AlfalfaGEDB | Msa0694030

M. sativa cultivar zhongmu-4 / Msa0694030

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0694030	XP_003607938.1	91.803	305	21	2	1	301	1	305	0.0	523

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0694030	sp\|Q9FXA3\|BH095_ARATH	43.519	216	84	5	88	275	70	275	9.12e-41	146

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0694030	G7JK25	91.803	305	21	2	1	301	1	305	0.0	523

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TFs/TRs:

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Gene ID	Type	Classification
Msa0694030	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0694030	MtrunA17_Chr4g0044621	91.803	305	21	2	1	301	1	305	0.0	523
Msa0694030	MtrunA17_Chr4g0044611	89.247	279	25	3	1	275	1	278	6.37e-165	460
Msa0694030	MtrunA17_Chr4g0042511	43.841	276	121	6	1	275	1	243	1.12e-50	168

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0694030	AT1G49770.1	43.519	216	84	5	88	275	70	275	9.27e-42	146

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Find 62 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATTGAACCAGAAAGA+AGG	0.568529	4_4:+63275131	Msa0694030:CDS
AAACCTACATGTTGTGGTGG+AGG	0.530627	4_4:-63276810	None:intergenic
AAATGAATTTATACCTTAGA+AGG	0.315805	4_4:-63275359	None:intergenic
AACATTATGTGCAATGCAAA+TGG	0.441341	4_4:+63276975	Msa0694030:CDS
AATGCTTCCCTTGATTCATA+GGG	0.521692	4_4:-63276711	None:intergenic
AATGTTGTACTGAACATATG+TGG	0.655921	4_4:+63276852	Msa0694030:CDS
ACAGATGACTCACTCCCCAG+TGG	0.704607	4_4:-63276669	None:intergenic
ACATATTGACTGAAAGAGAA+AGG	0.558067	4_4:+63275282	Msa0694030:CDS
ACATGGCGCAAACTCGATGG+AGG	0.652836	4_4:+63277162	Msa0694030:CDS
ACTCAAATCTGTATCCCCAC+TGG	0.549600	4_4:+63276653	Msa0694030:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCTAAGTTATGATTAGAGTT+TGG	-	chr4_4:63275086-63275105	None:intergenic	30.0%
CCAAACTCTAATCATAACTT+AGG	+	chr4_4:63275083-63275102	Msa0694030:CDS	30.0%
AGTGAGAATAATATTGCAAC+TGG	+	chr4_4:63275215-63275234	Msa0694030:CDS	30.0%
AAACAACACTCATATAAGCT+AGG	+	chr4_4:63275625-63275644	Msa0694030:intron	30.0%
AACAACACTCATATAAGCTA+GGG	+	chr4_4:63275626-63275645	Msa0694030:intron	30.0%
TCCAAGTTTGACATTGTATA+CGG	-	chr4_4:63275790-63275809	None:intergenic	30.0%
ACCACTTAAGTTCAATTGTT+TGG	+	chr4_4:63275993-63276012	Msa0694030:intron	30.0%
ACCAAACAATTGAACTTAAG+TGG	-	chr4_4:63275997-63276016	None:intergenic	30.0%
TAGTTAAAGAGATTAGAGAG+TGG	+	chr4_4:63276121-63276140	Msa0694030:intron	30.0%
AATAAAGACTTCAAGTCCAT+GGG	-	chr4_4:63276263-63276282	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	63275008	63277231	63275008	ID=Msa0694030;Name=Msa0694030
chr4_4	mRNA	63275008	63277231	63275008	ID=Msa0694030-mRNA-1;Parent=Msa0694030;Name=Msa0694030-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|3\|0\|301
chr4_4	exon	63275008	63275367	63275008	ID=Msa0694030-mRNA-1:exon:17723;Parent=Msa0694030-mRNA-1
chr4_4	exon	63276561	63277022	63276561	ID=Msa0694030-mRNA-1:exon:17724;Parent=Msa0694030-mRNA-1
chr4_4	exon	63277148	63277231	63277148	ID=Msa0694030-mRNA-1:exon:17725;Parent=Msa0694030-mRNA-1
chr4_4	CDS	63275008	63275367	63275008	ID=Msa0694030-mRNA-1:cds;Parent=Msa0694030-mRNA-1
chr4_4	CDS	63276561	63277022	63276561	ID=Msa0694030-mRNA-1:cds;Parent=Msa0694030-mRNA-1
chr4_4	CDS	63277148	63277231	63277148	ID=Msa0694030-mRNA-1:cds;Parent=Msa0694030-mRNA-1

Gene Sequence

>Msa0694030

ATGGCCATGAGTGTAGATCATGATCAAGATGTTCAAACAAATTTCATTTGGGAAAATCATCCATGGGATGATCTCCCAAACTCTAATCATAACTTAGGTGAGAGTAGCAAACAATTGGACACAAAACCATTGAACCAGAAAGAAGGAATCAATGAAGGAGAAGCTCCCGTGAGCAAGAAGAGAAATCGGGGTGGGGTTGTAATTAGAAGTGAGAATAATATTGCAACTGGTGAAGAAAAAGATAAAAAGTATCGTGATTTTGATCATGAAATGCACATATTGACTGAAAGAGAAAGGAGAAAGAAAATGAGGAACATGTTCGATAGCCTTCATGCCTTGCTTCCTGAACTTCCTTCTAAGGCTGATAAATCAACCATTGTGGATGCAGCAGTGAAGCACATTAAAAATCTTGAAGAAATTAAGGAAAAGCTAGAAAAGAAGAAGCAAGAAAGACTCAAATCTGTATCCCCACTGGGGAGTGAGTCATCTGTAATCAACTCACAGTGGCATCCCTATGAATCAAGGGAAGCATTCTTAGCTGATCAAGGATCCTCAAGTTATAATAATAACTTGTCTAGCGCAATTGTAACTTCAAATGCATTTTCATTACCTCCACCACAACATGTAGGTTTTAAAACATGGTCTTCTCAAAATGTTGTACTGAACATATGTGGTGGTGAAGCACAATTTTGCATTTGTGCAACTAAGAAGCCTGGTCTCTTGACCACAATTGCTTTGGTGCTGGAGAAACATAAGATTGATGTTATTTCTGCCAACATTATGTGCAATGCAAATGGAAACTTCTACATGATTATGGCCCATGCAAAACAAGCTTCACATGGCGCAAACTCGATGGAGGAAACTTACAAGCAAGCAGCTTTAGAAGTTATGACGCGGATCGCTTAA

Protein sequence

>Msa0694030

MAMSVDHDQDVQTNFIWENHPWDDLPNSNHNLGESSKQLDTKPLNQKEGINEGEAPVSKKRNRGGVVIRSENNIATGEEKDKKYRDFDHEMHILTERERRKKMRNMFDSLHALLPELPSKADKSTIVDAAVKHIKNLEEIKEKLEKKKQERLKSVSPLGSESSVINSQWHPYESREAFLADQGSSSYNNNLSSAIVTSNAFSLPPPQHVGFKTWSSQNVVLNICGGEAQFCICATKKPGLLTTIALVLEKHKIDVISANIMCNANGNFYMIMAHAKQASHGANSMEETYKQAALEVMTRIA*