 35.0%
GAAATCTCCCAACATTTCAA+AGG - chr4_4:58983026-58983045 None:intergenic 35.0%
ACCATTTGGGCATAAGACAA+GGG - chr4_4:58979635-58979654 None:intergenic 40.0%
TACCATTTGGGCATAAGACA+AGG - chr4_4:58979636-58979655 None:intergenic 40.0%
GACTAGTAGTAGGATCTCTT+TGG + chr4_4:58979700-58979719 Msa0691040:intron 40.0%
TCTGACACTCAAGTCAACAA+GGG + chr4_4:58979817-58979836 Msa0691040:intron 40.0%
! GTTGTGGGTGATAGGTTTTT+AGG + chr4_4:58979839-58979858 Msa0691040:intron 40.0%
!! CTTTGAGTTAGCCTTCATAG+TGG + chr4_4:58979889-58979908 Msa0691040:intron 40.0%
CCCAAGAAGACAATTGTCAA+AGG - chr4_4:58979975-58979994 None:intergenic 40.0%
!! AAAGAGCGTCAGTTTGTACA+AGG - chr4_4:58980072-58980091 None:intergenic 40.0%
TGACGCTCTTTGTACAATCA+GGG + chr4_4:58980081-58980100 Msa0691040:intron 40.0%
TATACCATCTTCTATGTGGC+AGG + chr4_4:58980109-58980128 Msa0691040:CDS 40.0%
! ATGTTTGATGGACACCTTAG+AGG - chr4_4:58980770-58980789 None:intergenic 40.0%
CTTTAACTACCAACTAGGGT+AGG - chr4_4:58980968-58980987 None:intergenic 40.0%
TTACACTGATGAGATGGCAA+CGG - chr4_4:58981017-58981036 None:intergenic 40.0%
! TTCTACGTCCACCCTTTTAA+TGG + chr4_4:58981190-58981209 Msa0691040:intron 40.0%
GAGTAAATGACTCCATACCT+AGG - chr4_4:58981576-58981595 None:intergenic 40.0%
AAACCACTTTCATCACAGCA+TGG - chr4_4:58981699-58981718 None:intergenic 40.0%
ACCAGAAGAGGACAGAATAT+TGG + chr4_4:58981737-58981756 Msa0691040:CDS 40.0%
ACCAATATTCTGTCCTCTTC+TGG - chr4_4:58981741-58981760 None:intergenic 40.0%
CACATTAAGAAACATGGCCA+TGG + chr4_4:58981765-58981784 Msa0691040:CDS 40.0%
CTAGCAGGATTAAATAGGTG+TGG + chr4_4:58981810-58981829 Msa0691040:CDS 40.0%
TAAAGTATATCGAACTCGGG+TGG - chr4_4:58982123-58982142 None:intergenic 40.0%
TTTATCTTCTAGCCGAACTC+TGG + chr4_4:58982168-58982187 Msa0691040:intron 40.0%
GAACTCTGGATACTATAGCT+AGG + chr4_4:58982182-58982201 Msa0691040:intron 40.0%
! TCTCTTGTTTCCAGGGAAAA+AGG - chr4_4:58982210-58982229 None:intergenic 40.0%
! TTTTTCCCTGGAAACAAGAG+AGG + chr4_4:58982209-58982228 Msa0691040:intron 40.0%
! TTTTCCCTGGAAACAAGAGA+GGG + chr4_4:58982210-58982229 Msa0691040:intron 40.0%
! TTAACCCTCTCTTGTTTCCA+GGG - chr4_4:58982217-58982236 None:intergenic 40.0%
ATTTCATTATCAGTCCTCCC+TGG - chr4_4:58982347-58982366 None:intergenic 40.0%
CTGCTACTACTAATGCTCTT+AGG + chr4_4:58982525-58982544 Msa0691040:CDS 40.0%
! TGAGGTAGGAGCATGAATAT+TGG - chr4_4:58982615-58982634 None:intergenic 40.0%
! AGTAACTGCAAGTTTGAGGT+AGG - chr4_4:58982629-58982648 None:intergenic 40.0%
!! CTTAAAACTTGCTGCATCTG+AGG - chr4_4:58982773-58982792 None:intergenic 40.0%
! TTCGCTTCCGAATTTGGTTT+CGG + chr4_4:58982913-58982932 Msa0691040:CDS 40.0%
GGTGAAACCGAAACCAAATT+CGG - chr4_4:58982923-58982942 None:intergenic 40.0%
TCTTTCACACCAGAACATTC+TGG - chr4_4:58982944-58982963 None:intergenic 40.0%
TTCTGGTGTGAAAGAGATGA+TGG + chr4_4:58982949-58982968 Msa0691040:CDS 40.0%
TCTGGTGTGAAAGAGATGAT+GGG + chr4_4:58982950-58982969 Msa0691040:CDS 40.0%
!! GAAAGAGATGATGGGAAACA+AGG + chr4_4:58982958-58982977 Msa0691040:CDS 40.0%
!! AAGAGATGATGGGAAACAAG+GGG + chr4_4:58982960-58982979 Msa0691040:CDS 40.0%
GTTGGGAGATTTCATGTATG+AGG + chr4_4:58983033-58983052 Msa0691040:CDS 40.0%
GATCAAGCTTCACCACTTGA+AGG - chr4_4:58979608-58979627 None:intergenic 45.0%
ACCCTTGTCTTATGCCCAAA+TGG + chr4_4:58979631-58979650 Msa0691040:CDS 45.0%
CATGTTCACAATAGTGACGG+TGG + chr4_4:58979678-58979697 Msa0691040:intron 45.0%
TTTGGCCCTTTGGATAGTGA+TGG + chr4_4:58979718-58979737 Msa0691040:intron 45.0%
AGCGACCATCACTATCCAAA+GGG - chr4_4:58979726-58979745 None:intergenic 45.0%
GTTCGTCAAGCCATCAAATG+AGG - chr4_4:58979755-58979774 None:intergenic 45.0%
! TTGAGTGTCAGAGTGTTTGC+AGG - chr4_4:58979809-58979828 None:intergenic 45.0%
CTCTGACACTCAAGTCAACA+AGG + chr4_4:58979816-58979835 Msa0691040:intron 45.0%
ACTCAAGTCAACAAGGGTTG+TGG + chr4_4:58979823-58979842 Msa0691040:intron 45.0%
CTCAAGTCAACAAGGGTTGT+GGG + chr4_4:58979824-58979843 Msa0691040:intron 45.0%
TAGTCAACCACCCACTATGA+AGG - chr4_4:58979903-58979922 None:intergenic 45.0%
!! TTCATAGTGGGTGGTTGACT+AGG + chr4_4:58979902-58979921 Msa0691040:intron 45.0%
GGTGGTTGACTAGGTTACAA+GGG + chr4_4:58979911-58979930 Msa0691040:intron 45.0%
CTGACGCTCTTTGTACAATC+AGG + chr4_4:58980080-58980099 Msa0691040:intron 45.0%
GACGCTCTTTGTACAATCAG+GGG + chr4_4:58980082-58980101 Msa0691040:intron 45.0%
GAAACCTGCCACATAGAAGA+TGG - chr4_4:58980116-58980135 None:intergenic 45.0%
AGTGTGAAGCTCACTCTTCA+TGG - chr4_4:58980922-58980941 None:intergenic 45.0%
ACTGCCTAATAATTGCCACG+TGG + chr4_4:58980939-58980958 Msa0691040:intron 45.0%
GTGTCCACGTGGCAATTATT+AGG - chr4_4:58980946-58980965 None:intergenic 45.0%
GTAGCACTGCACAGACATAA+AGG - chr4_4:58981653-58981672 None:intergenic 45.0%
AGAAACATGGCCATGGAAGT+TGG + chr4_4:58981772-58981791 Msa0691040:CDS 45.0%
! CTTAACCCTCTCTTGTTTCC+AGG - chr4_4:58982218-58982237 None:intergenic 45.0%
ATTAGGTGGTCAGCTATAGC+AGG + chr4_4:58982314-58982333 Msa0691040:intron 45.0%
CTATAGCAGGTCATCTACCA+GGG + chr4_4:58982327-58982346 Msa0691040:CDS 45.0%
ATTCTTGGACGATGAGTCAC+TGG - chr4_4:58982425-58982444 None:intergenic 45.0%
! GTAGCAGTGTCCAAAGTGTT+TGG - chr4_4:58982512-58982531 None:intergenic 45.0%
TCGGTTTCACCAGAATGTTC+TGG + chr4_4:58982932-58982951 Msa0691040:CDS 45.0%
AGGATGTGAGCGATGCTTAT+TGG + chr4_4:58983053-58983072 Msa0691040:CDS 45.0%
!!! AAATATATATCTTTAAAATT+AGG - chr4_4:58980193-58980212 None:intergenic 5.0%
!!! AAAGTTATATTTTTTTTTAA+TGG - chr4_4:58980596-58980615 None:intergenic 5.0%
!! AATAAAAATTAATCTATTAT+CGG - chr4_4:58982150-58982169 None:intergenic 5.0%
!! TTATTTGTATTATTATTATT+AGG + chr4_4:58982297-58982316 Msa0691040:intron 5.0%
!! AGTGACGGTGGACTAGTAGT+AGG + chr4_4:58979690-58979709 Msa0691040:intron 50.0%
GTAGGATCTCTTTGGCCCTT+TGG + chr4_4:58979708-58979727 Msa0691040:intron 50.0%
CAGCGACCATCACTATCCAA+AGG - chr4_4:58979727-58979746 None:intergenic 50.0%
CTTTGGATAGTGATGGTCGC+TGG + chr4_4:58979725-58979744 Msa0691040:intron 50.0%
!! ACCTCTGGGGTTGAAGTCAT+GGG - chr4_4:58979777-58979796 None:intergenic 50.0%
ATGACTTCAACCCCAGAGGT+GGG + chr4_4:58979777-58979796 Msa0691040:intron 50.0%
CAACAAGGGTTGTGGGTGAT+AGG + chr4_4:58979831-58979850 Msa0691040:intron 50.0%
!! GAGTTAGCCTTCATAGTGGG+TGG + chr4_4:58979893-58979912 Msa0691040:intron 50.0%
GGGTGGTTGACTAGGTTACA+AGG + chr4_4:58979910-58979929 Msa0691040:intron 50.0%
! AGTGCTACTGCTGGTGATGA+TGG + chr4_4:58981665-58981684 Msa0691040:intron 50.0%
! GTGCTACTGCTGGTGATGAT+GGG + chr4_4:58981666-58981685 Msa0691040:intron 50.0%
! TGCTACTGCTGGTGATGATG+GGG + chr4_4:58981667-58981686 Msa0691040:CDS 50.0%
GCACCATGCTGTGATGAAAG+TGG + chr4_4:58981693-58981712 Msa0691040:CDS 50.0%
GTGGTTTGAAGAAGGGACCT+TGG + chr4_4:58981712-58981731 Msa0691040:CDS 50.0%
! GAAGTGCTCTCCAACTTCCA+TGG - chr4_4:58981785-58981804 None:intergenic 50.0%
! AGAGCACTTCCAAAGCTAGC+AGG + chr4_4:58981795-58981814 Msa0691040:CDS 50.0%
GTGGGAAGAGTTGCAGACTA+AGG + chr4_4:58981829-58981848 Msa0691040:CDS 50.0%
GGAAGAGTTGCAGACTAAGG+TGG + chr4_4:58981832-58981851 Msa0691040:intron 50.0%
! TAGCTAGGGACCTTTTTCCC+TGG + chr4_4:58982197-58982216 Msa0691040:intron 50.0%
GCTATAGCAGGTCATCTACC+AGG + chr4_4:58982326-58982345 Msa0691040:CDS 50.0%
GGATAGTGATGGTCGCTGGA+TGG + chr4_4:58979729-58979748 Msa0691040:intron 55.0%
CGCTGGATGGCCTCATTTGA+TGG + chr4_4:58979742-58979761 Msa0691040:intron 55.0%
ACCCATGACTTCAACCCCAG+AGG + chr4_4:58979773-58979792 Msa0691040:intron 55.0%
!! CACCTCTGGGGTTGAAGTCA+TGG - chr4_4:58979778-58979797 None:intergenic 55.0%
CATGACTTCAACCCCAGAGG+TGG + chr4_4:58979776-58979795 Msa0691040:intron 55.0%
TGACTTCAACCCCAGAGGTG+GGG + chr4_4:58979778-58979797 Msa0691040:intron 55.0%
AACTAGGGTAGGTGTCCACG+TGG - chr4_4:58980957-58980976 None:intergenic 55.0%
ACGTGGACACCTACCCTAGT+TGG + chr4_4:58980956-58980975 Msa0691040:intron 55.0%
! TGTCTGTGCAGTGCTACTGC+TGG + chr4_4:58981656-58981675 Msa0691040:intron 55.0%
CTGTCCTCTTCTGGTGTCCA+AGG - chr4_4:58981732-58981751 None:intergenic 55.0%
TAGCAGGTCATCTACCAGGG+AGG + chr4_4:58982330-58982349 Msa0691040:CDS 55.0%
GACTTCAACCCCAGAGGTGG+GGG + chr4_4:58979779-58979798 Msa0691040:intron 60.0%
GGGACCTTGGACACCAGAAG+AGG + chr4_4:58981725-58981744 Msa0691040:CDS 60.0%
CAGGTACACCCCCACCTCTG+GGG - chr4_4:58979790-58979809 None:intergenic 65.0%
GCAGGTACACCCCCACCTCT+GGG - chr4_4:58979791-58979810 None:intergenic 65.0%
TGCAGGTACACCCCCACCTC+TGG - chr4_4:58979792-58979811 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 58979570 58983096 58979570 ID=Msa0691040;Name=Msa0691040
chr4_4 mRNA 58979570 58983096 58979570 ID=Msa0691040-mRNA-1;Parent=Msa0691040;Name=Msa0691040-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.5|1|1|4|0|357
chr4_4 exon 58979570 58979652 58979570 ID=Msa0691040-mRNA-1:exon:15934;Parent=Msa0691040-mRNA-1
chr4_4 exon 58980102 58980130 58980102 ID=Msa0691040-mRNA-1:exon:15935;Parent=Msa0691040-mRNA-1
chr4_4 exon 58981667 58981850 58981667 ID=Msa0691040-mRNA-1:exon:15936;Parent=Msa0691040-mRNA-1
chr4_4 exon 58982319 58983096 58982319 ID=Msa0691040-mRNA-1:exon:15937;Parent=Msa0691040-mRNA-1
chr4_4 CDS 58979570 58979652 58979570 ID=Msa0691040-mRNA-1:cds;Parent=Msa0691040-mRNA-1
chr4_4 CDS 58980102 58980130 58980102 ID=Msa0691040-mRNA-1:cds;Parent=Msa0691040-mRNA-1
chr4_4 CDS 58981667 58981850 58981667 ID=Msa0691040-mRNA-1:cds;Parent=Msa0691040-mRNA-1
chr4_4 CDS 58982319 58983096 58982319 ID=Msa0691040-mRNA-1:cds;Parent=Msa0691040-mRNA-1
Gene Sequence

>Msa0691040

ATGTTCTGCTGGATCGATGATGATTTTTCTACAGACCTTCAAGTGGTGAAGCTTGATCTGAACCCTTGTCTTATGCCCAAATGGGGTTCTTATACCATCTTCTATGTGGCAGTGCTACTGCTGGTGATGATGGGGAGAGCACCATGCTGTGATGAAAGTGGTTTGAAGAAGGGACCTTGGACACCAGAAGAGGACAGAATATTGGTGAATCACATTAAGAAACATGGCCATGGAAGTTGGAGAGCACTTCCAAAGCTAGCAGGATTAAATAGGTGTGGGAAGAGTTGCAGACTAAGGTGGTCAGCTATAGCAGGTCATCTACCAGGGAGGACTGATAATGAAATAAAGAATTTTTGGAACACTCATTTAAAGAAAAAGCTTCTTCAAATGGGATTAGATCCAGTGACTCATCGTCCAAGAATTGATCATCTCAATCTTATGACAAATCTTCAACAGCTTCTTGCTGCAAACGTTCTCAATTATTTTCCAAACACTTTGGACACTGCTACTACTAATGCTCTTAGGCTTCAATCTGATGCAACCAAATTCCAATTGCTTCAAAACATGGTTCAAATTCAAGCCCTTAGTACCAATATTCATGCTCCTACCTCAAACTTGCAGTTACTCAATCCATTTGGACAATCTTCATCTTCATCACAGCAAGAAAATTTTCTAAATGAACTTTTAGGATTGAATCAATCCAATTATGCTTCTCAAAATCAGTGCAACTTTCAAAGCTTTCAAGTACCTCAGATGCAGCAAGTTTTAAGCAATGGATATCAGTTTATGGATAATGGTGGCAGCAACAACAGTAGTAGTTGCTTGAAGTCTGATCAAAAGGTTGATGAAGTATTTGATGCTACAAATTCTTCTTCGACGGTACCGATAAATTCGCTTCCGAATTTGGTTTCGGTTTCACCAGAATGTTCTGGTGTGAAAGAGATGATGGGAAACAAGGGGAACCAAAATGAGTGTTCCAATCCTTCTTCAACTTCAACTACCTTTGAAATGTTGGGAGATTTCATGTATGAGGATGTGAGCGATGCTTATTGGAAAGATCTCTTAGACTCTTAG
Protein sequence

>Msa0691040

MFCWIDDDFSTDLQVVKLDLNPCLMPKWGSYTIFYVAVLLLVMMGRAPCCDESGLKKGPWTPEEDRILVNHIKKHGHGSWRALPKLAGLNRCGKSCRLRWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRIDHLNLMTNLQQLLAANVLNYFPNTLDTATTNALRLQSDATKFQLLQNMVQIQALSTNIHAPTSNLQLLNPFGQSSSSSQQENFLNELLGLNQSNYASQNQCNFQSFQVPQMQQVLSNGYQFMDNGGSNNSSSCLKSDQKVDEVFDATNSSSTVPINSLPNLVSVSPECSGVKEMMGNKGNQNECSNPSSTSTTFEMLGDFMYEDVSDAYWKDLLDS*