Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692270 | AES89938.1 | 88.645 | 273 | 31 | 0 | 1 | 273 | 1 | 273 | 2.10e-166 | 471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692270 | sp|Q9FXA3|BH095_ARATH | 32.000 | 250 | 112 | 5 | 76 | 267 | 52 | 301 | 1.74e-26 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692270 | G7JG89 | 88.645 | 273 | 31 | 0 | 1 | 273 | 1 | 273 | 1.00e-166 | 471 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0692270 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692270 | MtrunA17_Chr4g0042511 | 87.654 | 243 | 30 | 0 | 1 | 243 | 1 | 243 | 5.46e-147 | 412 |
| Msa0692270 | MtrunA17_Chr4g0044621 | 45.130 | 308 | 120 | 9 | 1 | 267 | 1 | 300 | 4.59e-58 | 187 |
| Msa0692270 | MtrunA17_Chr4g0044611 | 45.878 | 279 | 114 | 8 | 1 | 243 | 1 | 278 | 5.83e-56 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692270 | AT1G49770.1 | 32.000 | 250 | 112 | 5 | 76 | 267 | 52 | 301 | 1.77e-27 | 108 |
Find 41 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCCACTGAAATTGCATTT+TGG | 0.191221 | 4_4:-60693755 | None:intergenic |
| TGACTTTAGATGATGATAAA+TGG | 0.249362 | 4_4:+60691377 | Msa0692270:CDS |
| ACTTCAAATGCACTAGCTTT+TGG | 0.254586 | 4_4:+60692606 | Msa0692270:CDS |
| AGCTAGCAGCAGGAGAAATT+AGG | 0.262683 | 4_4:+60693787 | Msa0692270:CDS |
| TTCATCTCCGCAAATGTTAA+AGG | 0.277405 | 4_4:-60692655 | None:intergenic |
| AATGGTTCTTTGTTCTCATT+TGG | 0.286563 | 4_4:-60691457 | None:intergenic |
| GCTAGCAGCAGGAGAAATTA+GGG | 0.304341 | 4_4:+60693788 | Msa0692270:CDS |
| CTCATTGATTCAATGTCTAA+TGG | 0.319505 | 4_4:-60691475 | None:intergenic |
| AACATCTTGTCCAATGATAA+TGG | 0.323511 | 4_4:+60692771 | Msa0692270:CDS |
| GTAGCTGTTTCCATTATCAT+TGG | 0.365138 | 4_4:-60692781 | None:intergenic |
| CACATTGCTTCTTATTCACT+AGG | 0.390758 | 4_4:-60691525 | None:intergenic |
| ATTTGAAACTTACATGGGCT+TGG | 0.392532 | 4_4:-60692809 | None:intergenic |
| AAAATTGTTGTCAACAAGCT+TGG | 0.434592 | 4_4:-60692708 | None:intergenic |
| AATGTTACCTTTAACATTTG+CGG | 0.450475 | 4_4:+60692648 | Msa0692270:CDS |
| GATTCCTCATCTTACTTACA+AGG | 0.453723 | 4_4:+60691702 | Msa0692270:CDS |
| ATTTGGTTTATCAGAAATGA+AGG | 0.457704 | 4_4:-60691440 | None:intergenic |
| AAAACAAACTCTAGAAAAGC+TGG | 0.462688 | 4_4:+60692497 | Msa0692270:CDS |
| AATGAGCCAAAATGTAGAAA+AGG | 0.465109 | 4_4:+60691492 | Msa0692270:CDS |
| GATAAGGGAAAAGATAGAAA+TGG | 0.474599 | 4_4:+60691592 | Msa0692270:CDS |
| ATGTGTGAAAATCAATCATC+GGG | 0.496092 | 4_4:+60691415 | Msa0692270:CDS |
| TAAGAAGCAATGTGAGGGAG+GGG | 0.496799 | 4_4:+60691534 | Msa0692270:CDS |
| ATGCACTTGCTGAGAGAGAA+AGG | 0.498912 | 4_4:+60691638 | Msa0692270:CDS |
| ATTATCATTGGACAAGATGT+TGG | 0.503413 | 4_4:-60692769 | None:intergenic |
| GAAAGTTACAAGCTAGCAGC+AGG | 0.519236 | 4_4:+60693777 | Msa0692270:CDS |
| AATAAGAAGCAATGTGAGGG+AGG | 0.525488 | 4_4:+60691532 | Msa0692270:CDS |
| ACATTGCTTCTTATTCACTA+GGG | 0.529713 | 4_4:-60691524 | None:intergenic |
| TTTGGTTTATCAGAAATGAA+GGG | 0.532763 | 4_4:-60691439 | None:intergenic |
| CATGTGTGAAAATCAATCAT+CGG | 0.538236 | 4_4:+60691414 | Msa0692270:CDS |
| TTTATCATCATCTAAAGTCA+TGG | 0.573233 | 4_4:-60691374 | None:intergenic |
| ATAAGAAGCAATGTGAGGGA+GGG | 0.586200 | 4_4:+60691533 | Msa0692270:CDS |
| TTGGTTTATCAGAAATGAAG+GGG | 0.597449 | 4_4:-60691438 | None:intergenic |
| TTTACCTTGTAAGTAAGATG+AGG | 0.598129 | 4_4:-60691706 | None:intergenic |
| CTTCACTGCTTCCTCCACAA+TGG | 0.599469 | 4_4:-60692460 | None:intergenic |
| GTGAATAAGAAGCAATGTGA+GGG | 0.611245 | 4_4:+60691529 | Msa0692270:CDS |
| CCAAAATGCAATTTCAGTGG+AGG | 0.613831 | 4_4:+60693755 | Msa0692270:CDS |
| AAGCCAAAATGCAATTTCAG+TGG | 0.614102 | 4_4:+60693752 | Msa0692270:CDS |
| GGTAGATTCTGTAACCATTG+TGG | 0.628284 | 4_4:+60692446 | Msa0692270:intron |
| CTAGCAGCAGGAGAAATTAG+GGG | 0.636230 | 4_4:+60693789 | Msa0692270:CDS |
| AGATTCTGTAACCATTGTGG+AGG | 0.646571 | 4_4:+60692449 | Msa0692270:CDS |
| AGTGAATAAGAAGCAATGTG+AGG | 0.680971 | 4_4:+60691528 | Msa0692270:CDS |
| CACTTGCTGAGAGAGAAAGG+AGG | 0.730053 | 4_4:+60691641 | Msa0692270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAATGTTAAAAATGATA+AGG | + | chr4_4:60691576-60691595 | Msa0692270:CDS | 10.0% |
| !! | TTAAATGTTAAAAATGATAA+GGG | + | chr4_4:60691577-60691596 | Msa0692270:CDS | 10.0% |
| !!! | TTTATTTCTAATCAATTTAT+CGG | + | chr4_4:60691998-60692017 | Msa0692270:intron | 10.0% |
| !! | ACAAAAAAAAAAAAAAAAGT+TGG | - | chr4_4:60693515-60693534 | None:intergenic | 10.0% |
| !!! | ATTACATTCATTTTTAAGAT+TGG | + | chr4_4:60691732-60691751 | Msa0692270:intron | 15.0% |
| !!! | ACAAAATTTTCATTGAAAAA+TGG | - | chr4_4:60691777-60691796 | None:intergenic | 15.0% |
| !! | TCAAAAAATATATATCTGAA+AGG | - | chr4_4:60691867-60691886 | None:intergenic | 15.0% |
| !! | TGATTAGAAATAAAAAAAGT+TGG | - | chr4_4:60691992-60692011 | None:intergenic | 15.0% |
| !!! | ACCTTAGTAATTTAAAATTT+AGG | - | chr4_4:60692195-60692214 | None:intergenic | 15.0% |
| !! | TTATATGAAAAGAGATTAAT+CGG | - | chr4_4:60692315-60692334 | None:intergenic | 15.0% |
| !!! | TGCTTTGTTTTAAAAAATTT+TGG | + | chr4_4:60692421-60692440 | Msa0692270:intron | 15.0% |
| !!! | ATTGAGTTTTTCATTTTTTT+TGG | - | chr4_4:60693617-60693636 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTTCTTTGTACTA+TGG | + | chr4_4:60691956-60691975 | Msa0692270:intron | 20.0% |
| !! | GCTTTAACTAAATTCAAATA+TGG | + | chr4_4:60692130-60692149 | Msa0692270:intron | 20.0% |
| !!! | TAGTAATTTAAAATTTAGGC+CGG | - | chr4_4:60692191-60692210 | None:intergenic | 20.0% |
| !!! | GCCTAAATTTTAAATTACTA+AGG | + | chr4_4:60692191-60692210 | Msa0692270:intron | 20.0% |
| !! | TTAATACAACAAAAAAAGGT+CGG | + | chr4_4:60692239-60692258 | Msa0692270:intron | 20.0% |
| !!! | TTGTTTTAAAAAATTTTGGC+AGG | + | chr4_4:60692425-60692444 | Msa0692270:intron | 20.0% |
| !!! | ATTGAATTTGAAACTTACAT+GGG | - | chr4_4:60692817-60692836 | None:intergenic | 20.0% |
| !!! | AATTGAATTTGAAACTTACA+TGG | - | chr4_4:60692818-60692837 | None:intergenic | 20.0% |
| !! | CAGATTTAAACTTTGAATAA+TGG | - | chr4_4:60692971-60692990 | None:intergenic | 20.0% |
| !!! | ATAAACTTTAGGTTTGTTTA+CGG | - | chr4_4:60693443-60693462 | None:intergenic | 20.0% |
| !! | TTTATCATCATCTAAAGTCA+TGG | - | chr4_4:60691377-60691396 | None:intergenic | 25.0% |
| ! | TGACTTTAGATGATGATAAA+TGG | + | chr4_4:60691377-60691396 | Msa0692270:CDS | 25.0% |
| !! | TTTGGTTTATCAGAAATGAA+GGG | - | chr4_4:60691442-60691461 | None:intergenic | 25.0% |
| !! | ATTTGGTTTATCAGAAATGA+AGG | - | chr4_4:60691443-60691462 | None:intergenic | 25.0% |
| !! | ATCAAAATTGAATCGATTCA+TGG | - | chr4_4:60692099-60692118 | None:intergenic | 25.0% |
| !!! | ATGAATCGATTCAATTTTGA+TGG | + | chr4_4:60692098-60692117 | Msa0692270:intron | 25.0% |
| !!! | AAAATAATTTTGACTACCTC+CGG | + | chr4_4:60692169-60692188 | Msa0692270:intron | 25.0% |
| !!! | TTTTTGTTGTATTAATCCGT+TGG | - | chr4_4:60692234-60692253 | None:intergenic | 25.0% |
| ! | CGGATTAATACAACAAAAAA+AGG | + | chr4_4:60692235-60692254 | Msa0692270:intron | 25.0% |
| ! | TAATACAACAAAAAAAGGTC+GGG | + | chr4_4:60692240-60692259 | Msa0692270:intron | 25.0% |
| ! | AGATTAATCGGTAAGAAATA+GGG | - | chr4_4:60692303-60692322 | None:intergenic | 25.0% |
| ! | ATTAAATCAATGTTACACCT+AGG | - | chr4_4:60692393-60692412 | None:intergenic | 25.0% |
| ! | AATGTTACCTTTAACATTTG+CGG | + | chr4_4:60692648-60692667 | Msa0692270:CDS | 25.0% |
| !! | CATTTCTTTTGACAAAAAAG+AGG | + | chr4_4:60693082-60693101 | Msa0692270:intron | 25.0% |
| !! | CATGGATCTTTATTTAAGAA+AGG | + | chr4_4:60693272-60693291 | Msa0692270:intron | 25.0% |
| !!! | TGTCATGAAAAGTTTTATTG+CGG | + | chr4_4:60693299-60693318 | Msa0692270:intron | 25.0% |
| !! | TAAACTTTAGGTTTGTTTAC+GGG | - | chr4_4:60693442-60693461 | None:intergenic | 25.0% |
| !! | TTAGCAAAATACTTTTCTTC+TGG | - | chr4_4:60693480-60693499 | None:intergenic | 25.0% |
| ! | TTATTTCATTATCCACAATG+TGG | + | chr4_4:60693672-60693691 | Msa0692270:intron | 25.0% |
| CATGTGTGAAAATCAATCAT+CGG | + | chr4_4:60691414-60691433 | Msa0692270:CDS | 30.0% | |
| ATGTGTGAAAATCAATCATC+GGG | + | chr4_4:60691415-60691434 | Msa0692270:CDS | 30.0% | |
| TTGGTTTATCAGAAATGAAG+GGG | - | chr4_4:60691441-60691460 | None:intergenic | 30.0% | |
| AATGGTTCTTTGTTCTCATT+TGG | - | chr4_4:60691460-60691479 | None:intergenic | 30.0% | |
| !! | CTCATTGATTCAATGTCTAA+TGG | - | chr4_4:60691478-60691497 | None:intergenic | 30.0% |
| AATGAGCCAAAATGTAGAAA+AGG | + | chr4_4:60691492-60691511 | Msa0692270:CDS | 30.0% | |
| ! | CTTCTTCCTTTTCTACATTT+TGG | - | chr4_4:60691501-60691520 | None:intergenic | 30.0% |
| ACATTGCTTCTTATTCACTA+GGG | - | chr4_4:60691527-60691546 | None:intergenic | 30.0% | |
| GATAAGGGAAAAGATAGAAA+TGG | + | chr4_4:60691592-60691611 | Msa0692270:CDS | 30.0% | |
| TTTACCTTGTAAGTAAGATG+AGG | - | chr4_4:60691709-60691728 | None:intergenic | 30.0% | |
| ! | AGTGACATGCAAATTTTTCT+TGG | - | chr4_4:60692037-60692056 | None:intergenic | 30.0% |
| ! | AAAATTGAATCGATTCATGG+AGG | - | chr4_4:60692096-60692115 | None:intergenic | 30.0% |
| ! | CAAATATGGACTTTTCTCAA+TGG | + | chr4_4:60692144-60692163 | Msa0692270:intron | 30.0% |
| ! | TAATTTAAAATTTAGGCCGG+AGG | - | chr4_4:60692188-60692207 | None:intergenic | 30.0% |
| GATTAATCGGTAAGAAATAG+GGG | - | chr4_4:60692302-60692321 | None:intergenic | 30.0% | |
| GAGATTAATCGGTAAGAAAT+AGG | - | chr4_4:60692304-60692323 | None:intergenic | 30.0% | |
| ATGTATATATAGCAACACCT+AGG | + | chr4_4:60692373-60692392 | Msa0692270:intron | 30.0% | |
| ! | AAAACAAACTCTAGAAAAGC+TGG | + | chr4_4:60692497-60692516 | Msa0692270:CDS | 30.0% |
| !!! | TTTTAGTTTGAACTCGAAGA+TGG | + | chr4_4:60692581-60692600 | Msa0692270:CDS | 30.0% |
| AAAATTGTTGTCAACAAGCT+TGG | - | chr4_4:60692711-60692730 | None:intergenic | 30.0% | |
| ! | GACAACAATTTTTCATGTGA+TGG | + | chr4_4:60692719-60692738 | Msa0692270:CDS | 30.0% |
| ATTATCATTGGACAAGATGT+TGG | - | chr4_4:60692772-60692791 | None:intergenic | 30.0% | |
| AACATCTTGTCCAATGATAA+TGG | + | chr4_4:60692771-60692790 | Msa0692270:CDS | 30.0% | |
| CTAGTACTTGTAGAGTAATT+TGG | + | chr4_4:60692874-60692893 | Msa0692270:intron | 30.0% | |
| TCTTACATACTCTCTTCTAT+TGG | - | chr4_4:60692921-60692940 | None:intergenic | 30.0% | |
| !! | AGAACTTTTGTGATTTGTGT+CGG | + | chr4_4:60693115-60693134 | Msa0692270:intron | 30.0% |
| TGTGCTCAAAATTAGTGTTT+AGG | + | chr4_4:60693146-60693165 | Msa0692270:intron | 30.0% | |
| GTGCTCAAAATTAGTGTTTA+GGG | + | chr4_4:60693147-60693166 | Msa0692270:intron | 30.0% | |
| TGCTCAAAATTAGTGTTTAG+GGG | + | chr4_4:60693148-60693167 | Msa0692270:intron | 30.0% | |
| TAAGTCTAAATGAGTGACTT+AGG | + | chr4_4:60693173-60693192 | Msa0692270:intron | 30.0% | |
| ! | GTGACTTAGGTTTTCTTTTT+TGG | + | chr4_4:60693186-60693205 | Msa0692270:intron | 30.0% |
| ACTTTGATGTCAATGATCAT+CGG | + | chr4_4:60693237-60693256 | Msa0692270:intron | 30.0% | |
| !! | AAGATAGACGCTTTTTGTTT+AGG | + | chr4_4:60693350-60693369 | Msa0692270:intron | 30.0% |
| GTAGTCAAAGGATAAACTTT+AGG | - | chr4_4:60693454-60693473 | None:intergenic | 30.0% | |
| AAAGTTTATCCTTTGACTAC+TGG | + | chr4_4:60693454-60693473 | Msa0692270:intron | 30.0% | |
| AGTTATTTACATCCACATTG+TGG | - | chr4_4:60693687-60693706 | None:intergenic | 30.0% | |
| !! | TTGATTTGTGTTAATGTTGC+AGG | + | chr4_4:60693710-60693729 | Msa0692270:intron | 30.0% |
| CACATTGCTTCTTATTCACT+AGG | - | chr4_4:60691528-60691547 | None:intergenic | 35.0% | |
| AGTGAATAAGAAGCAATGTG+AGG | + | chr4_4:60691528-60691547 | Msa0692270:CDS | 35.0% | |
| GTGAATAAGAAGCAATGTGA+GGG | + | chr4_4:60691529-60691548 | Msa0692270:CDS | 35.0% | |
| GAGAAAGGAGGAAAAAAATG+AGG | + | chr4_4:60691653-60691672 | Msa0692270:CDS | 35.0% | |
| GATTCCTCATCTTACTTACA+AGG | + | chr4_4:60691702-60691721 | Msa0692270:CDS | 35.0% | |
| !! | CTTGGTGCACATTTTATGAA+AGG | - | chr4_4:60691814-60691833 | None:intergenic | 35.0% |
| TTTGTTCTTTGTACTATGGC+AGG | + | chr4_4:60691960-60691979 | Msa0692270:intron | 35.0% | |
| TGCATGTCACTCAACATATA+CGG | + | chr4_4:60692046-60692065 | Msa0692270:intron | 35.0% | |
| ! | CTCTTTTCACAAAGAACCAA+CGG | + | chr4_4:60692215-60692234 | Msa0692270:intron | 35.0% |
| !!! | ACTTCAAATGCACTAGCTTT+TGG | + | chr4_4:60692606-60692625 | Msa0692270:CDS | 35.0% |
| TTCATCTCCGCAAATGTTAA+AGG | - | chr4_4:60692658-60692677 | None:intergenic | 35.0% | |
| ! | GTAGCTGTTTCCATTATCAT+TGG | - | chr4_4:60692784-60692803 | None:intergenic | 35.0% |
| ! | ATTTGAAACTTACATGGGCT+TGG | - | chr4_4:60692812-60692831 | None:intergenic | 35.0% |
| GTACTTGTAGAGTAATTTGG+AGG | + | chr4_4:60692877-60692896 | Msa0692270:intron | 35.0% | |
| CTCAAGCGAAATCGTAAAAA+TGG | - | chr4_4:60693055-60693074 | None:intergenic | 35.0% | |
| !!! | TTTTTTGGTCTCGATGTTGA+CGG | + | chr4_4:60693201-60693220 | Msa0692270:intron | 35.0% |
| TTCTTCCTTAGTCCTTTCTT+CGG | + | chr4_4:60693394-60693413 | Msa0692270:intron | 35.0% | |
| CATTATTGTTCTCCGAAGAA+AGG | - | chr4_4:60693409-60693428 | None:intergenic | 35.0% | |
| TTCTTCGGAGAACAATAATG+TGG | + | chr4_4:60693409-60693428 | Msa0692270:intron | 35.0% | |
| TCTTCGGAGAACAATAATGT+GGG | + | chr4_4:60693410-60693429 | Msa0692270:intron | 35.0% | |
| TAAAGATGCATGTGTACTCA+CGG | - | chr4_4:60693655-60693674 | None:intergenic | 35.0% | |
| AAGCCAAAATGCAATTTCAG+TGG | + | chr4_4:60693752-60693771 | Msa0692270:CDS | 35.0% | |
| AATAAGAAGCAATGTGAGGG+AGG | + | chr4_4:60691532-60691551 | Msa0692270:CDS | 40.0% | |
| ATAAGAAGCAATGTGAGGGA+GGG | + | chr4_4:60691533-60691552 | Msa0692270:CDS | 40.0% | |
| TTAGACCAAAACACTCTTCG+AGG | - | chr4_4:60691838-60691857 | None:intergenic | 40.0% | |
| CGATTCATGGAGGTTCATAT+AGG | - | chr4_4:60692086-60692105 | None:intergenic | 40.0% | |
| GGTAGATTCTGTAACCATTG+TGG | + | chr4_4:60692446-60692465 | Msa0692270:intron | 40.0% | |
| AGATTCTGTAACCATTGTGG+AGG | + | chr4_4:60692449-60692468 | Msa0692270:CDS | 40.0% | |
| !!! | CACTAGCTTTTGGACAAATG+TGG | + | chr4_4:60692616-60692635 | Msa0692270:CDS | 40.0% |
| AAGAATGTGTGTGTTCGAGA+AGG | + | chr4_4:60692937-60692956 | Msa0692270:intron | 40.0% | |
| CATCGGATTTCTTTCAGTCA+TGG | + | chr4_4:60693254-60693273 | Msa0692270:intron | 40.0% | |
| ATGACACATCGACGATACTA+CGG | - | chr4_4:60693327-60693346 | None:intergenic | 40.0% | |
| ! | CCTCCACTGAAATTGCATTT+TGG | - | chr4_4:60693758-60693777 | None:intergenic | 40.0% |
| CCAAAATGCAATTTCAGTGG+AGG | + | chr4_4:60693755-60693774 | Msa0692270:CDS | 40.0% | |
| TAAGAAGCAATGTGAGGGAG+GGG | + | chr4_4:60691534-60691553 | Msa0692270:CDS | 45.0% | |
| ! | ATGCACTTGCTGAGAGAGAA+AGG | + | chr4_4:60691638-60691657 | Msa0692270:CDS | 45.0% |
| CAAAACACTCTTCGAGGACT+TGG | - | chr4_4:60691832-60691851 | None:intergenic | 45.0% | |
| !!! | CAAGTCCTCGAAGAGTGTTT+TGG | + | chr4_4:60691830-60691849 | Msa0692270:intron | 45.0% |
| ACAACAAAAAAAGGTCGGGC+AGG | + | chr4_4:60692244-60692263 | Msa0692270:intron | 45.0% | |
| TGACACATCGACGATACTAC+GGG | - | chr4_4:60693326-60693345 | None:intergenic | 45.0% | |
| GTTCTCCGAAGAAAGGACTA+AGG | - | chr4_4:60693402-60693421 | None:intergenic | 45.0% | |
| TTCTTCTGGCCAGTAGTCAA+AGG | - | chr4_4:60693466-60693485 | None:intergenic | 45.0% | |
| GAAAGTTACAAGCTAGCAGC+AGG | + | chr4_4:60693777-60693796 | Msa0692270:CDS | 45.0% | |
| AGCTAGCAGCAGGAGAAATT+AGG | + | chr4_4:60693787-60693806 | Msa0692270:CDS | 45.0% | |
| GCTAGCAGCAGGAGAAATTA+GGG | + | chr4_4:60693788-60693807 | Msa0692270:CDS | 45.0% | |
| CTAGCAGCAGGAGAAATTAG+GGG | + | chr4_4:60693789-60693808 | Msa0692270:CDS | 45.0% | |
| ! | CACTTGCTGAGAGAGAAAGG+AGG | + | chr4_4:60691641-60691660 | Msa0692270:CDS | 50.0% |
| ACAAAAAAAGGTCGGGCAGG+AGG | + | chr4_4:60692247-60692266 | Msa0692270:intron | 50.0% | |
| CTTCACTGCTTCCTCCACAA+TGG | - | chr4_4:60692463-60692482 | None:intergenic | 50.0% | |
| GACACATCGACGATACTACG+GGG | - | chr4_4:60693325-60693344 | None:intergenic | 50.0% | |
| TCGGGCAGGAGGTAGAGATT+AGG | + | chr4_4:60692258-60692277 | Msa0692270:intron | 55.0% | |
| CGGGCAGGAGGTAGAGATTA+GGG | + | chr4_4:60692259-60692278 | Msa0692270:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 60691370 | 60693827 | 60691370 | ID=Msa0692270;Name=Msa0692270 |
| chr4_4 | mRNA | 60691370 | 60693827 | 60691370 | ID=Msa0692270-mRNA-1;Parent=Msa0692270;Name=Msa0692270-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|273 |
| chr4_4 | exon | 60691370 | 60691723 | 60691370 | ID=Msa0692270-mRNA-1:exon:16683;Parent=Msa0692270-mRNA-1 |
| chr4_4 | exon | 60692447 | 60692818 | 60692447 | ID=Msa0692270-mRNA-1:exon:16684;Parent=Msa0692270-mRNA-1 |
| chr4_4 | exon | 60693732 | 60693827 | 60693732 | ID=Msa0692270-mRNA-1:exon:16685;Parent=Msa0692270-mRNA-1 |
| chr4_4 | CDS | 60691370 | 60691723 | 60691370 | ID=Msa0692270-mRNA-1:cds;Parent=Msa0692270-mRNA-1 |
| chr4_4 | CDS | 60692447 | 60692818 | 60692447 | ID=Msa0692270-mRNA-1:cds;Parent=Msa0692270-mRNA-1 |
| chr4_4 | CDS | 60693732 | 60693827 | 60693732 | ID=Msa0692270-mRNA-1:cds;Parent=Msa0692270-mRNA-1 |
| Gene Sequence |
| Protein sequence |