Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691550 | XP_003607530.2 | 95.842 | 505 | 15 | 2 | 47 | 546 | 1 | 504 | 0.0 | 1003 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691550 | sp|Q9SGQ0|VOZ1_ARATH | 47.205 | 483 | 168 | 11 | 59 | 522 | 12 | 426 | 1.74e-133 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691550 | G7JUY7 | 95.842 | 505 | 15 | 2 | 47 | 546 | 1 | 504 | 0.0 | 1003 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0691550 | TF | VOZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691550 | MtrunA17_Chr4g0040681 | 95.842 | 505 | 15 | 2 | 47 | 546 | 1 | 504 | 0.0 | 1003 |
| Msa0691550 | MtrunA17_Chr4g0046291 | 47.853 | 489 | 190 | 11 | 59 | 543 | 11 | 438 | 5.09e-141 | 416 |
| Msa0691550 | MtrunA17_Chr2g0283011 | 43.284 | 67 | 37 | 1 | 60 | 125 | 10 | 76 | 5.39e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691550 | AT1G28520.4 | 47.205 | 483 | 168 | 11 | 59 | 522 | 12 | 426 | 1.77e-134 | 400 |
| Msa0691550 | AT1G28520.1 | 47.205 | 483 | 168 | 11 | 59 | 522 | 12 | 426 | 1.77e-134 | 400 |
| Msa0691550 | AT1G28520.2 | 47.205 | 483 | 168 | 11 | 59 | 522 | 12 | 426 | 1.77e-134 | 400 |
| Msa0691550 | AT1G28520.5 | 47.205 | 483 | 168 | 11 | 59 | 522 | 12 | 426 | 1.77e-134 | 400 |
| Msa0691550 | AT1G28520.3 | 45.417 | 480 | 165 | 10 | 59 | 522 | 12 | 410 | 6.09e-127 | 380 |
| Msa0691550 | AT2G42400.1 | 44.223 | 502 | 196 | 16 | 59 | 535 | 8 | 450 | 2.75e-117 | 354 |
Find 153 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAATTACACCACAAATTT+TGG | 0.120500 | 4_4:+59702219 | Msa0691550:CDS |
| GTGTCTCTCCTTCTCTTTCA+TGG | 0.160134 | 4_4:-59700249 | None:intergenic |
| GTGCACTGTGGGACTGTTTC+AGG | 0.229105 | 4_4:+59702310 | Msa0691550:CDS |
| CGGATATTTGGAAGAATATT+AGG | 0.243736 | 4_4:-59702255 | None:intergenic |
| AATTGAAAGACATACATTTA+AGG | 0.245998 | 4_4:-59700414 | None:intergenic |
| CCAGAGTCAAATGCCCTTCT+AGG | 0.246541 | 4_4:-59702830 | None:intergenic |
| ATGCCACCGGGTCGCAAAAT+TGG | 0.246756 | 4_4:-59702417 | None:intergenic |
| CAGTCCCACAGTGCACATTT+TGG | 0.247458 | 4_4:-59702303 | None:intergenic |
| GAAGGTGGAGGGCGGATATT+TGG | 0.256860 | 4_4:-59702267 | None:intergenic |
| CGTCAACTTGTAGATATTTC+AGG | 0.268738 | 4_4:+59703319 | Msa0691550:three_prime_UTR |
| GCCATGCCTGAGCTATTTAA+AGG | 0.279844 | 4_4:-59702018 | None:intergenic |
| TTTGACGCAACTACTTCTTC+TGG | 0.288517 | 4_4:-59699834 | None:intergenic |
| GGGAGCCTTGGGTCGTTTCC+CGG | 0.307766 | 4_4:+59700535 | Msa0691550:CDS |
| ATTCGGTTTGAATCAAGATA+TGG | 0.326854 | 4_4:+59702059 | Msa0691550:CDS |
| GGAGCCTTGGGTCGTTTCCC+GGG | 0.338311 | 4_4:+59700536 | Msa0691550:CDS |
| GCAACTACTTCTTCTGGAAT+TGG | 0.351512 | 4_4:-59699828 | None:intergenic |
| TTCTTGAGCGTGAAACTGTT+AGG | 0.354570 | 4_4:+59702786 | Msa0691550:CDS |
| TAGTAGTAATCACGAGCTTT+TGG | 0.358062 | 4_4:+59702368 | Msa0691550:CDS |
| TGTTCTTTGACCAGCCTAGA+AGG | 0.366077 | 4_4:+59702816 | Msa0691550:CDS |
| CAACCACGCCCACAATAATC+AGG | 0.369577 | 4_4:-59702875 | None:intergenic |
| AAAGCCCCTTGGAATGCTTC+AGG | 0.372413 | 4_4:+59702534 | Msa0691550:CDS |
| ATTCTATAGGATGGGAGCCT+TGG | 0.372943 | 4_4:+59700523 | Msa0691550:intron |
| CTTTCTTGCAGACTGAAGAT+TGG | 0.379338 | 4_4:-59700300 | None:intergenic |
| TTCTATAGGATGGGAGCCTT+GGG | 0.379881 | 4_4:+59700524 | Msa0691550:intron |
| CGGTTGGAGGAAGGTTGTTC+CGG | 0.396856 | 4_4:-59699915 | None:intergenic |
| GAGGCCAAGTCTCAGAATAT+TGG | 0.400679 | 4_4:+59703241 | Msa0691550:CDS |
| CAAGTTGACGACCAGTCATT+TGG | 0.405690 | 4_4:-59703306 | None:intergenic |
| CCAACTGTTGCAAGGATTTG+AGG | 0.409048 | 4_4:+59700567 | Msa0691550:CDS |
| CAGCTCTGATTTAATTTGTC+GGG | 0.416431 | 4_4:+59702101 | Msa0691550:CDS |
| TTTCTGGTAAGCAACCTTCA+TGG | 0.419867 | 4_4:-59703015 | None:intergenic |
| CAATCTTCAGTCTGCAAGAA+AGG | 0.425162 | 4_4:+59700301 | Msa0691550:CDS |
| CAACAGTTGGGCTAATTCCC+CGG | 0.428013 | 4_4:-59700554 | None:intergenic |
| CCTCAAATCCTTGCAACAGT+TGG | 0.442007 | 4_4:-59700567 | None:intergenic |
| GACTGTTTCAGGCCTGCTCA+AGG | 0.443030 | 4_4:+59702321 | Msa0691550:CDS |
| GCTGCTCCGTCGCCAGATGA+TGG | 0.448458 | 4_4:+59703196 | Msa0691550:CDS |
| GCTCAATTTAATCTTGAAGA+AGG | 0.449693 | 4_4:+59702168 | Msa0691550:CDS |
| ATCAGTCCTCTGACTAAACC+TGG | 0.453669 | 4_4:+59700604 | Msa0691550:CDS |
| CCTAGAAGGGCATTTGACTC+TGG | 0.453832 | 4_4:+59702830 | Msa0691550:CDS |
| TAGCTCAGGCATGGCTCAGT+TGG | 0.463141 | 4_4:+59702026 | Msa0691550:CDS |
| TGCTGATTTACAAAACAAGA+TGG | 0.465472 | 4_4:+59703159 | Msa0691550:CDS |
| TGAAGCAGCACCTTCACACT+TGG | 0.468496 | 4_4:-59702508 | None:intergenic |
| GCTAGGAAAGCAGAAGGTGG+AGG | 0.468704 | 4_4:-59702279 | None:intergenic |
| TGCCACTCAACATAATCAAC+AGG | 0.470016 | 4_4:-59702968 | None:intergenic |
| CTCAAATCCTTGCAACAGTT+GGG | 0.481803 | 4_4:-59700566 | None:intergenic |
| AGCAGTCCTTTAAATAGCTC+AGG | 0.483033 | 4_4:+59702012 | Msa0691550:CDS |
| TCTTGAGCGTGAAACTGTTA+GGG | 0.483389 | 4_4:+59702787 | Msa0691550:CDS |
| CAGGCCAATATTCTGAGACT+TGG | 0.484185 | 4_4:-59703245 | None:intergenic |
| CTGATTATTGTGGGCGTGGT+TGG | 0.485513 | 4_4:+59702876 | Msa0691550:CDS |
| CTTGTAGATATTTCAGGATG+GGG | 0.495380 | 4_4:+59703325 | Msa0691550:three_prime_UTR |
| TCCTAAAGGAAAAGTGACTA+AGG | 0.496242 | 4_4:+59703129 | Msa0691550:CDS |
| AGAATATACCTTGAGGCGGT+TGG | 0.496846 | 4_4:-59699931 | None:intergenic |
| ACAAATCGCCGCCGAGGGTA+GGG | 0.496907 | 4_4:+59699881 | Msa0691550:CDS |
| CACATGGTGAATAAGATTCA+AGG | 0.499116 | 4_4:+59700269 | Msa0691550:CDS |
| CTGCTTCAACGAAAGCCCCT+TGG | 0.502920 | 4_4:+59702523 | Msa0691550:CDS |
| AACAGTTGGGCTAATTCCCC+GGG | 0.504414 | 4_4:-59700553 | None:intergenic |
| CACTGCTCTAACCCTTGAGC+AGG | 0.504462 | 4_4:-59702333 | None:intergenic |
| ACTTGTAGATATTTCAGGAT+GGG | 0.505404 | 4_4:+59703324 | Msa0691550:three_prime_UTR |
| CATACATTTAAGGAGGTAGC+TGG | 0.508452 | 4_4:-59700404 | None:intergenic |
| TCAGGATGGGGTTCAGATTG+TGG | 0.509656 | 4_4:+59703337 | Msa0691550:three_prime_UTR |
| GTCTTTCACATCAATGCCAC+CGG | 0.511773 | 4_4:-59702430 | None:intergenic |
| GATTACTACTACAGTAATCC+TGG | 0.514174 | 4_4:-59702356 | None:intergenic |
| ATCAAGGAAGCAGGTGATGA+AGG | 0.514451 | 4_4:+59702904 | Msa0691550:CDS |
| ATTTGTCGGGACCACAGCCT+CGG | 0.516229 | 4_4:+59702114 | Msa0691550:CDS |
| AGTCAAATGCCCTTCTAGGC+TGG | 0.516631 | 4_4:-59702826 | None:intergenic |
| TGCTGTTCTTGCAAAGACAC+TGG | 0.517048 | 4_4:+59702467 | Msa0691550:CDS |
| AAAGTTGTCTCCAAAATTTG+TGG | 0.522041 | 4_4:-59702229 | None:intergenic |
| ACAGCTCTGATTTAATTTGT+CGG | 0.522169 | 4_4:+59702100 | Msa0691550:CDS |
| GAGCCTTGGGTCGTTTCCCG+GGG | 0.527121 | 4_4:+59700537 | Msa0691550:CDS |
| TTGTTGATAAGCAACGATCA+TGG | 0.529822 | 4_4:-59703045 | None:intergenic |
| TTTGTCGGGACCACAGCCTC+GGG | 0.529845 | 4_4:+59702115 | Msa0691550:CDS |
| ATCCCTGATTATTGTGGGCG+TGG | 0.530254 | 4_4:+59702872 | Msa0691550:CDS |
| GGGCATTTGACTCTGGAACT+AGG | 0.533243 | 4_4:+59702837 | Msa0691550:CDS |
| AAGCAGGTGATGAAGGAACA+TGG | 0.536829 | 4_4:+59702911 | Msa0691550:CDS |
| AGATCCATCCCTGATTATTG+TGG | 0.539369 | 4_4:+59702866 | Msa0691550:CDS |
| GATCCATCCCTGATTATTGT+GGG | 0.542160 | 4_4:+59702867 | Msa0691550:CDS |
| GAAGCAGCACCTTCACACTT+GGG | 0.543360 | 4_4:-59702507 | None:intergenic |
| ATATACCTTGAGGCGGTTGG+AGG | 0.544794 | 4_4:-59699928 | None:intergenic |
| ACTGTTTCAGGCCTGCTCAA+GGG | 0.545418 | 4_4:+59702322 | Msa0691550:CDS |
| TCAGAAATCCATGAAAGAGA+AGG | 0.547366 | 4_4:+59700241 | Msa0691550:CDS |
| CTGCGTTGTACCCGAGGCTG+TGG | 0.548854 | 4_4:-59702125 | None:intergenic |
| TACTAACCTGAAGCATTCCA+AGG | 0.549098 | 4_4:-59702540 | None:intergenic |
| TCAACATAATCAACAGGCTG+TGG | 0.549517 | 4_4:-59702962 | None:intergenic |
| GCTGATTTACAAAACAAGAT+GGG | 0.550937 | 4_4:+59703160 | Msa0691550:CDS |
| TATGAAATCAATAACCATGA+AGG | 0.551452 | 4_4:+59703001 | Msa0691550:CDS |
| CGAAAGTATGACCTAGTGAC+TGG | 0.552272 | 4_4:-59701966 | None:intergenic |
| TTCAAACAAATCGCCGCCGA+GGG | 0.552343 | 4_4:+59699876 | Msa0691550:CDS |
| TTACTTCTGCGTTGTACCCG+AGG | 0.555658 | 4_4:-59702131 | None:intergenic |
| AGCCCCAAAATGTGCACTGT+GGG | 0.556411 | 4_4:+59702299 | Msa0691550:CDS |
| AGGTTTAGTCAGAGGACTGA+TGG | 0.559286 | 4_4:-59700602 | None:intergenic |
| GTTCTTTGACCAGCCTAGAA+GGG | 0.561727 | 4_4:+59702817 | Msa0691550:CDS |
| CTAGGAAAGCAGAAGGTGGA+GGG | 0.562417 | 4_4:-59702278 | None:intergenic |
| AACAAATCGCCGCCGAGGGT+AGG | 0.562847 | 4_4:+59699880 | Msa0691550:CDS |
| TCAGTTGCTTCGAGAGTGGA+AGG | 0.563881 | 4_4:+59700367 | Msa0691550:CDS |
| CTTCAAACAAATCGCCGCCG+AGG | 0.566974 | 4_4:+59699875 | Msa0691550:CDS |
| ACCTTGAGGCGGTTGGAGGA+AGG | 0.566975 | 4_4:-59699924 | None:intergenic |
| AAAGACACTGGGAAAAGAAG+TGG | 0.569750 | 4_4:+59702479 | Msa0691550:CDS |
| TAATCAGTGTTAAACAGCCC+AGG | 0.573081 | 4_4:-59700622 | None:intergenic |
| TTGGCATGAATCAAGGAAGC+AGG | 0.575003 | 4_4:+59702895 | Msa0691550:CDS |
| AACTTGTAGATATTTCAGGA+TGG | 0.575198 | 4_4:+59703323 | Msa0691550:three_prime_UTR |
| TCCTTTAAATAGCTCAGGCA+TGG | 0.578059 | 4_4:+59702017 | Msa0691550:CDS |
| TGCATCAGTTGCTTCGAGAG+TGG | 0.578160 | 4_4:+59700363 | Msa0691550:CDS |
| TACTGATATTCTCATCATTG+AGG | 0.580303 | 4_4:+59700334 | Msa0691550:CDS |
| GGCGTGGTTGGCATGAATCA+AGG | 0.581508 | 4_4:+59702888 | Msa0691550:CDS |
| GAATTAGCCCAACTGTTGCA+AGG | 0.582018 | 4_4:+59700559 | Msa0691550:CDS |
| AAGCAGCACCTTCACACTTG+GGG | 0.584353 | 4_4:-59702506 | None:intergenic |
| TTGGAGGAAGGTTGTTCCGG+TGG | 0.584750 | 4_4:-59699912 | None:intergenic |
| AGCAGGTGATGAAGGAACAT+GGG | 0.587152 | 4_4:+59702912 | Msa0691550:CDS |
| AGATGATGGAAAATCTGTCA+AGG | 0.589213 | 4_4:+59703210 | Msa0691550:CDS |
| TCAAGGGTTAGAGCAGTGCC+AGG | 0.589320 | 4_4:+59702338 | Msa0691550:CDS |
| GCTGTTCTTGCAAAGACACT+GGG | 0.597625 | 4_4:+59702468 | Msa0691550:CDS |
| GGGTAGGGTTCTCATTCCAC+CGG | 0.600797 | 4_4:+59699896 | Msa0691550:CDS |
| GATATGGATCACAACGCTGT+AGG | 0.601822 | 4_4:+59702075 | Msa0691550:CDS |
| TGACTGATTATTGTGGTGGT+AGG | 0.602008 | 4_4:+59703389 | Msa0691550:three_prime_UTR |
| AACAGCCCAGGTTTAGTCAG+AGG | 0.603193 | 4_4:-59700610 | None:intergenic |
| ACAAAAGAGATCATATTACA+TGG | 0.603201 | 4_4:+59702937 | Msa0691550:CDS |
| GTGGGCATCCCCAAGTGTGA+AGG | 0.608412 | 4_4:+59702498 | Msa0691550:CDS |
| ACCTTCCTCCAACCGCCTCA+AGG | 0.610581 | 4_4:+59699923 | Msa0691550:CDS |
| GTATGATGAAAGAAAACTCA+GGG | 0.611743 | 4_4:+59700195 | Msa0691550:CDS |
| TGAAAGACATACATTTAAGG+AGG | 0.614720 | 4_4:-59700411 | None:intergenic |
| AATATTCTGAGACTTGGCCT+CGG | 0.616309 | 4_4:-59703239 | None:intergenic |
| GGTATGATGAAAGAAAACTC+AGG | 0.617008 | 4_4:+59700194 | Msa0691550:CDS |
| ACATGGTGAATAAGATTCAA+GGG | 0.617617 | 4_4:+59700270 | Msa0691550:CDS |
| TCACTAGGTCATACTTTCGA+AGG | 0.619681 | 4_4:+59701970 | Msa0691550:CDS |
| AAGACACTGGGAAAAGAAGT+GGG | 0.621213 | 4_4:+59702480 | Msa0691550:CDS |
| ACGCCCACAATAATCAGGGA+TGG | 0.621905 | 4_4:-59702870 | None:intergenic |
| AGCGTGAAACTGTTAGGGAG+TGG | 0.622146 | 4_4:+59702792 | Msa0691550:CDS |
| GGGGCTAGGAAAGCAGAAGG+TGG | 0.622810 | 4_4:-59702282 | None:intergenic |
| ACTAACCTGAAGCATTCCAA+GGG | 0.625065 | 4_4:-59702539 | None:intergenic |
| TTTGATAATAACCAGTCACT+AGG | 0.626203 | 4_4:+59701955 | Msa0691550:CDS |
| TTTGGGGCTAGGAAAGCAGA+AGG | 0.630230 | 4_4:-59702285 | None:intergenic |
| TGGAATGAGAACCCTACCCT+CGG | 0.631803 | 4_4:-59699892 | None:intergenic |
| GATGATGGAAAATCTGTCAA+GGG | 0.632198 | 4_4:+59703211 | Msa0691550:CDS |
| GCAAGAACAGCAGCAAACAA+AGG | 0.637682 | 4_4:-59702456 | None:intergenic |
| GTCTGTATAATGCACAACCA+TGG | 0.640803 | 4_4:-59703075 | None:intergenic |
| AACCACGCCCACAATAATCA+GGG | 0.641167 | 4_4:-59702874 | None:intergenic |
| GCAGGTGATGAAGGAACATG+GGG | 0.643689 | 4_4:+59702913 | Msa0691550:CDS |
| ATTCCCCGGGAAACGACCCA+AGG | 0.645718 | 4_4:-59700540 | None:intergenic |
| AGCCTGTTGATTATGTTGAG+TGG | 0.648782 | 4_4:+59702966 | Msa0691550:CDS |
| TCAGTCCTCTGACTAAACCT+GGG | 0.653984 | 4_4:+59700605 | Msa0691550:CDS |
| GGTGGCATTGATGTGAAAGA+CGG | 0.664083 | 4_4:+59702432 | Msa0691550:CDS |
| GGAAAGCAGAAGGTGGAGGG+CGG | 0.666552 | 4_4:-59702275 | None:intergenic |
| TCTTTCACATCAATGCCACC+GGG | 0.675182 | 4_4:-59702429 | None:intergenic |
| GTAATGACTGATTATTGTGG+TGG | 0.676509 | 4_4:+59703385 | Msa0691550:three_prime_UTR |
| CAACATAATCAACAGGCTGT+GGG | 0.679528 | 4_4:-59702961 | None:intergenic |
| AGTAAGAATATACCTTGAGG+CGG | 0.683868 | 4_4:-59699935 | None:intergenic |
| ATGATGAAAGAAAACTCAGG+GGG | 0.696312 | 4_4:+59700197 | Msa0691550:CDS |
| GAAAGAGAAGGAGAGACACA+TGG | 0.697093 | 4_4:+59700253 | Msa0691550:CDS |
| TAGCCCCAAAATGTGCACTG+TGG | 0.701568 | 4_4:+59702298 | Msa0691550:CDS |
| AATGAGAACCCTACCCTCGG+CGG | 0.726593 | 4_4:-59699889 | None:intergenic |
| CTAACCTGAAGCATTCCAAG+GGG | 0.741948 | 4_4:-59702538 | None:intergenic |
| AAGGTAATGACTGATTATTG+TGG | 0.742590 | 4_4:+59703382 | Msa0691550:three_prime_UTR |
| TATGATGAAAGAAAACTCAG+GGG | 0.752762 | 4_4:+59700196 | Msa0691550:CDS |
| CAGGTGATGAAGGAACATGG+GGG | 0.853574 | 4_4:+59702914 | Msa0691550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+GGG | - | chr4_4:59700866-59700885 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | - | chr4_4:59700867-59700886 | None:intergenic | 0.0% |
| !! | AATTACAAAAAAAAAAAAGA+GGG | - | chr4_4:59701806-59701825 | None:intergenic | 10.0% |
| !! | AAATTACAAAAAAAAAAAAG+AGG | - | chr4_4:59701807-59701826 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTGAAGGA+AGG | + | chr4_4:59700173-59700192 | Msa0691550:intron | 15.0% |
| !! | ATGTATTTATATGTATATGT+TGG | + | chr4_4:59700499-59700518 | Msa0691550:intron | 15.0% |
| !! | ATTAGAAAAGAAAACAATTA+GGG | - | chr4_4:59700986-59701005 | None:intergenic | 15.0% |
| !!! | TAGATTAGTTTATTAAACTA+TGG | - | chr4_4:59701144-59701163 | None:intergenic | 15.0% |
| !!! | ATGTTAAATATTTCCATTTT+AGG | - | chr4_4:59701517-59701536 | None:intergenic | 15.0% |
| !!! | GAAGTATTTTTTTAATATTC+AGG | - | chr4_4:59703271-59703290 | None:intergenic | 15.0% |
| !! | AATTGAAAGACATACATTTA+AGG | - | chr4_4:59700417-59700436 | None:intergenic | 20.0% |
| !!! | TATCAGTAATGTTATTTTGA+TGG | - | chr4_4:59700648-59700667 | None:intergenic | 20.0% |
| !! | ATATATATATAGGGGTTATA+CGG | - | chr4_4:59700857-59700876 | None:intergenic | 20.0% |
| !! | CATTAGAAAAGAAAACAATT+AGG | - | chr4_4:59700987-59701006 | None:intergenic | 20.0% |
| !! | CATAATTTAGAAAAGGAAAT+CGG | - | chr4_4:59701056-59701075 | None:intergenic | 20.0% |
| !! | TTTGTGACATAATTTAGAAA+AGG | - | chr4_4:59701063-59701082 | None:intergenic | 20.0% |
| !!! | TTTTTTAACCTTCTTGTTTA+CGG | + | chr4_4:59701224-59701243 | Msa0691550:intron | 20.0% |
| !! | AAATATTTAACATAGAACCT+AGG | + | chr4_4:59701524-59701543 | Msa0691550:intron | 20.0% |
| !! | AATATTTAACATAGAACCTA+GGG | + | chr4_4:59701525-59701544 | Msa0691550:intron | 20.0% |
| !! | ACAGTTATATATATAAGCTA+TGG | - | chr4_4:59701551-59701570 | None:intergenic | 20.0% |
| !! | ATTCAGTATATTCAGAAATA+TGG | + | chr4_4:59701641-59701660 | Msa0691550:intron | 20.0% |
| !! | ATTAAATGTGATATAGAAGA+AGG | + | chr4_4:59702638-59702657 | Msa0691550:intron | 20.0% |
| !! | TTATCAACAAAAATTAACCA+TGG | + | chr4_4:59703058-59703077 | Msa0691550:CDS | 20.0% |
| !!! | TATTTTTTTAATATTCAGGC+AGG | - | chr4_4:59703267-59703286 | None:intergenic | 20.0% |
| !!! | TGGAAATTTTTAACATTTCT+TGG | + | chr4_4:59703357-59703376 | Msa0691550:three_prime_UTR | 20.0% |
| !!! | AAATTGCTTTTTGTATGTTT+GGG | + | chr4_4:59703490-59703509 | Msa0691550:three_prime_UTR | 20.0% |
| ! | TTGAATTTATAGTGATCGAT+CGG | - | chr4_4:59699967-59699986 | None:intergenic | 25.0% |
| ! | GGAATAAACACAGATATTAT+TGG | - | chr4_4:59700453-59700472 | None:intergenic | 25.0% |
| ! | TATATTTCATATCTCTTTGC+AGG | - | chr4_4:59700480-59700499 | None:intergenic | 25.0% |
| !!! | TAGCAATTATGAGTTTTATC+AGG | + | chr4_4:59700666-59700685 | Msa0691550:CDS | 25.0% |
| ! | GAGAATCTTCTATATATCTT+TGG | + | chr4_4:59700714-59700733 | Msa0691550:intron | 25.0% |
| ! | AAAAGAAAACAATTAGGGTA+AGG | - | chr4_4:59700981-59701000 | None:intergenic | 25.0% |
| ! | TTCTAAATTATGTCACAAAC+TGG | + | chr4_4:59701064-59701083 | Msa0691550:intron | 25.0% |
| !!! | TTTTTAACCTTCTTGTTTAC+GGG | + | chr4_4:59701225-59701244 | Msa0691550:intron | 25.0% |
| ! | ACAAATGAATTTCAACAAGT+TGG | - | chr4_4:59701366-59701385 | None:intergenic | 25.0% |
| !! | TTGTTGAAATTCATTTGTTG+AGG | + | chr4_4:59701368-59701387 | Msa0691550:intron | 25.0% |
| !! | TTTCTTTAAGAGATAACAAC+TGG | + | chr4_4:59701909-59701928 | Msa0691550:intron | 25.0% |
| !! | GATAATTACACCACAAATTT+TGG | + | chr4_4:59702219-59702238 | Msa0691550:CDS | 25.0% |
| ! | ACAAAAGAGATCATATTACA+TGG | + | chr4_4:59702937-59702956 | Msa0691550:CDS | 25.0% |
| ! | TATGAAATCAATAACCATGA+AGG | + | chr4_4:59703001-59703020 | Msa0691550:CDS | 25.0% |
| ! | GATAAAAAGAAAAGTCCTAA+AGG | + | chr4_4:59703115-59703134 | Msa0691550:CDS | 25.0% |
| !! | TTTTTAACATTTCTTGGACA+AGG | + | chr4_4:59703363-59703382 | Msa0691550:three_prime_UTR | 25.0% |
| !!! | CAAATTGCTTTTTGTATGTT+TGG | + | chr4_4:59703489-59703508 | Msa0691550:three_prime_UTR | 25.0% |
| !!! | AATTGCTTTTTGTATGTTTG+GGG | + | chr4_4:59703491-59703510 | Msa0691550:three_prime_UTR | 25.0% |
| CAAAGTAAGAATATACCTTG+AGG | - | chr4_4:59699941-59699960 | None:intergenic | 30.0% | |
| CATAACAAACTCATAGAAAG+TGG | - | chr4_4:59700130-59700149 | None:intergenic | 30.0% | |
| GTATGATGAAAGAAAACTCA+GGG | + | chr4_4:59700195-59700214 | Msa0691550:CDS | 30.0% | |
| TATGATGAAAGAAAACTCAG+GGG | + | chr4_4:59700196-59700215 | Msa0691550:CDS | 30.0% | |
| ACATGGTGAATAAGATTCAA+GGG | + | chr4_4:59700270-59700289 | Msa0691550:CDS | 30.0% | |
| TACTGATATTCTCATCATTG+AGG | + | chr4_4:59700334-59700353 | Msa0691550:CDS | 30.0% | |
| TGAAAGACATACATTTAAGG+AGG | - | chr4_4:59700414-59700433 | None:intergenic | 30.0% | |
| TGTATATGTTGGCATTCTAT+AGG | + | chr4_4:59700510-59700529 | Msa0691550:intron | 30.0% | |
| !! | CAATTATGAGTTTTATCAGG+AGG | + | chr4_4:59700669-59700688 | Msa0691550:CDS | 30.0% |
| TCACAATGTTAGTATTATGC+TGG | + | chr4_4:59700760-59700779 | Msa0691550:intron | 30.0% | |
| CACAATGTTAGTATTATGCT+GGG | + | chr4_4:59700761-59700780 | Msa0691550:intron | 30.0% | |
| CTAATCTAATTCCTATCATG+TGG | + | chr4_4:59701156-59701175 | Msa0691550:intron | 30.0% | |
| TAAAAAATGTGTCAGCCAAT+AGG | - | chr4_4:59701211-59701230 | None:intergenic | 30.0% | |
| !! | TTTTAACCTTCTTGTTTACG+GGG | + | chr4_4:59701226-59701245 | Msa0691550:intron | 30.0% |
| TGAACTGAAAAATCAGAACA+AGG | - | chr4_4:59701335-59701354 | None:intergenic | 30.0% | |
| !! | GTTTTCTAAGAGTTCTCTTT+TGG | - | chr4_4:59701402-59701421 | None:intergenic | 30.0% |
| !! | CTTAGAAAACATTTCTAGTC+AGG | + | chr4_4:59701412-59701431 | Msa0691550:intron | 30.0% |
| AAGTGGTTAATTAAGTGAAG+TGG | - | chr4_4:59701479-59701498 | None:intergenic | 30.0% | |
| !! | GATTATTAGCCTTTCATTTG+TGG | + | chr4_4:59701736-59701755 | Msa0691550:intron | 30.0% |
| TTAATCACACCACAAATGAA+AGG | - | chr4_4:59701748-59701767 | None:intergenic | 30.0% | |
| GTTATCTCTTAAAGAAAAGC+AGG | - | chr4_4:59701906-59701925 | None:intergenic | 30.0% | |
| ! | TTTGATAATAACCAGTCACT+AGG | + | chr4_4:59701955-59701974 | Msa0691550:CDS | 30.0% |
| ! | CAGTTGGATTTTCATTCATT+CGG | + | chr4_4:59702042-59702061 | Msa0691550:CDS | 30.0% |
| ! | ATTCGGTTTGAATCAAGATA+TGG | + | chr4_4:59702059-59702078 | Msa0691550:CDS | 30.0% |
| !! | ACAGCTCTGATTTAATTTGT+CGG | + | chr4_4:59702100-59702119 | Msa0691550:CDS | 30.0% |
| GCTCAATTTAATCTTGAAGA+AGG | + | chr4_4:59702168-59702187 | Msa0691550:CDS | 30.0% | |
| ! | GATGAGTATGATCAACTTTT+CGG | + | chr4_4:59702195-59702214 | Msa0691550:CDS | 30.0% |
| AAAGTTGTCTCCAAAATTTG+TGG | - | chr4_4:59702232-59702251 | None:intergenic | 30.0% | |
| CGGATATTTGGAAGAATATT+AGG | - | chr4_4:59702258-59702277 | None:intergenic | 30.0% | |
| ATCTTGCAAATTCTACAACT+AGG | + | chr4_4:59702609-59702628 | Msa0691550:intron | 30.0% | |
| ! | ACTTGTTTCTTTCGTCTATT+TGG | + | chr4_4:59702702-59702721 | Msa0691550:intron | 30.0% |
| TTTCTTTCGTCTATTTGGTT+GGG | + | chr4_4:59702707-59702726 | Msa0691550:intron | 30.0% | |
| !!! | CGATCATGGTTATTTTTTTC+TGG | - | chr4_4:59703034-59703053 | None:intergenic | 30.0% |
| !! | TGCTGATTTACAAAACAAGA+TGG | + | chr4_4:59703159-59703178 | Msa0691550:CDS | 30.0% |
| ! | GCTGATTTACAAAACAAGAT+GGG | + | chr4_4:59703160-59703179 | Msa0691550:CDS | 30.0% |
| AACTTGTAGATATTTCAGGA+TGG | + | chr4_4:59703323-59703342 | Msa0691550:three_prime_UTR | 30.0% | |
| ACTTGTAGATATTTCAGGAT+GGG | + | chr4_4:59703324-59703343 | Msa0691550:three_prime_UTR | 30.0% | |
| AAGGTAATGACTGATTATTG+TGG | + | chr4_4:59703382-59703401 | Msa0691550:three_prime_UTR | 30.0% | |
| AGTAAGAATATACCTTGAGG+CGG | - | chr4_4:59699938-59699957 | None:intergenic | 35.0% | |
| AACCCTAGAATTTCTCAACT+AGG | + | chr4_4:59700000-59700019 | Msa0691550:intron | 35.0% | |
| GACCTAGTTGAGAAATTCTA+GGG | - | chr4_4:59700005-59700024 | None:intergenic | 35.0% | |
| AGACCTAGTTGAGAAATTCT+AGG | - | chr4_4:59700006-59700025 | None:intergenic | 35.0% | |
| ! | AATGCCTATTTTGTGTGTCT+TGG | + | chr4_4:59700063-59700082 | Msa0691550:intron | 35.0% |
| GGTATGATGAAAGAAAACTC+AGG | + | chr4_4:59700194-59700213 | Msa0691550:CDS | 35.0% | |
| ATGATGAAAGAAAACTCAGG+GGG | + | chr4_4:59700197-59700216 | Msa0691550:CDS | 35.0% | |
| TCAGAAATCCATGAAAGAGA+AGG | + | chr4_4:59700241-59700260 | Msa0691550:CDS | 35.0% | |
| CACATGGTGAATAAGATTCA+AGG | + | chr4_4:59700269-59700288 | Msa0691550:CDS | 35.0% | |
| TTCATATCTCTTTGCAGGAT+GGG | - | chr4_4:59700475-59700494 | None:intergenic | 35.0% | |
| TTTCATATCTCTTTGCAGGA+TGG | - | chr4_4:59700476-59700495 | None:intergenic | 35.0% | |
| TATGTTGGCATTCTATAGGA+TGG | + | chr4_4:59700514-59700533 | Msa0691550:intron | 35.0% | |
| ATGTTGGCATTCTATAGGAT+GGG | + | chr4_4:59700515-59700534 | Msa0691550:intron | 35.0% | |
| TGAGTTTCTTTCACTTGTTC+TGG | + | chr4_4:59700692-59700711 | Msa0691550:intron | 35.0% | |
| TGTTAGTATTATGCTGGGAT+TGG | + | chr4_4:59700766-59700785 | Msa0691550:intron | 35.0% | |
| ATATATAGGGGTTATACGGA+TGG | - | chr4_4:59700853-59700872 | None:intergenic | 35.0% | |
| CGGAATAGTAGAACAATGTA+AGG | - | chr4_4:59701036-59701055 | None:intergenic | 35.0% | |
| ATTAGACACAATCGTACAAC+CGG | - | chr4_4:59701093-59701112 | None:intergenic | 35.0% | |
| ! | AGTGATACACTTTGGGAATT+GGG | - | chr4_4:59701268-59701287 | None:intergenic | 35.0% |
| CACTTAATTAACCACTTGAG+TGG | + | chr4_4:59701482-59701501 | Msa0691550:intron | 35.0% | |
| ! | GTGGTTAGTTGTTCCTAAAA+TGG | + | chr4_4:59701501-59701520 | Msa0691550:intron | 35.0% |
| TATATATAAGCTATGGCCCT+AGG | - | chr4_4:59701544-59701563 | None:intergenic | 35.0% | |
| CTAATAATCGTACTAGCTGA+TGG | - | chr4_4:59701725-59701744 | None:intergenic | 35.0% | |
| TCAAAACATTTCTGCACGAA+TGG | - | chr4_4:59701940-59701959 | None:intergenic | 35.0% | |
| !! | CAGCTCTGATTTAATTTGTC+GGG | + | chr4_4:59702101-59702120 | Msa0691550:CDS | 35.0% |
| GATTACTACTACAGTAATCC+TGG | - | chr4_4:59702359-59702378 | None:intergenic | 35.0% | |
| ! | TAGTAGTAATCACGAGCTTT+TGG | + | chr4_4:59702368-59702387 | Msa0691550:CDS | 35.0% |
| GTTTCTTTCGTCTATTTGGT+TGG | + | chr4_4:59702706-59702725 | Msa0691550:intron | 35.0% | |
| ! | TTGTTGATAAGCAACGATCA+TGG | - | chr4_4:59703048-59703067 | None:intergenic | 35.0% |
| TCCTAAAGGAAAAGTGACTA+AGG | + | chr4_4:59703129-59703148 | Msa0691550:CDS | 35.0% | |
| !!! | TCCTTAGTCACTTTTCCTTT+AGG | - | chr4_4:59703133-59703152 | None:intergenic | 35.0% |
| ! | TTGACAGATTTTCCATCATC+TGG | - | chr4_4:59703211-59703230 | None:intergenic | 35.0% |
| !! | AGATGATGGAAAATCTGTCA+AGG | + | chr4_4:59703210-59703229 | Msa0691550:CDS | 35.0% |
| !! | GATGATGGAAAATCTGTCAA+GGG | + | chr4_4:59703211-59703230 | Msa0691550:CDS | 35.0% |
| ! | GATGATTTTTGCCAAATGAC+TGG | + | chr4_4:59703295-59703314 | Msa0691550:three_prime_UTR | 35.0% |
| CGTCAACTTGTAGATATTTC+AGG | + | chr4_4:59703319-59703338 | Msa0691550:three_prime_UTR | 35.0% | |
| CTTGTAGATATTTCAGGATG+GGG | + | chr4_4:59703325-59703344 | Msa0691550:three_prime_UTR | 35.0% | |
| GTAATGACTGATTATTGTGG+TGG | + | chr4_4:59703385-59703404 | Msa0691550:three_prime_UTR | 35.0% | |
| !! | GCAACTACTTCTTCTGGAAT+TGG | - | chr4_4:59699831-59699850 | None:intergenic | 40.0% |
| TTTGACGCAACTACTTCTTC+TGG | - | chr4_4:59699837-59699856 | None:intergenic | 40.0% | |
| GGAACCAAGACACACAAAAT+AGG | - | chr4_4:59700070-59700089 | None:intergenic | 40.0% | |
| ! | ATTTTGTGTGTCTTGGTTCC+CGG | + | chr4_4:59700070-59700089 | Msa0691550:intron | 40.0% |
| GAAAACTCAGGGGGAAAATA+TGG | + | chr4_4:59700206-59700225 | Msa0691550:CDS | 40.0% | |
| CTTTCTTGCAGACTGAAGAT+TGG | - | chr4_4:59700303-59700322 | None:intergenic | 40.0% | |
| CAATCTTCAGTCTGCAAGAA+AGG | + | chr4_4:59700301-59700320 | Msa0691550:CDS | 40.0% | |
| CATACATTTAAGGAGGTAGC+TGG | - | chr4_4:59700407-59700426 | None:intergenic | 40.0% | |
| TCATATCTCTTTGCAGGATG+GGG | - | chr4_4:59700474-59700493 | None:intergenic | 40.0% | |
| CTCAAATCCTTGCAACAGTT+GGG | - | chr4_4:59700569-59700588 | None:intergenic | 40.0% | |
| TAATCAGTGTTAAACAGCCC+AGG | - | chr4_4:59700625-59700644 | None:intergenic | 40.0% | |
| TAAGGAGTGGAGTGATAAGA+AGG | - | chr4_4:59700807-59700826 | None:intergenic | 40.0% | |
| !! | GCGTGACATGTTAATTTGTC+TGG | + | chr4_4:59700936-59700955 | Msa0691550:intron | 40.0% |
| ! | TTATGTCACAAACTGGTCTC+CGG | + | chr4_4:59701071-59701090 | Msa0691550:intron | 40.0% |
| AATTCCTATCATGTGGTGTG+CGG | + | chr4_4:59701163-59701182 | Msa0691550:intron | 40.0% | |
| !!! | TGCGGTCTTTTAGTTCATTC+AGG | + | chr4_4:59701181-59701200 | Msa0691550:intron | 40.0% |
| GTTCATTCAGGCAAACCTAT+TGG | + | chr4_4:59701193-59701212 | Msa0691550:intron | 40.0% | |
| GTAATTCCCCGTAAACAAGA+AGG | - | chr4_4:59701235-59701254 | None:intergenic | 40.0% | |
| ! | ATACACTTTGGGAATTGGGT+GGG | - | chr4_4:59701264-59701283 | None:intergenic | 40.0% |
| ! | GAGTGATACACTTTGGGAAT+TGG | - | chr4_4:59701269-59701288 | None:intergenic | 40.0% |
| CCTAAAGAGATCAGATGACT+TGG | - | chr4_4:59701301-59701320 | None:intergenic | 40.0% | |
| CCAAGTCATCTGATCTCTTT+AGG | + | chr4_4:59701298-59701317 | Msa0691550:intron | 40.0% | |
| !! | AGTCAGGACTAGTTAACCAT+TGG | + | chr4_4:59701428-59701447 | Msa0691550:intron | 40.0% |
| TAATCGTACTAGCTGATGGA+TGG | - | chr4_4:59701721-59701740 | None:intergenic | 40.0% | |
| TCACTAGGTCATACTTTCGA+AGG | + | chr4_4:59701970-59701989 | Msa0691550:CDS | 40.0% | |
| AGCAGTCCTTTAAATAGCTC+AGG | + | chr4_4:59702012-59702031 | Msa0691550:CDS | 40.0% | |
| TCCTTTAAATAGCTCAGGCA+TGG | + | chr4_4:59702017-59702036 | Msa0691550:CDS | 40.0% | |
| TTTGGCAAAAAGTGAGGATG+AGG | + | chr4_4:59702386-59702405 | Msa0691550:CDS | 40.0% | |
| TTGGCAAAAAGTGAGGATGA+GGG | + | chr4_4:59702387-59702406 | Msa0691550:CDS | 40.0% | |
| AAAGACACTGGGAAAAGAAG+TGG | + | chr4_4:59702479-59702498 | Msa0691550:CDS | 40.0% | |
| AAGACACTGGGAAAAGAAGT+GGG | + | chr4_4:59702480-59702499 | Msa0691550:CDS | 40.0% | |
| ! | ACTAACCTGAAGCATTCCAA+GGG | - | chr4_4:59702542-59702561 | None:intergenic | 40.0% |
| ! | TACTAACCTGAAGCATTCCA+AGG | - | chr4_4:59702543-59702562 | None:intergenic | 40.0% |
| TTCTTGAGCGTGAAACTGTT+AGG | + | chr4_4:59702786-59702805 | Msa0691550:CDS | 40.0% | |
| TCTTGAGCGTGAAACTGTTA+GGG | + | chr4_4:59702787-59702806 | Msa0691550:CDS | 40.0% | |
| AGATCCATCCCTGATTATTG+TGG | + | chr4_4:59702866-59702885 | Msa0691550:CDS | 40.0% | |
| GATCCATCCCTGATTATTGT+GGG | + | chr4_4:59702867-59702886 | Msa0691550:CDS | 40.0% | |
| CAACATAATCAACAGGCTGT+GGG | - | chr4_4:59702964-59702983 | None:intergenic | 40.0% | |
| TCAACATAATCAACAGGCTG+TGG | - | chr4_4:59702965-59702984 | None:intergenic | 40.0% | |
| ! | AGCCTGTTGATTATGTTGAG+TGG | + | chr4_4:59702966-59702985 | Msa0691550:CDS | 40.0% |
| TGCCACTCAACATAATCAAC+AGG | - | chr4_4:59702971-59702990 | None:intergenic | 40.0% | |
| ! | TTTCTGGTAAGCAACCTTCA+TGG | - | chr4_4:59703018-59703037 | None:intergenic | 40.0% |
| GTCTGTATAATGCACAACCA+TGG | - | chr4_4:59703078-59703097 | None:intergenic | 40.0% | |
| !! | AATATTCTGAGACTTGGCCT+CGG | - | chr4_4:59703242-59703261 | None:intergenic | 40.0% |
| TGACTGATTATTGTGGTGGT+AGG | + | chr4_4:59703389-59703408 | Msa0691550:three_prime_UTR | 40.0% | |
| AGAATATACCTTGAGGCGGT+TGG | - | chr4_4:59699934-59699953 | None:intergenic | 45.0% | |
| ! | CACTGTCATTTAACGAGTCC+GGG | - | chr4_4:59700091-59700110 | None:intergenic | 45.0% |
| ! | CCACTGTCATTTAACGAGTC+CGG | - | chr4_4:59700092-59700111 | None:intergenic | 45.0% |
| GTGTCTCTCCTTCTCTTTCA+TGG | - | chr4_4:59700252-59700271 | None:intergenic | 45.0% | |
| GAAAGAGAAGGAGAGACACA+TGG | + | chr4_4:59700253-59700272 | Msa0691550:CDS | 45.0% | |
| ATTCTATAGGATGGGAGCCT+TGG | + | chr4_4:59700523-59700542 | Msa0691550:intron | 45.0% | |
| TTCTATAGGATGGGAGCCTT+GGG | + | chr4_4:59700524-59700543 | Msa0691550:intron | 45.0% | |
| GAATTAGCCCAACTGTTGCA+AGG | + | chr4_4:59700559-59700578 | Msa0691550:CDS | 45.0% | |
| CCTCAAATCCTTGCAACAGT+TGG | - | chr4_4:59700570-59700589 | None:intergenic | 45.0% | |
| CCAACTGTTGCAAGGATTTG+AGG | + | chr4_4:59700567-59700586 | Msa0691550:CDS | 45.0% | |
| AGGTTTAGTCAGAGGACTGA+TGG | - | chr4_4:59700605-59700624 | None:intergenic | 45.0% | |
| ATCAGTCCTCTGACTAAACC+TGG | + | chr4_4:59700604-59700623 | Msa0691550:CDS | 45.0% | |
| TCAGTCCTCTGACTAAACCT+GGG | + | chr4_4:59700605-59700624 | Msa0691550:CDS | 45.0% | |
| GTGGAGTGATAAGAAGGTTG+AGG | - | chr4_4:59700801-59700820 | None:intergenic | 45.0% | |
| ! | TACACTTTGGGAATTGGGTG+GGG | - | chr4_4:59701263-59701282 | None:intergenic | 45.0% |
| ! | GATACACTTTGGGAATTGGG+TGG | - | chr4_4:59701265-59701284 | None:intergenic | 45.0% |
| GAGCTCGAGTGATACACTTT+GGG | - | chr4_4:59701275-59701294 | None:intergenic | 45.0% | |
| AGAGCTCGAGTGATACACTT+TGG | - | chr4_4:59701276-59701295 | None:intergenic | 45.0% | |
| AAAGTGTATCACTCGAGCTC+TGG | + | chr4_4:59701275-59701294 | Msa0691550:intron | 45.0% | |
| GGAACAACTAACCACTCAAG+TGG | - | chr4_4:59701496-59701515 | None:intergenic | 45.0% | |
| ! | CGAAAGTATGACCTAGTGAC+TGG | - | chr4_4:59701969-59701988 | None:intergenic | 45.0% |
| GCCATGCCTGAGCTATTTAA+AGG | - | chr4_4:59702021-59702040 | None:intergenic | 45.0% | |
| GATATGGATCACAACGCTGT+AGG | + | chr4_4:59702075-59702094 | Msa0691550:CDS | 45.0% | |
| ! | AGTCCCACAGTGCACATTTT+GGG | - | chr4_4:59702305-59702324 | None:intergenic | 45.0% |
| ! | CGAGCTTTTGGCAAAAAGTG+AGG | + | chr4_4:59702380-59702399 | Msa0691550:CDS | 45.0% |
| ! | AAGACTCCAATTTTGCGACC+CGG | + | chr4_4:59702411-59702430 | Msa0691550:CDS | 45.0% |
| TCTTTCACATCAATGCCACC+GGG | - | chr4_4:59702432-59702451 | None:intergenic | 45.0% | |
| GTCTTTCACATCAATGCCAC+CGG | - | chr4_4:59702433-59702452 | None:intergenic | 45.0% | |
| !! | GGTGGCATTGATGTGAAAGA+CGG | + | chr4_4:59702432-59702451 | Msa0691550:CDS | 45.0% |
| GCAAGAACAGCAGCAAACAA+AGG | - | chr4_4:59702459-59702478 | None:intergenic | 45.0% | |
| TGCTGTTCTTGCAAAGACAC+TGG | + | chr4_4:59702467-59702486 | Msa0691550:CDS | 45.0% | |
| GCTGTTCTTGCAAAGACACT+GGG | + | chr4_4:59702468-59702487 | Msa0691550:CDS | 45.0% | |
| ! | CTAACCTGAAGCATTCCAAG+GGG | - | chr4_4:59702541-59702560 | None:intergenic | 45.0% |
| TGTTCTTTGACCAGCCTAGA+AGG | + | chr4_4:59702816-59702835 | Msa0691550:CDS | 45.0% | |
| GTTCTTTGACCAGCCTAGAA+GGG | + | chr4_4:59702817-59702836 | Msa0691550:CDS | 45.0% | |
| AACCACGCCCACAATAATCA+GGG | - | chr4_4:59702877-59702896 | None:intergenic | 45.0% | |
| TTGGCATGAATCAAGGAAGC+AGG | + | chr4_4:59702895-59702914 | Msa0691550:CDS | 45.0% | |
| ATCAAGGAAGCAGGTGATGA+AGG | + | chr4_4:59702904-59702923 | Msa0691550:CDS | 45.0% | |
| AAGCAGGTGATGAAGGAACA+TGG | + | chr4_4:59702911-59702930 | Msa0691550:CDS | 45.0% | |
| AGCAGGTGATGAAGGAACAT+GGG | + | chr4_4:59702912-59702931 | Msa0691550:CDS | 45.0% | |
| ! | GATTTTCCATCATCTGGCGA+CGG | - | chr4_4:59703205-59703224 | None:intergenic | 45.0% |
| ATCTGTCAAGGGAAAAACCG+AGG | + | chr4_4:59703222-59703241 | Msa0691550:CDS | 45.0% | |
| GAGGCCAAGTCTCAGAATAT+TGG | + | chr4_4:59703241-59703260 | Msa0691550:CDS | 45.0% | |
| !! | CAGGCCAATATTCTGAGACT+TGG | - | chr4_4:59703248-59703267 | None:intergenic | 45.0% |
| ! | CAAGTTGACGACCAGTCATT+TGG | - | chr4_4:59703309-59703328 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTTTTTTTTGA+AGG | + | chr4_4:59700169-59700188 | Msa0691550:intron | 5.0% |
| !! | ATATATATATATATATATAG+GGG | - | chr4_4:59700865-59700884 | None:intergenic | 5.0% |
| !! | ATATATATATATATATATGT+CGG | + | chr4_4:59700907-59700926 | Msa0691550:intron | 5.0% |
| TTCAAACAAATCGCCGCCGA+GGG | + | chr4_4:59699876-59699895 | Msa0691550:CDS | 50.0% | |
| TGGAATGAGAACCCTACCCT+CGG | - | chr4_4:59699895-59699914 | None:intergenic | 50.0% | |
| ATATACCTTGAGGCGGTTGG+AGG | - | chr4_4:59699931-59699950 | None:intergenic | 50.0% | |
| CCGGACTCGTTAAATGACAG+TGG | + | chr4_4:59700089-59700108 | Msa0691550:intron | 50.0% | |
| TGCATCAGTTGCTTCGAGAG+TGG | + | chr4_4:59700363-59700382 | Msa0691550:CDS | 50.0% | |
| TCAGTTGCTTCGAGAGTGGA+AGG | + | chr4_4:59700367-59700386 | Msa0691550:CDS | 50.0% | |
| AACAGTTGGGCTAATTCCCC+GGG | - | chr4_4:59700556-59700575 | None:intergenic | 50.0% | |
| CAACAGTTGGGCTAATTCCC+CGG | - | chr4_4:59700557-59700576 | None:intergenic | 50.0% | |
| AACAGCCCAGGTTTAGTCAG+AGG | - | chr4_4:59700613-59700632 | None:intergenic | 50.0% | |
| TAGGGGTTATACGGATGGCT+TGG | - | chr4_4:59700848-59700867 | None:intergenic | 50.0% | |
| AAGACCGCACACCACATGAT+AGG | - | chr4_4:59701170-59701189 | None:intergenic | 50.0% | |
| TTGGGAATTGGGTGGGGTTA+TGG | - | chr4_4:59701257-59701276 | None:intergenic | 50.0% | |
| CACAACTCTCTGAGCACCAA+TGG | - | chr4_4:59701447-59701466 | None:intergenic | 50.0% | |
| ! | CTGATGGATGGCTAGCTATG+GGG | - | chr4_4:59701709-59701728 | None:intergenic | 50.0% |
| ! | GCTGATGGATGGCTAGCTAT+GGG | - | chr4_4:59701710-59701729 | None:intergenic | 50.0% |
| ! | AGCTGATGGATGGCTAGCTA+TGG | - | chr4_4:59701711-59701730 | None:intergenic | 50.0% |
| TTACTTCTGCGTTGTACCCG+AGG | - | chr4_4:59702134-59702153 | None:intergenic | 50.0% | |
| CTAGGAAAGCAGAAGGTGGA+GGG | - | chr4_4:59702281-59702300 | None:intergenic | 50.0% | |
| ! | TTTGGGGCTAGGAAAGCAGA+AGG | - | chr4_4:59702288-59702307 | None:intergenic | 50.0% |
| !!! | ACAGTGCACATTTTGGGGCT+AGG | - | chr4_4:59702299-59702318 | None:intergenic | 50.0% |
| TAGCCCCAAAATGTGCACTG+TGG | + | chr4_4:59702298-59702317 | Msa0691550:CDS | 50.0% | |
| AGCCCCAAAATGTGCACTGT+GGG | + | chr4_4:59702299-59702318 | Msa0691550:CDS | 50.0% | |
| ! | GTCCCACAGTGCACATTTTG+GGG | - | chr4_4:59702304-59702323 | None:intergenic | 50.0% |
| ! | CAGTCCCACAGTGCACATTT+TGG | - | chr4_4:59702306-59702325 | None:intergenic | 50.0% |
| ACTGTTTCAGGCCTGCTCAA+GGG | + | chr4_4:59702322-59702341 | Msa0691550:CDS | 50.0% | |
| AAGCAGCACCTTCACACTTG+GGG | - | chr4_4:59702509-59702528 | None:intergenic | 50.0% | |
| GAAGCAGCACCTTCACACTT+GGG | - | chr4_4:59702510-59702529 | None:intergenic | 50.0% | |
| TGAAGCAGCACCTTCACACT+TGG | - | chr4_4:59702511-59702530 | None:intergenic | 50.0% | |
| AAAGCCCCTTGGAATGCTTC+AGG | + | chr4_4:59702534-59702553 | Msa0691550:CDS | 50.0% | |
| AGCGTGAAACTGTTAGGGAG+TGG | + | chr4_4:59702792-59702811 | Msa0691550:CDS | 50.0% | |
| AGTCAAATGCCCTTCTAGGC+TGG | - | chr4_4:59702829-59702848 | None:intergenic | 50.0% | |
| CCAGAGTCAAATGCCCTTCT+AGG | - | chr4_4:59702833-59702852 | None:intergenic | 50.0% | |
| !! | CCTAGAAGGGCATTTGACTC+TGG | + | chr4_4:59702830-59702849 | Msa0691550:CDS | 50.0% |
| !! | GGGCATTTGACTCTGGAACT+AGG | + | chr4_4:59702837-59702856 | Msa0691550:CDS | 50.0% |
| ACGCCCACAATAATCAGGGA+TGG | - | chr4_4:59702873-59702892 | None:intergenic | 50.0% | |
| ATCCCTGATTATTGTGGGCG+TGG | + | chr4_4:59702872-59702891 | Msa0691550:CDS | 50.0% | |
| CAACCACGCCCACAATAATC+AGG | - | chr4_4:59702878-59702897 | None:intergenic | 50.0% | |
| CTGATTATTGTGGGCGTGGT+TGG | + | chr4_4:59702876-59702895 | Msa0691550:CDS | 50.0% | |
| GCAGGTGATGAAGGAACATG+GGG | + | chr4_4:59702913-59702932 | Msa0691550:CDS | 50.0% | |
| CAGGTGATGAAGGAACATGG+GGG | + | chr4_4:59702914-59702933 | Msa0691550:CDS | 50.0% | |
| TCAGGATGGGGTTCAGATTG+TGG | + | chr4_4:59703337-59703356 | Msa0691550:three_prime_UTR | 50.0% | |
| CTTCAAACAAATCGCCGCCG+AGG | + | chr4_4:59699875-59699894 | Msa0691550:CDS | 55.0% | |
| AATGAGAACCCTACCCTCGG+CGG | - | chr4_4:59699892-59699911 | None:intergenic | 55.0% | |
| GGGTAGGGTTCTCATTCCAC+CGG | + | chr4_4:59699896-59699915 | Msa0691550:CDS | 55.0% | |
| TTGGAGGAAGGTTGTTCCGG+TGG | - | chr4_4:59699915-59699934 | None:intergenic | 55.0% | |
| CGGTTGGAGGAAGGTTGTTC+CGG | - | chr4_4:59699918-59699937 | None:intergenic | 55.0% | |
| !! | ATACGGATGGCTTGGTGGCT+GGG | - | chr4_4:59700840-59700859 | None:intergenic | 55.0% |
| !! | TATACGGATGGCTTGGTGGC+TGG | - | chr4_4:59700841-59700860 | None:intergenic | 55.0% |
| ! | GGGTTATACGGATGGCTTGG+TGG | - | chr4_4:59700845-59700864 | None:intergenic | 55.0% |
| TAGCTCAGGCATGGCTCAGT+TGG | + | chr4_4:59702026-59702045 | Msa0691550:CDS | 55.0% | |
| ATTTGTCGGGACCACAGCCT+CGG | + | chr4_4:59702114-59702133 | Msa0691550:CDS | 55.0% | |
| GAAGGTGGAGGGCGGATATT+TGG | - | chr4_4:59702270-59702289 | None:intergenic | 55.0% | |
| GCTAGGAAAGCAGAAGGTGG+AGG | - | chr4_4:59702282-59702301 | None:intergenic | 55.0% | |
| GTGCACTGTGGGACTGTTTC+AGG | + | chr4_4:59702310-59702329 | Msa0691550:CDS | 55.0% | |
| GACTGTTTCAGGCCTGCTCA+AGG | + | chr4_4:59702321-59702340 | Msa0691550:CDS | 55.0% | |
| CACTGCTCTAACCCTTGAGC+AGG | - | chr4_4:59702336-59702355 | None:intergenic | 55.0% | |
| TCAAGGGTTAGAGCAGTGCC+AGG | + | chr4_4:59702338-59702357 | Msa0691550:CDS | 55.0% | |
| ! | ACTCCAATTTTGCGACCCGG+TGG | + | chr4_4:59702414-59702433 | Msa0691550:CDS | 55.0% |
| ATGCCACCGGGTCGCAAAAT+TGG | - | chr4_4:59702420-59702439 | None:intergenic | 55.0% | |
| CTGCTTCAACGAAAGCCCCT+TGG | + | chr4_4:59702523-59702542 | Msa0691550:CDS | 55.0% | |
| GGCGTGGTTGGCATGAATCA+AGG | + | chr4_4:59702888-59702907 | Msa0691550:CDS | 55.0% | |
| AACAAATCGCCGCCGAGGGT+AGG | + | chr4_4:59699880-59699899 | Msa0691550:CDS | 60.0% | |
| ACAAATCGCCGCCGAGGGTA+GGG | + | chr4_4:59699881-59699900 | Msa0691550:CDS | 60.0% | |
| ACCTTCCTCCAACCGCCTCA+AGG | + | chr4_4:59699923-59699942 | Msa0691550:CDS | 60.0% | |
| ACCTTGAGGCGGTTGGAGGA+AGG | - | chr4_4:59699927-59699946 | None:intergenic | 60.0% | |
| ATTCCCCGGGAAACGACCCA+AGG | - | chr4_4:59700543-59700562 | None:intergenic | 60.0% | |
| !! | TACGGATGGCTTGGTGGCTG+GGG | - | chr4_4:59700839-59700858 | None:intergenic | 60.0% |
| TTTGTCGGGACCACAGCCTC+GGG | + | chr4_4:59702115-59702134 | Msa0691550:CDS | 60.0% | |
| GGAAAGCAGAAGGTGGAGGG+CGG | - | chr4_4:59702278-59702297 | None:intergenic | 60.0% | |
| GGGGCTAGGAAAGCAGAAGG+TGG | - | chr4_4:59702285-59702304 | None:intergenic | 60.0% | |
| GTGGGCATCCCCAAGTGTGA+AGG | + | chr4_4:59702498-59702517 | Msa0691550:CDS | 60.0% | |
| GGGAGCCTTGGGTCGTTTCC+CGG | + | chr4_4:59700535-59700554 | Msa0691550:CDS | 65.0% | |
| GGAGCCTTGGGTCGTTTCCC+GGG | + | chr4_4:59700536-59700555 | Msa0691550:CDS | 65.0% | |
| GAGCCTTGGGTCGTTTCCCG+GGG | + | chr4_4:59700537-59700556 | Msa0691550:CDS | 65.0% | |
| GGGGTGGGGGAGTTAAGGAG+TGG | - | chr4_4:59700820-59700839 | None:intergenic | 65.0% | |
| TGGCTGGGGTGGGGGAGTTA+AGG | - | chr4_4:59700825-59700844 | None:intergenic | 65.0% | |
| !! | ATGGCTTGGTGGCTGGGGTG+GGG | - | chr4_4:59700834-59700853 | None:intergenic | 65.0% |
| !! | GATGGCTTGGTGGCTGGGGT+GGG | - | chr4_4:59700835-59700854 | None:intergenic | 65.0% |
| CTGCGTTGTACCCGAGGCTG+TGG | - | chr4_4:59702128-59702147 | None:intergenic | 65.0% | |
| GCTGCTCCGTCGCCAGATGA+TGG | + | chr4_4:59703196-59703215 | Msa0691550:CDS | 65.0% | |
| !! | TGGCTTGGTGGCTGGGGTGG+GGG | - | chr4_4:59700833-59700852 | None:intergenic | 70.0% |
| !! | GGATGGCTTGGTGGCTGGGG+TGG | - | chr4_4:59700836-59700855 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 59699813 | 59703554 | 59699813 | ID=Msa0691550;Name=Msa0691550 |
| chr4_4 | mRNA | 59699813 | 59703554 | 59699813 | ID=Msa0691550-mRNA-1;Parent=Msa0691550;Name=Msa0691550-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.8|1|1|0.8|5|275|546 |
| chr4_4 | exon | 59699813 | 59699944 | 59699813 | ID=Msa0691550-mRNA-1:exon:16276;Parent=Msa0691550-mRNA-1 |
| chr4_4 | exon | 59700191 | 59700421 | 59700191 | ID=Msa0691550-mRNA-1:exon:16277;Parent=Msa0691550-mRNA-1 |
| chr4_4 | exon | 59700532 | 59700690 | 59700532 | ID=Msa0691550-mRNA-1:exon:16278;Parent=Msa0691550-mRNA-1 |
| chr4_4 | exon | 59701949 | 59702555 | 59701949 | ID=Msa0691550-mRNA-1:exon:16279;Parent=Msa0691550-mRNA-1 |
| chr4_4 | exon | 59702768 | 59703554 | 59702768 | ID=Msa0691550-mRNA-1:exon:16280;Parent=Msa0691550-mRNA-1 |
| chr4_4 | CDS | 59699813 | 59699944 | 59699813 | ID=Msa0691550-mRNA-1:cds;Parent=Msa0691550-mRNA-1 |
| chr4_4 | CDS | 59700191 | 59700421 | 59700191 | ID=Msa0691550-mRNA-1:cds;Parent=Msa0691550-mRNA-1 |
| chr4_4 | CDS | 59700532 | 59700690 | 59700532 | ID=Msa0691550-mRNA-1:cds;Parent=Msa0691550-mRNA-1 |
| chr4_4 | CDS | 59701949 | 59702555 | 59701949 | ID=Msa0691550-mRNA-1:cds;Parent=Msa0691550-mRNA-1 |
| chr4_4 | CDS | 59702768 | 59703279 | 59702768 | ID=Msa0691550-mRNA-1:cds;Parent=Msa0691550-mRNA-1 |
| chr4_4 | three_prime_UTR | 59703280 | 59703554 | 59703280 | ID=Msa0691550-mRNA-1:three_prime_utr;Parent=Msa0691550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
