Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0694030 | XP_003607938.1 | 91.803 | 305 | 21 | 2 | 1 | 301 | 1 | 305 | 0.0 | 523 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0694030 | sp|Q9FXA3|BH095_ARATH | 43.519 | 216 | 84 | 5 | 88 | 275 | 70 | 275 | 9.12e-41 | 146 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0694030 | G7JK25 | 91.803 | 305 | 21 | 2 | 1 | 301 | 1 | 305 | 0.0 | 523 |
Gene ID | Type | Classification |
---|---|---|
Msa0694030 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0694030 | MtrunA17_Chr4g0044621 | 91.803 | 305 | 21 | 2 | 1 | 301 | 1 | 305 | 0.0 | 523 |
Msa0694030 | MtrunA17_Chr4g0044611 | 89.247 | 279 | 25 | 3 | 1 | 275 | 1 | 278 | 6.37e-165 | 460 |
Msa0694030 | MtrunA17_Chr4g0042511 | 43.841 | 276 | 121 | 6 | 1 | 275 | 1 | 243 | 1.12e-50 | 168 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0694030 | AT1G49770.1 | 43.519 | 216 | 84 | 5 | 88 | 275 | 70 | 275 | 9.27e-42 | 146 |
Find 62 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCATTGATTCCTTCTTTC+TGG | 0.014189 | 4_4:-63275142 | None:intergenic |
GCTTCCTGAACTTCCTTCTA+AGG | 0.247562 | 4_4:+63275346 | Msa0694030:CDS |
CCTAAGTTATGATTAGAGTT+TGG | 0.258500 | 4_4:-63275083 | None:intergenic |
GAATGCTTCCCTTGATTCAT+AGG | 0.298456 | 4_4:-63276712 | None:intergenic |
TGGAAACTTCTACATGATTA+TGG | 0.312756 | 4_4:+63276995 | Msa0694030:CDS |
CTAAGTTATGATTAGAGTTT+GGG | 0.313394 | 4_4:-63275082 | None:intergenic |
AAATGAATTTATACCTTAGA+AGG | 0.315805 | 4_4:-63275359 | None:intergenic |
ATTCCTTCTTTCTGGTTCAA+TGG | 0.328467 | 4_4:-63275134 | None:intergenic |
ATGTTCAAACAAATTTCATT+TGG | 0.345668 | 4_4:+63275036 | Msa0694030:CDS |
TGTTCAAACAAATTTCATTT+GGG | 0.373120 | 4_4:+63275037 | Msa0694030:CDS |
TATACCTTAGAAGGAAGTTC+AGG | 0.398193 | 4_4:-63275350 | None:intergenic |
TCTCTTGACCACAATTGCTT+TGG | 0.400979 | 4_4:+63276917 | Msa0694030:CDS |
GACCACAATTGCTTTGGTGC+TGG | 0.421423 | 4_4:+63276923 | Msa0694030:CDS |
CCGATTTCTCTTCTTGCTCA+CGG | 0.425778 | 4_4:-63275174 | None:intergenic |
CCGTGAGCAAGAAGAGAAAT+CGG | 0.430632 | 4_4:+63275174 | Msa0694030:CDS |
CGATTTCTCTTCTTGCTCAC+GGG | 0.436559 | 4_4:-63275173 | None:intergenic |
AACATTATGTGCAATGCAAA+TGG | 0.441341 | 4_4:+63276975 | Msa0694030:CDS |
AGTGAGAATAATATTGCAAC+TGG | 0.447083 | 4_4:+63275215 | Msa0694030:CDS |
GAGAAAGGAGAAAGAAAATG+AGG | 0.462906 | 4_4:+63275297 | Msa0694030:CDS |
CGTGAGCAAGAAGAGAAATC+GGG | 0.482173 | 4_4:+63275175 | Msa0694030:CDS |
AGGTGAGAGTAGCAAACAAT+TGG | 0.494891 | 4_4:+63275103 | Msa0694030:CDS |
CTCCAGCACCAAAGCAATTG+TGG | 0.505022 | 4_4:-63276925 | None:intergenic |
ATTTGCATTGCACATAATGT+TGG | 0.516349 | 4_4:-63276973 | None:intergenic |
CCAAACTCTAATCATAACTT+AGG | 0.519326 | 4_4:+63275083 | Msa0694030:CDS |
AATGCTTCCCTTGATTCATA+GGG | 0.521692 | 4_4:-63276711 | None:intergenic |
TCATTTGGGAAAATCATCCA+TGG | 0.525272 | 4_4:+63275051 | Msa0694030:CDS |
CAGAAAGAAGGAATCAATGA+AGG | 0.527899 | 4_4:+63275143 | Msa0694030:CDS |
CTCAAATCTGTATCCCCACT+GGG | 0.528728 | 4_4:+63276654 | Msa0694030:CDS |
AAACCTACATGTTGTGGTGG+AGG | 0.530627 | 4_4:-63276810 | None:intergenic |
AGTGGCATCCCTATGAATCA+AGG | 0.535671 | 4_4:+63276703 | Msa0694030:CDS |
CATTTGGGAAAATCATCCAT+GGG | 0.537456 | 4_4:+63275052 | Msa0694030:CDS |
ATTTGTGCAACTAAGAAGCC+TGG | 0.543272 | 4_4:+63276894 | Msa0694030:CDS |
CAGGCAAAACAAGCTTCACA+TGG | 0.544546 | 4_4:+63277145 | Msa0694030:intron |
ACTCAAATCTGTATCCCCAC+TGG | 0.549600 | 4_4:+63276653 | Msa0694030:CDS |
CAAGAAGAGAAATCGGGGTG+GGG | 0.550377 | 4_4:+63275181 | Msa0694030:CDS |
GAAGCATTCTTAGCTGATCA+AGG | 0.551542 | 4_4:+63276726 | Msa0694030:CDS |
GTTCAGGAAGCAAGGCATGA+AGG | 0.554482 | 4_4:-63275334 | None:intergenic |
AGAAGGAAGTTCAGGAAGCA+AGG | 0.555351 | 4_4:-63275342 | None:intergenic |
ACATATTGACTGAAAGAGAA+AGG | 0.558067 | 4_4:+63275282 | Msa0694030:CDS |
AAACCATTGAACCAGAAAGA+AGG | 0.568529 | 4_4:+63275131 | Msa0694030:CDS |
GCAATTGTGGTCAAGAGACC+AGG | 0.573021 | 4_4:-63276912 | None:intergenic |
GCAAGAAGAGAAATCGGGGT+GGG | 0.581863 | 4_4:+63275180 | Msa0694030:CDS |
CAAGTTATTATTATAACTTG+AGG | 0.582073 | 4_4:-63276751 | None:intergenic |
TTGATCATGATCTACACTCA+TGG | 0.585566 | 4_4:-63275012 | None:intergenic |
TTCACATGGCGCAAACTCGA+TGG | 0.594689 | 4_4:+63277159 | Msa0694030:CDS |
CAGATGACTCACTCCCCAGT+GGG | 0.602188 | 4_4:-63276668 | None:intergenic |
TTACCTCCACCACAACATGT+AGG | 0.611747 | 4_4:+63276807 | Msa0694030:CDS |
CTTCACTGCTGCATCCACAA+TGG | 0.612064 | 4_4:-63276574 | None:intergenic |
GTGGCATCCCTATGAATCAA+GGG | 0.614055 | 4_4:+63276704 | Msa0694030:CDS |
GGCTGATAAATCAACCATTG+TGG | 0.629857 | 4_4:+63276560 | Msa0694030:intron |
ACATGGCGCAAACTCGATGG+AGG | 0.652836 | 4_4:+63277162 | Msa0694030:CDS |
TTAAAACCTACATGTTGTGG+TGG | 0.654855 | 4_4:-63276813 | None:intergenic |
AATGTTGTACTGAACATATG+TGG | 0.655921 | 4_4:+63276852 | Msa0694030:CDS |
CAGCTTTAGAAGTTATGACG+CGG | 0.659283 | 4_4:+63277200 | Msa0694030:CDS |
GAGTTTGGGAGATCATCCCA+TGG | 0.666665 | 4_4:-63275068 | None:intergenic |
GTGAGCAAGAAGAGAAATCG+GGG | 0.694598 | 4_4:+63275176 | Msa0694030:CDS |
ACAGATGACTCACTCCCCAG+TGG | 0.704607 | 4_4:-63276669 | None:intergenic |
AGCAAGAAGAGAAATCGGGG+TGG | 0.706863 | 4_4:+63275179 | Msa0694030:CDS |
AGATGACTCACTCCCCAGTG+GGG | 0.742486 | 4_4:-63276667 | None:intergenic |
CATCTGTAATCAACTCACAG+TGG | 0.763842 | 4_4:+63276685 | Msa0694030:CDS |
TCAAATCTGTATCCCCACTG+GGG | 0.765141 | 4_4:+63276655 | Msa0694030:CDS |
GTTGTACTGAACATATGTGG+TGG | 0.767818 | 4_4:+63276855 | Msa0694030:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATGATTTTGATAAACTTTAA+GGG | - | chr4_4:63275465-63275484 | None:intergenic | 15.0% |
!!! | TATGATTTTGATAAACTTTA+AGG | - | chr4_4:63275466-63275485 | None:intergenic | 15.0% |
!! | ATTAATTAGTTCAATAATCA+AGG | - | chr4_4:63275844-63275863 | None:intergenic | 15.0% |
!!! | TTGATAGTATTCATTTATTT+AGG | + | chr4_4:63276217-63276236 | Msa0694030:intron | 15.0% |
!! | TGATAGTATTCATTTATTTA+GGG | + | chr4_4:63276218-63276237 | Msa0694030:intron | 15.0% |
!!! | ACTGAAATAAATAATTTTCT+TGG | + | chr4_4:63276423-63276442 | Msa0694030:intron | 15.0% |
!!! | ATTTGATTTTGATATTTTAC+AGG | + | chr4_4:63276539-63276558 | Msa0694030:intron | 15.0% |
!! | TAAAAATCTTGAAGAAATTA+AGG | + | chr4_4:63276602-63276621 | Msa0694030:CDS | 15.0% |
!! | GATATTAAAAAATGATAAAG+AGG | - | chr4_4:63277046-63277065 | None:intergenic | 15.0% |
!!! | ATGATTTTGATAAACTTTAA+GGG | - | chr4_4:63275465-63275484 | None:intergenic | 15.0% |
!!! | TATGATTTTGATAAACTTTA+AGG | - | chr4_4:63275466-63275485 | None:intergenic | 15.0% |
!! | ATTAATTAGTTCAATAATCA+AGG | - | chr4_4:63275844-63275863 | None:intergenic | 15.0% |
!!! | TTGATAGTATTCATTTATTT+AGG | + | chr4_4:63276217-63276236 | Msa0694030:intron | 15.0% |
!! | TGATAGTATTCATTTATTTA+GGG | + | chr4_4:63276218-63276237 | Msa0694030:intron | 15.0% |
!!! | ACTGAAATAAATAATTTTCT+TGG | + | chr4_4:63276423-63276442 | Msa0694030:intron | 15.0% |
!!! | ATTTGATTTTGATATTTTAC+AGG | + | chr4_4:63276539-63276558 | Msa0694030:intron | 15.0% |
!! | TAAAAATCTTGAAGAAATTA+AGG | + | chr4_4:63276602-63276621 | Msa0694030:CDS | 15.0% |
!! | GATATTAAAAAATGATAAAG+AGG | - | chr4_4:63277046-63277065 | None:intergenic | 15.0% |
!! | ATGTTCAAACAAATTTCATT+TGG | + | chr4_4:63275036-63275055 | Msa0694030:CDS | 20.0% |
!! | TGTTCAAACAAATTTCATTT+GGG | + | chr4_4:63275037-63275056 | Msa0694030:CDS | 20.0% |
!! | AAATGAATTTATACCTTAGA+AGG | - | chr4_4:63275362-63275381 | None:intergenic | 20.0% |
!!! | TGATTTTGATAAACTTTAAG+GGG | - | chr4_4:63275464-63275483 | None:intergenic | 20.0% |
!! | GCAAATACAAAAATGTATTT+AGG | + | chr4_4:63275527-63275546 | Msa0694030:intron | 20.0% |
!!! | GAAATAAATAATTTTCTTGG+AGG | + | chr4_4:63276426-63276445 | Msa0694030:intron | 20.0% |
!! | CTACAATTACTTATTTACTA+AGG | + | chr4_4:63276506-63276525 | Msa0694030:intron | 20.0% |
!! | CAAGTTATTATTATAACTTG+AGG | - | chr4_4:63276754-63276773 | None:intergenic | 20.0% |
!! | ATGTTCAAACAAATTTCATT+TGG | + | chr4_4:63275036-63275055 | Msa0694030:CDS | 20.0% |
!! | TGTTCAAACAAATTTCATTT+GGG | + | chr4_4:63275037-63275056 | Msa0694030:CDS | 20.0% |
!! | AAATGAATTTATACCTTAGA+AGG | - | chr4_4:63275362-63275381 | None:intergenic | 20.0% |
!!! | TGATTTTGATAAACTTTAAG+GGG | - | chr4_4:63275464-63275483 | None:intergenic | 20.0% |
!! | GCAAATACAAAAATGTATTT+AGG | + | chr4_4:63275527-63275546 | Msa0694030:intron | 20.0% |
!!! | GAAATAAATAATTTTCTTGG+AGG | + | chr4_4:63276426-63276445 | Msa0694030:intron | 20.0% |
!! | CTACAATTACTTATTTACTA+AGG | + | chr4_4:63276506-63276525 | Msa0694030:intron | 20.0% |
!! | CAAGTTATTATTATAACTTG+AGG | - | chr4_4:63276754-63276773 | None:intergenic | 20.0% |
! | CTAAGTTATGATTAGAGTTT+GGG | - | chr4_4:63275085-63275104 | None:intergenic | 25.0% |
!! | TTTCTATATCTTTTCCGATT+TGG | + | chr4_4:63275505-63275524 | Msa0694030:intron | 25.0% |
!! | CATTTTTGTATTTGCCAAAT+CGG | - | chr4_4:63275522-63275541 | None:intergenic | 25.0% |
! | TCATATTGTAACTCAATTGT+TGG | - | chr4_4:63276054-63276073 | None:intergenic | 25.0% |
! | CAATTGTCAGTTAAATCTTA+CGG | + | chr4_4:63276090-63276109 | Msa0694030:intron | 25.0% |
! | GTGGACACAATAAAAAAAAA+TGG | + | chr4_4:63276140-63276159 | Msa0694030:intron | 25.0% |
!!! | CTTTTCAAGTGAGAATATAA+TGG | - | chr4_4:63276166-63276185 | None:intergenic | 25.0% |
!!! | CCATTGACTTAAATTTTCTT+AGG | - | chr4_4:63276370-63276389 | None:intergenic | 25.0% |
! | CCTAAGAAAATTTAAGTCAA+TGG | + | chr4_4:63276367-63276386 | Msa0694030:intron | 25.0% |
! | AAAATTTAAGTCAATGGCAT+TGG | + | chr4_4:63276373-63276392 | Msa0694030:intron | 25.0% |
!!! | AACATGTAGGTTTTAAAACA+TGG | + | chr4_4:63276820-63276839 | Msa0694030:CDS | 25.0% |
! | CTAAGTTATGATTAGAGTTT+GGG | - | chr4_4:63275085-63275104 | None:intergenic | 25.0% |
!! | TTTCTATATCTTTTCCGATT+TGG | + | chr4_4:63275505-63275524 | Msa0694030:intron | 25.0% |
!! | CATTTTTGTATTTGCCAAAT+CGG | - | chr4_4:63275522-63275541 | None:intergenic | 25.0% |
! | TCATATTGTAACTCAATTGT+TGG | - | chr4_4:63276054-63276073 | None:intergenic | 25.0% |
! | CAATTGTCAGTTAAATCTTA+CGG | + | chr4_4:63276090-63276109 | Msa0694030:intron | 25.0% |
! | GTGGACACAATAAAAAAAAA+TGG | + | chr4_4:63276140-63276159 | Msa0694030:intron | 25.0% |
!!! | CTTTTCAAGTGAGAATATAA+TGG | - | chr4_4:63276166-63276185 | None:intergenic | 25.0% |
!!! | CCATTGACTTAAATTTTCTT+AGG | - | chr4_4:63276370-63276389 | None:intergenic | 25.0% |
! | CCTAAGAAAATTTAAGTCAA+TGG | + | chr4_4:63276367-63276386 | Msa0694030:intron | 25.0% |
! | AAAATTTAAGTCAATGGCAT+TGG | + | chr4_4:63276373-63276392 | Msa0694030:intron | 25.0% |
!!! | AACATGTAGGTTTTAAAACA+TGG | + | chr4_4:63276820-63276839 | Msa0694030:CDS | 25.0% |
CCTAAGTTATGATTAGAGTT+TGG | - | chr4_4:63275086-63275105 | None:intergenic | 30.0% | |
CCAAACTCTAATCATAACTT+AGG | + | chr4_4:63275083-63275102 | Msa0694030:CDS | 30.0% | |
AGTGAGAATAATATTGCAAC+TGG | + | chr4_4:63275215-63275234 | Msa0694030:CDS | 30.0% | |
! | ACATATTGACTGAAAGAGAA+AGG | + | chr4_4:63275282-63275301 | Msa0694030:CDS | 30.0% |
! | GATAAACTTTAAGGGGAAAA+AGG | - | chr4_4:63275457-63275476 | None:intergenic | 30.0% |
!!! | TTTTTTTAGCCTGATCAAGA+AGG | - | chr4_4:63275598-63275617 | None:intergenic | 30.0% |
AAACAACACTCATATAAGCT+AGG | + | chr4_4:63275625-63275644 | Msa0694030:intron | 30.0% | |
AACAACACTCATATAAGCTA+GGG | + | chr4_4:63275626-63275645 | Msa0694030:intron | 30.0% | |
TCCAAGTTTGACATTGTATA+CGG | - | chr4_4:63275790-63275809 | None:intergenic | 30.0% | |
ACCACTTAAGTTCAATTGTT+TGG | + | chr4_4:63275993-63276012 | Msa0694030:intron | 30.0% | |
ACCAAACAATTGAACTTAAG+TGG | - | chr4_4:63275997-63276016 | None:intergenic | 30.0% | |
TAGTTAAAGAGATTAGAGAG+TGG | + | chr4_4:63276121-63276140 | Msa0694030:intron | 30.0% | |
AATAAAGACTTCAAGTCCAT+GGG | - | chr4_4:63276263-63276282 | None:intergenic | 30.0% | |
AAATAAAGACTTCAAGTCCA+TGG | - | chr4_4:63276264-63276283 | None:intergenic | 30.0% | |
!!! | GTTTTAAAACCTACATGTTG+TGG | - | chr4_4:63276819-63276838 | None:intergenic | 30.0% |
AATGTTGTACTGAACATATG+TGG | + | chr4_4:63276852-63276871 | Msa0694030:CDS | 30.0% | |
ATTTGCATTGCACATAATGT+TGG | - | chr4_4:63276976-63276995 | None:intergenic | 30.0% | |
AACATTATGTGCAATGCAAA+TGG | + | chr4_4:63276975-63276994 | Msa0694030:CDS | 30.0% | |
TGGAAACTTCTACATGATTA+TGG | + | chr4_4:63276995-63277014 | Msa0694030:CDS | 30.0% | |
! | AGAAGGTTTGAAACTTACAT+GGG | - | chr4_4:63277021-63277040 | None:intergenic | 30.0% |
AAAATGATAAAGAGGAGAGA+AGG | - | chr4_4:63277038-63277057 | None:intergenic | 30.0% | |
!!! | TTGAATTGTGTTGATTTTGC+AGG | + | chr4_4:63277126-63277145 | Msa0694030:intron | 30.0% |
CCTAAGTTATGATTAGAGTT+TGG | - | chr4_4:63275086-63275105 | None:intergenic | 30.0% | |
CCAAACTCTAATCATAACTT+AGG | + | chr4_4:63275083-63275102 | Msa0694030:CDS | 30.0% | |
AGTGAGAATAATATTGCAAC+TGG | + | chr4_4:63275215-63275234 | Msa0694030:CDS | 30.0% | |
! | ACATATTGACTGAAAGAGAA+AGG | + | chr4_4:63275282-63275301 | Msa0694030:CDS | 30.0% |
! | GATAAACTTTAAGGGGAAAA+AGG | - | chr4_4:63275457-63275476 | None:intergenic | 30.0% |
!!! | TTTTTTTAGCCTGATCAAGA+AGG | - | chr4_4:63275598-63275617 | None:intergenic | 30.0% |
AAACAACACTCATATAAGCT+AGG | + | chr4_4:63275625-63275644 | Msa0694030:intron | 30.0% | |
AACAACACTCATATAAGCTA+GGG | + | chr4_4:63275626-63275645 | Msa0694030:intron | 30.0% | |
TCCAAGTTTGACATTGTATA+CGG | - | chr4_4:63275790-63275809 | None:intergenic | 30.0% | |
ACCACTTAAGTTCAATTGTT+TGG | + | chr4_4:63275993-63276012 | Msa0694030:intron | 30.0% | |
ACCAAACAATTGAACTTAAG+TGG | - | chr4_4:63275997-63276016 | None:intergenic | 30.0% | |
TAGTTAAAGAGATTAGAGAG+TGG | + | chr4_4:63276121-63276140 | Msa0694030:intron | 30.0% | |
AATAAAGACTTCAAGTCCAT+GGG | - | chr4_4:63276263-63276282 | None:intergenic | 30.0% | |
AAATAAAGACTTCAAGTCCA+TGG | - | chr4_4:63276264-63276283 | None:intergenic | 30.0% | |
!!! | GTTTTAAAACCTACATGTTG+TGG | - | chr4_4:63276819-63276838 | None:intergenic | 30.0% |
AATGTTGTACTGAACATATG+TGG | + | chr4_4:63276852-63276871 | Msa0694030:CDS | 30.0% | |
ATTTGCATTGCACATAATGT+TGG | - | chr4_4:63276976-63276995 | None:intergenic | 30.0% | |
AACATTATGTGCAATGCAAA+TGG | + | chr4_4:63276975-63276994 | Msa0694030:CDS | 30.0% | |
TGGAAACTTCTACATGATTA+TGG | + | chr4_4:63276995-63277014 | Msa0694030:CDS | 30.0% | |
! | AGAAGGTTTGAAACTTACAT+GGG | - | chr4_4:63277021-63277040 | None:intergenic | 30.0% |
AAAATGATAAAGAGGAGAGA+AGG | - | chr4_4:63277038-63277057 | None:intergenic | 30.0% | |
!!! | TTGAATTGTGTTGATTTTGC+AGG | + | chr4_4:63277126-63277145 | Msa0694030:intron | 30.0% |
TTGATCATGATCTACACTCA+TGG | - | chr4_4:63275015-63275034 | None:intergenic | 35.0% | |
TCATTTGGGAAAATCATCCA+TGG | + | chr4_4:63275051-63275070 | Msa0694030:CDS | 35.0% | |
CATTTGGGAAAATCATCCAT+GGG | + | chr4_4:63275052-63275071 | Msa0694030:CDS | 35.0% | |
AAACCATTGAACCAGAAAGA+AGG | + | chr4_4:63275131-63275150 | Msa0694030:CDS | 35.0% | |
!! | ATTCCTTCTTTCTGGTTCAA+TGG | - | chr4_4:63275137-63275156 | None:intergenic | 35.0% |
!! | CTTCATTGATTCCTTCTTTC+TGG | - | chr4_4:63275145-63275164 | None:intergenic | 35.0% |
CAGAAAGAAGGAATCAATGA+AGG | + | chr4_4:63275143-63275162 | Msa0694030:CDS | 35.0% | |
GAGAAAGGAGAAAGAAAATG+AGG | + | chr4_4:63275297-63275316 | Msa0694030:CDS | 35.0% | |
TATACCTTAGAAGGAAGTTC+AGG | - | chr4_4:63275353-63275372 | None:intergenic | 35.0% | |
TTTAAGAACCCTAGCTAGAT+GGG | - | chr4_4:63275701-63275720 | None:intergenic | 35.0% | |
ATCTAGCTAGGGTTCTTAAA+GGG | + | chr4_4:63275701-63275720 | Msa0694030:intron | 35.0% | |
TCCTTCTTGTTACCATAGAT+AGG | + | chr4_4:63275756-63275775 | Msa0694030:intron | 35.0% | |
CCTTCTTGTTACCATAGATA+GGG | + | chr4_4:63275757-63275776 | Msa0694030:intron | 35.0% | |
CCAAGTTTGACATTGTATAC+GGG | - | chr4_4:63275789-63275808 | None:intergenic | 35.0% | |
! | TTTTTGTGTCAACCTCAGTT+CGG | + | chr4_4:63275880-63275899 | Msa0694030:intron | 35.0% |
TACCAAAAATCGATCCATTC+AGG | + | chr4_4:63275921-63275940 | Msa0694030:intron | 35.0% | |
!! | TACCTGAATGGATCGATTTT+TGG | - | chr4_4:63275926-63275945 | None:intergenic | 35.0% |
AAAATCGATCCATTCAGGTA+TGG | + | chr4_4:63275926-63275945 | Msa0694030:intron | 35.0% | |
GTGGTTAATGAATTCCACAA+AGG | - | chr4_4:63275978-63275997 | None:intergenic | 35.0% | |
TCAGTTAAATCTTACGGTTG+AGG | + | chr4_4:63276096-63276115 | Msa0694030:intron | 35.0% | |
! | ATTTAAGTCAATGGCATTGG+TGG | + | chr4_4:63276376-63276395 | Msa0694030:intron | 35.0% |
AATGCTTCCCTTGATTCATA+GGG | - | chr4_4:63276714-63276733 | None:intergenic | 35.0% | |
TTAAAACCTACATGTTGTGG+TGG | - | chr4_4:63276816-63276835 | None:intergenic | 35.0% | |
! | GAGAAGGTTTGAAACTTACA+TGG | - | chr4_4:63277022-63277041 | None:intergenic | 35.0% |
TTGATCATGATCTACACTCA+TGG | - | chr4_4:63275015-63275034 | None:intergenic | 35.0% | |
TCATTTGGGAAAATCATCCA+TGG | + | chr4_4:63275051-63275070 | Msa0694030:CDS | 35.0% | |
CATTTGGGAAAATCATCCAT+GGG | + | chr4_4:63275052-63275071 | Msa0694030:CDS | 35.0% | |
AAACCATTGAACCAGAAAGA+AGG | + | chr4_4:63275131-63275150 | Msa0694030:CDS | 35.0% | |
!! | ATTCCTTCTTTCTGGTTCAA+TGG | - | chr4_4:63275137-63275156 | None:intergenic | 35.0% |
!! | CTTCATTGATTCCTTCTTTC+TGG | - | chr4_4:63275145-63275164 | None:intergenic | 35.0% |
CAGAAAGAAGGAATCAATGA+AGG | + | chr4_4:63275143-63275162 | Msa0694030:CDS | 35.0% | |
GAGAAAGGAGAAAGAAAATG+AGG | + | chr4_4:63275297-63275316 | Msa0694030:CDS | 35.0% | |
TATACCTTAGAAGGAAGTTC+AGG | - | chr4_4:63275353-63275372 | None:intergenic | 35.0% | |
TTTAAGAACCCTAGCTAGAT+GGG | - | chr4_4:63275701-63275720 | None:intergenic | 35.0% | |
ATCTAGCTAGGGTTCTTAAA+GGG | + | chr4_4:63275701-63275720 | Msa0694030:intron | 35.0% | |
TCCTTCTTGTTACCATAGAT+AGG | + | chr4_4:63275756-63275775 | Msa0694030:intron | 35.0% | |
CCTTCTTGTTACCATAGATA+GGG | + | chr4_4:63275757-63275776 | Msa0694030:intron | 35.0% | |
CCAAGTTTGACATTGTATAC+GGG | - | chr4_4:63275789-63275808 | None:intergenic | 35.0% | |
! | TTTTTGTGTCAACCTCAGTT+CGG | + | chr4_4:63275880-63275899 | Msa0694030:intron | 35.0% |
TACCAAAAATCGATCCATTC+AGG | + | chr4_4:63275921-63275940 | Msa0694030:intron | 35.0% | |
!! | TACCTGAATGGATCGATTTT+TGG | - | chr4_4:63275926-63275945 | None:intergenic | 35.0% |
AAAATCGATCCATTCAGGTA+TGG | + | chr4_4:63275926-63275945 | Msa0694030:intron | 35.0% | |
GTGGTTAATGAATTCCACAA+AGG | - | chr4_4:63275978-63275997 | None:intergenic | 35.0% | |
TCAGTTAAATCTTACGGTTG+AGG | + | chr4_4:63276096-63276115 | Msa0694030:intron | 35.0% | |
! | ATTTAAGTCAATGGCATTGG+TGG | + | chr4_4:63276376-63276395 | Msa0694030:intron | 35.0% |
AATGCTTCCCTTGATTCATA+GGG | - | chr4_4:63276714-63276733 | None:intergenic | 35.0% | |
TTAAAACCTACATGTTGTGG+TGG | - | chr4_4:63276816-63276835 | None:intergenic | 35.0% | |
! | GAGAAGGTTTGAAACTTACA+TGG | - | chr4_4:63277022-63277041 | None:intergenic | 35.0% |
AGGTGAGAGTAGCAAACAAT+TGG | + | chr4_4:63275103-63275122 | Msa0694030:CDS | 40.0% | |
GAACTTTCTCCTTCTTGATC+AGG | + | chr4_4:63275586-63275605 | Msa0694030:intron | 40.0% | |
TTAAGAACCCTAGCTAGATG+GGG | - | chr4_4:63275700-63275719 | None:intergenic | 40.0% | |
! | CTTTAAGAACCCTAGCTAGA+TGG | - | chr4_4:63275702-63275721 | None:intergenic | 40.0% |
CATCTAGCTAGGGTTCTTAA+AGG | + | chr4_4:63275700-63275719 | Msa0694030:intron | 40.0% | |
TCTAGCTAGGGTTCTTAAAG+GGG | + | chr4_4:63275702-63275721 | Msa0694030:intron | 40.0% | |
AAAGGGGCAATAGATCTACT+AGG | + | chr4_4:63275718-63275737 | Msa0694030:intron | 40.0% | |
AAGGGGCAATAGATCTACTA+GGG | + | chr4_4:63275719-63275738 | Msa0694030:intron | 40.0% | |
CCCTATCTATGGTAACAAGA+AGG | - | chr4_4:63275760-63275779 | None:intergenic | 40.0% | |
TGTTACCATAGATAGGGATC+TGG | + | chr4_4:63275763-63275782 | Msa0694030:intron | 40.0% | |
CCCGTATACAATGTCAAACT+TGG | + | chr4_4:63275786-63275805 | Msa0694030:intron | 40.0% | |
TCCATTCAGGTATGGAATTC+AGG | + | chr4_4:63275934-63275953 | Msa0694030:intron | 40.0% | |
ACCTGAATTCCATACCTGAA+TGG | - | chr4_4:63275938-63275957 | None:intergenic | 40.0% | |
TGAATTCCACAAAGGACGAA+TGG | - | chr4_4:63275970-63275989 | None:intergenic | 40.0% | |
GGCTGATAAATCAACCATTG+TGG | + | chr4_4:63276560-63276579 | Msa0694030:intron | 40.0% | |
CATCTGTAATCAACTCACAG+TGG | + | chr4_4:63276685-63276704 | Msa0694030:CDS | 40.0% | |
GAATGCTTCCCTTGATTCAT+AGG | - | chr4_4:63276715-63276734 | None:intergenic | 40.0% | |
! | GAAGCATTCTTAGCTGATCA+AGG | + | chr4_4:63276726-63276745 | Msa0694030:CDS | 40.0% |
GTTGTACTGAACATATGTGG+TGG | + | chr4_4:63276855-63276874 | Msa0694030:CDS | 40.0% | |
ATTTGTGCAACTAAGAAGCC+TGG | + | chr4_4:63276894-63276913 | Msa0694030:CDS | 40.0% | |
TCTCTTGACCACAATTGCTT+TGG | + | chr4_4:63276917-63276936 | Msa0694030:CDS | 40.0% | |
!! | CAGCTTTAGAAGTTATGACG+CGG | + | chr4_4:63277200-63277219 | Msa0694030:CDS | 40.0% |
AGGTGAGAGTAGCAAACAAT+TGG | + | chr4_4:63275103-63275122 | Msa0694030:CDS | 40.0% | |
GAACTTTCTCCTTCTTGATC+AGG | + | chr4_4:63275586-63275605 | Msa0694030:intron | 40.0% | |
TTAAGAACCCTAGCTAGATG+GGG | - | chr4_4:63275700-63275719 | None:intergenic | 40.0% | |
! | CTTTAAGAACCCTAGCTAGA+TGG | - | chr4_4:63275702-63275721 | None:intergenic | 40.0% |
CATCTAGCTAGGGTTCTTAA+AGG | + | chr4_4:63275700-63275719 | Msa0694030:intron | 40.0% | |
TCTAGCTAGGGTTCTTAAAG+GGG | + | chr4_4:63275702-63275721 | Msa0694030:intron | 40.0% | |
AAAGGGGCAATAGATCTACT+AGG | + | chr4_4:63275718-63275737 | Msa0694030:intron | 40.0% | |
AAGGGGCAATAGATCTACTA+GGG | + | chr4_4:63275719-63275738 | Msa0694030:intron | 40.0% | |
CCCTATCTATGGTAACAAGA+AGG | - | chr4_4:63275760-63275779 | None:intergenic | 40.0% | |
TGTTACCATAGATAGGGATC+TGG | + | chr4_4:63275763-63275782 | Msa0694030:intron | 40.0% | |
CCCGTATACAATGTCAAACT+TGG | + | chr4_4:63275786-63275805 | Msa0694030:intron | 40.0% | |
TCCATTCAGGTATGGAATTC+AGG | + | chr4_4:63275934-63275953 | Msa0694030:intron | 40.0% | |
ACCTGAATTCCATACCTGAA+TGG | - | chr4_4:63275938-63275957 | None:intergenic | 40.0% | |
TGAATTCCACAAAGGACGAA+TGG | - | chr4_4:63275970-63275989 | None:intergenic | 40.0% | |
GGCTGATAAATCAACCATTG+TGG | + | chr4_4:63276560-63276579 | Msa0694030:intron | 40.0% | |
CATCTGTAATCAACTCACAG+TGG | + | chr4_4:63276685-63276704 | Msa0694030:CDS | 40.0% | |
GAATGCTTCCCTTGATTCAT+AGG | - | chr4_4:63276715-63276734 | None:intergenic | 40.0% | |
! | GAAGCATTCTTAGCTGATCA+AGG | + | chr4_4:63276726-63276745 | Msa0694030:CDS | 40.0% |
GTTGTACTGAACATATGTGG+TGG | + | chr4_4:63276855-63276874 | Msa0694030:CDS | 40.0% | |
ATTTGTGCAACTAAGAAGCC+TGG | + | chr4_4:63276894-63276913 | Msa0694030:CDS | 40.0% | |
TCTCTTGACCACAATTGCTT+TGG | + | chr4_4:63276917-63276936 | Msa0694030:CDS | 40.0% | |
!! | CAGCTTTAGAAGTTATGACG+CGG | + | chr4_4:63277200-63277219 | Msa0694030:CDS | 40.0% |
CGATTTCTCTTCTTGCTCAC+GGG | - | chr4_4:63275176-63275195 | None:intergenic | 45.0% | |
CCGATTTCTCTTCTTGCTCA+CGG | - | chr4_4:63275177-63275196 | None:intergenic | 45.0% | |
CCGTGAGCAAGAAGAGAAAT+CGG | + | chr4_4:63275174-63275193 | Msa0694030:CDS | 45.0% | |
CGTGAGCAAGAAGAGAAATC+GGG | + | chr4_4:63275175-63275194 | Msa0694030:CDS | 45.0% | |
GTGAGCAAGAAGAGAAATCG+GGG | + | chr4_4:63275176-63275195 | Msa0694030:CDS | 45.0% | |
AGAAGGAAGTTCAGGAAGCA+AGG | - | chr4_4:63275345-63275364 | None:intergenic | 45.0% | |
GCTTCCTGAACTTCCTTCTA+AGG | + | chr4_4:63275346-63275365 | Msa0694030:CDS | 45.0% | |
! | TAGCTAGATGGGGGCTTTTA+AGG | - | chr4_4:63275690-63275709 | None:intergenic | 45.0% |
TTAAAAGCCCCCATCTAGCT+AGG | + | chr4_4:63275689-63275708 | Msa0694030:intron | 45.0% | |
TAAAAGCCCCCATCTAGCTA+GGG | + | chr4_4:63275690-63275709 | Msa0694030:intron | 45.0% | |
TAAGAACCCTAGCTAGATGG+GGG | - | chr4_4:63275699-63275718 | None:intergenic | 45.0% | |
TTTACTTCACGACCGAACTG+AGG | - | chr4_4:63275895-63275914 | None:intergenic | 45.0% | |
TCTGAACCATTCGTCCTTTG+TGG | + | chr4_4:63275961-63275980 | Msa0694030:intron | 45.0% | |
ACAGTATTAGAGCCAACCCA+TGG | + | chr4_4:63276244-63276263 | Msa0694030:intron | 45.0% | |
AAGACTTCAAGTCCATGGGT+TGG | - | chr4_4:63276259-63276278 | None:intergenic | 45.0% | |
ACTCAAATCTGTATCCCCAC+TGG | + | chr4_4:63276653-63276672 | Msa0694030:CDS | 45.0% | |
CTCAAATCTGTATCCCCACT+GGG | + | chr4_4:63276654-63276673 | Msa0694030:CDS | 45.0% | |
TCAAATCTGTATCCCCACTG+GGG | + | chr4_4:63276655-63276674 | Msa0694030:CDS | 45.0% | |
AGTGGCATCCCTATGAATCA+AGG | + | chr4_4:63276703-63276722 | Msa0694030:CDS | 45.0% | |
GTGGCATCCCTATGAATCAA+GGG | + | chr4_4:63276704-63276723 | Msa0694030:CDS | 45.0% | |
TTACCTCCACCACAACATGT+AGG | + | chr4_4:63276807-63276826 | Msa0694030:CDS | 45.0% | |
AAACCTACATGTTGTGGTGG+AGG | - | chr4_4:63276813-63276832 | None:intergenic | 45.0% | |
CAGGCAAAACAAGCTTCACA+TGG | + | chr4_4:63277145-63277164 | Msa0694030:intron | 45.0% | |
CGATTTCTCTTCTTGCTCAC+GGG | - | chr4_4:63275176-63275195 | None:intergenic | 45.0% | |
CCGATTTCTCTTCTTGCTCA+CGG | - | chr4_4:63275177-63275196 | None:intergenic | 45.0% | |
CCGTGAGCAAGAAGAGAAAT+CGG | + | chr4_4:63275174-63275193 | Msa0694030:CDS | 45.0% | |
CGTGAGCAAGAAGAGAAATC+GGG | + | chr4_4:63275175-63275194 | Msa0694030:CDS | 45.0% | |
GTGAGCAAGAAGAGAAATCG+GGG | + | chr4_4:63275176-63275195 | Msa0694030:CDS | 45.0% | |
AGAAGGAAGTTCAGGAAGCA+AGG | - | chr4_4:63275345-63275364 | None:intergenic | 45.0% | |
GCTTCCTGAACTTCCTTCTA+AGG | + | chr4_4:63275346-63275365 | Msa0694030:CDS | 45.0% | |
! | TAGCTAGATGGGGGCTTTTA+AGG | - | chr4_4:63275690-63275709 | None:intergenic | 45.0% |
TTAAAAGCCCCCATCTAGCT+AGG | + | chr4_4:63275689-63275708 | Msa0694030:intron | 45.0% | |
TAAAAGCCCCCATCTAGCTA+GGG | + | chr4_4:63275690-63275709 | Msa0694030:intron | 45.0% | |
TAAGAACCCTAGCTAGATGG+GGG | - | chr4_4:63275699-63275718 | None:intergenic | 45.0% | |
TTTACTTCACGACCGAACTG+AGG | - | chr4_4:63275895-63275914 | None:intergenic | 45.0% | |
TCTGAACCATTCGTCCTTTG+TGG | + | chr4_4:63275961-63275980 | Msa0694030:intron | 45.0% | |
ACAGTATTAGAGCCAACCCA+TGG | + | chr4_4:63276244-63276263 | Msa0694030:intron | 45.0% | |
AAGACTTCAAGTCCATGGGT+TGG | - | chr4_4:63276259-63276278 | None:intergenic | 45.0% | |
ACTCAAATCTGTATCCCCAC+TGG | + | chr4_4:63276653-63276672 | Msa0694030:CDS | 45.0% | |
CTCAAATCTGTATCCCCACT+GGG | + | chr4_4:63276654-63276673 | Msa0694030:CDS | 45.0% | |
TCAAATCTGTATCCCCACTG+GGG | + | chr4_4:63276655-63276674 | Msa0694030:CDS | 45.0% | |
AGTGGCATCCCTATGAATCA+AGG | + | chr4_4:63276703-63276722 | Msa0694030:CDS | 45.0% | |
GTGGCATCCCTATGAATCAA+GGG | + | chr4_4:63276704-63276723 | Msa0694030:CDS | 45.0% | |
TTACCTCCACCACAACATGT+AGG | + | chr4_4:63276807-63276826 | Msa0694030:CDS | 45.0% | |
AAACCTACATGTTGTGGTGG+AGG | - | chr4_4:63276813-63276832 | None:intergenic | 45.0% | |
CAGGCAAAACAAGCTTCACA+TGG | + | chr4_4:63277145-63277164 | Msa0694030:intron | 45.0% | |
GAGTTTGGGAGATCATCCCA+TGG | - | chr4_4:63275071-63275090 | None:intergenic | 50.0% | |
AGCAAGAAGAGAAATCGGGG+TGG | + | chr4_4:63275179-63275198 | Msa0694030:CDS | 50.0% | |
GCAAGAAGAGAAATCGGGGT+GGG | + | chr4_4:63275180-63275199 | Msa0694030:CDS | 50.0% | |
CAAGAAGAGAAATCGGGGTG+GGG | + | chr4_4:63275181-63275200 | Msa0694030:CDS | 50.0% | |
GTTCAGGAAGCAAGGCATGA+AGG | - | chr4_4:63275337-63275356 | None:intergenic | 50.0% | |
CTTCACTGCTGCATCCACAA+TGG | - | chr4_4:63276577-63276596 | None:intergenic | 50.0% | |
GCAATTGTGGTCAAGAGACC+AGG | - | chr4_4:63276915-63276934 | None:intergenic | 50.0% | |
! | GACCACAATTGCTTTGGTGC+TGG | + | chr4_4:63276923-63276942 | Msa0694030:CDS | 50.0% |
CTCCAGCACCAAAGCAATTG+TGG | - | chr4_4:63276928-63276947 | None:intergenic | 50.0% | |
TTCACATGGCGCAAACTCGA+TGG | + | chr4_4:63277159-63277178 | Msa0694030:CDS | 50.0% | |
GAGTTTGGGAGATCATCCCA+TGG | - | chr4_4:63275071-63275090 | None:intergenic | 50.0% | |
AGCAAGAAGAGAAATCGGGG+TGG | + | chr4_4:63275179-63275198 | Msa0694030:CDS | 50.0% | |
GCAAGAAGAGAAATCGGGGT+GGG | + | chr4_4:63275180-63275199 | Msa0694030:CDS | 50.0% | |
CAAGAAGAGAAATCGGGGTG+GGG | + | chr4_4:63275181-63275200 | Msa0694030:CDS | 50.0% | |
GTTCAGGAAGCAAGGCATGA+AGG | - | chr4_4:63275337-63275356 | None:intergenic | 50.0% | |
CTTCACTGCTGCATCCACAA+TGG | - | chr4_4:63276577-63276596 | None:intergenic | 50.0% | |
GCAATTGTGGTCAAGAGACC+AGG | - | chr4_4:63276915-63276934 | None:intergenic | 50.0% | |
! | GACCACAATTGCTTTGGTGC+TGG | + | chr4_4:63276923-63276942 | Msa0694030:CDS | 50.0% |
CTCCAGCACCAAAGCAATTG+TGG | - | chr4_4:63276928-63276947 | None:intergenic | 50.0% | |
TTCACATGGCGCAAACTCGA+TGG | + | chr4_4:63277159-63277178 | Msa0694030:CDS | 50.0% | |
ACGGGCCAGATCCCTATCTA+TGG | - | chr4_4:63275771-63275790 | None:intergenic | 55.0% | |
AGATGACTCACTCCCCAGTG+GGG | - | chr4_4:63276670-63276689 | None:intergenic | 55.0% | |
CAGATGACTCACTCCCCAGT+GGG | - | chr4_4:63276671-63276690 | None:intergenic | 55.0% | |
ACAGATGACTCACTCCCCAG+TGG | - | chr4_4:63276672-63276691 | None:intergenic | 55.0% | |
ACATGGCGCAAACTCGATGG+AGG | + | chr4_4:63277162-63277181 | Msa0694030:CDS | 55.0% | |
ACGGGCCAGATCCCTATCTA+TGG | - | chr4_4:63275771-63275790 | None:intergenic | 55.0% | |
AGATGACTCACTCCCCAGTG+GGG | - | chr4_4:63276670-63276689 | None:intergenic | 55.0% | |
CAGATGACTCACTCCCCAGT+GGG | - | chr4_4:63276671-63276690 | None:intergenic | 55.0% | |
ACAGATGACTCACTCCCCAG+TGG | - | chr4_4:63276672-63276691 | None:intergenic | 55.0% | |
ACATGGCGCAAACTCGATGG+AGG | + | chr4_4:63277162-63277181 | Msa0694030:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_4 | gene | 63275008 | 63277231 | 63275008 | ID=Msa0694030;Name=Msa0694030 |
chr4_4 | mRNA | 63275008 | 63277231 | 63275008 | ID=Msa0694030-mRNA-1;Parent=Msa0694030;Name=Msa0694030-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|301 |
chr4_4 | exon | 63275008 | 63275367 | 63275008 | ID=Msa0694030-mRNA-1:exon:17723;Parent=Msa0694030-mRNA-1 |
chr4_4 | exon | 63276561 | 63277022 | 63276561 | ID=Msa0694030-mRNA-1:exon:17724;Parent=Msa0694030-mRNA-1 |
chr4_4 | exon | 63277148 | 63277231 | 63277148 | ID=Msa0694030-mRNA-1:exon:17725;Parent=Msa0694030-mRNA-1 |
chr4_4 | CDS | 63275008 | 63275367 | 63275008 | ID=Msa0694030-mRNA-1:cds;Parent=Msa0694030-mRNA-1 |
chr4_4 | CDS | 63276561 | 63277022 | 63276561 | ID=Msa0694030-mRNA-1:cds;Parent=Msa0694030-mRNA-1 |
chr4_4 | CDS | 63277148 | 63277231 | 63277148 | ID=Msa0694030-mRNA-1:cds;Parent=Msa0694030-mRNA-1 |
Gene Sequence |
Protein sequence |