AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0692690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692690 MtrunA17_Chr4g0076771 99.222 257 1 1 1 257 1 256 0.0 528
Msa0692690 MtrunA17_Chr8g0343441 71.311 244 70 0 10 253 9 252 2.26e-111 321
Msa0692690 MtrunA17_Chr1g0150821 67.589 253 75 2 10 255 10 262 3.47e-105 305
Msa0692690 MtrunA17_Chr2g0300241 68.548 248 69 4 10 255 12 252 2.59e-104 303
Msa0692690 MtrunA17_Chr2g0329821 67.194 253 77 2 1 253 1 247 2.95e-103 300
Msa0692690 MtrunA17_Chr7g0242511 62.302 252 84 5 4 255 1 241 1.29e-93 275
Msa0692690 MtrunA17_Chr4g0006381 61.508 252 86 5 4 255 1 241 2.72e-90 267
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692690 AT2G02470.1 78.764 259 47 5 1 255 1 255 3.75e-129 366
Msa0692690 AT1G14510.1 78.656 253 49 3 1 253 1 248 1.01e-126 360
Msa0692690 AT2G02470.2 76.357 258 46 5 1 255 1 246 4.07e-123 350
Msa0692690 AT5G20510.1 67.181 259 81 3 1 255 1 259 1.84e-110 319
Msa0692690 AT3G42790.1 66.667 255 79 3 1 255 1 249 8.30e-110 317
Msa0692690 AT5G05610.2 63.347 251 79 5 5 255 3 240 3.02e-95 280
Msa0692690 AT5G05610.1 63.347 251 79 5 5 255 3 240 3.02e-95 280
Msa0692690 AT5G26210.1 67.331 251 72 3 10 255 9 254 3.57e-93 275
Msa0692690 AT3G11200.1 63.137 255 84 4 1 255 1 245 1.12e-88 263
Msa0692690 AT5G20510.2 66.512 215 68 3 45 255 4 218 3.89e-86 256
Msa0692690 AT2G02470.3 82.317 164 25 3 1 164 1 160 3.72e-84 252
Msa0692690 AT3G11200.2 62.844 218 71 4 38 255 25 232 6.28e-75 228
Msa0692690 AT5G20510.3 72.561 164 43 2 1 162 1 164 1.52e-73 223

Find 116 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCGCTGTTGCTTTCTATTT+TGG 0.091188 4_4:+61328268 Msa0692690:CDS
AATGAGTCTGCTTTACAATT+TGG 0.183117 4_4:-61330837 None:intergenic
CATCAGTGTAATTTCTCTTT+GGG 0.236050 4_4:+61331291 Msa0692690:three_prime_UTR
TTTCCTAGAGTGATAATTTC+AGG 0.245410 4_4:+61331392 Msa0692690:three_prime_UTR
AAGGAGAATTTGTGCCTCTA+TGG 0.272744 4_4:+61328094 Msa0692690:CDS
GTTCAGAGCTATCCAATTCT+TGG 0.273239 4_4:-61330553 None:intergenic
ATTATGGCACCGATGAATTC+TGG 0.291624 4_4:+61330419 Msa0692690:CDS
ACATCAGTGTAATTTCTCTT+TGG 0.294207 4_4:+61331290 Msa0692690:three_prime_UTR
GCAGAACACAATTTGAATAT+TGG 0.295566 4_4:+61331240 Msa0692690:three_prime_UTR
TTCACTTCCCATGTTTCATT+TGG 0.302703 4_4:-61328121 None:intergenic
TTTGGTGCCCGCTTTGGATT+TGG 0.319624 4_4:+61328286 Msa0692690:CDS
TTGTTACAGAAAATTGTCTT+AGG 0.333056 4_4:+61331429 Msa0692690:three_prime_UTR
ATCTTCAGATTGCATCTTGC+GGG 0.342224 4_4:+61331333 Msa0692690:three_prime_UTR
TTGGATTTGGTAAGAATGAT+AGG 0.350809 4_4:+61328299 Msa0692690:CDS
AATCTAAGCATTCAAACAAT+TGG 0.359158 4_4:-61331084 None:intergenic
TCTTCAACAGTTCGAGGTAC+TGG 0.372632 4_4:-61327166 None:intergenic
AGTCCCTTTGAGGACAATCT+TGG 0.377581 4_4:-61330870 None:intergenic
ATTGGATAGCTCTGAACGTT+TGG 0.378486 4_4:+61330559 Msa0692690:exon
ATTCTAATCTTGCCCGCTAA+TGG 0.382512 4_4:-61330583 None:intergenic
AATTGTAAAGCAGACTCATT+TGG 0.383429 4_4:+61330840 Msa0692690:three_prime_UTR
ACATCTTCACACCCTTGGTC+TGG 0.386000 4_4:-61330306 None:intergenic
CCTTTCATCGTTGTAATGCT+TGG 0.387593 4_4:+61331201 Msa0692690:three_prime_UTR
TTGGTGTACAGTTCTGATCT+TGG 0.399828 4_4:+61331259 Msa0692690:three_prime_UTR
TCAGGAGGCACTTCCTCAAC+AGG 0.419078 4_4:-61328148 None:intergenic
CAGTTCTGATCTTGGCCATT+CGG 0.419315 4_4:+61331267 Msa0692690:three_prime_UTR
ACAGTCTTTGAGCTTGCAAC+AGG 0.426181 4_4:+61330089 Msa0692690:CDS
GGTGCTTGTGGTGATAATTA+TGG 0.428882 4_4:+61330403 Msa0692690:CDS
CATTGGGTATAAACTTTGCT+CGG 0.446703 4_4:+61328185 Msa0692690:CDS
AGTATCAAGAAGCCAAGAAT+TGG 0.452358 4_4:+61330541 Msa0692690:CDS
AAAACTTCTTCAACAGTTCG+AGG 0.455840 4_4:-61327172 None:intergenic
AATGCTGGCTCGGGAAGTTC+AGG 0.456279 4_4:-61328166 None:intergenic
CATCGTTGTAATGCTTGGTC+TGG 0.459488 4_4:+61331206 Msa0692690:three_prime_UTR
AATCCTGAAATTATCACTCT+AGG 0.460307 4_4:-61331395 None:intergenic
CTGTCAACCTCTTCTTTGAC+CGG 0.460633 4_4:-61330334 None:intergenic
GGCTTCTTGATACTGCAGCC+AGG 0.465655 4_4:-61330532 None:intergenic
TGAACTTCCCGAGCCAGCAT+TGG 0.471886 4_4:+61328168 Msa0692690:CDS
GTTTATACCCAATGCTGGCT+CGG 0.475497 4_4:-61328176 None:intergenic
TTGAGTTGAAATTGAAATTG+AGG 0.475926 4_4:+61327122 Msa0692690:five_prime_UTR
GCAGCATCCAAGTCCCTTTG+AGG 0.478714 4_4:-61330880 None:intergenic
CTTTGCTCGGGATGGAATGC+AGG 0.478727 4_4:+61328198 Msa0692690:CDS
GGTTGACAGTGGAGAAGAAG+AGG 0.483798 4_4:+61330348 Msa0692690:CDS
AGATTGTCCTCAAAGGGACT+TGG 0.486100 4_4:+61330873 Msa0692690:three_prime_UTR
TGCAGACATCTTCACACCCT+TGG 0.486335 4_4:-61330311 None:intergenic
CTTCAACAGTTCGAGGTACT+GGG 0.491143 4_4:-61327165 None:intergenic
CATCTTCACACCCTTGGTCT+GGG 0.494259 4_4:-61330305 None:intergenic
AGGAGAATTTGTGCCTCTAT+GGG 0.495200 4_4:+61328095 Msa0692690:CDS
GAACTTCCCGAGCCAGCATT+GGG 0.495975 4_4:+61328169 Msa0692690:CDS
TTGATGTGTTCAGCCTTGGC+AGG 0.497341 4_4:-61330496 None:intergenic
TTGATCAAAGCTCTCACTAC+TGG 0.498155 4_4:+61327223 Msa0692690:CDS
CTGAACGTTTGGACCATTAG+CGG 0.498737 4_4:+61330570 Msa0692690:three_prime_UTR
CATTGAAGCTACTGTTGAGA+AGG 0.499459 4_4:+61331139 Msa0692690:three_prime_UTR
GGTATAAACTTTGCTCGGGA+TGG 0.501826 4_4:+61328190 Msa0692690:CDS
TTGCTTGATGTGTTCAGCCT+TGG 0.502589 4_4:-61330500 None:intergenic
TTTATACCCAATGCTGGCTC+GGG 0.504159 4_4:-61328175 None:intergenic
TGAACGTTTGGACCATTAGC+GGG 0.504547 4_4:+61330571 Msa0692690:three_prime_UTR
AACAGCCTCGAGGAAATTTG+AGG 0.509623 4_4:+61331042 Msa0692690:intron
GTTGAAATTGAAATTGAGGA+TGG 0.513389 4_4:+61327126 Msa0692690:exon
ATCAGTGTAATTTCTCTTTG+GGG 0.516447 4_4:+61331292 Msa0692690:three_prime_UTR
ATTGGGTATAAACTTTGCTC+GGG 0.520391 4_4:+61328186 Msa0692690:CDS
AGTGAGAGCTTTGATCAAAC+CGG 0.520678 4_4:-61327218 None:intergenic
TCTCCAAGATTGTCCTCAAA+GGG 0.522695 4_4:+61330867 Msa0692690:three_prime_UTR
CCAAGCATTACAACGATGAA+AGG 0.525873 4_4:-61331201 None:intergenic
CATTGTTGTGAGCAGTCAGT+TGG 0.529254 4_4:-61330133 None:intergenic
GCTTCTTGATACTGCAGCCA+GGG 0.530817 4_4:-61330531 None:intergenic
ACTAACCGGGATCGCAGAGC+TGG 0.531212 4_4:-61327354 None:intergenic
AAATTGAAATTGAGGATGGA+AGG 0.531943 4_4:+61327130 Msa0692690:exon
GTCTCCAAGATTGTCCTCAA+AGG 0.536958 4_4:+61330866 Msa0692690:three_prime_UTR
GAAATTGAGGATGGAAGGAA+TGG 0.537738 4_4:+61327135 Msa0692690:exon
CCTTGGTCTGGGATTCAGAC+TGG 0.538724 4_4:-61330294 None:intergenic
TTGCAGTTCACAGTGACTCA+TGG 0.543636 4_4:+61328242 Msa0692690:CDS
AGGAAATTTGAGGTGACTGA+AGG 0.545429 4_4:+61331052 Msa0692690:three_prime_UTR
CAAGCATTACAACGATGAAA+GGG 0.550279 4_4:-61331200 None:intergenic
AATAGCAAATACAAATCAAG+TGG 0.552353 4_4:+61330161 Msa0692690:CDS
GTTGTGATATGTGCGAGAAA+TGG 0.560529 4_4:+61330446 Msa0692690:CDS
TTTCATTTGGAAACCCATAG+AGG 0.561848 4_4:-61328108 None:intergenic
GCAAAGTTTATACCCAATGC+TGG 0.563847 4_4:-61328181 None:intergenic
GGAGAAGGACTGGTTATCAC+TGG 0.565404 4_4:+61328219 Msa0692690:CDS
AAAGAAAAGCGAAAATCTAG+TGG 0.565767 4_4:+61327091 Msa0692690:five_prime_UTR
TCGGGATGGAATGCAGGAGA+AGG 0.567649 4_4:+61328204 Msa0692690:CDS
ATGGGTTTCCAAATGAAACA+TGG 0.572525 4_4:+61328113 Msa0692690:CDS
ATTATCACCACAAGCACCAC+AGG 0.573675 4_4:-61330398 None:intergenic
AATCTTCAGATTGCATCTTG+CGG 0.576300 4_4:+61331332 Msa0692690:three_prime_UTR
ATCAAGCAATACAAGTGCCC+TGG 0.578416 4_4:+61330514 Msa0692690:CDS
ATTGAAGCTACTGTTGAGAA+GGG 0.578976 4_4:+61331140 Msa0692690:three_prime_UTR
GGTCTGGGATTCAGACTGGC+GGG 0.580455 4_4:-61330290 None:intergenic
TGTTAAAATTACTCCTGCCA+AGG 0.581201 4_4:+61330483 Msa0692690:CDS
ATGGAATGCAGGAGAAGGAC+TGG 0.581252 4_4:+61328209 Msa0692690:CDS
CAAATACAAATCAAGTGGAA+AGG 0.584281 4_4:+61330166 Msa0692690:CDS
TGTTGCAAGCTCAAAGACTG+TGG 0.590482 4_4:-61330087 None:intergenic
ATTCTTACCAAATCCAAAGC+GGG 0.591224 4_4:-61328293 None:intergenic
GTCTGCACCGGTCAAAGAAG+AGG 0.597402 4_4:+61330327 Msa0692690:CDS
TGGTCTGGGATTCAGACTGG+CGG 0.601563 4_4:-61330291 None:intergenic
GGGTGTGAAGATGTCTGCAC+CGG 0.601595 4_4:+61330315 Msa0692690:CDS
TGGGTTTCCAAATGAAACAT+GGG 0.604798 4_4:+61328114 Msa0692690:CDS
GATTACAAAGGCAGACGCGC+CGG 0.610248 4_4:+61327199 Msa0692690:CDS
GGTGCAACCTGTGGTGCTTG+TGG 0.611921 4_4:+61330391 Msa0692690:CDS
GTTGCAAGCTCAAAGACTGT+GGG 0.616342 4_4:-61330086 None:intergenic
GGAAGTGAACTTGCCTGTTG+AGG 0.623158 4_4:+61328135 Msa0692690:CDS
AGGAACTGCTAAGCAATCAA+AGG 0.625294 4_4:+61330109 Msa0692690:CDS
AAGAAAAGCGAAAATCTAGT+GGG 0.627706 4_4:+61327092 Msa0692690:five_prime_UTR
ATGTGCGAGAAATGGTTCCA+TGG 0.628526 4_4:+61330454 Msa0692690:CDS
AAATTACACTGATGTCCGAA+TGG 0.630833 4_4:-61331282 None:intergenic
ATCTCAAGATCATTTCTCCA+CGG 0.631669 4_4:-61331113 None:intergenic
AGGGACTTGGATGCTGCTCG+TGG 0.634998 4_4:+61330886 Msa0692690:three_prime_UTR
CAGTCTGAATCCCAGACCAA+GGG 0.635249 4_4:+61330295 Msa0692690:CDS
ACAACAGATCCAGAATTCAT+CGG 0.639218 4_4:-61330428 None:intergenic
ATGCTTAGATTAAGCTACCG+TGG 0.641025 4_4:+61331096 Msa0692690:three_prime_UTR
CCAGTCTGAATCCCAGACCA+AGG 0.643258 4_4:+61330294 Msa0692690:CDS
CAACTGACTGCTCACAACAA+TGG 0.646947 4_4:+61330134 Msa0692690:CDS
TTGTAATGCTTGGTCTGGTG+AGG 0.650483 4_4:+61331211 Msa0692690:three_prime_UTR
GCTGGCTCGGGAAGTTCAGG+AGG 0.654216 4_4:-61328163 None:intergenic
GTCAAAGAAGAGGTTGACAG+TGG 0.669063 4_4:+61330337 Msa0692690:CDS
GAAGAAGATGATGATGAACA+AGG 0.695245 4_4:+61330370 Msa0692690:CDS
AGTCACCTCAAATTTCCTCG+AGG 0.706846 4_4:-61331047 None:intergenic
GATGAACAAGGTGCAACCTG+TGG 0.715909 4_4:+61330382 Msa0692690:CDS
CATTCTTACCAAATCCAAAG+CGG 0.722080 4_4:-61328294 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAGAAAAAAGAAAAAA+AGG - chr4_4:61327455-61327474 None:intergenic 10.0%
!!! TTTAAACAATAACTTTTTAT+GGG - chr4_4:61328029-61328048 None:intergenic 10.0%
!! CATAAAATAAAAATATGAAA+TGG - chr4_4:61330203-61330222 None:intergenic 10.0%
!!! CTTTAAACAATAACTTTTTA+TGG - chr4_4:61328030-61328049 None:intergenic 15.0%
!! TAAGCAAAAAAGTAAAATAA+TGG + chr4_4:61328844-61328863 Msa0692690:intron 15.0%
!!! TATTTCTTTTGCAAAATAAT+TGG + chr4_4:61329861-61329880 Msa0692690:intron 15.0%
!!! TTTCTGCATTTTTTTTAAAA+GGG + chr4_4:61330811-61330830 Msa0692690:intron 15.0%
!!! ATTCAAACATTTATTTTAAG+CGG + chr4_4:61331007-61331026 Msa0692690:intron 15.0%
!! TTTATCACAAAACAACAAAA+AGG + chr4_4:61328874-61328893 Msa0692690:intron 20.0%
!!! TATAGCATTATTGGTTTTAT+AGG - chr4_4:61329304-61329323 None:intergenic 20.0%
!! ATAAAACCAATAATGCTATA+TGG + chr4_4:61329304-61329323 Msa0692690:intron 20.0%
!! TAAAACCAATAATGCTATAT+GGG + chr4_4:61329305-61329324 Msa0692690:intron 20.0%
!! TTTAGGGAAATTTAGTTATA+TGG + chr4_4:61329592-61329611 Msa0692690:intron 20.0%
!! TGTACGTGATATTAATATTT+AGG + chr4_4:61329995-61330014 Msa0692690:intron 20.0%
!!! TTAGGATTTTCATCTAATTT+TGG + chr4_4:61330013-61330032 Msa0692690:intron 20.0%
!!! TAATTTTAACACATTTACCA+TGG - chr4_4:61330474-61330493 None:intergenic 20.0%
!! TAAATATATTATGCAGTTTC+TGG + chr4_4:61330766-61330785 Msa0692690:intron 20.0%
!!! GTTTCTGCATTTTTTTTAAA+AGG + chr4_4:61330810-61330829 Msa0692690:intron 20.0%
!!! TTCTGCATTTTTTTTAAAAG+GGG + chr4_4:61330812-61330831 Msa0692690:intron 20.0%
!!! TTCAAACATTTATTTTAAGC+GGG + chr4_4:61331008-61331027 Msa0692690:intron 20.0%
!!! TTGAGTTGAAATTGAAATTG+AGG + chr4_4:61327122-61327141 Msa0692690:five_prime_UTR 25.0%
!!! AAAATTGTAGCATTTTAAGG+CGG - chr4_4:61327664-61327683 None:intergenic 25.0%
! AATAAGAGGACAAAACAAAA+TGG - chr4_4:61327737-61327756 None:intergenic 25.0%
!! AGCACTGAATTAAAAATAAG+AGG - chr4_4:61327751-61327770 None:intergenic 25.0%
!! AATGAAGGTATATTGGTAAT+AGG - chr4_4:61327778-61327797 None:intergenic 25.0%
!! TTTTATGGGTTTTTCCTATT+GGG - chr4_4:61328015-61328034 None:intergenic 25.0%
!! TTTTTATGGGTTTTTCCTAT+TGG - chr4_4:61328016-61328035 None:intergenic 25.0%
! TGTAGACAAACATGAAAAAT+TGG + chr4_4:61328510-61328529 Msa0692690:intron 25.0%
! TTACAACACAAAAATCAACA+TGG + chr4_4:61328652-61328671 Msa0692690:intron 25.0%
! TACAACACAAAAATCAACAT+GGG + chr4_4:61328653-61328672 Msa0692690:intron 25.0%
! GGTTGAAAATGAAAAAACAA+GGG - chr4_4:61328900-61328919 None:intergenic 25.0%
! TGGTTGAAAATGAAAAAACA+AGG - chr4_4:61328901-61328920 None:intergenic 25.0%
! CAGAATTCAAAAACTATACA+TGG - chr4_4:61328921-61328940 None:intergenic 25.0%
! AGAATAATGATTAGCGTAAT+TGG + chr4_4:61329240-61329259 Msa0692690:intron 25.0%
! AGGGATAAAAGAAAAACTTT+AGG + chr4_4:61329561-61329580 Msa0692690:intron 25.0%
!!! AAAGATGACGGATTAAAATT+GGG - chr4_4:61329726-61329745 None:intergenic 25.0%
! AGTATATATCTCAAAGATGA+CGG - chr4_4:61329738-61329757 None:intergenic 25.0%
!! TTTTGCAAAATAATTGGCAT+AGG + chr4_4:61329867-61329886 Msa0692690:intron 25.0%
! TTTGCAAAATAATTGGCATA+GGG + chr4_4:61329868-61329887 Msa0692690:intron 25.0%
! TCAAAAAGCCATATTTCTTA+AGG + chr4_4:61329915-61329934 Msa0692690:intron 25.0%
!!! TCATCTAATTTTGGTTGAAA+TGG + chr4_4:61330022-61330041 Msa0692690:intron 25.0%
! AAATGGTTATTTACAGGAAA+AGG + chr4_4:61330039-61330058 Msa0692690:intron 25.0%
! AATAGCAAATACAAATCAAG+TGG + chr4_4:61330161-61330180 Msa0692690:CDS 25.0%
!!! TTGTGTTTTTAAGTAGTCAT+TGG + chr4_4:61330730-61330749 Msa0692690:intron 25.0%
!!! TCAAACATTTATTTTAAGCG+GGG + chr4_4:61331009-61331028 Msa0692690:intron 25.0%
! AATCTAAGCATTCAAACAAT+TGG - chr4_4:61331087-61331106 None:intergenic 25.0%
!!! TCTGATTAGAAGTTTTAGTT+AGG + chr4_4:61331362-61331381 Msa0692690:three_prime_UTR 25.0%
!! CAATTTTCTGTAACAACTAA+GGG - chr4_4:61331425-61331444 None:intergenic 25.0%
!! ACAATTTTCTGTAACAACTA+AGG - chr4_4:61331426-61331445 None:intergenic 25.0%
! TTGTTACAGAAAATTGTCTT+AGG + chr4_4:61331429-61331448 Msa0692690:three_prime_UTR 25.0%
AAAGAAAAGCGAAAATCTAG+TGG + chr4_4:61327091-61327110 Msa0692690:five_prime_UTR 30.0%
AAGAAAAGCGAAAATCTAGT+GGG + chr4_4:61327092-61327111 Msa0692690:five_prime_UTR 30.0%
GTTGAAATTGAAATTGAGGA+TGG + chr4_4:61327126-61327145 Msa0692690:exon 30.0%
AAATTGAAATTGAGGATGGA+AGG + chr4_4:61327130-61327149 Msa0692690:exon 30.0%
!!! GAAGTTTTTAGCGATTACAA+AGG + chr4_4:61327187-61327206 Msa0692690:CDS 30.0%
! TAAGAGCATAGCAGAAAATA+AGG - chr4_4:61327419-61327438 None:intergenic 30.0%
AAGAAAAAAAGGAAAACCCT+AGG - chr4_4:61327444-61327463 None:intergenic 30.0%
! ATGTATACAAAGAGTGTGTA+TGG - chr4_4:61327519-61327538 None:intergenic 30.0%
! GCCTTAAAATGCTACAATTT+TGG + chr4_4:61327663-61327682 Msa0692690:intron 30.0%
! GCCAAAATTGTAGCATTTTA+AGG - chr4_4:61327667-61327686 None:intergenic 30.0%
CCAACTTCAAAAGATAACAA+AGG - chr4_4:61327852-61327871 None:intergenic 30.0%
!!! CCTTTGTTATCTTTTGAAGT+TGG + chr4_4:61327849-61327868 Msa0692690:intron 30.0%
! ATGATTTGCAAACATGGATT+AGG - chr4_4:61327893-61327912 None:intergenic 30.0%
! CAAAAGATGATTTGCAAACA+TGG - chr4_4:61327899-61327918 None:intergenic 30.0%
! TTGGATTTGGTAAGAATGAT+AGG + chr4_4:61328299-61328318 Msa0692690:CDS 30.0%
ATCCATAACTTTCTCAACAA+GGG - chr4_4:61328619-61328638 None:intergenic 30.0%
AATCCATAACTTTCTCAACA+AGG - chr4_4:61328620-61328639 None:intergenic 30.0%
CTTATTCTTTCTCATGACTA+CGG + chr4_4:61328692-61328711 Msa0692690:intron 30.0%
!! GTTGTTTTGTGATAAAAACG+AGG - chr4_4:61328870-61328889 None:intergenic 30.0%
TTTCTCTCTTCAATAGACTT+TGG + chr4_4:61329073-61329092 Msa0692690:intron 30.0%
CCATGTTATTCAAAACTATG+TGG - chr4_4:61329149-61329168 None:intergenic 30.0%
!!! CCACATAGTTTTGAATAACA+TGG + chr4_4:61329146-61329165 Msa0692690:intron 30.0%
GATCGAATGTACAAAATGAT+GGG + chr4_4:61329168-61329187 Msa0692690:intron 30.0%
ATCGAATGTACAAAATGATG+GGG + chr4_4:61329169-61329188 Msa0692690:intron 30.0%
!! ATTATCCTCTCTAAAACACT+CGG - chr4_4:61329369-61329388 None:intergenic 30.0%
GATAATGTTACAATGATGAG+TGG + chr4_4:61329383-61329402 Msa0692690:intron 30.0%
ATGAGTGGTTACATAAGATT+AGG + chr4_4:61329398-61329417 Msa0692690:intron 30.0%
TGGTTACATAAGATTAGGAA+AGG + chr4_4:61329403-61329422 Msa0692690:intron 30.0%
TTACATAAGATTAGGAAAGG+TGG + chr4_4:61329406-61329425 Msa0692690:intron 30.0%
AACTTTAGGTCAACTCATTT+AGG + chr4_4:61329575-61329594 Msa0692690:intron 30.0%
ACTTTAGGTCAACTCATTTA+GGG + chr4_4:61329576-61329595 Msa0692690:intron 30.0%
!! AAGATGACGGATTAAAATTG+GGG - chr4_4:61329725-61329744 None:intergenic 30.0%
!! CAAAGATGACGGATTAAAAT+TGG - chr4_4:61329727-61329746 None:intergenic 30.0%
TGTCAATTGTATAGGGAAAA+GGG - chr4_4:61329784-61329803 None:intergenic 30.0%
TTGTCAATTGTATAGGGAAA+AGG - chr4_4:61329785-61329804 None:intergenic 30.0%
GAGTCATTGTCAATTGTATA+GGG - chr4_4:61329791-61329810 None:intergenic 30.0%
TGAGTCATTGTCAATTGTAT+AGG - chr4_4:61329792-61329811 None:intergenic 30.0%
ATGATAGTCCAATCAAGAAT+TGG + chr4_4:61329826-61329845 Msa0692690:intron 30.0%
TGATAGTCCAATCAAGAATT+GGG + chr4_4:61329827-61329846 Msa0692690:intron 30.0%
TTGAGGATCCTTAAGAAATA+TGG - chr4_4:61329926-61329945 None:intergenic 30.0%
AATGCATATTGCTAGAAATC+TGG + chr4_4:61329952-61329971 Msa0692690:intron 30.0%
TGGTTGAAATGGTTATTTAC+AGG + chr4_4:61330033-61330052 Msa0692690:intron 30.0%
CAAATACAAATCAAGTGGAA+AGG + chr4_4:61330166-61330185 Msa0692690:CDS 30.0%
TAAATAGTAGACAGTAGGAA+TGG - chr4_4:61330703-61330722 None:intergenic 30.0%
TTCCTACTGTCTACTATTTA+TGG + chr4_4:61330703-61330722 Msa0692690:intron 30.0%
TCCTACTGTCTACTATTTAT+GGG + chr4_4:61330704-61330723 Msa0692690:intron 30.0%
AATGAGTCTGCTTTACAATT+TGG - chr4_4:61330840-61330859 None:intergenic 30.0%
AATTGTAAAGCAGACTCATT+TGG + chr4_4:61330840-61330859 Msa0692690:three_prime_UTR 30.0%
! GCAAGATTCTTGACTTTTAT+GGG + chr4_4:61330908-61330927 Msa0692690:three_prime_UTR 30.0%
TTCGTGTAAGTATTTATCGA+AGG + chr4_4:61330943-61330962 Msa0692690:intron 30.0%
!!! CCTTGTTTTTCTCTTTCTTT+CGG - chr4_4:61330979-61330998 None:intergenic 30.0%
GCAGAACACAATTTGAATAT+TGG + chr4_4:61331240-61331259 Msa0692690:three_prime_UTR 30.0%
ACATCAGTGTAATTTCTCTT+TGG + chr4_4:61331290-61331309 Msa0692690:three_prime_UTR 30.0%
CATCAGTGTAATTTCTCTTT+GGG + chr4_4:61331291-61331310 Msa0692690:three_prime_UTR 30.0%
ATCAGTGTAATTTCTCTTTG+GGG + chr4_4:61331292-61331311 Msa0692690:three_prime_UTR 30.0%
TTTCCTAGAGTGATAATTTC+AGG + chr4_4:61331392-61331411 Msa0692690:three_prime_UTR 30.0%
AATCCTGAAATTATCACTCT+AGG - chr4_4:61331398-61331417 None:intergenic 30.0%
AAAACTTCTTCAACAGTTCG+AGG - chr4_4:61327175-61327194 None:intergenic 35.0%
! AGGTTGTTATTGATTGTGGA+TGG - chr4_4:61327689-61327708 None:intergenic 35.0%
! CCATAGGTTGTTATTGATTG+TGG - chr4_4:61327693-61327712 None:intergenic 35.0%
CCACAATCAATAACAACCTA+TGG + chr4_4:61327690-61327709 Msa0692690:intron 35.0%
! AGAAGGCAATGAAGGTATAT+TGG - chr4_4:61327785-61327804 None:intergenic 35.0%
TTTAATTGGATACGGTGAGA+AGG - chr4_4:61327802-61327821 None:intergenic 35.0%
CTCATTGACAATTGCAGAAA+AGG + chr4_4:61328075-61328094 Msa0692690:intron 35.0%
TTTCATTTGGAAACCCATAG+AGG - chr4_4:61328111-61328130 None:intergenic 35.0%
ATGGGTTTCCAAATGAAACA+TGG + chr4_4:61328113-61328132 Msa0692690:CDS 35.0%
TGGGTTTCCAAATGAAACAT+GGG + chr4_4:61328114-61328133 Msa0692690:CDS 35.0%
TTCACTTCCCATGTTTCATT+TGG - chr4_4:61328124-61328143 None:intergenic 35.0%
CATTGGGTATAAACTTTGCT+CGG + chr4_4:61328185-61328204 Msa0692690:CDS 35.0%
ATTGGGTATAAACTTTGCTC+GGG + chr4_4:61328186-61328205 Msa0692690:CDS 35.0%
ATTCTTACCAAATCCAAAGC+GGG - chr4_4:61328296-61328315 None:intergenic 35.0%
CATTCTTACCAAATCCAAAG+CGG - chr4_4:61328297-61328316 None:intergenic 35.0%
TGAACTTCTTTGATGCATCT+AGG + chr4_4:61328335-61328354 Msa0692690:intron 35.0%
CTTAGTAGCATGCTCATAAA+TGG + chr4_4:61328555-61328574 Msa0692690:intron 35.0%
TCCATAACTTTCTCAACAAG+GGG - chr4_4:61328618-61328637 None:intergenic 35.0%
TTCTGTGCTTCACAAAATGT+TGG + chr4_4:61328718-61328737 Msa0692690:intron 35.0%
TCTGTGCTTCACAAAATGTT+GGG + chr4_4:61328719-61328738 Msa0692690:intron 35.0%
! AGATTTTGTCACACAGTACA+GGG - chr4_4:61329039-61329058 None:intergenic 35.0%
TCTATTGAAGAGAGAAACAG+GGG - chr4_4:61329070-61329089 None:intergenic 35.0%
GTCTATTGAAGAGAGAAACA+GGG - chr4_4:61329071-61329090 None:intergenic 35.0%
AGTCTATTGAAGAGAGAAAC+AGG - chr4_4:61329072-61329091 None:intergenic 35.0%
ACTTTGGTACTATAGCATGT+TGG + chr4_4:61329089-61329108 Msa0692690:intron 35.0%
CTTTGGTACTATAGCATGTT+GGG + chr4_4:61329090-61329109 Msa0692690:intron 35.0%
GGATCGAATGTACAAAATGA+TGG + chr4_4:61329167-61329186 Msa0692690:intron 35.0%
ATGATTAGCGTAATTGGCAT+TGG + chr4_4:61329246-61329265 Msa0692690:intron 35.0%
GTAGTCCCATATAGCATTAT+TGG - chr4_4:61329313-61329332 None:intergenic 35.0%
AATGCTATATGGGACTACAT+AGG + chr4_4:61329315-61329334 Msa0692690:intron 35.0%
ATGCTATATGGGACTACATA+GGG + chr4_4:61329316-61329335 Msa0692690:intron 35.0%
TCTACACTCAAAACCACTTA+AGG - chr4_4:61329442-61329461 None:intergenic 35.0%
AGCCATTATAGGTCTATTGT+TGG + chr4_4:61329667-61329686 Msa0692690:intron 35.0%
TGCCAACAATAGACCTATAA+TGG - chr4_4:61329672-61329691 None:intergenic 35.0%
GATAGTCCAATCAAGAATTG+GGG + chr4_4:61329828-61329847 Msa0692690:intron 35.0%
CAATATGCATTCTCTTGTTG+AGG - chr4_4:61329943-61329962 None:intergenic 35.0%
!! TTAAAAGGAAGCATCCAAAC+AGG - chr4_4:61330266-61330285 None:intergenic 35.0%
! GAAGAAGATGATGATGAACA+AGG + chr4_4:61330370-61330389 Msa0692690:CDS 35.0%
ACAACAGATCCAGAATTCAT+CGG - chr4_4:61330431-61330450 None:intergenic 35.0%
TGTTAAAATTACTCCTGCCA+AGG + chr4_4:61330483-61330502 Msa0692690:CDS 35.0%
AGTATCAAGAAGCCAAGAAT+TGG + chr4_4:61330541-61330560 Msa0692690:CDS 35.0%
!! TAAAGAGCATTGACTAGAAC+AGG - chr4_4:61330644-61330663 None:intergenic 35.0%
TCCCATAAATAGTAGACAGT+AGG - chr4_4:61330708-61330727 None:intergenic 35.0%
! GGCAAGATTCTTGACTTTTA+TGG + chr4_4:61330907-61330926 Msa0692690:three_prime_UTR 35.0%
CCGAAAGAAAGAGAAAAACA+AGG + chr4_4:61330976-61330995 Msa0692690:intron 35.0%
!! TTTCATTTTTAACAGCCTCG+AGG + chr4_4:61331032-61331051 Msa0692690:intron 35.0%
ATCTCAAGATCATTTCTCCA+CGG - chr4_4:61331116-61331135 None:intergenic 35.0%
ATTGAAGCTACTGTTGAGAA+GGG + chr4_4:61331140-61331159 Msa0692690:three_prime_UTR 35.0%
CAAGCATTACAACGATGAAA+GGG - chr4_4:61331203-61331222 None:intergenic 35.0%
AAATTACACTGATGTCCGAA+TGG - chr4_4:61331285-61331304 None:intergenic 35.0%
AATCTTCAGATTGCATCTTG+CGG + chr4_4:61331332-61331351 Msa0692690:three_prime_UTR 35.0%
GAAATTGAGGATGGAAGGAA+TGG + chr4_4:61327135-61327154 Msa0692690:exon 40.0%
! AGTGAGAGCTTTGATCAAAC+CGG - chr4_4:61327221-61327240 None:intergenic 40.0%
TTGATCAAAGCTCTCACTAC+TGG + chr4_4:61327223-61327242 Msa0692690:CDS 40.0%
TCTGCAAGAGAAAGAGAAGA+AGG - chr4_4:61327319-61327338 None:intergenic 40.0%
TGAAGAACAGAGAACTAACC+GGG - chr4_4:61327370-61327389 None:intergenic 40.0%
GTGAAGAACAGAGAACTAAC+CGG - chr4_4:61327371-61327390 None:intergenic 40.0%
! ATTAAAAGCGCAGAGACAGA+CGG - chr4_4:61327393-61327412 None:intergenic 40.0%
!!! GCCACATTTTTTAAGCATGC+TGG + chr4_4:61327621-61327640 Msa0692690:intron 40.0%
GCCAGCATGCTTAAAAAATG+TGG - chr4_4:61327625-61327644 None:intergenic 40.0%
AGTTGCAGTTGATCATCCAT+AGG - chr4_4:61327709-61327728 None:intergenic 40.0%
CCGGTGAGTTTAATTGGATA+CGG - chr4_4:61327810-61327829 None:intergenic 40.0%
CCGTATCCAATTAAACTCAC+CGG + chr4_4:61327807-61327826 Msa0692690:intron 40.0%
CAAAGAGAAAAACGACAGAC+CGG - chr4_4:61327829-61327848 None:intergenic 40.0%
TTTCCTATTGGGATAGGCTA+CGG - chr4_4:61328004-61328023 None:intergenic 40.0%
! TGGGTTTTTCCTATTGGGAT+AGG - chr4_4:61328010-61328029 None:intergenic 40.0%
AAGGAGAATTTGTGCCTCTA+TGG + chr4_4:61328094-61328113 Msa0692690:CDS 40.0%
AGGAGAATTTGTGCCTCTAT+GGG + chr4_4:61328095-61328114 Msa0692690:CDS 40.0%
GCAAAGTTTATACCCAATGC+TGG - chr4_4:61328184-61328203 None:intergenic 40.0%
!!! CTCGCTGTTGCTTTCTATTT+TGG + chr4_4:61328268-61328287 Msa0692690:CDS 40.0%
CCATAACTTTCTCAACAAGG+GGG - chr4_4:61328617-61328636 None:intergenic 40.0%
ATTCTTTCTCATGACTACGG+AGG + chr4_4:61328695-61328714 Msa0692690:intron 40.0%
CTGTGCTTCACAAAATGTTG+GGG + chr4_4:61328720-61328739 Msa0692690:intron 40.0%
TAGCTAAAATCACGGAGGAA+TGG + chr4_4:61328783-61328802 Msa0692690:intron 40.0%
GAGGAATGGTAGAGAAATTG+CGG + chr4_4:61328797-61328816 Msa0692690:intron 40.0%
TAGAGAAATTGCGGAGAAGA+TGG + chr4_4:61328806-61328825 Msa0692690:intron 40.0%
AGAGAAATTGCGGAGAAGAT+GGG + chr4_4:61328807-61328826 Msa0692690:intron 40.0%
! GATTTTGTCACACAGTACAG+GGG - chr4_4:61329038-61329057 None:intergenic 40.0%
! GAGATTTTGTCACACAGTAC+AGG - chr4_4:61329040-61329059 None:intergenic 40.0%
TGATGGTTAGCGTAGCATAA+TGG - chr4_4:61329122-61329141 None:intergenic 40.0%
TATGCTACGCTAACCATCAT+TGG + chr4_4:61329123-61329142 Msa0692690:intron 40.0%
CAAAACTATGTGGCCAATGA+TGG - chr4_4:61329139-61329158 None:intergenic 40.0%
GTCAATCACAGGATCTTTGT+AGG + chr4_4:61329206-61329225 Msa0692690:intron 40.0%
ATCACAGGATCTTTGTAGGA+TGG + chr4_4:61329210-61329229 Msa0692690:intron 40.0%
TGCTATATGGGACTACATAG+GGG + chr4_4:61329317-61329336 Msa0692690:intron 40.0%
ATTCTTGCCTCAAGTGCTTT+GGG + chr4_4:61329473-61329492 Msa0692690:intron 40.0%
ATTCTGATGCTCAAGGTAGA+GGG + chr4_4:61329542-61329561 Msa0692690:intron 40.0%
CTTCTTGCAAATGCAGGATA+AGG - chr4_4:61329696-61329715 None:intergenic 40.0%
AATCTGCTTCTTGCAAATGC+AGG - chr4_4:61329702-61329721 None:intergenic 40.0%
ATAGGGAAAAGGGATCCAAT+GGG - chr4_4:61329774-61329793 None:intergenic 40.0%
TATAGGGAAAAGGGATCCAA+TGG - chr4_4:61329775-61329794 None:intergenic 40.0%
ACATCTCCCCAATTCTTGAT+TGG - chr4_4:61329837-61329856 None:intergenic 40.0%
CAAAATAATTGGCATAGGGC+AGG + chr4_4:61329872-61329891 Msa0692690:intron 40.0%
AGGAACTGCTAAGCAATCAA+AGG + chr4_4:61330109-61330128 Msa0692690:CDS 40.0%
TTCTATCACTGCCATGCATA+TGG + chr4_4:61330224-61330243 Msa0692690:intron 40.0%
ACGAGTGAATTCCATATGCA+TGG - chr4_4:61330238-61330257 None:intergenic 40.0%
! TTCACTCGTGTTTTCCTGTT+TGG + chr4_4:61330249-61330268 Msa0692690:intron 40.0%
GGTGCTTGTGGTGATAATTA+TGG + chr4_4:61330403-61330422 Msa0692690:CDS 40.0%
!! ATTATGGCACCGATGAATTC+TGG + chr4_4:61330419-61330438 Msa0692690:CDS 40.0%
GTTGTGATATGTGCGAGAAA+TGG + chr4_4:61330446-61330465 Msa0692690:CDS 40.0%
GTTCAGAGCTATCCAATTCT+TGG - chr4_4:61330556-61330575 None:intergenic 40.0%
!! ATTGGATAGCTCTGAACGTT+TGG + chr4_4:61330559-61330578 Msa0692690:exon 40.0%
ATTCTAATCTTGCCCGCTAA+TGG - chr4_4:61330586-61330605 None:intergenic 40.0%
TTGACTAGAACAGGCAACAA+TGG - chr4_4:61330635-61330654 None:intergenic 40.0%
TCTCCAAGATTGTCCTCAAA+GGG + chr4_4:61330867-61330886 Msa0692690:three_prime_UTR 40.0%
! AGGAAATTTGAGGTGACTGA+AGG + chr4_4:61331052-61331071 Msa0692690:three_prime_UTR 40.0%
ATGCTTAGATTAAGCTACCG+TGG + chr4_4:61331096-61331115 Msa0692690:three_prime_UTR 40.0%
CATTGAAGCTACTGTTGAGA+AGG + chr4_4:61331139-61331158 Msa0692690:three_prime_UTR 40.0%
CCAAGCATTACAACGATGAA+AGG - chr4_4:61331204-61331223 None:intergenic 40.0%
CCTTTCATCGTTGTAATGCT+TGG + chr4_4:61331201-61331220 Msa0692690:three_prime_UTR 40.0%
! TTGGTGTACAGTTCTGATCT+TGG + chr4_4:61331259-61331278 Msa0692690:three_prime_UTR 40.0%
ATCTTCAGATTGCATCTTGC+GGG + chr4_4:61331333-61331352 Msa0692690:three_prime_UTR 40.0%
! CTTCAACAGTTCGAGGTACT+GGG - chr4_4:61327168-61327187 None:intergenic 45.0%
TCTTCAACAGTTCGAGGTAC+TGG - chr4_4:61327169-61327188 None:intergenic 45.0%
TCTGCTATGCTCTTACTCCT+AGG + chr4_4:61327424-61327443 Msa0692690:intron 45.0%
CTGCTATGCTCTTACTCCTA+GGG + chr4_4:61327425-61327444 Msa0692690:intron 45.0%
! ACAACTTTTCTGCTGCAGTG+CGG + chr4_4:61327546-61327565 Msa0692690:intron 45.0%
ATACGGTGAGAAGGCAATGA+AGG - chr4_4:61327793-61327812 None:intergenic 45.0%
GACAGACCGGTGAGTTTAAT+TGG - chr4_4:61327816-61327835 None:intergenic 45.0%
!! TTTATACCCAATGCTGGCTC+GGG - chr4_4:61328178-61328197 None:intergenic 45.0%
! GTTTATACCCAATGCTGGCT+CGG - chr4_4:61328179-61328198 None:intergenic 45.0%
GGTATAAACTTTGCTCGGGA+TGG + chr4_4:61328190-61328209 Msa0692690:CDS 45.0%
TTGCAGTTCACAGTGACTCA+TGG + chr4_4:61328242-61328261 Msa0692690:CDS 45.0%
!!! TTCTATTTTGGTGCCCGCTT+TGG + chr4_4:61328280-61328299 Msa0692690:CDS 45.0%
CCCCCTTGTTGAGAAAGTTA+TGG + chr4_4:61328614-61328633 Msa0692690:intron 45.0%
ATCAACATGGGACGTGACTA+TGG + chr4_4:61328665-61328684 Msa0692690:intron 45.0%
TCAACATGGGACGTGACTAT+GGG + chr4_4:61328666-61328685 Msa0692690:intron 45.0%
TGCTTCACAAAATGTTGGGG+TGG + chr4_4:61328723-61328742 Msa0692690:intron 45.0%
GAGAAATTGCGGAGAAGATG+GGG + chr4_4:61328808-61328827 Msa0692690:intron 45.0%
TGTGACCTTTGTTGGACATG+CGG + chr4_4:61328974-61328993 Msa0692690:intron 45.0%
TAGATGACCACGTCAATCAC+AGG + chr4_4:61329195-61329214 Msa0692690:intron 45.0%
CAAAGATCCTGTGATTGACG+TGG - chr4_4:61329205-61329224 None:intergenic 45.0%
TGGTTGAGTCTTGCCTTAAG+TGG + chr4_4:61329426-61329445 Msa0692690:intron 45.0%
GATTCTTGCCTCAAGTGCTT+TGG + chr4_4:61329472-61329491 Msa0692690:intron 45.0%
TTCTTGCCTCAAGTGCTTTG+GGG + chr4_4:61329474-61329493 Msa0692690:intron 45.0%
! AGAACCAAGGTATCCCCAAT+CGG + chr4_4:61329508-61329527 Msa0692690:intron 45.0%
AATCAGACCATCCTCCGATT+GGG - chr4_4:61329525-61329544 None:intergenic 45.0%
TGGTCTGATTCTGATGCTCA+AGG + chr4_4:61329535-61329554 Msa0692690:intron 45.0%
GATTCTGATGCTCAAGGTAG+AGG + chr4_4:61329541-61329560 Msa0692690:intron 45.0%
GTTGCAAGCTCAAAGACTGT+GGG - chr4_4:61330089-61330108 None:intergenic 45.0%
TGTTGCAAGCTCAAAGACTG+TGG - chr4_4:61330090-61330109 None:intergenic 45.0%
ACAGTCTTTGAGCTTGCAAC+AGG + chr4_4:61330089-61330108 Msa0692690:CDS 45.0%
CATTGTTGTGAGCAGTCAGT+TGG - chr4_4:61330136-61330155 None:intergenic 45.0%
CAACTGACTGCTCACAACAA+TGG + chr4_4:61330134-61330153 Msa0692690:CDS 45.0%
CTGTCAACCTCTTCTTTGAC+CGG - chr4_4:61330337-61330356 None:intergenic 45.0%
GTCAAAGAAGAGGTTGACAG+TGG + chr4_4:61330337-61330356 Msa0692690:CDS 45.0%
ATTATCACCACAAGCACCAC+AGG - chr4_4:61330401-61330420 None:intergenic 45.0%
ATGTGCGAGAAATGGTTCCA+TGG + chr4_4:61330454-61330473 Msa0692690:CDS 45.0%
TTGCTTGATGTGTTCAGCCT+TGG - chr4_4:61330503-61330522 None:intergenic 45.0%
ATCAAGCAATACAAGTGCCC+TGG + chr4_4:61330514-61330533 Msa0692690:CDS 45.0%
CTGAACGTTTGGACCATTAG+CGG + chr4_4:61330570-61330589 Msa0692690:three_prime_UTR 45.0%
TGAACGTTTGGACCATTAGC+GGG + chr4_4:61330571-61330590 Msa0692690:three_prime_UTR 45.0%
GTCTCCAAGATTGTCCTCAA+AGG + chr4_4:61330866-61330885 Msa0692690:three_prime_UTR 45.0%
! AGTCCCTTTGAGGACAATCT+TGG - chr4_4:61330873-61330892 None:intergenic 45.0%
AGATTGTCCTCAAAGGGACT+TGG + chr4_4:61330873-61330892 Msa0692690:three_prime_UTR 45.0%
AACAGCCTCGAGGAAATTTG+AGG + chr4_4:61331042-61331061 Msa0692690:intron 45.0%
AGTCACCTCAAATTTCCTCG+AGG - chr4_4:61331050-61331069 None:intergenic 45.0%
CATCGTTGTAATGCTTGGTC+TGG + chr4_4:61331206-61331225 Msa0692690:three_prime_UTR 45.0%
TTGTAATGCTTGGTCTGGTG+AGG + chr4_4:61331211-61331230 Msa0692690:three_prime_UTR 45.0%
! CAGTTCTGATCTTGGCCATT+CGG + chr4_4:61331267-61331286 Msa0692690:three_prime_UTR 45.0%
!! TTATATTATAAATATTTGAA+TGG + chr4_4:61327943-61327962 Msa0692690:intron 5.0%
! TTTTACCAGCTCTGCGATCC+CGG + chr4_4:61327349-61327368 Msa0692690:CDS 50.0%
! CAACTTTTCTGCTGCAGTGC+GGG + chr4_4:61327547-61327566 Msa0692690:intron 50.0%
! AACTTTTCTGCTGCAGTGCG+GGG + chr4_4:61327548-61327567 Msa0692690:intron 50.0%
CAGTGCAAGCAATGTGGCAT+GGG - chr4_4:61327602-61327621 None:intergenic 50.0%
ATGTGGCAGTGCAAGCAATG+TGG - chr4_4:61327608-61327627 None:intergenic 50.0%
GGAAGTGAACTTGCCTGTTG+AGG + chr4_4:61328135-61328154 Msa0692690:CDS 50.0%
ATGGAATGCAGGAGAAGGAC+TGG + chr4_4:61328209-61328228 Msa0692690:CDS 50.0%
!! GGAGAAGGACTGGTTATCAC+TGG + chr4_4:61328219-61328238 Msa0692690:CDS 50.0%
!! TTTGGTGCCCGCTTTGGATT+TGG + chr4_4:61328286-61328305 Msa0692690:CDS 50.0%
CACAAAATGTTGGGGTGGAG+TGG + chr4_4:61328728-61328747 Msa0692690:intron 50.0%
TGCGGGGGTAGCTAAAATCA+CGG + chr4_4:61328775-61328794 Msa0692690:intron 50.0%
CACCTCTCTGTGACCTTTGT+TGG + chr4_4:61328966-61328985 Msa0692690:intron 50.0%
GTCCAACAAAGGTCACAGAG+AGG - chr4_4:61328971-61328990 None:intergenic 50.0%
AGAGAGAAACAGGGGAGAAG+AGG - chr4_4:61329062-61329081 None:intergenic 50.0%
CACTCGGCTCACTTTCTTGA+TGG - chr4_4:61329353-61329372 None:intergenic 50.0%
!!! GTGAGCCGAGTGTTTTAGAG+AGG + chr4_4:61329361-61329380 Msa0692690:intron 50.0%
!! CTCAAGTGCTTTGGGGATGT+GGG + chr4_4:61329481-61329500 Msa0692690:intron 50.0%
!! TCAAGTGCTTTGGGGATGTG+GGG + chr4_4:61329482-61329501 Msa0692690:intron 50.0%
ATCAGACCATCCTCCGATTG+GGG - chr4_4:61329524-61329543 None:intergenic 50.0%
GAATCAGACCATCCTCCGAT+TGG - chr4_4:61329526-61329545 None:intergenic 50.0%
! GACAGGAGCTTTGTAGCACA+AGG - chr4_4:61329622-61329641 None:intergenic 50.0%
GTGCTACAAAGCTCCTGTCA+TGG + chr4_4:61329623-61329642 Msa0692690:intron 50.0%
TACAAAGCTCCTGTCATGGC+AGG + chr4_4:61329627-61329646 Msa0692690:intron 50.0%
ACAAAGCTCCTGTCATGGCA+GGG + chr4_4:61329628-61329647 Msa0692690:intron 50.0%
GGAAGGGTTGGAGCCATTAT+AGG + chr4_4:61329656-61329675 Msa0692690:intron 50.0%
AAAAGGGATCCAATGGGAGG+GGG - chr4_4:61329768-61329787 None:intergenic 50.0%
GAAAAGGGATCCAATGGGAG+GGG - chr4_4:61329769-61329788 None:intergenic 50.0%
GGAAAAGGGATCCAATGGGA+GGG - chr4_4:61329770-61329789 None:intergenic 50.0%
AGACTGGCGGGACTGTTAAA+AGG - chr4_4:61330281-61330300 None:intergenic 50.0%
CAGTCTGAATCCCAGACCAA+GGG + chr4_4:61330295-61330314 Msa0692690:CDS 50.0%
CATCTTCACACCCTTGGTCT+GGG - chr4_4:61330308-61330327 None:intergenic 50.0%
ACATCTTCACACCCTTGGTC+TGG - chr4_4:61330309-61330328 None:intergenic 50.0%
TGCAGACATCTTCACACCCT+TGG - chr4_4:61330314-61330333 None:intergenic 50.0%
GGTTGACAGTGGAGAAGAAG+AGG + chr4_4:61330348-61330367 Msa0692690:CDS 50.0%
GATGAACAAGGTGCAACCTG+TGG + chr4_4:61330382-61330401 Msa0692690:CDS 50.0%
TTGATGTGTTCAGCCTTGGC+AGG - chr4_4:61330499-61330518 None:intergenic 50.0%
GCTTCTTGATACTGCAGCCA+GGG - chr4_4:61330534-61330553 None:intergenic 50.0%
GATTACAAAGGCAGACGCGC+CGG + chr4_4:61327199-61327218 Msa0692690:CDS 55.0%
GCAGTGCAAGCAATGTGGCA+TGG - chr4_4:61327603-61327622 None:intergenic 55.0%
AGGCGGCAGAAAACAGCACA+GGG - chr4_4:61327647-61327666 None:intergenic 55.0%
AAGGCGGCAGAAAACAGCAC+AGG - chr4_4:61327648-61327667 None:intergenic 55.0%
CCTATTGGGATAGGCTACGG+AGG - chr4_4:61328001-61328020 None:intergenic 55.0%
CCTCCGTAGCCTATCCCAAT+AGG + chr4_4:61327998-61328017 Msa0692690:intron 55.0%
!! TCAGGAGGCACTTCCTCAAC+AGG - chr4_4:61328151-61328170 None:intergenic 55.0%
!! AATGCTGGCTCGGGAAGTTC+AGG - chr4_4:61328169-61328188 None:intergenic 55.0%
TGAACTTCCCGAGCCAGCAT+TGG + chr4_4:61328168-61328187 Msa0692690:CDS 55.0%
GAACTTCCCGAGCCAGCATT+GGG + chr4_4:61328169-61328188 Msa0692690:CDS 55.0%
CTTTGCTCGGGATGGAATGC+AGG + chr4_4:61328198-61328217 Msa0692690:CDS 55.0%
TCGGGATGGAATGCAGGAGA+AGG + chr4_4:61328204-61328223 Msa0692690:CDS 55.0%
GGGGGTAGCTAAAATCACGG+AGG + chr4_4:61328778-61328797 Msa0692690:intron 55.0%
GAGATCGTGGAAGCGAAGAG+CGG - chr4_4:61328947-61328966 None:intergenic 55.0%
GTCACAGAGAGGTGAGATCG+TGG - chr4_4:61328960-61328979 None:intergenic 55.0%
CTTTGTTGGACATGCGGCTC+CGG + chr4_4:61328980-61328999 Msa0692690:intron 55.0%
CACACAGTACAGGGGAGAGA+AGG - chr4_4:61329030-61329049 None:intergenic 55.0%
! CCACATCCCCAAAGCACTTG+AGG - chr4_4:61329483-61329502 None:intergenic 55.0%
!! CCTCAAGTGCTTTGGGGATG+TGG + chr4_4:61329480-61329499 Msa0692690:intron 55.0%
GGATGTGGGGAGAAGAACCA+AGG + chr4_4:61329495-61329514 Msa0692690:intron 55.0%
! ACCAAGGTATCCCCAATCGG+AGG + chr4_4:61329511-61329530 Msa0692690:intron 55.0%
TCCTCCGATTGGGGATACCT+TGG - chr4_4:61329515-61329534 None:intergenic 55.0%
AGGTATCCCCAATCGGAGGA+TGG + chr4_4:61329515-61329534 Msa0692690:intron 55.0%
TAATGGCTCCAACCCTTCCC+TGG - chr4_4:61329655-61329674 None:intergenic 55.0%
GGGAAAAGGGATCCAATGGG+AGG - chr4_4:61329771-61329790 None:intergenic 55.0%
! TGGTCTGGGATTCAGACTGG+CGG - chr4_4:61330294-61330313 None:intergenic 55.0%
! CCTTGGTCTGGGATTCAGAC+TGG - chr4_4:61330297-61330316 None:intergenic 55.0%
CCAGTCTGAATCCCAGACCA+AGG + chr4_4:61330294-61330313 Msa0692690:CDS 55.0%
GGGTGTGAAGATGTCTGCAC+CGG + chr4_4:61330315-61330334 Msa0692690:CDS 55.0%
! GTCTGCACCGGTCAAAGAAG+AGG + chr4_4:61330327-61330346 Msa0692690:CDS 55.0%
GGCTTCTTGATACTGCAGCC+AGG - chr4_4:61330535-61330554 None:intergenic 55.0%
GCAGCATCCAAGTCCCTTTG+AGG - chr4_4:61330883-61330902 None:intergenic 55.0%
ACTAACCGGGATCGCAGAGC+TGG - chr4_4:61327357-61327376 None:intergenic 60.0%
TGCTGCAGTGCGGGGTGAAT+TGG + chr4_4:61327556-61327575 Msa0692690:intron 60.0%
GCTGCAGTGCGGGGTGAATT+GGG + chr4_4:61327557-61327576 Msa0692690:intron 60.0%
CTGCAGTGCGGGGTGAATTG+GGG + chr4_4:61327558-61327577 Msa0692690:intron 60.0%
GGTGGAGTGGATCTGCGTTG+CGG + chr4_4:61328741-61328760 Msa0692690:intron 60.0%
GTTGCGGCCATAGTGCTGTG+CGG + chr4_4:61328757-61328776 Msa0692690:intron 60.0%
TTGCGGCCATAGTGCTGTGC+GGG + chr4_4:61328758-61328777 Msa0692690:intron 60.0%
CGGAGCCGCATGTCCAACAA+AGG - chr4_4:61328982-61329001 None:intergenic 60.0%
TACAGGGGAGAGAAGGTCGC+CGG - chr4_4:61329023-61329042 None:intergenic 60.0%
TCCTGTCATGGCAGGGTCCA+GGG + chr4_4:61329635-61329654 Msa0692690:intron 60.0%
TCATGGCAGGGTCCAGGGAA+GGG + chr4_4:61329640-61329659 Msa0692690:intron 60.0%
CTTGAGTCACCCCCTCCCAT+TGG + chr4_4:61329756-61329775 Msa0692690:intron 60.0%
! GGTCTGGGATTCAGACTGGC+GGG - chr4_4:61330293-61330312 None:intergenic 60.0%
GGTGCAACCTGTGGTGCTTG+TGG + chr4_4:61330391-61330410 Msa0692690:CDS 60.0%
AGGGACTTGGATGCTGCTCG+TGG + chr4_4:61330886-61330905 Msa0692690:three_prime_UTR 60.0%
!! GCTGGCTCGGGAAGTTCAGG+AGG - chr4_4:61328166-61328185 None:intergenic 65.0%
TGCGGCCATAGTGCTGTGCG+GGG + chr4_4:61328759-61328778 Msa0692690:intron 65.0%
GCTACCCCCGCACAGCACTA+TGG - chr4_4:61328767-61328786 None:intergenic 65.0%
CTCCTGTCATGGCAGGGTCC+AGG + chr4_4:61329634-61329653 Msa0692690:intron 65.0%
TCCCTGGACCCTGCCATGAC+AGG - chr4_4:61329639-61329658 None:intergenic 65.0%
GTCATGGCAGGGTCCAGGGA+AGG + chr4_4:61329639-61329658 Msa0692690:intron 65.0%
GCGGCCATAGTGCTGTGCGG+GGG + chr4_4:61328760-61328779 Msa0692690:intron 70.0%
TTGGACATGCGGCTCCGGCG+CGG + chr4_4:61328985-61329004 Msa0692690:intron 70.0%
GGCAGGGTCCAGGGAAGGGT+TGG + chr4_4:61329644-61329663 Msa0692690:intron 70.0%
GGAGTCAGCACCAGCCGCGC+CGG - chr4_4:61329002-61329021 None:intergenic 75.0%
!! GGCGCGGCTGGTGCTGACTC+CGG + chr4_4:61329001-61329020 Msa0692690:intron 75.0%
! ACATGCGGCTCCGGCGCGGC+TGG + chr4_4:61328989-61329008 Msa0692690:intron 80.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 61327063 61331457 61327063 ID=Msa0692690;Name=Msa0692690
chr4_4 mRNA 61327063 61331457 61327063 ID=Msa0692690-mRNA-1;Parent=Msa0692690;Name=Msa0692690-mRNA-1;_AED=0.14;_eAED=0.14;_QI=82|1|1|1|0.66|0.57|7|581|257
chr4_4 exon 61327063 61327244 61327063 ID=Msa0692690-mRNA-1:exon:16913;Parent=Msa0692690-mRNA-1
chr4_4 exon 61327338 61327370 61327338 ID=Msa0692690-mRNA-1:exon:16914;Parent=Msa0692690-mRNA-1
chr4_4 exon 61328092 61328320 61328092 ID=Msa0692690-mRNA-1:exon:16915;Parent=Msa0692690-mRNA-1
chr4_4 exon 61330055 61330187 61330055 ID=Msa0692690-mRNA-1:exon:16916;Parent=Msa0692690-mRNA-1
chr4_4 exon 61330289 61330621 61330289 ID=Msa0692690-mRNA-1:exon:16917;Parent=Msa0692690-mRNA-1
chr4_4 exon 61330832 61330947 61330832 ID=Msa0692690-mRNA-1:exon:16918;Parent=Msa0692690-mRNA-1
chr4_4 exon 61331047 61331457 61331047 ID=Msa0692690-mRNA-1:exon:16919;Parent=Msa0692690-mRNA-1
chr4_4 five_prime_UTR 61327063 61327144 61327063 ID=Msa0692690-mRNA-1:five_prime_utr;Parent=Msa0692690-mRNA-1
chr4_4 CDS 61327145 61327244 61327145 ID=Msa0692690-mRNA-1:cds;Parent=Msa0692690-mRNA-1
chr4_4 CDS 61327338 61327370 61327338 ID=Msa0692690-mRNA-1:cds;Parent=Msa0692690-mRNA-1
chr4_4 CDS 61328092 61328320 61328092 ID=Msa0692690-mRNA-1:cds;Parent=Msa0692690-mRNA-1
chr4_4 CDS 61330055 61330187 61330055 ID=Msa0692690-mRNA-1:cds;Parent=Msa0692690-mRNA-1
chr4_4 CDS 61330289 61330567 61330289 ID=Msa0692690-mRNA-1:cds;Parent=Msa0692690-mRNA-1
chr4_4 three_prime_UTR 61330568 61330621 61330568 ID=Msa0692690-mRNA-1:three_prime_utr;Parent=Msa0692690-mRNA-1
chr4_4 three_prime_UTR 61330832 61330947 61330832 ID=Msa0692690-mRNA-1:three_prime_utr;Parent=Msa0692690-mRNA-1
chr4_4 three_prime_UTR 61331047 61331457 61331047 ID=Msa0692690-mRNA-1:three_prime_utr;Parent=Msa0692690-mRNA-1
Gene Sequence

>Msa0692690

ATGGAAGGAATGGCACAGCTCCCAGTACCTCGAACTGTTGAAGAAGTTTTTAGCGATTACAAAGGCAGACGCGCCGGTTTGATCAAAGCTCTCACTACTGACGTTGAAAAGTTTTACCAGCTCTGCGATCCCGAAAAGGAGAATTTGTGCCTCTATGGGTTTCCAAATGAAACATGGGAAGTGAACTTGCCTGTTGAGGAAGTGCCTCCTGAACTTCCCGAGCCAGCATTGGGTATAAACTTTGCTCGGGATGGAATGCAGGAGAAGGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGCTGCTCGCTGTTGCTTTCTATTTTGGTGCCCGCTTTGGATTTGGTAAGAATGATAGGAAAAGGCTTTTTCAGATGATAAATGATCTGCCCACAGTCTTTGAGCTTGCAACAGGAACTGCTAAGCAATCAAAGGACCAACTGACTGCTCACAACAATGGTAGTAATAGCAAATACAAATCAAGTGGAAAGTCCCGCCAGTCTGAATCCCAGACCAAGGGTGTGAAGATGTCTGCACCGGTCAAAGAAGAGGTTGACAGTGGAGAAGAAGAGGAAGAAGATGATGATGAACAAGGTGCAACCTGTGGTGCTTGTGGTGATAATTATGGCACCGATGAATTCTGGATCTGTTGTGATATGTGCGAGAAATGGTTCCATGGTAAATGTGTTAAAATTACTCCTGCCAAGGCTGAACACATCAAGCAATACAAGTGCCCTGGCTGCAGTATCAAGAAGCCAAGAATTGGATAG
Protein sequence

>Msa0692690

MEGMAQLPVPRTVEEVFSDYKGRRAGLIKALTTDVEKFYQLCDPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNDRKRLFQMINDLPTVFELATGTAKQSKDQLTAHNNGSNSKYKSSGKSRQSESQTKGVKMSAPVKEEVDSGEEEEEDDDEQGATCGACGDNYGTDEFWICCDMCEKWFHGKCVKITPAKAEHIKQYKCPGCSIKKPRIG*