Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693510 | KEH30840.1 | 93.706 | 143 | 4 | 1 | 1 | 143 | 47 | 184 | 3.71e-92 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693510 | sp|Q6X7K0|WOX1_ARATH | 54.472 | 123 | 44 | 3 | 16 | 135 | 74 | 187 | 3.97e-35 | 127 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693510 | A0A072UYB2 | 93.706 | 143 | 4 | 1 | 1 | 143 | 47 | 184 | 1.77e-92 | 275 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0693510 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693510 | MtrunA17_Chr4g0043891 | 92.800 | 125 | 2 | 2 | 11 | 135 | 1 | 118 | 2.50e-78 | 232 |
| Msa0693510 | MtrunA17_Chr8g0392991 | 60.345 | 116 | 35 | 3 | 16 | 131 | 94 | 198 | 3.41e-37 | 130 |
| Msa0693510 | MtrunA17_Chr7g0238431 | 71.429 | 70 | 20 | 0 | 11 | 80 | 1 | 70 | 1.16e-31 | 112 |
| Msa0693510 | MtrunA17_Chr5g0436661 | 39.552 | 134 | 71 | 2 | 18 | 141 | 33 | 166 | 3.40e-28 | 102 |
| Msa0693510 | MtrunA17_Chr5g0405351 | 67.164 | 67 | 21 | 1 | 14 | 79 | 26 | 92 | 2.13e-27 | 103 |
| Msa0693510 | MtrunA17_Chr1g0153171 | 68.750 | 64 | 20 | 0 | 17 | 80 | 89 | 152 | 1.07e-26 | 100 |
| Msa0693510 | MtrunA17_Chr3g0125111 | 84.615 | 52 | 8 | 0 | 29 | 80 | 91 | 142 | 1.70e-26 | 97.4 |
| Msa0693510 | MtrunA17_Chr8g0385441 | 84.615 | 52 | 8 | 0 | 29 | 80 | 93 | 144 | 1.74e-26 | 97.4 |
| Msa0693510 | MtrunA17_Chr4g0031341 | 66.667 | 63 | 21 | 0 | 18 | 80 | 25 | 87 | 5.33e-26 | 98.6 |
| Msa0693510 | MtrunA17_Chr7g0223471 | 46.377 | 69 | 37 | 0 | 13 | 81 | 42 | 110 | 1.11e-18 | 80.9 |
| Msa0693510 | MtrunA17_Chr1g0212511 | 46.341 | 82 | 38 | 1 | 18 | 99 | 85 | 160 | 4.80e-18 | 77.8 |
| Msa0693510 | MtrunA17_Chr2g0283141 | 44.928 | 69 | 38 | 0 | 13 | 81 | 50 | 118 | 6.29e-18 | 79.0 |
| Msa0693510 | MtrunA17_Chr3g0144021 | 42.623 | 61 | 35 | 0 | 18 | 78 | 82 | 142 | 1.01e-13 | 65.5 |
| Msa0693510 | MtrunA17_Chr6g0460691 | 39.474 | 76 | 46 | 0 | 17 | 92 | 31 | 106 | 2.57e-13 | 65.5 |
| Msa0693510 | MtrunA17_Chr7g0222981 | 36.559 | 93 | 49 | 1 | 18 | 110 | 68 | 150 | 6.68e-13 | 62.8 |
| Msa0693510 | MtrunA17_Chr7g0254251 | 45.098 | 51 | 28 | 0 | 17 | 67 | 27 | 77 | 4.77e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693510 | AT3G18010.1 | 54.472 | 123 | 44 | 3 | 16 | 135 | 74 | 187 | 4.04e-36 | 127 |
| Msa0693510 | AT2G28610.1 | 65.714 | 70 | 24 | 0 | 11 | 80 | 1 | 70 | 5.52e-30 | 108 |
| Msa0693510 | AT5G59340.1 | 64.706 | 68 | 24 | 0 | 16 | 83 | 12 | 79 | 1.44e-27 | 103 |
| Msa0693510 | AT3G11260.1 | 48.421 | 95 | 39 | 1 | 18 | 102 | 24 | 118 | 9.56e-27 | 99.0 |
| Msa0693510 | AT2G17950.1 | 60.759 | 79 | 30 | 1 | 14 | 91 | 34 | 112 | 2.20e-26 | 100 |
| Msa0693510 | AT1G46480.2 | 63.768 | 69 | 24 | 1 | 12 | 80 | 85 | 152 | 3.89e-26 | 97.8 |
| Msa0693510 | AT2G01500.1 | 74.545 | 55 | 14 | 0 | 18 | 72 | 61 | 115 | 8.62e-26 | 98.6 |
| Msa0693510 | AT1G46480.1 | 63.768 | 69 | 24 | 1 | 12 | 80 | 85 | 152 | 2.02e-25 | 97.4 |
| Msa0693510 | AT5G05770.1 | 59.375 | 64 | 26 | 0 | 18 | 81 | 29 | 92 | 1.64e-23 | 89.0 |
| Msa0693510 | AT2G33880.1 | 44.286 | 70 | 39 | 0 | 13 | 82 | 50 | 119 | 1.69e-17 | 77.8 |
| Msa0693510 | AT2G33880.2 | 44.286 | 70 | 39 | 0 | 13 | 82 | 50 | 119 | 2.42e-17 | 77.4 |
| Msa0693510 | AT5G45980.1 | 44.776 | 67 | 37 | 0 | 13 | 79 | 50 | 116 | 4.15e-16 | 73.6 |
| Msa0693510 | AT4G35550.1 | 49.180 | 61 | 31 | 0 | 18 | 78 | 99 | 159 | 1.16e-15 | 72.0 |
| Msa0693510 | AT1G20700.2 | 45.000 | 60 | 33 | 0 | 18 | 77 | 33 | 92 | 3.74e-14 | 65.5 |
| Msa0693510 | AT1G20700.3 | 45.000 | 60 | 33 | 0 | 18 | 77 | 95 | 154 | 1.31e-13 | 65.5 |
| Msa0693510 | AT1G20700.1 | 45.000 | 60 | 33 | 0 | 18 | 77 | 95 | 154 | 1.45e-13 | 65.5 |
| Msa0693510 | AT3G03660.1 | 49.057 | 53 | 27 | 0 | 17 | 69 | 32 | 84 | 3.20e-13 | 65.1 |
| Msa0693510 | AT3G03660.2 | 49.057 | 53 | 27 | 0 | 17 | 69 | 32 | 84 | 5.09e-13 | 64.7 |
| Msa0693510 | AT3G03660.4 | 49.057 | 53 | 27 | 0 | 17 | 69 | 32 | 84 | 7.81e-13 | 64.3 |
| Msa0693510 | AT3G03660.3 | 49.057 | 53 | 27 | 0 | 17 | 69 | 32 | 84 | 1.02e-12 | 64.3 |
| Msa0693510 | AT5G17810.1 | 43.396 | 53 | 30 | 0 | 17 | 69 | 20 | 72 | 2.19e-11 | 60.1 |
| Msa0693510 | AT5G17810.2 | 43.396 | 53 | 30 | 0 | 17 | 69 | 20 | 72 | 2.19e-11 | 60.1 |
| Msa0693510 | AT5G17810.3 | 43.396 | 53 | 30 | 0 | 17 | 69 | 20 | 72 | 2.22e-11 | 60.1 |
Find 29 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCTCTCGCCTTGTGATTC+TGG | 0.194023 | 4_4:-62451323 | None:intergenic |
| GCTTCGCAGCTTCGACAATT+TGG | 0.206061 | 4_4:+62451267 | Msa0693510:CDS |
| ATTTCTCTTGTCTTTGTTGA+TGG | 0.263889 | 4_4:+62452015 | Msa0693510:CDS |
| AGAGAAAGAGAAGTACGTTA+TGG | 0.359866 | 4_4:+62451410 | Msa0693510:CDS |
| CGACAATTTGGAAAGATTGA+AGG | 0.396848 | 4_4:+62451279 | Msa0693510:CDS |
| GAGAAAGAGAAGTACGTTAT+GGG | 0.401887 | 4_4:+62451411 | Msa0693510:CDS |
| GAAGCTGCGAAGCTATTTGT+TGG | 0.428703 | 4_4:-62451257 | None:intergenic |
| CTTGCCTATACAATTCTTCA+AGG | 0.428836 | 4_4:-62451206 | None:intergenic |
| TAGTCCTTGAAGAATTGTAT+AGG | 0.431151 | 4_4:+62451202 | Msa0693510:CDS |
| GTTGGACTCCACCTTGAACT+TGG | 0.444756 | 4_4:-62451165 | None:intergenic |
| CTTGAGATGGAGGAAACAAT+TGG | 0.464032 | 4_4:+62451363 | Msa0693510:CDS |
| TGCATCCTCAACCAAGTTCA+AGG | 0.472729 | 4_4:+62451154 | Msa0693510:CDS |
| CTCCACCTTGAACTTGGTTG+AGG | 0.502185 | 4_4:-62451159 | None:intergenic |
| TGTTGGATTTGTTCAGCTGA+TGG | 0.503667 | 4_4:-62451240 | None:intergenic |
| TTGTTCACTGCAGTTTGAAG+TGG | 0.506780 | 4_4:-62451979 | None:intergenic |
| TCAAGGACTAGTAATTGAAC+TGG | 0.509163 | 4_4:-62451189 | None:intergenic |
| GAAGCGTCGTCGCCTTGAGA+TGG | 0.530642 | 4_4:+62451350 | Msa0693510:CDS |
| ACTAGTAATTGAACTGGTGT+TGG | 0.537149 | 4_4:-62451183 | None:intergenic |
| CTTGAAGAATTGTATAGGCA+AGG | 0.540070 | 4_4:+62451207 | Msa0693510:CDS |
| TCAGAAAAGCAAGAAGCTGC+AGG | 0.540109 | 4_4:+62451438 | Msa0693510:CDS |
| CAATTGTTTCCTCCATCTCA+AGG | 0.548253 | 4_4:-62451362 | None:intergenic |
| GCGTCGTCGCCTTGAGATGG+AGG | 0.576407 | 4_4:+62451353 | Msa0693510:CDS |
| TTGAAGAATTGTATAGGCAA+GGG | 0.590766 | 4_4:+62451208 | Msa0693510:CDS |
| ACAGCTCATGCAGCTGAGCA+AGG | 0.595931 | 4_4:+62451117 | None:intergenic |
| AAACTGCAGTGAACAAGCAG+AGG | 0.632631 | 4_4:+62451986 | Msa0693510:CDS |
| AGTTAAAGAGACAAAGAAGT+GGG | 0.667079 | 4_4:+62451953 | Msa0693510:CDS |
| CTATTGGTTCCAGAATCACA+AGG | 0.685006 | 4_4:+62451314 | Msa0693510:CDS |
| GAGTTAAAGAGACAAAGAAG+TGG | 0.689037 | 4_4:+62451952 | Msa0693510:CDS |
| ATCCTCAACCAAGTTCAAGG+TGG | 0.762805 | 4_4:+62451157 | Msa0693510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTGTTTATTCAATTTAA+TGG | + | chr4_4:62451800-62451819 | Msa0693510:intron | 15.0% |
| !!! | ATTGCTATTTTTGAAATTTT+AGG | + | chr4_4:62451831-62451850 | Msa0693510:intron | 15.0% |
| !!! | TTGTTGTTTATTCAATTTAA+TGG | + | chr4_4:62451800-62451819 | Msa0693510:intron | 15.0% |
| !!! | ATTGCTATTTTTGAAATTTT+AGG | + | chr4_4:62451831-62451850 | Msa0693510:intron | 15.0% |
| !! | TCATGAGTGAAATATAATAT+AGG | - | chr4_4:62451522-62451541 | None:intergenic | 20.0% |
| !!! | AAAGATAAATAGCTTTTGTA+AGG | + | chr4_4:62451576-62451595 | Msa0693510:intron | 20.0% |
| !! | AAGAAAAAAAATGACCAAAT+GGG | - | chr4_4:62451640-62451659 | None:intergenic | 20.0% |
| !!! | CTAAAATCTCTAAAATTGTA+GGG | - | chr4_4:62451672-62451691 | None:intergenic | 20.0% |
| !!! | ACTATACTTTTAAAGATGTT+AGG | - | chr4_4:62451755-62451774 | None:intergenic | 20.0% |
| !! | TCATGAGTGAAATATAATAT+AGG | - | chr4_4:62451522-62451541 | None:intergenic | 20.0% |
| !!! | AAAGATAAATAGCTTTTGTA+AGG | + | chr4_4:62451576-62451595 | Msa0693510:intron | 20.0% |
| !! | AAGAAAAAAAATGACCAAAT+GGG | - | chr4_4:62451640-62451659 | None:intergenic | 20.0% |
| !!! | CTAAAATCTCTAAAATTGTA+GGG | - | chr4_4:62451672-62451691 | None:intergenic | 20.0% |
| !!! | ACTATACTTTTAAAGATGTT+AGG | - | chr4_4:62451755-62451774 | None:intergenic | 20.0% |
| ! | AAGGAAAAAATGTGTTCTAT+TGG | + | chr4_4:62451298-62451317 | Msa0693510:CDS | 25.0% |
| ! | TACAGCTAGATATTATCTTT+AGG | + | chr4_4:62451463-62451482 | Msa0693510:intron | 25.0% |
| ! | ACAGCTAGATATTATCTTTA+GGG | + | chr4_4:62451464-62451483 | Msa0693510:intron | 25.0% |
| !!! | ATTATCTTTAGGGTTATTCA+AGG | + | chr4_4:62451474-62451493 | Msa0693510:intron | 25.0% |
| !! | TAAATAGCTTTTGTAAGGAT+CGG | + | chr4_4:62451581-62451600 | Msa0693510:intron | 25.0% |
| ! | AAATAACAATTTAGCCCATT+TGG | + | chr4_4:62451623-62451642 | Msa0693510:intron | 25.0% |
| ! | GAAGAAAAAAAATGACCAAA+TGG | - | chr4_4:62451641-62451660 | None:intergenic | 25.0% |
| !!! | CCTAAAATCTCTAAAATTGT+AGG | - | chr4_4:62451673-62451692 | None:intergenic | 25.0% |
| !!! | CCTACAATTTTAGAGATTTT+AGG | + | chr4_4:62451670-62451689 | Msa0693510:intron | 25.0% |
| ! | TCAATATGATATTCTTGCAT+AGG | + | chr4_4:62451724-62451743 | Msa0693510:intron | 25.0% |
| !! | ATGTATATGAGTTGAATTTG+TGG | + | chr4_4:62451900-62451919 | Msa0693510:intron | 25.0% |
| ! | AAGGAAAAAATGTGTTCTAT+TGG | + | chr4_4:62451298-62451317 | Msa0693510:CDS | 25.0% |
| ! | TACAGCTAGATATTATCTTT+AGG | + | chr4_4:62451463-62451482 | Msa0693510:intron | 25.0% |
| ! | ACAGCTAGATATTATCTTTA+GGG | + | chr4_4:62451464-62451483 | Msa0693510:intron | 25.0% |
| !!! | ATTATCTTTAGGGTTATTCA+AGG | + | chr4_4:62451474-62451493 | Msa0693510:intron | 25.0% |
| !! | TAAATAGCTTTTGTAAGGAT+CGG | + | chr4_4:62451581-62451600 | Msa0693510:intron | 25.0% |
| ! | AAATAACAATTTAGCCCATT+TGG | + | chr4_4:62451623-62451642 | Msa0693510:intron | 25.0% |
| ! | GAAGAAAAAAAATGACCAAA+TGG | - | chr4_4:62451641-62451660 | None:intergenic | 25.0% |
| !!! | CCTAAAATCTCTAAAATTGT+AGG | - | chr4_4:62451673-62451692 | None:intergenic | 25.0% |
| !!! | CCTACAATTTTAGAGATTTT+AGG | + | chr4_4:62451670-62451689 | Msa0693510:intron | 25.0% |
| ! | TCAATATGATATTCTTGCAT+AGG | + | chr4_4:62451724-62451743 | Msa0693510:intron | 25.0% |
| !! | ATGTATATGAGTTGAATTTG+TGG | + | chr4_4:62451900-62451919 | Msa0693510:intron | 25.0% |
| TAGTCCTTGAAGAATTGTAT+AGG | + | chr4_4:62451202-62451221 | Msa0693510:CDS | 30.0% | |
| TTGAAGAATTGTATAGGCAA+GGG | + | chr4_4:62451208-62451227 | Msa0693510:CDS | 30.0% | |
| ! | GTTATTCAAGGTTCTTTTAG+TGG | + | chr4_4:62451486-62451505 | Msa0693510:intron | 30.0% |
| ACACACACTTCAAATTGTAA+GGG | - | chr4_4:62451870-62451889 | None:intergenic | 30.0% | |
| AGTTAAAGAGACAAAGAAGT+GGG | + | chr4_4:62451953-62451972 | Msa0693510:CDS | 30.0% | |
| TAGTCCTTGAAGAATTGTAT+AGG | + | chr4_4:62451202-62451221 | Msa0693510:CDS | 30.0% | |
| TTGAAGAATTGTATAGGCAA+GGG | + | chr4_4:62451208-62451227 | Msa0693510:CDS | 30.0% | |
| ! | GTTATTCAAGGTTCTTTTAG+TGG | + | chr4_4:62451486-62451505 | Msa0693510:intron | 30.0% |
| ACACACACTTCAAATTGTAA+GGG | - | chr4_4:62451870-62451889 | None:intergenic | 30.0% | |
| AGTTAAAGAGACAAAGAAGT+GGG | + | chr4_4:62451953-62451972 | Msa0693510:CDS | 30.0% | |
| ACTAGTAATTGAACTGGTGT+TGG | - | chr4_4:62451186-62451205 | None:intergenic | 35.0% | |
| ! | TCAAGGACTAGTAATTGAAC+TGG | - | chr4_4:62451192-62451211 | None:intergenic | 35.0% |
| CTTGCCTATACAATTCTTCA+AGG | - | chr4_4:62451209-62451228 | None:intergenic | 35.0% | |
| CTTGAAGAATTGTATAGGCA+AGG | + | chr4_4:62451207-62451226 | Msa0693510:CDS | 35.0% | |
| CGACAATTTGGAAAGATTGA+AGG | + | chr4_4:62451279-62451298 | Msa0693510:CDS | 35.0% | |
| ! | AGAGAAAGAGAAGTACGTTA+TGG | + | chr4_4:62451410-62451429 | Msa0693510:CDS | 35.0% |
| ! | GAGAAAGAGAAGTACGTTAT+GGG | + | chr4_4:62451411-62451430 | Msa0693510:CDS | 35.0% |
| CACACACACTTCAAATTGTA+AGG | - | chr4_4:62451871-62451890 | None:intergenic | 35.0% | |
| ! | TGAGTTGAATTTGTGGTGAT+TGG | + | chr4_4:62451907-62451926 | Msa0693510:intron | 35.0% |
| !! | GATTGGATTTTGAAAGAGAC+AGG | + | chr4_4:62451924-62451943 | Msa0693510:intron | 35.0% |
| GAGTTAAAGAGACAAAGAAG+TGG | + | chr4_4:62451952-62451971 | Msa0693510:CDS | 35.0% | |
| ACTAGTAATTGAACTGGTGT+TGG | - | chr4_4:62451186-62451205 | None:intergenic | 35.0% | |
| ! | TCAAGGACTAGTAATTGAAC+TGG | - | chr4_4:62451192-62451211 | None:intergenic | 35.0% |
| CTTGCCTATACAATTCTTCA+AGG | - | chr4_4:62451209-62451228 | None:intergenic | 35.0% | |
| CTTGAAGAATTGTATAGGCA+AGG | + | chr4_4:62451207-62451226 | Msa0693510:CDS | 35.0% | |
| CGACAATTTGGAAAGATTGA+AGG | + | chr4_4:62451279-62451298 | Msa0693510:CDS | 35.0% | |
| ! | AGAGAAAGAGAAGTACGTTA+TGG | + | chr4_4:62451410-62451429 | Msa0693510:CDS | 35.0% |
| ! | GAGAAAGAGAAGTACGTTAT+GGG | + | chr4_4:62451411-62451430 | Msa0693510:CDS | 35.0% |
| CACACACACTTCAAATTGTA+AGG | - | chr4_4:62451871-62451890 | None:intergenic | 35.0% | |
| ! | TGAGTTGAATTTGTGGTGAT+TGG | + | chr4_4:62451907-62451926 | Msa0693510:intron | 35.0% |
| !! | GATTGGATTTTGAAAGAGAC+AGG | + | chr4_4:62451924-62451943 | Msa0693510:intron | 35.0% |
| GAGTTAAAGAGACAAAGAAG+TGG | + | chr4_4:62451952-62451971 | Msa0693510:CDS | 35.0% | |
| ! | TGTTGGATTTGTTCAGCTGA+TGG | - | chr4_4:62451243-62451262 | None:intergenic | 40.0% |
| !! | CTATTGGTTCCAGAATCACA+AGG | + | chr4_4:62451314-62451333 | Msa0693510:CDS | 40.0% |
| CAATTGTTTCCTCCATCTCA+AGG | - | chr4_4:62451365-62451384 | None:intergenic | 40.0% | |
| CTTGAGATGGAGGAAACAAT+TGG | + | chr4_4:62451363-62451382 | Msa0693510:CDS | 40.0% | |
| !! | TGGATTTTGAAAGAGACAGG+TGG | + | chr4_4:62451927-62451946 | Msa0693510:intron | 40.0% |
| !! | ATTTTGAAAGAGACAGGTGG+TGG | + | chr4_4:62451930-62451949 | Msa0693510:intron | 40.0% |
| TTGTTCACTGCAGTTTGAAG+TGG | - | chr4_4:62451982-62452001 | None:intergenic | 40.0% | |
| ! | TGTTGGATTTGTTCAGCTGA+TGG | - | chr4_4:62451243-62451262 | None:intergenic | 40.0% |
| !! | CTATTGGTTCCAGAATCACA+AGG | + | chr4_4:62451314-62451333 | Msa0693510:CDS | 40.0% |
| CAATTGTTTCCTCCATCTCA+AGG | - | chr4_4:62451365-62451384 | None:intergenic | 40.0% | |
| CTTGAGATGGAGGAAACAAT+TGG | + | chr4_4:62451363-62451382 | Msa0693510:CDS | 40.0% | |
| !! | TGGATTTTGAAAGAGACAGG+TGG | + | chr4_4:62451927-62451946 | Msa0693510:intron | 40.0% |
| !! | ATTTTGAAAGAGACAGGTGG+TGG | + | chr4_4:62451930-62451949 | Msa0693510:intron | 40.0% |
| TTGTTCACTGCAGTTTGAAG+TGG | - | chr4_4:62451982-62452001 | None:intergenic | 40.0% | |
| TGCATCCTCAACCAAGTTCA+AGG | + | chr4_4:62451154-62451173 | Msa0693510:CDS | 45.0% | |
| ATCCTCAACCAAGTTCAAGG+TGG | + | chr4_4:62451157-62451176 | Msa0693510:CDS | 45.0% | |
| GAAGCTGCGAAGCTATTTGT+TGG | - | chr4_4:62451260-62451279 | None:intergenic | 45.0% | |
| TCAGAAAAGCAAGAAGCTGC+AGG | + | chr4_4:62451438-62451457 | Msa0693510:CDS | 45.0% | |
| AAACTGCAGTGAACAAGCAG+AGG | + | chr4_4:62451986-62452005 | Msa0693510:CDS | 45.0% | |
| TGCATCCTCAACCAAGTTCA+AGG | + | chr4_4:62451154-62451173 | Msa0693510:CDS | 45.0% | |
| ATCCTCAACCAAGTTCAAGG+TGG | + | chr4_4:62451157-62451176 | Msa0693510:CDS | 45.0% | |
| GAAGCTGCGAAGCTATTTGT+TGG | - | chr4_4:62451260-62451279 | None:intergenic | 45.0% | |
| TCAGAAAAGCAAGAAGCTGC+AGG | + | chr4_4:62451438-62451457 | Msa0693510:CDS | 45.0% | |
| AAACTGCAGTGAACAAGCAG+AGG | + | chr4_4:62451986-62452005 | Msa0693510:CDS | 45.0% | |
| CTCCACCTTGAACTTGGTTG+AGG | - | chr4_4:62451162-62451181 | None:intergenic | 50.0% | |
| GTTGGACTCCACCTTGAACT+TGG | - | chr4_4:62451168-62451187 | None:intergenic | 50.0% | |
| GCTTCGCAGCTTCGACAATT+TGG | + | chr4_4:62451267-62451286 | Msa0693510:CDS | 50.0% | |
| CTCCACCTTGAACTTGGTTG+AGG | - | chr4_4:62451162-62451181 | None:intergenic | 50.0% | |
| GTTGGACTCCACCTTGAACT+TGG | - | chr4_4:62451168-62451187 | None:intergenic | 50.0% | |
| GCTTCGCAGCTTCGACAATT+TGG | + | chr4_4:62451267-62451286 | Msa0693510:CDS | 50.0% | |
| GCTCTCTCGCCTTGTGATTC+TGG | - | chr4_4:62451326-62451345 | None:intergenic | 55.0% | |
| GCTCTCTCGCCTTGTGATTC+TGG | - | chr4_4:62451326-62451345 | None:intergenic | 55.0% | |
| !! | GAAGCGTCGTCGCCTTGAGA+TGG | + | chr4_4:62451350-62451369 | Msa0693510:CDS | 60.0% |
| !! | GAAGCGTCGTCGCCTTGAGA+TGG | + | chr4_4:62451350-62451369 | Msa0693510:CDS | 60.0% |
| GCGTCGTCGCCTTGAGATGG+AGG | + | chr4_4:62451353-62451372 | Msa0693510:CDS | 65.0% | |
| GCGTCGTCGCCTTGAGATGG+AGG | + | chr4_4:62451353-62451372 | Msa0693510:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 62451123 | 62452034 | 62451123 | ID=Msa0693510;Name=Msa0693510 |
| chr4_4 | mRNA | 62451123 | 62452034 | 62451123 | ID=Msa0693510-mRNA-1;Parent=Msa0693510;Name=Msa0693510-mRNA-1;_AED=0.15;_eAED=0.18;_QI=0|0|0|1|1|1|2|0|143 |
| chr4_4 | exon | 62451123 | 62451459 | 62451123 | ID=Msa0693510-mRNA-1:exon:17467;Parent=Msa0693510-mRNA-1 |
| chr4_4 | exon | 62451940 | 62452034 | 62451940 | ID=Msa0693510-mRNA-1:exon:17468;Parent=Msa0693510-mRNA-1 |
| chr4_4 | CDS | 62451123 | 62451459 | 62451123 | ID=Msa0693510-mRNA-1:cds;Parent=Msa0693510-mRNA-1 |
| chr4_4 | CDS | 62451940 | 62452034 | 62451940 | ID=Msa0693510-mRNA-1:cds;Parent=Msa0693510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
