AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0693660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693660 MtrunA17_Chr3g0134451 37.037 270 132 6 1 245 1 257 7.53e-46 158
Msa0693660 MtrunA17_Chr4g0044071 100.000 62 0 0 1 62 1 62 2.98e-37 129
Msa0693660 MtrunA17_Chr5g0425191 93.548 62 4 0 1 62 1 62 8.57e-36 125
Msa0693660 MtrunA17_Chr5g0425181 51.825 137 16 3 128 214 15 151 1.96e-33 121
Msa0693660 MtrunA17_Chr5g0425171 72.500 80 16 4 251 325 1 79 8.46e-24 92.8
Msa0693660 MtrunA17_Chr4g0060841 35.393 178 100 5 1 177 1 164 9.10e-24 100
Msa0693660 MtrunA17_Chr7g0246381 67.241 58 19 0 1 58 1 58 6.61e-23 90.5
Msa0693660 MtrunA17_Chr3g0077501 34.254 181 80 2 1 181 1 142 7.87e-23 94.7
Msa0693660 MtrunA17_Chr3g0097101 34.021 194 88 4 1 194 16 169 8.85e-23 95.1
Msa0693660 MtrunA17_Chr5g0417661 66.129 62 21 0 1 62 56 117 5.05e-22 89.7
Msa0693660 MtrunA17_Chr7g0220111 57.143 70 30 0 1 70 1 70 8.06e-22 92.4
Msa0693660 MtrunA17_Chr2g0284911 58.571 70 28 1 1 70 16 84 1.14e-21 92.4
Msa0693660 MtrunA17_Chr5g0420091 55.714 70 31 0 1 70 1 70 1.23e-21 91.3
Msa0693660 MtrunA17_Chr3g0122251 57.143 70 30 0 1 70 1 70 2.54e-21 91.3
Msa0693660 MtrunA17_Chr4g0061671 57.143 70 30 0 1 70 1 70 2.77e-21 89.7
Msa0693660 MtrunA17_Chr8g0377561 64.912 57 20 0 1 57 1 57 3.94e-21 86.7
Msa0693660 MtrunA17_Chr6g0455511 57.143 70 30 0 1 70 1 70 4.44e-21 90.5
Msa0693660 MtrunA17_Chr4g0061691 35.429 175 98 5 1 172 1 163 5.17e-21 90.1
Msa0693660 MtrunA17_Chr8g0380021 67.241 58 19 0 1 58 17 74 7.58e-21 89.7
Msa0693660 MtrunA17_Chr2g0279821 32.683 205 109 6 1 178 1 203 8.44e-21 89.7
Msa0693660 MtrunA17_Chr8g0351051 66.667 57 19 0 1 57 1 57 8.62e-21 89.7
Msa0693660 MtrunA17_Chr7g0246431 33.702 181 81 4 1 181 1 142 1.42e-20 88.2
Msa0693660 MtrunA17_Chr7g0220121 31.492 181 84 2 1 181 1 141 1.62e-20 89.0
Msa0693660 MtrunA17_Chr1g0173161 62.295 61 23 0 1 61 1 61 1.67e-20 84.3
Msa0693660 MtrunA17_Chr8g0351041 57.576 66 28 0 1 66 1 66 2.62e-20 86.3
Msa0693660 MtrunA17_Chr8g0351031 57.576 66 28 0 1 66 1 66 4.75e-20 87.0
Msa0693660 MtrunA17_Chr8g0366231 50.000 78 39 0 1 78 1 78 8.55e-20 86.7
Msa0693660 MtrunA17_Chr5g0412461 31.274 259 130 9 1 258 1 212 1.08e-19 86.3
Msa0693660 MtrunA17_Chr5g0420081 30.928 194 95 3 1 194 1 155 1.74e-19 85.9
Msa0693660 MtrunA17_Chr4g0020221 51.163 86 37 2 1 84 1 83 1.78e-19 86.3
Msa0693660 MtrunA17_Chr3g0125241 54.930 71 31 1 1 70 26 96 3.34e-19 84.3
Msa0693660 MtrunA17_Chr6g0474371 51.429 70 34 0 1 70 1 70 3.58e-19 84.0
Msa0693660 MtrunA17_Chr4g0057151 57.143 70 29 1 1 70 1 69 4.12e-19 84.0
Msa0693660 MtrunA17_Chr2g0308251 47.945 73 38 0 1 73 1 73 5.41e-19 80.5
Msa0693660 MtrunA17_Chr5g0404951 64.912 57 20 0 1 57 1 57 1.04e-18 83.6
Msa0693660 MtrunA17_Chr5g0427921 54.098 61 28 0 1 61 1 61 1.11e-18 78.6
Msa0693660 MtrunA17_Chr5g0419601 36.957 138 70 4 1 138 8 128 1.51e-18 83.2
Msa0693660 MtrunA17_Chr3g0142191 63.158 57 21 0 1 57 1 57 2.07e-18 82.8
Msa0693660 MtrunA17_Chr5g0412271 32.323 198 94 5 1 198 1 158 4.52e-18 81.6
Msa0693660 MtrunA17_Chr5g0411691 40.458 131 73 3 1 127 1 130 5.60e-18 81.6
Msa0693660 MtrunA17_Chr4g0049541 29.384 211 109 2 1 211 1 171 1.41e-17 80.5
Msa0693660 MtrunA17_Chr1g0164791 50.704 71 34 1 1 70 1 71 2.08e-17 80.1
Msa0693660 MtrunA17_Chr2g0317451 33.708 178 93 5 2 178 9 162 3.11e-17 79.7
Msa0693660 MtrunA17_Chr2g0317481 33.708 178 93 5 2 178 9 162 4.15e-17 79.3
Msa0693660 MtrunA17_Chr5g0427401 48.571 70 35 1 1 70 1 69 4.36e-17 79.0
Msa0693660 MtrunA17_Chr8g0379021 50.704 71 34 1 2 72 12 81 5.74e-17 77.4
Msa0693660 MtrunA17_Chr1g0159661 50.704 71 34 1 1 70 1 71 5.82e-17 77.4
Msa0693660 MtrunA17_Chr4g0018421 42.169 83 48 0 1 83 1 83 6.31e-17 78.2
Msa0693660 MtrunA17_Chr8g0355091 40.000 105 62 1 2 106 9 112 6.54e-17 78.6
Msa0693660 MtrunA17_Chr1g0204111 58.621 58 24 0 1 58 17 74 1.04e-16 78.6
Msa0693660 MtrunA17_Chr1g0208581 43.529 85 47 1 2 86 9 92 2.22e-16 77.0
Msa0693660 MtrunA17_Chr3g0099421 51.316 76 35 2 2 76 34 108 2.82e-16 77.4
Msa0693660 MtrunA17_Chr8g0357771 49.296 71 35 1 1 71 1 70 3.79e-16 75.5
Msa0693660 MtrunA17_Chr2g0292791 38.136 118 71 2 2 118 9 125 4.06e-16 76.6
Msa0693660 MtrunA17_Chr1g0206701 47.368 76 38 2 2 76 9 83 5.04e-16 76.3
Msa0693660 MtrunA17_Chr4g0044081 100.000 34 0 0 148 181 8 41 5.18e-16 72.0
Msa0693660 MtrunA17_Chr1g0208561 48.611 72 36 1 2 73 9 79 7.56e-16 75.5
Msa0693660 MtrunA17_Chr3g0089141 48.611 72 36 1 2 73 9 79 1.03e-15 75.1
Msa0693660 MtrunA17_Chr1g0166611 52.941 68 29 1 13 77 17 84 1.03e-15 72.8
Msa0693660 MtrunA17_Chr3g0099411 47.368 76 38 2 2 76 9 83 1.19e-15 74.7
Msa0693660 MtrunA17_Chr1g0206721 47.368 76 38 2 2 76 9 83 1.44e-15 75.1
Msa0693660 MtrunA17_Chr1g0175611 46.575 73 38 1 1 73 1 72 1.67e-15 73.2
Msa0693660 MtrunA17_Chr2g0333981 50.704 71 34 1 1 71 11 80 1.92e-15 73.2
Msa0693660 MtrunA17_Chr4g0049901 55.932 59 26 0 1 59 27 85 2.06e-15 74.7
Msa0693660 MtrunA17_Chr1g0188671 50.000 76 36 2 2 76 47 121 3.11e-15 74.7
Msa0693660 MtrunA17_Chr4g0074101 52.113 71 33 1 1 71 1 70 3.88e-15 72.8
Msa0693660 MtrunA17_Chr1g0206991 41.176 85 49 1 2 86 9 92 4.90e-15 72.4
Msa0693660 MtrunA17_Chr2g0325971 42.353 85 48 1 2 86 9 92 5.56e-15 73.2
Msa0693660 MtrunA17_Chr5g0422941 49.367 79 38 2 2 79 9 86 6.26e-15 73.2
Msa0693660 MtrunA17_Chr1g0187361 50.000 76 36 2 2 76 9 83 7.69e-15 72.8
Msa0693660 MtrunA17_Chr3g0089151 41.758 91 49 4 2 91 9 96 7.72e-15 70.5
Msa0693660 MtrunA17_Chr1g0149391 47.887 71 36 1 2 72 9 78 8.15e-15 72.8
Msa0693660 MtrunA17_Chr4g0018951 34.615 130 78 4 16 145 26 148 8.74e-15 71.2
Msa0693660 MtrunA17_Chr8g0376821 47.887 71 36 1 1 71 1 70 1.78e-14 70.9
Msa0693660 MtrunA17_Chr2g0300441 38.947 95 57 1 2 96 9 102 3.14e-14 71.2
Msa0693660 MtrunA17_Chr1g0180591 46.575 73 38 1 1 73 1 72 3.59e-14 69.7
Msa0693660 MtrunA17_Chr3g0119901 44.444 72 39 1 1 72 8 78 3.86e-14 70.5
Msa0693660 MtrunA17_Chr1g0169761 47.887 71 36 1 1 71 1 70 5.82e-14 69.3
Msa0693660 MtrunA17_Chr5g0422421 47.887 71 36 1 2 72 9 78 1.39e-13 69.3
Msa0693660 MtrunA17_Chr1g0175601 32.168 143 81 4 1 130 1 140 2.27e-13 67.4
Msa0693660 MtrunA17_Chr3g0085241 43.662 71 39 1 1 71 40 109 3.46e-13 68.6
Msa0693660 MtrunA17_Chr8g0356071 43.662 71 39 1 1 71 1 70 6.96e-13 65.9
Msa0693660 MtrunA17_Chr2g0300421 40.000 85 50 1 2 86 9 92 7.46e-13 65.9
Msa0693660 MtrunA17_Chr4g0071601 32.275 189 110 5 1 184 11 186 6.88e-12 63.5
Msa0693660 MtrunA17_Chr4g0052061 43.662 71 39 1 1 71 1 70 7.12e-12 62.8
Msa0693660 MtrunA17_Chr6g0457851 34.118 85 49 1 1 78 11 95 1.95e-11 64.3
Msa0693660 MtrunA17_Chr4g0052081 50.000 52 26 0 1 52 1 52 3.79e-11 61.2
Msa0693660 MtrunA17_Chr1g0206691 43.548 62 34 1 11 72 1 61 5.94e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693660 AT1G22130.1 49.709 344 137 9 1 317 1 335 3.94e-94 283
Msa0693660 AT1G77980.1 46.802 344 127 7 1 300 1 332 7.76e-90 272
Msa0693660 AT1G77950.3 59.563 183 72 1 1 181 1 183 2.73e-72 224
Msa0693660 AT1G77950.2 59.563 183 72 1 1 181 1 183 2.73e-72 224
Msa0693660 AT1G77950.1 59.563 183 72 1 1 181 1 183 2.73e-72 224
Msa0693660 AT1G77950.4 59.563 183 72 1 1 181 1 183 2.73e-72 224
Msa0693660 AT1G18750.4 44.681 141 64 5 1 140 1 128 8.70e-26 106
Msa0693660 AT1G18750.1 44.681 141 64 5 1 140 1 128 1.01e-25 106
Msa0693660 AT2G03060.3 35.165 182 103 4 1 181 1 168 8.90e-25 103
Msa0693660 AT2G03060.7 35.165 182 103 4 1 181 1 168 8.90e-25 103
Msa0693660 AT2G03060.1 35.165 182 103 4 1 181 1 168 8.90e-25 103
Msa0693660 AT1G18750.3 60.759 79 30 1 1 78 1 79 1.12e-24 103
Msa0693660 AT2G03060.2 35.165 182 103 4 1 181 1 168 1.16e-24 103
Msa0693660 AT4G09960.2 33.158 190 88 3 1 190 1 151 4.08e-24 98.2
Msa0693660 AT4G37435.1 32.418 182 108 3 1 181 1 168 4.01e-23 94.7
Msa0693660 AT4G09960.1 33.702 181 81 3 1 181 1 142 7.56e-23 95.1
Msa0693660 AT4G09960.6 33.702 181 81 3 1 181 2 143 9.00e-23 95.1
Msa0693660 AT4G09960.5 33.702 181 81 3 1 181 11 152 1.09e-22 95.1
Msa0693660 AT4G09960.3 33.702 181 81 3 1 181 27 168 2.29e-22 94.7
Msa0693660 AT1G69540.1 35.135 185 106 5 1 184 1 172 2.35e-22 96.3
Msa0693660 AT1G69540.2 35.135 185 106 5 1 184 1 172 2.63e-22 96.3
Msa0693660 AT2G45650.1 61.429 70 26 1 1 70 1 69 4.68e-22 93.6
Msa0693660 AT4G09960.4 33.702 181 81 3 1 181 96 237 9.19e-22 94.4
Msa0693660 AT5G60910.1 31.959 194 93 4 1 194 1 155 1.50e-21 92.0
Msa0693660 AT1G24260.1 35.393 178 98 6 1 173 1 166 2.32e-21 91.7
Msa0693660 AT4G11880.2 58.571 70 29 0 1 70 1 70 2.84e-21 89.7
Msa0693660 AT4G11880.3 58.571 70 29 0 1 70 1 70 2.84e-21 89.7
Msa0693660 AT5G15800.1 36.413 184 86 7 1 173 1 164 3.85e-21 91.3
Msa0693660 AT3G58780.2 63.934 61 22 0 1 61 16 76 3.86e-21 90.9
Msa0693660 AT1G24260.3 57.143 70 30 0 1 70 1 70 3.99e-21 90.9
Msa0693660 AT1G24260.2 34.483 174 106 4 1 173 1 167 4.17e-21 90.9
Msa0693660 AT5G15800.2 36.413 184 86 7 1 173 1 164 4.78e-21 91.3
Msa0693660 AT2G42830.2 33.505 194 103 7 1 183 16 194 5.56e-21 90.5
Msa0693660 AT4G18960.1 60.870 69 26 1 2 70 18 85 6.23e-21 90.5
Msa0693660 AT4G11880.4 58.571 70 29 0 1 70 1 70 6.59e-21 89.7
Msa0693660 AT4G11880.1 58.571 70 29 0 1 70 1 70 6.59e-21 89.7
Msa0693660 AT2G42830.1 33.333 192 104 7 1 183 16 192 6.89e-21 90.5
Msa0693660 AT3G61120.1 35.260 173 100 4 1 165 1 169 9.55e-21 89.7
Msa0693660 AT3G58780.1 57.143 70 29 1 1 70 16 84 1.25e-20 89.7
Msa0693660 AT3G02310.1 55.714 70 31 0 1 70 1 70 1.28e-20 89.7
Msa0693660 AT1G26310.1 34.270 178 90 4 1 151 1 178 1.34e-20 89.7
Msa0693660 AT3G58780.5 57.143 70 29 1 1 70 22 90 1.51e-20 89.7
Msa0693660 AT2G03710.3 66.667 57 19 0 1 57 1 57 1.57e-20 87.8
Msa0693660 AT3G02310.2 55.714 70 31 0 1 70 1 70 1.72e-20 88.2
Msa0693660 AT5G10140.4 58.571 70 29 0 1 70 1 70 2.38e-20 87.4
Msa0693660 AT2G45660.1 33.503 197 108 8 1 192 1 179 2.41e-20 88.2
Msa0693660 AT5G10140.2 58.571 70 29 0 1 70 1 70 2.41e-20 87.0
Msa0693660 AT2G45660.2 53.521 71 32 1 1 71 1 70 2.50e-20 86.7
Msa0693660 AT3G30260.1 52.857 70 33 0 1 70 1 70 2.57e-20 89.0
Msa0693660 AT5G10140.1 58.571 70 29 0 1 70 1 70 2.83e-20 87.4
Msa0693660 AT2G03710.1 60.870 69 23 1 1 65 1 69 2.86e-20 89.0
Msa0693660 AT3G58780.3 65.517 58 20 0 1 58 16 73 2.93e-20 89.4
Msa0693660 AT2G03710.2 60.870 69 23 1 1 65 1 69 2.96e-20 89.0
Msa0693660 AT4G22950.2 62.712 59 22 0 1 59 1 59 3.24e-20 86.7
Msa0693660 AT3G58780.4 57.143 70 29 1 1 70 16 84 3.43e-20 89.0
Msa0693660 AT5G10140.3 58.571 70 29 0 1 70 1 70 4.09e-20 86.7
Msa0693660 AT1G69120.2 30.928 194 95 4 1 194 1 155 4.18e-20 87.8
Msa0693660 AT1G69120.1 30.928 194 95 4 1 194 1 155 5.87e-20 87.8
Msa0693660 AT3G57390.3 60.000 70 27 1 1 70 1 69 6.10e-20 87.4
Msa0693660 AT3G57390.1 60.000 70 27 1 1 70 1 69 9.88e-20 87.4
Msa0693660 AT4G22950.3 57.143 70 29 1 1 70 1 69 1.05e-19 86.7
Msa0693660 AT4G22950.1 57.143 70 29 1 1 70 1 69 1.05e-19 86.7
Msa0693660 AT5G62165.6 32.418 182 82 4 1 181 1 142 1.27e-19 84.3
Msa0693660 AT5G62165.9 32.418 182 82 4 1 181 1 142 1.27e-19 84.3
Msa0693660 AT5G62165.7 32.418 182 82 4 1 181 1 142 1.27e-19 84.3
Msa0693660 AT5G62165.8 32.418 182 82 4 1 181 1 142 1.27e-19 84.3
Msa0693660 AT5G62165.13 32.418 182 82 4 1 181 1 142 1.27e-19 84.3
Msa0693660 AT3G57230.2 55.714 70 30 1 1 70 1 69 1.43e-19 84.0
Msa0693660 AT5G62165.17 32.240 183 83 4 1 182 1 143 1.62e-19 84.3
Msa0693660 AT5G62165.12 32.240 183 83 4 1 182 1 143 1.62e-19 84.3
Msa0693660 AT5G62165.11 32.240 183 83 4 1 182 1 143 1.62e-19 84.3
Msa0693660 AT4G24540.1 33.862 189 72 5 1 182 1 143 2.03e-19 85.9
Msa0693660 AT5G62165.10 32.461 191 88 4 1 190 1 151 2.05e-19 85.1
Msa0693660 AT5G62165.4 32.461 191 88 4 1 190 1 151 2.05e-19 85.1
Msa0693660 AT5G51870.2 31.492 181 86 3 1 181 1 143 2.49e-19 84.3
Msa0693660 AT5G13790.1 56.944 72 30 1 1 72 1 71 3.34e-19 86.3
Msa0693660 AT5G13790.2 56.944 72 30 1 1 72 1 71 3.40e-19 86.3
Msa0693660 AT5G65070.4 55.714 70 31 0 1 70 1 70 3.64e-19 83.2
Msa0693660 AT3G54340.1 64.912 57 20 0 1 57 1 57 4.19e-19 85.1
Msa0693660 AT5G51870.1 32.990 194 99 6 1 183 1 174 4.43e-19 84.3
Msa0693660 AT5G65070.1 55.714 70 31 0 1 70 1 70 4.63e-19 84.3
Msa0693660 AT5G51870.5 31.492 181 86 3 1 181 24 166 6.63e-19 83.6
Msa0693660 AT5G62165.3 32.240 183 83 4 1 182 1 143 7.33e-19 84.0
Msa0693660 AT5G62165.1 32.240 183 83 4 1 182 1 143 7.33e-19 84.0
Msa0693660 AT5G62165.2 32.240 183 83 4 1 182 1 143 7.33e-19 84.0
Msa0693660 AT3G57230.1 55.714 70 30 1 1 70 1 69 8.50e-19 84.3
Msa0693660 AT3G57230.4 55.714 70 30 1 1 70 1 69 8.50e-19 84.3
Msa0693660 AT5G65070.5 55.714 70 31 0 1 70 1 70 1.17e-18 83.6
Msa0693660 AT5G51870.4 33.158 190 96 6 1 179 1 170 1.25e-18 83.6
Msa0693660 AT5G65070.2 55.714 70 31 0 1 70 1 70 1.41e-18 83.6
Msa0693660 AT5G51870.3 33.158 190 96 6 1 179 11 180 1.49e-18 83.6
Msa0693660 AT5G23260.3 46.296 108 51 3 1 101 1 108 1.65e-18 83.6
Msa0693660 AT5G23260.1 38.509 161 87 5 1 153 17 173 1.67e-18 84.0
Msa0693660 AT5G23260.4 46.296 108 51 3 1 101 17 124 1.68e-18 84.3
Msa0693660 AT5G23260.2 46.296 108 51 3 1 101 1 108 1.77e-18 84.0
Msa0693660 AT5G65070.3 59.155 71 28 1 1 70 1 71 2.19e-18 83.2
Msa0693660 AT1G71692.1 44.444 81 45 0 1 81 1 81 2.85e-18 82.4
Msa0693660 AT5G65050.5 36.306 157 90 4 1 149 1 155 1.37e-17 79.7
Msa0693660 AT2G14210.1 44.156 77 43 0 1 77 1 77 1.45e-17 80.9
Msa0693660 AT2G14210.2 44.156 77 43 0 1 77 1 77 1.89e-17 80.5
Msa0693660 AT5G62165.14 55.714 70 30 1 1 70 1 69 2.22e-17 77.0
Msa0693660 AT5G65050.2 43.810 105 53 2 1 100 1 104 3.34e-17 78.6
Msa0693660 AT2G22540.3 51.429 70 33 1 1 70 1 69 5.19e-17 79.3
Msa0693660 AT2G22540.1 51.429 70 33 1 1 70 1 69 5.19e-17 79.3
Msa0693660 AT5G65050.3 43.810 105 53 2 1 100 1 104 7.28e-17 78.2
Msa0693660 AT5G65050.1 43.810 105 53 2 1 100 1 104 8.14e-17 77.8
Msa0693660 AT4G37940.3 51.429 70 33 1 1 70 1 69 8.48e-17 77.4
Msa0693660 AT5G20240.2 61.111 54 21 0 1 54 1 54 1.09e-16 76.3
Msa0693660 AT4G37940.1 51.429 70 33 1 1 70 1 69 1.38e-16 78.2
Msa0693660 AT4G37940.4 51.429 70 33 1 1 70 1 69 1.43e-16 77.8
Msa0693660 AT5G51860.2 52.857 70 32 1 1 70 1 69 1.80e-16 77.0
Msa0693660 AT5G51860.1 52.857 70 32 1 1 70 1 69 2.18e-16 77.0
Msa0693660 AT5G20240.1 61.111 54 21 0 1 54 1 54 2.30e-16 77.0
Msa0693660 AT1G31140.2 52.113 71 33 1 1 70 1 71 4.22e-16 76.3
Msa0693660 AT1G31140.1 52.113 71 33 1 1 70 1 71 4.40e-16 76.3
Msa0693660 AT5G65060.2 43.137 102 52 2 1 97 1 101 4.80e-16 75.5
Msa0693660 AT5G65060.1 42.857 105 54 2 1 100 1 104 5.00e-16 75.9
Msa0693660 AT2G22540.2 59.259 54 22 0 1 54 1 54 5.70e-16 76.6
Msa0693660 AT5G65060.3 43.137 102 52 2 1 97 1 101 7.60e-16 75.1
Msa0693660 AT2G22630.1 54.237 59 27 0 1 59 1 59 2.97e-15 74.3
Msa0693660 AT2G22630.2 54.237 59 27 0 1 59 1 59 2.97e-15 74.3
Msa0693660 AT5G65080.3 47.143 70 37 0 1 70 8 77 9.09e-15 72.0
Msa0693660 AT5G65080.2 56.452 62 26 1 1 61 8 69 4.49e-14 70.5
Msa0693660 AT2G26320.1 43.750 80 44 1 1 79 17 96 5.01e-14 67.8
Msa0693660 AT5G60440.1 26.339 224 133 8 2 218 7 205 1.33e-13 70.5
Msa0693660 AT1G47760.1 53.846 52 24 0 1 52 1 52 2.06e-13 68.2
Msa0693660 AT3G66656.1 41.667 72 41 1 1 72 1 71 4.29e-13 67.0
Msa0693660 AT1G77080.11 54.286 70 32 0 1 70 1 70 6.81e-13 66.6
Msa0693660 AT1G01530.1 52.632 57 27 0 1 57 6 62 7.12e-13 67.8
Msa0693660 AT1G77080.5 54.286 70 32 0 1 70 1 70 7.98e-13 66.2
Msa0693660 AT1G77080.4 54.286 70 32 0 1 70 1 70 8.54e-13 66.6
Msa0693660 AT2G24840.1 45.833 72 38 1 1 72 62 132 9.30e-13 67.8
Msa0693660 AT1G77080.12 75.000 40 10 0 1 40 1 40 1.67e-12 64.7
Msa0693660 AT1G77080.8 45.714 105 49 3 1 99 1 103 1.91e-12 66.2
Msa0693660 AT1G77080.2 75.000 40 10 0 1 40 1 40 2.86e-12 65.1
Msa0693660 AT4G36590.1 46.479 71 37 1 2 72 7 76 6.95e-12 65.1
Msa0693660 AT1G72350.1 54.386 57 26 0 2 58 43 99 9.75e-12 64.3
Msa0693660 AT2G34440.1 39.437 71 42 1 1 71 1 70 1.05e-11 63.2

Find 57 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATAGATGTCATCTTTAA+TGG 0.172713 4_4:-62590930 None:intergenic
GAACATACTTATCTCTTTCT+TGG 0.254516 4_4:-62589734 None:intergenic
GCTTGAATGTTTCCATCGTT+TGG 0.305014 4_4:-62593010 None:intergenic
GATTTGTCCTCTACTGTATA+TGG 0.307544 4_4:+62592917 Msa0693660:CDS
AAATGGTAGAGGAGCAAATA+AGG 0.337725 4_4:+62590783 Msa0693660:CDS
AAATGATTAAGACGATTTGA+TGG 0.363568 4_4:-62589189 None:intergenic
TACTTATCTCTTTCTTGGTC+AGG 0.364285 4_4:-62589729 None:intergenic
GTAATCTACTAACTTCTTGT+TGG 0.390980 4_4:-62590748 None:intergenic
CAACCTAATCACCAGCTTCA+TGG 0.392030 4_4:+62593223 Msa0693660:CDS
CTATAGATGTCATCTTTAAT+GGG 0.404310 4_4:-62590929 None:intergenic
GATGTCATCTTTAATGGGTC+GGG 0.420679 4_4:-62590924 None:intergenic
TCAACTTGTGAGGCAGTGAT+TGG 0.428516 4_4:-62593157 None:intergenic
GTCCATGTAGCATCATATCT+TGG 0.432097 4_4:-62593123 None:intergenic
TGACCATGAAGCTGGTGATT+AGG 0.440702 4_4:-62593226 None:intergenic
TTACGAACTTGGACATATGA+AGG 0.447873 4_4:-62590430 None:intergenic
ACATATTCAAAACGTAGAAA+TGG 0.460629 4_4:+62589099 Msa0693660:CDS
GTTGTTGATCCACGAGGTAT+AGG 0.473863 4_4:+62592968 Msa0693660:CDS
AGAAACCTTGGCACGTGTCA+TGG 0.475032 4_4:+62590983 Msa0693660:CDS
ATTACAACAACAACTTCAAA+TGG 0.479837 4_4:+62590766 Msa0693660:CDS
GGCACGTGTCATGGAGAGAA+AGG 0.482362 4_4:+62590992 Msa0693660:CDS
TACCTTCGGTAGGGTAGCTC+AGG 0.489363 4_4:-62589877 None:intergenic
AGATGTCATCTTTAATGGGT+CGG 0.506566 4_4:-62590925 None:intergenic
TCTATAGCAGAGCTTGAAAC+CGG 0.508243 4_4:+62590945 Msa0693660:CDS
CCTCTTTCGAGAATGTTAGT+TGG 0.510880 4_4:+62592647 Msa0693660:CDS
CAGCTCCTATGGATCCTCTC+AGG 0.512451 4_4:+62592713 Msa0693660:CDS
TGAGTATGTATACCTTCGGT+AGG 0.526232 4_4:-62589887 None:intergenic
TCTCTCCATGACACGTGCCA+AGG 0.532693 4_4:-62590988 None:intergenic
TCAGGATACTTCAGCAGTTG+AGG 0.541962 4_4:+62590390 Msa0693660:CDS
CATATTCAACATGACATTGT+GGG 0.545032 4_4:+62593073 Msa0693660:CDS
CCAACTAACATTCTCGAAAG+AGG 0.545727 4_4:-62592647 None:intergenic
AGACATTAACTCTGAGGTTG+AGG 0.553929 4_4:+62590585 Msa0693660:CDS
CATCGTTTGGATTTGCCACG+TGG 0.555678 4_4:-62592997 None:intergenic
TACGAACTTGGACATATGAA+GGG 0.559614 4_4:-62590429 None:intergenic
AACATTCAAGCATGGCCTCA+AGG 0.560099 4_4:+62593022 Msa0693660:CDS
ATCCAAGATATGATGCTACA+TGG 0.575427 4_4:+62593121 Msa0693660:CDS
TGAAACCTGAGAGGATCCAT+AGG 0.583931 4_4:-62592718 None:intergenic
TGTGTCATTGACCATGAAGC+TGG 0.589166 4_4:-62593234 None:intergenic
ACAACAACTTCAAATGGTAG+AGG 0.593286 4_4:+62590772 Msa0693660:CDS
TTTGGGAGGTTCAACTTGTG+AGG 0.593597 4_4:-62593167 None:intergenic
CATGAAGCTGGTGATTAGGT+TGG 0.602550 4_4:-62593222 None:intergenic
GCATATTCAACATGACATTG+TGG 0.604754 4_4:+62593072 Msa0693660:CDS
TTCCTGAGCTACCCTACCGA+AGG 0.607215 4_4:+62589875 Msa0693660:CDS
GAGTATGTATACCTTCGGTA+GGG 0.632929 4_4:-62589886 None:intergenic
ACGATGGAAACATTCAAGCA+TGG 0.641645 4_4:+62593014 Msa0693660:CDS
TGAATATGCTGCTGATGTTG+AGG 0.644211 4_4:-62593058 None:intergenic
TGGCACTCTCCTATACCTCG+TGG 0.644590 4_4:-62592977 None:intergenic
CTAACATTCTCGAAAGAGGT+CGG 0.649958 4_4:-62592643 None:intergenic
TTCGGGAGACATTAACTCTG+AGG 0.657636 4_4:+62590579 Msa0693660:CDS
AATGTTAGTTGGCTGCAAGA+TGG 0.658329 4_4:+62592658 Msa0693660:CDS
GGATATAATGTGTATCCTTG+AGG 0.659375 4_4:-62593037 None:intergenic
GTTAGTTGGCTGCAAGATGG+TGG 0.663132 4_4:+62592661 Msa0693660:CDS
GAGCAATATCAATATCACAA+AGG 0.664332 4_4:-62589152 None:intergenic
AAATGAACCATATACAGTAG+AGG 0.670428 4_4:-62592924 None:intergenic
TCAATAAATTGAAACCTGAG+AGG 0.671393 4_4:-62592727 None:intergenic
CACGTGGCAAATCCAAACGA+TGG 0.684598 4_4:+62592998 Msa0693660:CDS
TCAAATGTTGTTGATCCACG+AGG 0.725134 4_4:+62592962 Msa0693660:CDS
AGGTATAGGAGAGTGCCACG+TGG 0.767050 4_4:+62592982 Msa0693660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATAATTAAAATATTT+TGG - chr4_4:62590856-62590875 None:intergenic 0.0%
!! AAATTATTTCACTTTATAAT+TGG - chr4_4:62589580-62589599 None:intergenic 10.0%
!! ATTACTTTATATTAGAATTT+AGG + chr4_4:62590481-62590500 Msa0693660:intron 10.0%
!!! TTACATAATATAATTTTGAA+GGG - chr4_4:62590664-62590683 None:intergenic 10.0%
!!! TCTTCATTTATTTTATTTTT+TGG + chr4_4:62591048-62591067 Msa0693660:intron 10.0%
!!! CTTCATTTATTTTATTTTTT+GGG + chr4_4:62591049-62591068 Msa0693660:intron 10.0%
!!! TTCATTTATTTTATTTTTTG+GGG + chr4_4:62591050-62591069 Msa0693660:intron 10.0%
!!! TTTGATAGTTTATTTATATA+TGG + chr4_4:62591079-62591098 Msa0693660:intron 10.0%
!!! TTGATAGTTTATTTATATAT+GGG + chr4_4:62591080-62591099 Msa0693660:intron 10.0%
!! TAGATAATTAAAGATATTAA+CGG + chr4_4:62592166-62592185 Msa0693660:intron 10.0%
!!! TTTTTTTTTTTTTGTAGTAT+TGG + chr4_4:62592547-62592566 Msa0693660:intron 10.0%
!! AAATTATATATGAATCATTA+GGG - chr4_4:62592765-62592784 None:intergenic 10.0%
!! AAAATTATATATGAATCATT+AGG - chr4_4:62592766-62592785 None:intergenic 10.0%
!! TTTACAAACTATATATGTAT+TGG + chr4_4:62589267-62589286 Msa0693660:intron 15.0%
!! TCATTTATTTATTTATTTGC+AGG + chr4_4:62590071-62590090 Msa0693660:intron 15.0%
!! CATTTATTTATTTATTTGCA+GGG + chr4_4:62590072-62590091 Msa0693660:intron 15.0%
!! ATTTATTTATTTATTTGCAG+GGG + chr4_4:62590073-62590092 Msa0693660:intron 15.0%
!! AAAGTTATTATACACATTAT+TGG + chr4_4:62590218-62590237 Msa0693660:intron 15.0%
!!! GTTACATAATATAATTTTGA+AGG - chr4_4:62590665-62590684 None:intergenic 15.0%
!! ATGTTATGTAATTAAATGTT+TGG + chr4_4:62592452-62592471 Msa0693660:intron 15.0%
!! ATAATATTTGATCTATGTAT+AGG + chr4_4:62592894-62592913 Msa0693660:intron 15.0%
!! TAATATTTGATCTATGTATA+GGG + chr4_4:62592895-62592914 Msa0693660:intron 15.0%
!! TTGAATAAAACCTATAGATT+AGG + chr4_4:62589547-62589566 Msa0693660:intron 20.0%
!! AAATATAACAACATCACTAT+GGG - chr4_4:62589662-62589681 None:intergenic 20.0%
!! AAAATATAACAACATCACTA+TGG - chr4_4:62589663-62589682 None:intergenic 20.0%
!! AAACAATTAAGAAATGAAGA+AGG - chr4_4:62589957-62589976 None:intergenic 20.0%
!! ATGTGACAAAGATTAATTAA+AGG - chr4_4:62590159-62590178 None:intergenic 20.0%
!! GTATAATAACTTTATACTGA+CGG - chr4_4:62590211-62590230 None:intergenic 20.0%
!! TCAAAAATTGTTCTAATGTT+TGG + chr4_4:62590876-62590895 Msa0693660:intron 20.0%
!! CAAAAATTGTTCTAATGTTT+GGG + chr4_4:62590877-62590896 Msa0693660:intron 20.0%
!! AAAAATTGTTCTAATGTTTG+GGG + chr4_4:62590878-62590897 Msa0693660:intron 20.0%
!! CTTTCAGTTTGTAAAAAATT+AGG + chr4_4:62591318-62591337 Msa0693660:intron 20.0%
!! TCGAATATTATATTACGAAT+TGG + chr4_4:62591363-62591382 Msa0693660:intron 20.0%
!! AGAGAAATTTGAGAAATTAA+AGG + chr4_4:62591464-62591483 Msa0693660:intron 20.0%
!! TAGGAAAAATGTAGAAATTA+TGG + chr4_4:62591609-62591628 Msa0693660:intron 20.0%
!! TTGTAATAATTCATTGATAG+TGG + chr4_4:62591682-62591701 Msa0693660:intron 20.0%
!! TTTATTCCTAGATTAAATCT+AGG + chr4_4:62591825-62591844 Msa0693660:intron 20.0%
!! AAAAGTAGTAACTAATATCA+AGG - chr4_4:62591874-62591893 None:intergenic 20.0%
!! GATACATTAGTAAAAAAGTA+TGG - chr4_4:62592062-62592081 None:intergenic 20.0%
!!! TGAGTTTCTTTTTTAATAGT+TGG - chr4_4:62592804-62592823 None:intergenic 20.0%
!!! TATTCTGTTGAATCATTTTT+GGG - chr4_4:62593187-62593206 None:intergenic 20.0%
!!! ATATTCTGTTGAATCATTTT+TGG - chr4_4:62593188-62593207 None:intergenic 20.0%
! ACATATTCAAAACGTAGAAA+TGG + chr4_4:62589099-62589118 Msa0693660:CDS 25.0%
! AAATGATTAAGACGATTTGA+TGG - chr4_4:62589192-62589211 None:intergenic 25.0%
!!! AATCGTCTTAATCATTTTTC+AGG + chr4_4:62589195-62589214 Msa0693660:CDS 25.0%
!!! ATCATTTTTCAGGTAAAAGA+AGG + chr4_4:62589205-62589224 Msa0693660:CDS 25.0%
! GAAGAAGAAAAATATGAAGA+GGG - chr4_4:62589242-62589261 None:intergenic 25.0%
! AGAAGAAGAAAAATATGAAG+AGG - chr4_4:62589243-62589262 None:intergenic 25.0%
!!! CATTTATGTTTTAGATGCAA+TGG + chr4_4:62589420-62589439 Msa0693660:intron 25.0%
!! TATTCTTTTCTTTTCCTCTA+TGG + chr4_4:62589501-62589520 Msa0693660:intron 25.0%
!! TGCTTTGCAATAAATTTTGA+AGG - chr4_4:62589622-62589641 None:intergenic 25.0%
!!! GTTATATTTTTGTTGTAAGC+AGG + chr4_4:62589673-62589692 Msa0693660:intron 25.0%
! AATTAGTAACAAAAGAGCAA+AGG - chr4_4:62590045-62590064 None:intergenic 25.0%
! TTTCTCTAACATTTACTGAT+AGG + chr4_4:62590116-62590135 Msa0693660:intron 25.0%
! ATTTCACATATTTACGAACT+TGG - chr4_4:62590444-62590463 None:intergenic 25.0%
! TAGATGAAACAATATAGGAA+AGG - chr4_4:62590545-62590564 None:intergenic 25.0%
! CTAGTTAAGAAGAGAATTTA+AGG - chr4_4:62590723-62590742 None:intergenic 25.0%
! CTTAAATTCTCTTCTTAACT+AGG + chr4_4:62590721-62590740 Msa0693660:intron 25.0%
! ATTACAACAACAACTTCAAA+TGG + chr4_4:62590766-62590785 Msa0693660:CDS 25.0%
! CTATAGATGTCATCTTTAAT+GGG - chr4_4:62590932-62590951 None:intergenic 25.0%
! AAAACATGCATGTTTATTCA+TGG + chr4_4:62591114-62591133 Msa0693660:intron 25.0%
! GAATCTTATATGTCAAAATC+GGG - chr4_4:62591345-62591364 None:intergenic 25.0%
! CGAATCTTATATGTCAAAAT+CGG - chr4_4:62591346-62591365 None:intergenic 25.0%
! ATATTACGAATTGGAATTTC+AGG + chr4_4:62591372-62591391 Msa0693660:intron 25.0%
! TATTACGAATTGGAATTTCA+GGG + chr4_4:62591373-62591392 Msa0693660:intron 25.0%
! GAAATTTGAGAAATTAAAGG+AGG + chr4_4:62591467-62591486 Msa0693660:intron 25.0%
! AAATTAAAGGAGGTAACTTT+AGG + chr4_4:62591477-62591496 Msa0693660:intron 25.0%
! AATTAAAGGAGGTAACTTTA+GGG + chr4_4:62591478-62591497 Msa0693660:intron 25.0%
!! ATACAAGAAATTAGCTTAGA+AGG - chr4_4:62591649-62591668 None:intergenic 25.0%
! AACAAAAGATAAAGAGAGAA+GGG - chr4_4:62591785-62591804 None:intergenic 25.0%
! AAACAAAAGATAAAGAGAGA+AGG - chr4_4:62591786-62591805 None:intergenic 25.0%
! AACAAACCTAGATTTAATCT+AGG - chr4_4:62591834-62591853 None:intergenic 25.0%
! TTATGCTAACAAGTATTCTA+AGG + chr4_4:62592264-62592283 Msa0693660:intron 25.0%
!!! CTTCTAAATACGTGTTTTTA+AGG + chr4_4:62592403-62592422 Msa0693660:intron 25.0%
!!! TTTTTGTAGTATTGGTATAG+TGG + chr4_4:62592555-62592574 Msa0693660:intron 25.0%
! AAAATCACAAAATTCATGAC+AGG + chr4_4:62592615-62592634 Msa0693660:intron 25.0%
! AAATCACAAAATTCATGACA+GGG + chr4_4:62592616-62592635 Msa0693660:intron 25.0%
! AGCTGATGTATCAAAAATTT+GGG - chr4_4:62592698-62592717 None:intergenic 25.0%
! AAAGATCAAGTAGTAAATGA+GGG - chr4_4:62592862-62592881 None:intergenic 25.0%
! TAAAGATCAAGTAGTAAATG+AGG - chr4_4:62592863-62592882 None:intergenic 25.0%
!! TATATGGTTCATTTTCACAA+GGG + chr4_4:62592933-62592952 Msa0693660:CDS 25.0%
GAGCAATATCAATATCACAA+AGG - chr4_4:62589155-62589174 None:intergenic 30.0%
! TTTCTTTTCCTCTATGGATT+AGG + chr4_4:62589507-62589526 Msa0693660:intron 30.0%
AAATAGATCCTAATCCATAG+AGG - chr4_4:62589518-62589537 None:intergenic 30.0%
!! ATTTGACTTGAAATCATTGC+TGG + chr4_4:62589596-62589615 Msa0693660:intron 30.0%
GAACATACTTATCTCTTTCT+TGG - chr4_4:62589737-62589756 None:intergenic 30.0%
TGAAAACTTCTAAACACGTT+TGG + chr4_4:62589798-62589817 Msa0693660:intron 30.0%
AGCAGTAGATGAAACAATAT+AGG - chr4_4:62590550-62590569 None:intergenic 30.0%
GTAATCTACTAACTTCTTGT+TGG - chr4_4:62590751-62590770 None:intergenic 30.0%
GCTATAGATGTCATCTTTAA+TGG - chr4_4:62590933-62590952 None:intergenic 30.0%
!!! TTCTACTACGTTTTTTTCAC+CGG - chr4_4:62590967-62590986 None:intergenic 30.0%
AAAAAACGTAGTAGAAACCT+TGG + chr4_4:62590971-62590990 Msa0693660:CDS 30.0%
TTAATTACCTGAATAGCTGA+TGG - chr4_4:62591182-62591201 None:intergenic 30.0%
TGTCACTCAAAATTGAGATT+TGG + chr4_4:62591223-62591242 Msa0693660:intron 30.0%
!! TTCATTCTTCATGTTTTGAG+AGG + chr4_4:62591430-62591449 Msa0693660:intron 30.0%
!!! TCATTCTTCATGTTTTGAGA+GGG + chr4_4:62591431-62591450 Msa0693660:intron 30.0%
GAAACATTTGTAAACACCTT+GGG + chr4_4:62591547-62591566 Msa0693660:intron 30.0%
!! CTCTCTTTATCTTTTGTTTG+TGG + chr4_4:62591787-62591806 Msa0693660:intron 30.0%
AATAAAACTATGATGTGTGG+AGG - chr4_4:62591901-62591920 None:intergenic 30.0%
!!! TCCACACATCATAGTTTTAT+TGG + chr4_4:62591900-62591919 Msa0693660:intron 30.0%
ACCAATAAAACTATGATGTG+TGG - chr4_4:62591904-62591923 None:intergenic 30.0%
!! AGTGGACATGTATTTTGAAA+CGG - chr4_4:62592003-62592022 None:intergenic 30.0%
!! CTTGGACATGTATTTTGAAA+CGG + chr4_4:62592224-62592243 Msa0693660:intron 30.0%
AATCACAAAATTCATGACAG+GGG + chr4_4:62592617-62592636 Msa0693660:intron 30.0%
! ATGTATCAAAAATTTGGGGT+TGG - chr4_4:62592693-62592712 None:intergenic 30.0%
GCTGATGTATCAAAAATTTG+GGG - chr4_4:62592697-62592716 None:intergenic 30.0%
GAGCTGATGTATCAAAAATT+TGG - chr4_4:62592699-62592718 None:intergenic 30.0%
TCAATAAATTGAAACCTGAG+AGG - chr4_4:62592730-62592749 None:intergenic 30.0%
AAATGAACCATATACAGTAG+AGG - chr4_4:62592927-62592946 None:intergenic 30.0%
! GTATATGGTTCATTTTCACA+AGG + chr4_4:62592932-62592951 Msa0693660:CDS 30.0%
CATATTCAACATGACATTGT+GGG + chr4_4:62593073-62593092 Msa0693660:CDS 30.0%
!! GTTTTAGATGCAATGGTTTG+TGG + chr4_4:62589427-62589446 Msa0693660:intron 35.0%
TGGTCAAGATCCTAATCTAT+AGG - chr4_4:62589560-62589579 None:intergenic 35.0%
!! TTTTGTTGTAAGCAGGATAG+AGG + chr4_4:62589680-62589699 Msa0693660:intron 35.0%
TACTTATCTCTTTCTTGGTC+AGG - chr4_4:62589732-62589751 None:intergenic 35.0%
TCTGTGAGTATGTATACCTT+CGG - chr4_4:62589894-62589913 None:intergenic 35.0%
TGAAGAAGGAACAGAAGAAT+GGG - chr4_4:62589943-62589962 None:intergenic 35.0%
ATGAAGAAGGAACAGAAGAA+TGG - chr4_4:62589944-62589963 None:intergenic 35.0%
TACGAACTTGGACATATGAA+GGG - chr4_4:62590432-62590451 None:intergenic 35.0%
TTACGAACTTGGACATATGA+AGG - chr4_4:62590433-62590452 None:intergenic 35.0%
TCTACTGCTTCAATCAAGTT+CGG + chr4_4:62590561-62590580 Msa0693660:intron 35.0%
ACAACAACTTCAAATGGTAG+AGG + chr4_4:62590772-62590791 Msa0693660:CDS 35.0%
AAATGGTAGAGGAGCAAATA+AGG + chr4_4:62590783-62590802 Msa0693660:CDS 35.0%
! AGATGTCATCTTTAATGGGT+CGG - chr4_4:62590928-62590947 None:intergenic 35.0%
!! TGGTCCGATTTGGTAAAATT+GGG + chr4_4:62591262-62591281 Msa0693660:intron 35.0%
! AGACCCCAATTTTACCAAAT+CGG - chr4_4:62591269-62591288 None:intergenic 35.0%
TAAAATTGGGGTCTGATTCT+TGG + chr4_4:62591275-62591294 Msa0693660:intron 35.0%
! AAGTCTGAAACACCAAAACT+GGG - chr4_4:62591301-62591320 None:intergenic 35.0%
! AAAGTCTGAAACACCAAAAC+TGG - chr4_4:62591302-62591321 None:intergenic 35.0%
!!! CGAGTTTTGAGCACTATAAA+AGG + chr4_4:62591406-62591425 Msa0693660:intron 35.0%
!!! CATTCTTCATGTTTTGAGAG+GGG + chr4_4:62591432-62591451 Msa0693660:intron 35.0%
TCTTTGATTAGGGTTTCTTG+AGG + chr4_4:62591508-62591527 Msa0693660:intron 35.0%
CTTTGATTAGGGTTTCTTGA+GGG + chr4_4:62591509-62591528 Msa0693660:intron 35.0%
GGAAACATTTGTAAACACCT+TGG + chr4_4:62591546-62591565 Msa0693660:intron 35.0%
! TCATTGAGTGTCTTGTTCAT+TGG + chr4_4:62591580-62591599 Msa0693660:intron 35.0%
TCTTGTTCATTGGTGAGATT+AGG + chr4_4:62591590-62591609 Msa0693660:intron 35.0%
ATCAATCTCTCCCTTAAAGT+TGG + chr4_4:62591714-62591733 Msa0693660:intron 35.0%
TCCAACTTGACCAACTTTAA+GGG - chr4_4:62591727-62591746 None:intergenic 35.0%
CAAGAAATGTTTACCCAGAT+CGG - chr4_4:62591750-62591769 None:intergenic 35.0%
!! AGGTTTGTTATTGTTGCTTC+TGG + chr4_4:62591845-62591864 Msa0693660:intron 35.0%
!!! GACATGTATTTTGAAACGGA+GGG - chr4_4:62592228-62592247 None:intergenic 35.0%
ATAGTGCACATTGCAAAAAG+TGG - chr4_4:62592021-62592040 None:intergenic 35.0%
TAACGGTCAAAATTGTGCAT+TGG + chr4_4:62592183-62592202 Msa0693660:intron 35.0%
! CATATGTGAAGTTGTTGACT+TGG + chr4_4:62592206-62592225 Msa0693660:intron 35.0%
!!! GACATGTATTTTGAAACGGA+GGG + chr4_4:62592228-62592247 Msa0693660:intron 35.0%
! TTTTGATACATCAGCTCCTA+TGG + chr4_4:62592702-62592721 Msa0693660:CDS 35.0%
GATTTGTCCTCTACTGTATA+TGG + chr4_4:62592917-62592936 Msa0693660:CDS 35.0%
GGATATAATGTGTATCCTTG+AGG - chr4_4:62593040-62593059 None:intergenic 35.0%
GCATATTCAACATGACATTG+TGG + chr4_4:62593072-62593091 Msa0693660:CDS 35.0%
ATCCAAGATATGATGCTACA+TGG + chr4_4:62593121-62593140 Msa0693660:CDS 35.0%
!! TCTGTTGAATCATTTTTGGG+AGG - chr4_4:62593184-62593203 None:intergenic 35.0%
TTATGCCTCTTCTCTTCTCA+AGG + chr4_4:62589314-62589333 Msa0693660:intron 40.0%
GAGTATGTATACCTTCGGTA+GGG - chr4_4:62589889-62589908 None:intergenic 40.0%
TGAGTATGTATACCTTCGGT+AGG - chr4_4:62589890-62589909 None:intergenic 40.0%
TCACAGAAATCCTCTTCTCT+CGG + chr4_4:62589907-62589926 Msa0693660:intron 40.0%
! GCATTTTGCAGTATTTGCTC+AGG + chr4_4:62590372-62590391 Msa0693660:CDS 40.0%
CTACTGCTTCAATCAAGTTC+GGG + chr4_4:62590562-62590581 Msa0693660:intron 40.0%
!! AGACATTAACTCTGAGGTTG+AGG + chr4_4:62590585-62590604 Msa0693660:CDS 40.0%
!! TGTTTGGGGTTGATAAACAC+AGG + chr4_4:62590892-62590911 Msa0693660:intron 40.0%
! GATGTCATCTTTAATGGGTC+GGG - chr4_4:62590927-62590946 None:intergenic 40.0%
TCTATAGCAGAGCTTGAAAC+CGG + chr4_4:62590945-62590964 Msa0693660:CDS 40.0%
GCATGTTTATTCATGGTTGC+AGG + chr4_4:62591121-62591140 Msa0693660:intron 40.0%
GTATGATCCATCAGCTATTC+AGG + chr4_4:62591172-62591191 Msa0693660:intron 40.0%
TTGGATTGCAGCCAAAATTG+TGG + chr4_4:62591242-62591261 Msa0693660:intron 40.0%
! ACCAAATCGGACCACAATTT+TGG - chr4_4:62591256-62591275 None:intergenic 40.0%
!! GTGGTCCGATTTGGTAAAAT+TGG + chr4_4:62591261-62591280 Msa0693660:intron 40.0%
!! GGTCCGATTTGGTAAAATTG+GGG + chr4_4:62591263-62591282 Msa0693660:intron 40.0%
GTTTCTTGAGGGATTCTCTT+GGG + chr4_4:62591520-62591539 Msa0693660:intron 40.0%
! CAATGATTTTCACTCACCCA+AGG - chr4_4:62591566-62591585 None:intergenic 40.0%
! TCCCTTAAAGTTGGTCAAGT+TGG + chr4_4:62591723-62591742 Msa0693660:intron 40.0%
GTCCAACTTGACCAACTTTA+AGG - chr4_4:62591728-62591747 None:intergenic 40.0%
CGATCTGGGTAAACATTTCT+TGG + chr4_4:62591748-62591767 Msa0693660:intron 40.0%
!!! GGACATGTATTTTGAAACGG+AGG - chr4_4:62592227-62592246 None:intergenic 40.0%
!!! GGACATGTATTTTGAAACGG+AGG + chr4_4:62592227-62592246 Msa0693660:intron 40.0%
CTAACATTCTCGAAAGAGGT+CGG - chr4_4:62592646-62592665 None:intergenic 40.0%
CCAACTAACATTCTCGAAAG+AGG - chr4_4:62592650-62592669 None:intergenic 40.0%
CCTCTTTCGAGAATGTTAGT+TGG + chr4_4:62592647-62592666 Msa0693660:CDS 40.0%
AATGTTAGTTGGCTGCAAGA+TGG + chr4_4:62592658-62592677 Msa0693660:CDS 40.0%
TCAAATGTTGTTGATCCACG+AGG + chr4_4:62592962-62592981 Msa0693660:CDS 40.0%
GCTTGAATGTTTCCATCGTT+TGG - chr4_4:62593013-62593032 None:intergenic 40.0%
ACGATGGAAACATTCAAGCA+TGG + chr4_4:62593014-62593033 Msa0693660:CDS 40.0%
TGAATATGCTGCTGATGTTG+AGG - chr4_4:62593061-62593080 None:intergenic 40.0%
GTCCATGTAGCATCATATCT+TGG - chr4_4:62593126-62593145 None:intergenic 40.0%
ATCAGCCTTGAGAAGAGAAG+AGG - chr4_4:62589322-62589341 None:intergenic 45.0%
ACAGAAGAATGGGTGAGAGA+AGG - chr4_4:62589933-62589952 None:intergenic 45.0%
TCAGGATACTTCAGCAGTTG+AGG + chr4_4:62590390-62590409 Msa0693660:CDS 45.0%
TTCGGGAGACATTAACTCTG+AGG + chr4_4:62590579-62590598 Msa0693660:CDS 45.0%
GCCAAAATTGTGGTCCGATT+TGG + chr4_4:62591252-62591271 Msa0693660:intron 45.0%
! TCTGATTCTTGGCCCAGTTT+TGG + chr4_4:62591286-62591305 Msa0693660:intron 45.0%
!! AGGAGGTAACTTTAGGGTTG+AGG + chr4_4:62591484-62591503 Msa0693660:intron 45.0%
!! GGAGGTAACTTTAGGGTTGA+GGG + chr4_4:62591485-62591504 Msa0693660:intron 45.0%
AGGGTTGAGGGTCTTTGATT+AGG + chr4_4:62591497-62591516 Msa0693660:intron 45.0%
GGGTTGAGGGTCTTTGATTA+GGG + chr4_4:62591498-62591517 Msa0693660:intron 45.0%
GGTTTCTTGAGGGATTCTCT+TGG + chr4_4:62591519-62591538 Msa0693660:intron 45.0%
TTGAGGGATTCTCTTGGGTT+GGG + chr4_4:62591525-62591544 Msa0693660:intron 45.0%
TGAAACCTGAGAGGATCCAT+AGG - chr4_4:62592721-62592740 None:intergenic 45.0%
GTTGTTGATCCACGAGGTAT+AGG + chr4_4:62592968-62592987 Msa0693660:CDS 45.0%
AACATTCAAGCATGGCCTCA+AGG + chr4_4:62593022-62593041 Msa0693660:CDS 45.0%
TCAACTTGTGAGGCAGTGAT+TGG - chr4_4:62593160-62593179 None:intergenic 45.0%
TTTGGGAGGTTCAACTTGTG+AGG - chr4_4:62593170-62593189 None:intergenic 45.0%
CATGAAGCTGGTGATTAGGT+TGG - chr4_4:62593225-62593244 None:intergenic 45.0%
CAACCTAATCACCAGCTTCA+TGG + chr4_4:62593223-62593242 Msa0693660:CDS 45.0%
TGACCATGAAGCTGGTGATT+AGG - chr4_4:62593229-62593248 None:intergenic 45.0%
! GCAATGGTTTGTGGCTCGTA+AGG + chr4_4:62589436-62589455 Msa0693660:intron 50.0%
!! TTGCAGGGGTATTCAGAGCA+AGG + chr4_4:62590087-62590106 Msa0693660:intron 50.0%
AGAAACCTTGGCACGTGTCA+TGG + chr4_4:62590983-62591002 Msa0693660:CDS 50.0%
CTTGAGGGATTCTCTTGGGT+TGG + chr4_4:62591524-62591543 Msa0693660:intron 50.0%
!! TTGGTCAAGTTGGACCGATC+TGG + chr4_4:62591733-62591752 Msa0693660:intron 50.0%
!! TGGTCAAGTTGGACCGATCT+GGG + chr4_4:62591734-62591753 Msa0693660:intron 50.0%
GTTAGTTGGCTGCAAGATGG+TGG + chr4_4:62592661-62592680 Msa0693660:CDS 50.0%
CATCGTTTGGATTTGCCACG+TGG - chr4_4:62593000-62593019 None:intergenic 50.0%
CACGTGGCAAATCCAAACGA+TGG + chr4_4:62592998-62593017 Msa0693660:CDS 50.0%
TTCCTGAGCTACCCTACCGA+AGG + chr4_4:62589875-62589894 Msa0693660:CDS 55.0%
TACCTTCGGTAGGGTAGCTC+AGG - chr4_4:62589880-62589899 None:intergenic 55.0%
TGAGAGAAGGCCGAGAGAAG+AGG - chr4_4:62589920-62589939 None:intergenic 55.0%
!! CAGGGGTATTCAGAGCAAGG+AGG + chr4_4:62590090-62590109 Msa0693660:intron 55.0%
TCTCTCCATGACACGTGCCA+AGG - chr4_4:62590991-62591010 None:intergenic 55.0%
GGCACGTGTCATGGAGAGAA+AGG + chr4_4:62590992-62591011 Msa0693660:CDS 55.0%
CAGCTCCTATGGATCCTCTC+AGG + chr4_4:62592713-62592732 Msa0693660:CDS 55.0%
TGGCACTCTCCTATACCTCG+TGG - chr4_4:62592980-62592999 None:intergenic 55.0%
!! AGGTATAGGAGAGTGCCACG+TGG + chr4_4:62592982-62593001 Msa0693660:CDS 55.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 62589042 62593252 62589042 ID=Msa0693660;Name=Msa0693660
chr4_4 mRNA 62589042 62593252 62589042 ID=Msa0693660-mRNA-1;Parent=Msa0693660;Name=Msa0693660-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|0.87|0.88|9|0|325
chr4_4 exon 62589042 62589226 62589042 ID=Msa0693660-mRNA-1:exon:17587;Parent=Msa0693660-mRNA-1
chr4_4 exon 62589695 62589748 62589695 ID=Msa0693660-mRNA-1:exon:17588;Parent=Msa0693660-mRNA-1
chr4_4 exon 62589864 62589896 62589864 ID=Msa0693660-mRNA-1:exon:17589;Parent=Msa0693660-mRNA-1
chr4_4 exon 62590364 62590444 62590364 ID=Msa0693660-mRNA-1:exon:17590;Parent=Msa0693660-mRNA-1
chr4_4 exon 62590579 62590606 62590579 ID=Msa0693660-mRNA-1:exon:17591;Parent=Msa0693660-mRNA-1
chr4_4 exon 62590743 62590804 62590743 ID=Msa0693660-mRNA-1:exon:17592;Parent=Msa0693660-mRNA-1
chr4_4 exon 62590914 62591013 62590914 ID=Msa0693660-mRNA-1:exon:17593;Parent=Msa0693660-mRNA-1
chr4_4 exon 62592637 62592734 62592637 ID=Msa0693660-mRNA-1:exon:17594;Parent=Msa0693660-mRNA-1
chr4_4 exon 62592916 62593252 62592916 ID=Msa0693660-mRNA-1:exon:17595;Parent=Msa0693660-mRNA-1
chr4_4 CDS 62589042 62589226 62589042 ID=Msa0693660-mRNA-1:cds;Parent=Msa0693660-mRNA-1
chr4_4 CDS 62589695 62589748 62589695 ID=Msa0693660-mRNA-1:cds;Parent=Msa0693660-mRNA-1
chr4_4 CDS 62589864 62589896 62589864 ID=Msa0693660-mRNA-1:cds;Parent=Msa0693660-mRNA-1
chr4_4 CDS 62590364 62590444 62590364 ID=Msa0693660-mRNA-1:cds;Parent=Msa0693660-mRNA-1
chr4_4 CDS 62590579 62590606 62590579 ID=Msa0693660-mRNA-1:cds;Parent=Msa0693660-mRNA-1
chr4_4 CDS 62590743 62590804 62590743 ID=Msa0693660-mRNA-1:cds;Parent=Msa0693660-mRNA-1
chr4_4 CDS 62590914 62591013 62590914 ID=Msa0693660-mRNA-1:cds;Parent=Msa0693660-mRNA-1
chr4_4 CDS 62592637 62592734 62592637 ID=Msa0693660-mRNA-1:cds;Parent=Msa0693660-mRNA-1
chr4_4 CDS 62592916 62593252 62592916 ID=Msa0693660-mRNA-1:cds;Parent=Msa0693660-mRNA-1
Gene Sequence

>Msa0693660

ATGGGTCGTGTTAAACTTGAGATAAAAAGAATAGAGAACACAGTGAATCGACAAGTTACATATTCAAAACGTAGAAATGGTCTCATTAAGAAAGCTTATGAGTTATCAATCCTTTGTGATATTGATATTGCTCTTATAATGTTTTCTCCATCAAATCGTCTTAATCATTTTTCAGGTAAAAGAAGGATAGAGGATGTTTTAACTCGTTACATTAATATTCCTGACCAAGAAAGAGATAATGCTGTAAGTTTTCCTGAGCTACCCTACCGAAGTTTATATTGCATTTTGCAGTATTTGCTCAGGATACTTCAGCAGTTGAGGAATGAAAATGACATAGCCCTTCATATGTCCAATTCGGGAGACATTAACTCTGAGGTTGAGGATCTCCAACAAGAAGTTAGTAGATTACAACAACAACTTCAAATGGTAGAGGAGCAAATAAGGAAATATGAACCCGACCCATTAAAGATGACATCTATAGCAGAGCTTGAAACCGGTGAAAAAAACGTAGTAGAAACCTTGGCACGTGTCATGGAGAGAAAGGGGATGCCGACCTCTTTCGAGAATGTTAGTTGGCTGCAAGATGGTGGTCAGAACCAACCCCAAATTTTTGATACATCAGCTCCTATGGATCCTCTCAGGGATTTGTCCTCTACTGTATATGGTTCATTTTCACAAGGGACGAGTTCAAATGTTGTTGATCCACGAGGTATAGGAGAGTGCCACGTGGCAAATCCAAACGATGGAAACATTCAAGCATGGCCTCAAGGATACACATTATATCCTCAACATCAGCAGCATATTCAACATGACATTGTGGGAACTGATCATCATCATCATCACAACATCCAAGATATGATGCTACATGGACAAATGAACATGCCAATCACTGCCTCACAAGTTGAACCTCCCAAAAATGATTCAACAGAATATGATCAATGTAGTAACCAACCTAATCACCAGCTTCATGGTCAATGA
Protein sequence

>Msa0693660

MGRVKLEIKRIENTVNRQVTYSKRRNGLIKKAYELSILCDIDIALIMFSPSNRLNHFSGKRRIEDVLTRYINIPDQERDNAVSFPELPYRSLYCILQYLLRILQQLRNENDIALHMSNSGDINSEVEDLQQEVSRLQQQLQMVEEQIRKYEPDPLKMTSIAELETGEKNVVETLARVMERKGMPTSFENVSWLQDGGQNQPQIFDTSAPMDPLRDLSSTVYGSFSQGTSSNVVDPRGIGECHVANPNDGNIQAWPQGYTLYPQHQQHIQHDIVGTDHHHHHNIQDMMLHGQMNMPITASQVEPPKNDSTEYDQCSNQPNHQLHGQ*