AlfalfaGEDB | Msa0692690

M. sativa cultivar zhongmu-4 / Msa0692690

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006417 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0033554 GO:0034248 GO:0034250 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:2000112
PFAM: PF12165.11

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0692690	Q40359.1	99.222	257	2	0	1	257	1	257	0.0	532

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0692690	sp\|Q40359\|ALFIN_MEDSA	99.222	257	2	0	1	257	1	257	0.0	532

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0692690	A0A072UTR5	99.222	257	1	1	1	257	1	256	0.0	528

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0692690	TF	Alfin-like

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0692690	MtrunA17_Chr4g0076771	99.222	257	1	1	1	257	1	256	0.0	528
Msa0692690	MtrunA17_Chr8g0343441	71.311	244	70	0	10	253	9	252	2.26e-111	321
Msa0692690	MtrunA17_Chr1g0150821	67.589	253	75	2	10	255	10	262	3.47e-105	305
Msa0692690	MtrunA17_Chr2g0300241	68.548	248	69	4	10	255	12	252	2.59e-104	303
Msa0692690	MtrunA17_Chr2g0329821	67.194	253	77	2	1	253	1	247	2.95e-103	300
Msa0692690	MtrunA17_Chr7g0242511	62.302	252	84	5	4	255	1	241	1.29e-93	275
Msa0692690	MtrunA17_Chr4g0006381	61.508	252	86	5	4	255	1	241	2.72e-90	267

Showing 1 to 7 of 7 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0692690	AT2G02470.1	78.764	259	47	5	1	255	1	255	3.75e-129	366
Msa0692690	AT1G14510.1	78.656	253	49	3	1	253	1	248	1.01e-126	360
Msa0692690	AT2G02470.2	76.357	258	46	5	1	255	1	246	4.07e-123	350
Msa0692690	AT5G20510.1	67.181	259	81	3	1	255	1	259	1.84e-110	319
Msa0692690	AT3G42790.1	66.667	255	79	3	1	255	1	249	8.30e-110	317
Msa0692690	AT5G05610.2	63.347	251	79	5	5	255	3	240	3.02e-95	280
Msa0692690	AT5G05610.1	63.347	251	79	5	5	255	3	240	3.02e-95	280
Msa0692690	AT5G26210.1	67.331	251	72	3	10	255	9	254	3.57e-93	275
Msa0692690	AT3G11200.1	63.137	255	84	4	1	255	1	245	1.12e-88	263
Msa0692690	AT5G20510.2	66.512	215	68	3	45	255	4	218	3.89e-86	256

Showing 1 to 10 of 13 entries

Previous1 2Next

Find 116 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTCTTCAACAGTTCG+AGG	0.455840	4_4:-61327172	None:intergenic
AAAGAAAAGCGAAAATCTAG+TGG	0.565767	4_4:+61327091	Msa0692690:five_prime_UTR
AAATTACACTGATGTCCGAA+TGG	0.630833	4_4:-61331282	None:intergenic
AAATTGAAATTGAGGATGGA+AGG	0.531943	4_4:+61327130	Msa0692690:exon
AACAGCCTCGAGGAAATTTG+AGG	0.509623	4_4:+61331042	Msa0692690:intron
AAGAAAAGCGAAAATCTAGT+GGG	0.627706	4_4:+61327092	Msa0692690:five_prime_UTR
AAGGAGAATTTGTGCCTCTA+TGG	0.272744	4_4:+61328094	Msa0692690:CDS
AATAGCAAATACAAATCAAG+TGG	0.552353	4_4:+61330161	Msa0692690:CDS
AATCCTGAAATTATCACTCT+AGG	0.460307	4_4:-61331395	None:intergenic
AATCTAAGCATTCAAACAAT+TGG	0.359158	4_4:-61331084	None:intergenic

Showing 1 to 10 of 116 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAAGCGAAAATCTAG+TGG	+	chr4_4:61327091-61327110	Msa0692690:five_prime_UTR	30.0%
AAGAAAAGCGAAAATCTAGT+GGG	+	chr4_4:61327092-61327111	Msa0692690:five_prime_UTR	30.0%
GTTGAAATTGAAATTGAGGA+TGG	+	chr4_4:61327126-61327145	Msa0692690:exon	30.0%
AAATTGAAATTGAGGATGGA+AGG	+	chr4_4:61327130-61327149	Msa0692690:exon	30.0%
AAGAAAAAAAGGAAAACCCT+AGG	-	chr4_4:61327444-61327463	None:intergenic	30.0%
CCAACTTCAAAAGATAACAA+AGG	-	chr4_4:61327852-61327871	None:intergenic	30.0%
ATCCATAACTTTCTCAACAA+GGG	-	chr4_4:61328619-61328638	None:intergenic	30.0%
AATCCATAACTTTCTCAACA+AGG	-	chr4_4:61328620-61328639	None:intergenic	30.0%
CTTATTCTTTCTCATGACTA+CGG	+	chr4_4:61328692-61328711	Msa0692690:intron	30.0%
TTTCTCTCTTCAATAGACTT+TGG	+	chr4_4:61329073-61329092	Msa0692690:intron	30.0%

Showing 1 to 10 of 364 entries

Previous1 2 3 4 5…37Next

Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	61327063	61331457	61327063	ID=Msa0692690;Name=Msa0692690
chr4_4	mRNA	61327063	61331457	61327063	ID=Msa0692690-mRNA-1;Parent=Msa0692690;Name=Msa0692690-mRNA-1;_AED=0.14;_eAED=0.14;_QI=82\|1\|1\|1\|0.66\|0.57\|7\|581\|257
chr4_4	exon	61327063	61327244	61327063	ID=Msa0692690-mRNA-1:exon:16913;Parent=Msa0692690-mRNA-1
chr4_4	exon	61327338	61327370	61327338	ID=Msa0692690-mRNA-1:exon:16914;Parent=Msa0692690-mRNA-1
chr4_4	exon	61328092	61328320	61328092	ID=Msa0692690-mRNA-1:exon:16915;Parent=Msa0692690-mRNA-1
chr4_4	exon	61330055	61330187	61330055	ID=Msa0692690-mRNA-1:exon:16916;Parent=Msa0692690-mRNA-1
chr4_4	exon	61330289	61330621	61330289	ID=Msa0692690-mRNA-1:exon:16917;Parent=Msa0692690-mRNA-1
chr4_4	exon	61330832	61330947	61330832	ID=Msa0692690-mRNA-1:exon:16918;Parent=Msa0692690-mRNA-1
chr4_4	exon	61331047	61331457	61331047	ID=Msa0692690-mRNA-1:exon:16919;Parent=Msa0692690-mRNA-1
chr4_4	five_prime_UTR	61327063	61327144	61327063	ID=Msa0692690-mRNA-1:five_prime_utr;Parent=Msa0692690-mRNA-1
chr4_4	CDS	61327145	61327244	61327145	ID=Msa0692690-mRNA-1:cds;Parent=Msa0692690-mRNA-1
chr4_4	CDS	61327338	61327370	61327338	ID=Msa0692690-mRNA-1:cds;Parent=Msa0692690-mRNA-1
chr4_4	CDS	61328092	61328320	61328092	ID=Msa0692690-mRNA-1:cds;Parent=Msa0692690-mRNA-1
chr4_4	CDS	61330055	61330187	61330055	ID=Msa0692690-mRNA-1:cds;Parent=Msa0692690-mRNA-1
chr4_4	CDS	61330289	61330567	61330289	ID=Msa0692690-mRNA-1:cds;Parent=Msa0692690-mRNA-1
chr4_4	three_prime_UTR	61330568	61330621	61330568	ID=Msa0692690-mRNA-1:three_prime_utr;Parent=Msa0692690-mRNA-1
chr4_4	three_prime_UTR	61330832	61330947	61330832	ID=Msa0692690-mRNA-1:three_prime_utr;Parent=Msa0692690-mRNA-1
chr4_4	three_prime_UTR	61331047	61331457	61331047	ID=Msa0692690-mRNA-1:three_prime_utr;Parent=Msa0692690-mRNA-1

Gene Sequence

>Msa0692690

ATGGAAGGAATGGCACAGCTCCCAGTACCTCGAACTGTTGAAGAAGTTTTTAGCGATTACAAAGGCAGACGCGCCGGTTTGATCAAAGCTCTCACTACTGACGTTGAAAAGTTTTACCAGCTCTGCGATCCCGAAAAGGAGAATTTGTGCCTCTATGGGTTTCCAAATGAAACATGGGAAGTGAACTTGCCTGTTGAGGAAGTGCCTCCTGAACTTCCCGAGCCAGCATTGGGTATAAACTTTGCTCGGGATGGAATGCAGGAGAAGGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGCTGCTCGCTGTTGCTTTCTATTTTGGTGCCCGCTTTGGATTTGGTAAGAATGATAGGAAAAGGCTTTTTCAGATGATAAATGATCTGCCCACAGTCTTTGAGCTTGCAACAGGAACTGCTAAGCAATCAAAGGACCAACTGACTGCTCACAACAATGGTAGTAATAGCAAATACAAATCAAGTGGAAAGTCCCGCCAGTCTGAATCCCAGACCAAGGGTGTGAAGATGTCTGCACCGGTCAAAGAAGAGGTTGACAGTGGAGAAGAAGAGGAAGAAGATGATGATGAACAAGGTGCAACCTGTGGTGCTTGTGGTGATAATTATGGCACCGATGAATTCTGGATCTGTTGTGATATGTGCGAGAAATGGTTCCATGGTAAATGTGTTAAAATTACTCCTGCCAAGGCTGAACACATCAAGCAATACAAGTGCCCTGGCTGCAGTATCAAGAAGCCAAGAATTGGATAG

Protein sequence

>Msa0692690

MEGMAQLPVPRTVEEVFSDYKGRRAGLIKALTTDVEKFYQLCDPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNDRKRLFQMINDLPTVFELATGTAKQSKDQLTAHNNGSNSKYKSSGKSRQSESQTKGVKMSAPVKEEVDSGEEEEEDDDEQGATCGACGDNYGTDEFWICCDMCEKWFHGKCVKITPAKAEHIKQYKCPGCSIKKPRIG*