AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0694030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0694030 MtrunA17_Chr4g0044621 91.803 305 21 2 1 301 1 305 0.0 523
Msa0694030 MtrunA17_Chr4g0044611 89.247 279 25 3 1 275 1 278 6.37e-165 460
Msa0694030 MtrunA17_Chr4g0042511 43.841 276 121 6 1 275 1 243 1.12e-50 168
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0694030 AT1G49770.1 43.519 216 84 5 88 275 70 275 9.27e-42 146

Find 62 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCATTGATTCCTTCTTTC+TGG 0.014189 4_4:-63275142 None:intergenic
GCTTCCTGAACTTCCTTCTA+AGG 0.247562 4_4:+63275346 Msa0694030:CDS
CCTAAGTTATGATTAGAGTT+TGG 0.258500 4_4:-63275083 None:intergenic
GAATGCTTCCCTTGATTCAT+AGG 0.298456 4_4:-63276712 None:intergenic
TGGAAACTTCTACATGATTA+TGG 0.312756 4_4:+63276995 Msa0694030:CDS
CTAAGTTATGATTAGAGTTT+GGG 0.313394 4_4:-63275082 None:intergenic
AAATGAATTTATACCTTAGA+AGG 0.315805 4_4:-63275359 None:intergenic
ATTCCTTCTTTCTGGTTCAA+TGG 0.328467 4_4:-63275134 None:intergenic
ATGTTCAAACAAATTTCATT+TGG 0.345668 4_4:+63275036 Msa0694030:CDS
TGTTCAAACAAATTTCATTT+GGG 0.373120 4_4:+63275037 Msa0694030:CDS
TATACCTTAGAAGGAAGTTC+AGG 0.398193 4_4:-63275350 None:intergenic
TCTCTTGACCACAATTGCTT+TGG 0.400979 4_4:+63276917 Msa0694030:CDS
GACCACAATTGCTTTGGTGC+TGG 0.421423 4_4:+63276923 Msa0694030:CDS
CCGATTTCTCTTCTTGCTCA+CGG 0.425778 4_4:-63275174 None:intergenic
CCGTGAGCAAGAAGAGAAAT+CGG 0.430632 4_4:+63275174 Msa0694030:CDS
CGATTTCTCTTCTTGCTCAC+GGG 0.436559 4_4:-63275173 None:intergenic
AACATTATGTGCAATGCAAA+TGG 0.441341 4_4:+63276975 Msa0694030:CDS
AGTGAGAATAATATTGCAAC+TGG 0.447083 4_4:+63275215 Msa0694030:CDS
GAGAAAGGAGAAAGAAAATG+AGG 0.462906 4_4:+63275297 Msa0694030:CDS
CGTGAGCAAGAAGAGAAATC+GGG 0.482173 4_4:+63275175 Msa0694030:CDS
AGGTGAGAGTAGCAAACAAT+TGG 0.494891 4_4:+63275103 Msa0694030:CDS
CTCCAGCACCAAAGCAATTG+TGG 0.505022 4_4:-63276925 None:intergenic
ATTTGCATTGCACATAATGT+TGG 0.516349 4_4:-63276973 None:intergenic
CCAAACTCTAATCATAACTT+AGG 0.519326 4_4:+63275083 Msa0694030:CDS
AATGCTTCCCTTGATTCATA+GGG 0.521692 4_4:-63276711 None:intergenic
TCATTTGGGAAAATCATCCA+TGG 0.525272 4_4:+63275051 Msa0694030:CDS
CAGAAAGAAGGAATCAATGA+AGG 0.527899 4_4:+63275143 Msa0694030:CDS
CTCAAATCTGTATCCCCACT+GGG 0.528728 4_4:+63276654 Msa0694030:CDS
AAACCTACATGTTGTGGTGG+AGG 0.530627 4_4:-63276810 None:intergenic
AGTGGCATCCCTATGAATCA+AGG 0.535671 4_4:+63276703 Msa0694030:CDS
CATTTGGGAAAATCATCCAT+GGG 0.537456 4_4:+63275052 Msa0694030:CDS
ATTTGTGCAACTAAGAAGCC+TGG 0.543272 4_4:+63276894 Msa0694030:CDS
CAGGCAAAACAAGCTTCACA+TGG 0.544546 4_4:+63277145 Msa0694030:intron
ACTCAAATCTGTATCCCCAC+TGG 0.549600 4_4:+63276653 Msa0694030:CDS
CAAGAAGAGAAATCGGGGTG+GGG 0.550377 4_4:+63275181 Msa0694030:CDS
GAAGCATTCTTAGCTGATCA+AGG 0.551542 4_4:+63276726 Msa0694030:CDS
GTTCAGGAAGCAAGGCATGA+AGG 0.554482 4_4:-63275334 None:intergenic
AGAAGGAAGTTCAGGAAGCA+AGG 0.555351 4_4:-63275342 None:intergenic
ACATATTGACTGAAAGAGAA+AGG 0.558067 4_4:+63275282 Msa0694030:CDS
AAACCATTGAACCAGAAAGA+AGG 0.568529 4_4:+63275131 Msa0694030:CDS
GCAATTGTGGTCAAGAGACC+AGG 0.573021 4_4:-63276912 None:intergenic
GCAAGAAGAGAAATCGGGGT+GGG 0.581863 4_4:+63275180 Msa0694030:CDS
CAAGTTATTATTATAACTTG+AGG 0.582073 4_4:-63276751 None:intergenic
TTGATCATGATCTACACTCA+TGG 0.585566 4_4:-63275012 None:intergenic
TTCACATGGCGCAAACTCGA+TGG 0.594689 4_4:+63277159 Msa0694030:CDS
CAGATGACTCACTCCCCAGT+GGG 0.602188 4_4:-63276668 None:intergenic
TTACCTCCACCACAACATGT+AGG 0.611747 4_4:+63276807 Msa0694030:CDS
CTTCACTGCTGCATCCACAA+TGG 0.612064 4_4:-63276574 None:intergenic
GTGGCATCCCTATGAATCAA+GGG 0.614055 4_4:+63276704 Msa0694030:CDS
GGCTGATAAATCAACCATTG+TGG 0.629857 4_4:+63276560 Msa0694030:intron
ACATGGCGCAAACTCGATGG+AGG 0.652836 4_4:+63277162 Msa0694030:CDS
TTAAAACCTACATGTTGTGG+TGG 0.654855 4_4:-63276813 None:intergenic
AATGTTGTACTGAACATATG+TGG 0.655921 4_4:+63276852 Msa0694030:CDS
CAGCTTTAGAAGTTATGACG+CGG 0.659283 4_4:+63277200 Msa0694030:CDS
GAGTTTGGGAGATCATCCCA+TGG 0.666665 4_4:-63275068 None:intergenic
GTGAGCAAGAAGAGAAATCG+GGG 0.694598 4_4:+63275176 Msa0694030:CDS
ACAGATGACTCACTCCCCAG+TGG 0.704607 4_4:-63276669 None:intergenic
AGCAAGAAGAGAAATCGGGG+TGG 0.706863 4_4:+63275179 Msa0694030:CDS
AGATGACTCACTCCCCAGTG+GGG 0.742486 4_4:-63276667 None:intergenic
CATCTGTAATCAACTCACAG+TGG 0.763842 4_4:+63276685 Msa0694030:CDS
TCAAATCTGTATCCCCACTG+GGG 0.765141 4_4:+63276655 Msa0694030:CDS
GTTGTACTGAACATATGTGG+TGG 0.767818 4_4:+63276855 Msa0694030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGATTTTGATAAACTTTAA+GGG - chr4_4:63275465-63275484 None:intergenic 15.0%
!!! TATGATTTTGATAAACTTTA+AGG - chr4_4:63275466-63275485 None:intergenic 15.0%
!! ATTAATTAGTTCAATAATCA+AGG - chr4_4:63275844-63275863 None:intergenic 15.0%
!!! TTGATAGTATTCATTTATTT+AGG + chr4_4:63276217-63276236 Msa0694030:intron 15.0%
!! TGATAGTATTCATTTATTTA+GGG + chr4_4:63276218-63276237 Msa0694030:intron 15.0%
!!! ACTGAAATAAATAATTTTCT+TGG + chr4_4:63276423-63276442 Msa0694030:intron 15.0%
!!! ATTTGATTTTGATATTTTAC+AGG + chr4_4:63276539-63276558 Msa0694030:intron 15.0%
!! TAAAAATCTTGAAGAAATTA+AGG + chr4_4:63276602-63276621 Msa0694030:CDS 15.0%
!! GATATTAAAAAATGATAAAG+AGG - chr4_4:63277046-63277065 None:intergenic 15.0%
!!! ATGATTTTGATAAACTTTAA+GGG - chr4_4:63275465-63275484 None:intergenic 15.0%
!!! TATGATTTTGATAAACTTTA+AGG - chr4_4:63275466-63275485 None:intergenic 15.0%
!! ATTAATTAGTTCAATAATCA+AGG - chr4_4:63275844-63275863 None:intergenic 15.0%
!!! TTGATAGTATTCATTTATTT+AGG + chr4_4:63276217-63276236 Msa0694030:intron 15.0%
!! TGATAGTATTCATTTATTTA+GGG + chr4_4:63276218-63276237 Msa0694030:intron 15.0%
!!! ACTGAAATAAATAATTTTCT+TGG + chr4_4:63276423-63276442 Msa0694030:intron 15.0%
!!! ATTTGATTTTGATATTTTAC+AGG + chr4_4:63276539-63276558 Msa0694030:intron 15.0%
!! TAAAAATCTTGAAGAAATTA+AGG + chr4_4:63276602-63276621 Msa0694030:CDS 15.0%
!! GATATTAAAAAATGATAAAG+AGG - chr4_4:63277046-63277065 None:intergenic 15.0%
!! ATGTTCAAACAAATTTCATT+TGG + chr4_4:63275036-63275055 Msa0694030:CDS 20.0%
!! TGTTCAAACAAATTTCATTT+GGG + chr4_4:63275037-63275056 Msa0694030:CDS 20.0%
!! AAATGAATTTATACCTTAGA+AGG - chr4_4:63275362-63275381 None:intergenic 20.0%
!!! TGATTTTGATAAACTTTAAG+GGG - chr4_4:63275464-63275483 None:intergenic 20.0%
!! GCAAATACAAAAATGTATTT+AGG + chr4_4:63275527-63275546 Msa0694030:intron 20.0%
!!! GAAATAAATAATTTTCTTGG+AGG + chr4_4:63276426-63276445 Msa0694030:intron 20.0%
!! CTACAATTACTTATTTACTA+AGG + chr4_4:63276506-63276525 Msa0694030:intron 20.0%
!! CAAGTTATTATTATAACTTG+AGG - chr4_4:63276754-63276773 None:intergenic 20.0%
!! ATGTTCAAACAAATTTCATT+TGG + chr4_4:63275036-63275055 Msa0694030:CDS 20.0%
!! TGTTCAAACAAATTTCATTT+GGG + chr4_4:63275037-63275056 Msa0694030:CDS 20.0%
!! AAATGAATTTATACCTTAGA+AGG - chr4_4:63275362-63275381 None:intergenic 20.0%
!!! TGATTTTGATAAACTTTAAG+GGG - chr4_4:63275464-63275483 None:intergenic 20.0%
!! GCAAATACAAAAATGTATTT+AGG + chr4_4:63275527-63275546 Msa0694030:intron 20.0%
!!! GAAATAAATAATTTTCTTGG+AGG + chr4_4:63276426-63276445 Msa0694030:intron 20.0%
!! CTACAATTACTTATTTACTA+AGG + chr4_4:63276506-63276525 Msa0694030:intron 20.0%
!! CAAGTTATTATTATAACTTG+AGG - chr4_4:63276754-63276773 None:intergenic 20.0%
! CTAAGTTATGATTAGAGTTT+GGG - chr4_4:63275085-63275104 None:intergenic 25.0%
!! TTTCTATATCTTTTCCGATT+TGG + chr4_4:63275505-63275524 Msa0694030:intron 25.0%
!! CATTTTTGTATTTGCCAAAT+CGG - chr4_4:63275522-63275541 None:intergenic 25.0%
! TCATATTGTAACTCAATTGT+TGG - chr4_4:63276054-63276073 None:intergenic 25.0%
! CAATTGTCAGTTAAATCTTA+CGG + chr4_4:63276090-63276109 Msa0694030:intron 25.0%
! GTGGACACAATAAAAAAAAA+TGG + chr4_4:63276140-63276159 Msa0694030:intron 25.0%
!!! CTTTTCAAGTGAGAATATAA+TGG - chr4_4:63276166-63276185 None:intergenic 25.0%
!!! CCATTGACTTAAATTTTCTT+AGG - chr4_4:63276370-63276389 None:intergenic 25.0%
! CCTAAGAAAATTTAAGTCAA+TGG + chr4_4:63276367-63276386 Msa0694030:intron 25.0%
! AAAATTTAAGTCAATGGCAT+TGG + chr4_4:63276373-63276392 Msa0694030:intron 25.0%
!!! AACATGTAGGTTTTAAAACA+TGG + chr4_4:63276820-63276839 Msa0694030:CDS 25.0%
! CTAAGTTATGATTAGAGTTT+GGG - chr4_4:63275085-63275104 None:intergenic 25.0%
!! TTTCTATATCTTTTCCGATT+TGG + chr4_4:63275505-63275524 Msa0694030:intron 25.0%
!! CATTTTTGTATTTGCCAAAT+CGG - chr4_4:63275522-63275541 None:intergenic 25.0%
! TCATATTGTAACTCAATTGT+TGG - chr4_4:63276054-63276073 None:intergenic 25.0%
! CAATTGTCAGTTAAATCTTA+CGG + chr4_4:63276090-63276109 Msa0694030:intron 25.0%
! GTGGACACAATAAAAAAAAA+TGG + chr4_4:63276140-63276159 Msa0694030:intron 25.0%
!!! CTTTTCAAGTGAGAATATAA+TGG - chr4_4:63276166-63276185 None:intergenic 25.0%
!!! CCATTGACTTAAATTTTCTT+AGG - chr4_4:63276370-63276389 None:intergenic 25.0%
! CCTAAGAAAATTTAAGTCAA+TGG + chr4_4:63276367-63276386 Msa0694030:intron 25.0%
! AAAATTTAAGTCAATGGCAT+TGG + chr4_4:63276373-63276392 Msa0694030:intron 25.0%
!!! AACATGTAGGTTTTAAAACA+TGG + chr4_4:63276820-63276839 Msa0694030:CDS 25.0%
CCTAAGTTATGATTAGAGTT+TGG - chr4_4:63275086-63275105 None:intergenic 30.0%
CCAAACTCTAATCATAACTT+AGG + chr4_4:63275083-63275102 Msa0694030:CDS 30.0%
AGTGAGAATAATATTGCAAC+TGG + chr4_4:63275215-63275234 Msa0694030:CDS 30.0%
! ACATATTGACTGAAAGAGAA+AGG + chr4_4:63275282-63275301 Msa0694030:CDS 30.0%
! GATAAACTTTAAGGGGAAAA+AGG - chr4_4:63275457-63275476 None:intergenic 30.0%
!!! TTTTTTTAGCCTGATCAAGA+AGG - chr4_4:63275598-63275617 None:intergenic 30.0%
AAACAACACTCATATAAGCT+AGG + chr4_4:63275625-63275644 Msa0694030:intron 30.0%
AACAACACTCATATAAGCTA+GGG + chr4_4:63275626-63275645 Msa0694030:intron 30.0%
TCCAAGTTTGACATTGTATA+CGG - chr4_4:63275790-63275809 None:intergenic 30.0%
ACCACTTAAGTTCAATTGTT+TGG + chr4_4:63275993-63276012 Msa0694030:intron 30.0%
ACCAAACAATTGAACTTAAG+TGG - chr4_4:63275997-63276016 None:intergenic 30.0%
TAGTTAAAGAGATTAGAGAG+TGG + chr4_4:63276121-63276140 Msa0694030:intron 30.0%
AATAAAGACTTCAAGTCCAT+GGG - chr4_4:63276263-63276282 None:intergenic 30.0%
AAATAAAGACTTCAAGTCCA+TGG - chr4_4:63276264-63276283 None:intergenic 30.0%
!!! GTTTTAAAACCTACATGTTG+TGG - chr4_4:63276819-63276838 None:intergenic 30.0%
AATGTTGTACTGAACATATG+TGG + chr4_4:63276852-63276871 Msa0694030:CDS 30.0%
ATTTGCATTGCACATAATGT+TGG - chr4_4:63276976-63276995 None:intergenic 30.0%
AACATTATGTGCAATGCAAA+TGG + chr4_4:63276975-63276994 Msa0694030:CDS 30.0%
TGGAAACTTCTACATGATTA+TGG + chr4_4:63276995-63277014 Msa0694030:CDS 30.0%
! AGAAGGTTTGAAACTTACAT+GGG - chr4_4:63277021-63277040 None:intergenic 30.0%
AAAATGATAAAGAGGAGAGA+AGG - chr4_4:63277038-63277057 None:intergenic 30.0%
!!! TTGAATTGTGTTGATTTTGC+AGG + chr4_4:63277126-63277145 Msa0694030:intron 30.0%
CCTAAGTTATGATTAGAGTT+TGG - chr4_4:63275086-63275105 None:intergenic 30.0%
CCAAACTCTAATCATAACTT+AGG + chr4_4:63275083-63275102 Msa0694030:CDS 30.0%
AGTGAGAATAATATTGCAAC+TGG + chr4_4:63275215-63275234 Msa0694030:CDS 30.0%
! ACATATTGACTGAAAGAGAA+AGG + chr4_4:63275282-63275301 Msa0694030:CDS 30.0%
! GATAAACTTTAAGGGGAAAA+AGG - chr4_4:63275457-63275476 None:intergenic 30.0%
!!! TTTTTTTAGCCTGATCAAGA+AGG - chr4_4:63275598-63275617 None:intergenic 30.0%
AAACAACACTCATATAAGCT+AGG + chr4_4:63275625-63275644 Msa0694030:intron 30.0%
AACAACACTCATATAAGCTA+GGG + chr4_4:63275626-63275645 Msa0694030:intron 30.0%
TCCAAGTTTGACATTGTATA+CGG - chr4_4:63275790-63275809 None:intergenic 30.0%
ACCACTTAAGTTCAATTGTT+TGG + chr4_4:63275993-63276012 Msa0694030:intron 30.0%
ACCAAACAATTGAACTTAAG+TGG - chr4_4:63275997-63276016 None:intergenic 30.0%
TAGTTAAAGAGATTAGAGAG+TGG + chr4_4:63276121-63276140 Msa0694030:intron 30.0%
AATAAAGACTTCAAGTCCAT+GGG - chr4_4:63276263-63276282 None:intergenic 30.0%
AAATAAAGACTTCAAGTCCA+TGG - chr4_4:63276264-63276283 None:intergenic 30.0%
!!! GTTTTAAAACCTACATGTTG+TGG - chr4_4:63276819-63276838 None:intergenic 30.0%
AATGTTGTACTGAACATATG+TGG + chr4_4:63276852-63276871 Msa0694030:CDS 30.0%
ATTTGCATTGCACATAATGT+TGG - chr4_4:63276976-63276995 None:intergenic 30.0%
AACATTATGTGCAATGCAAA+TGG + chr4_4:63276975-63276994 Msa0694030:CDS 30.0%
TGGAAACTTCTACATGATTA+TGG + chr4_4:63276995-63277014 Msa0694030:CDS 30.0%
! AGAAGGTTTGAAACTTACAT+GGG - chr4_4:63277021-63277040 None:intergenic 30.0%
AAAATGATAAAGAGGAGAGA+AGG - chr4_4:63277038-63277057 None:intergenic 30.0%
!!! TTGAATTGTGTTGATTTTGC+AGG + chr4_4:63277126-63277145 Msa0694030:intron 30.0%
TTGATCATGATCTACACTCA+TGG - chr4_4:63275015-63275034 None:intergenic 35.0%
TCATTTGGGAAAATCATCCA+TGG + chr4_4:63275051-63275070 Msa0694030:CDS 35.0%
CATTTGGGAAAATCATCCAT+GGG + chr4_4:63275052-63275071 Msa0694030:CDS 35.0%
AAACCATTGAACCAGAAAGA+AGG + chr4_4:63275131-63275150 Msa0694030:CDS 35.0%
!! ATTCCTTCTTTCTGGTTCAA+TGG - chr4_4:63275137-63275156 None:intergenic 35.0%
!! CTTCATTGATTCCTTCTTTC+TGG - chr4_4:63275145-63275164 None:intergenic 35.0%
CAGAAAGAAGGAATCAATGA+AGG + chr4_4:63275143-63275162 Msa0694030:CDS 35.0%
GAGAAAGGAGAAAGAAAATG+AGG + chr4_4:63275297-63275316 Msa0694030:CDS 35.0%
TATACCTTAGAAGGAAGTTC+AGG - chr4_4:63275353-63275372 None:intergenic 35.0%
TTTAAGAACCCTAGCTAGAT+GGG - chr4_4:63275701-63275720 None:intergenic 35.0%
ATCTAGCTAGGGTTCTTAAA+GGG + chr4_4:63275701-63275720 Msa0694030:intron 35.0%
TCCTTCTTGTTACCATAGAT+AGG + chr4_4:63275756-63275775 Msa0694030:intron 35.0%
CCTTCTTGTTACCATAGATA+GGG + chr4_4:63275757-63275776 Msa0694030:intron 35.0%
CCAAGTTTGACATTGTATAC+GGG - chr4_4:63275789-63275808 None:intergenic 35.0%
! TTTTTGTGTCAACCTCAGTT+CGG + chr4_4:63275880-63275899 Msa0694030:intron 35.0%
TACCAAAAATCGATCCATTC+AGG + chr4_4:63275921-63275940 Msa0694030:intron 35.0%
!! TACCTGAATGGATCGATTTT+TGG - chr4_4:63275926-63275945 None:intergenic 35.0%
AAAATCGATCCATTCAGGTA+TGG + chr4_4:63275926-63275945 Msa0694030:intron 35.0%
GTGGTTAATGAATTCCACAA+AGG - chr4_4:63275978-63275997 None:intergenic 35.0%
TCAGTTAAATCTTACGGTTG+AGG + chr4_4:63276096-63276115 Msa0694030:intron 35.0%
! ATTTAAGTCAATGGCATTGG+TGG + chr4_4:63276376-63276395 Msa0694030:intron 35.0%
AATGCTTCCCTTGATTCATA+GGG - chr4_4:63276714-63276733 None:intergenic 35.0%
TTAAAACCTACATGTTGTGG+TGG - chr4_4:63276816-63276835 None:intergenic 35.0%
! GAGAAGGTTTGAAACTTACA+TGG - chr4_4:63277022-63277041 None:intergenic 35.0%
TTGATCATGATCTACACTCA+TGG - chr4_4:63275015-63275034 None:intergenic 35.0%
TCATTTGGGAAAATCATCCA+TGG + chr4_4:63275051-63275070 Msa0694030:CDS 35.0%
CATTTGGGAAAATCATCCAT+GGG + chr4_4:63275052-63275071 Msa0694030:CDS 35.0%
AAACCATTGAACCAGAAAGA+AGG + chr4_4:63275131-63275150 Msa0694030:CDS 35.0%
!! ATTCCTTCTTTCTGGTTCAA+TGG - chr4_4:63275137-63275156 None:intergenic 35.0%
!! CTTCATTGATTCCTTCTTTC+TGG - chr4_4:63275145-63275164 None:intergenic 35.0%
CAGAAAGAAGGAATCAATGA+AGG + chr4_4:63275143-63275162 Msa0694030:CDS 35.0%
GAGAAAGGAGAAAGAAAATG+AGG + chr4_4:63275297-63275316 Msa0694030:CDS 35.0%
TATACCTTAGAAGGAAGTTC+AGG - chr4_4:63275353-63275372 None:intergenic 35.0%
TTTAAGAACCCTAGCTAGAT+GGG - chr4_4:63275701-63275720 None:intergenic 35.0%
ATCTAGCTAGGGTTCTTAAA+GGG + chr4_4:63275701-63275720 Msa0694030:intron 35.0%
TCCTTCTTGTTACCATAGAT+AGG + chr4_4:63275756-63275775 Msa0694030:intron 35.0%
CCTTCTTGTTACCATAGATA+GGG + chr4_4:63275757-63275776 Msa0694030:intron 35.0%
CCAAGTTTGACATTGTATAC+GGG - chr4_4:63275789-63275808 None:intergenic 35.0%
! TTTTTGTGTCAACCTCAGTT+CGG + chr4_4:63275880-63275899 Msa0694030:intron 35.0%
TACCAAAAATCGATCCATTC+AGG + chr4_4:63275921-63275940 Msa0694030:intron 35.0%
!! TACCTGAATGGATCGATTTT+TGG - chr4_4:63275926-63275945 None:intergenic 35.0%
AAAATCGATCCATTCAGGTA+TGG + chr4_4:63275926-63275945 Msa0694030:intron 35.0%
GTGGTTAATGAATTCCACAA+AGG - chr4_4:63275978-63275997 None:intergenic 35.0%
TCAGTTAAATCTTACGGTTG+AGG + chr4_4:63276096-63276115 Msa0694030:intron 35.0%
! ATTTAAGTCAATGGCATTGG+TGG + chr4_4:63276376-63276395 Msa0694030:intron 35.0%
AATGCTTCCCTTGATTCATA+GGG - chr4_4:63276714-63276733 None:intergenic 35.0%
TTAAAACCTACATGTTGTGG+TGG - chr4_4:63276816-63276835 None:intergenic 35.0%
! GAGAAGGTTTGAAACTTACA+TGG - chr4_4:63277022-63277041 None:intergenic 35.0%
AGGTGAGAGTAGCAAACAAT+TGG + chr4_4:63275103-63275122 Msa0694030:CDS 40.0%
GAACTTTCTCCTTCTTGATC+AGG + chr4_4:63275586-63275605 Msa0694030:intron 40.0%
TTAAGAACCCTAGCTAGATG+GGG - chr4_4:63275700-63275719 None:intergenic 40.0%
! CTTTAAGAACCCTAGCTAGA+TGG - chr4_4:63275702-63275721 None:intergenic 40.0%
CATCTAGCTAGGGTTCTTAA+AGG + chr4_4:63275700-63275719 Msa0694030:intron 40.0%
TCTAGCTAGGGTTCTTAAAG+GGG + chr4_4:63275702-63275721 Msa0694030:intron 40.0%
AAAGGGGCAATAGATCTACT+AGG + chr4_4:63275718-63275737 Msa0694030:intron 40.0%
AAGGGGCAATAGATCTACTA+GGG + chr4_4:63275719-63275738 Msa0694030:intron 40.0%
CCCTATCTATGGTAACAAGA+AGG - chr4_4:63275760-63275779 None:intergenic 40.0%
TGTTACCATAGATAGGGATC+TGG + chr4_4:63275763-63275782 Msa0694030:intron 40.0%
CCCGTATACAATGTCAAACT+TGG + chr4_4:63275786-63275805 Msa0694030:intron 40.0%
TCCATTCAGGTATGGAATTC+AGG + chr4_4:63275934-63275953 Msa0694030:intron 40.0%
ACCTGAATTCCATACCTGAA+TGG - chr4_4:63275938-63275957 None:intergenic 40.0%
TGAATTCCACAAAGGACGAA+TGG - chr4_4:63275970-63275989 None:intergenic 40.0%
GGCTGATAAATCAACCATTG+TGG + chr4_4:63276560-63276579 Msa0694030:intron 40.0%
CATCTGTAATCAACTCACAG+TGG + chr4_4:63276685-63276704 Msa0694030:CDS 40.0%
GAATGCTTCCCTTGATTCAT+AGG - chr4_4:63276715-63276734 None:intergenic 40.0%
! GAAGCATTCTTAGCTGATCA+AGG + chr4_4:63276726-63276745 Msa0694030:CDS 40.0%
GTTGTACTGAACATATGTGG+TGG + chr4_4:63276855-63276874 Msa0694030:CDS 40.0%
ATTTGTGCAACTAAGAAGCC+TGG + chr4_4:63276894-63276913 Msa0694030:CDS 40.0%
TCTCTTGACCACAATTGCTT+TGG + chr4_4:63276917-63276936 Msa0694030:CDS 40.0%
!! CAGCTTTAGAAGTTATGACG+CGG + chr4_4:63277200-63277219 Msa0694030:CDS 40.0%
AGGTGAGAGTAGCAAACAAT+TGG + chr4_4:63275103-63275122 Msa0694030:CDS 40.0%
GAACTTTCTCCTTCTTGATC+AGG + chr4_4:63275586-63275605 Msa0694030:intron 40.0%
TTAAGAACCCTAGCTAGATG+GGG - chr4_4:63275700-63275719 None:intergenic 40.0%
! CTTTAAGAACCCTAGCTAGA+TGG - chr4_4:63275702-63275721 None:intergenic 40.0%
CATCTAGCTAGGGTTCTTAA+AGG + chr4_4:63275700-63275719 Msa0694030:intron 40.0%
TCTAGCTAGGGTTCTTAAAG+GGG + chr4_4:63275702-63275721 Msa0694030:intron 40.0%
AAAGGGGCAATAGATCTACT+AGG + chr4_4:63275718-63275737 Msa0694030:intron 40.0%
AAGGGGCAATAGATCTACTA+GGG + chr4_4:63275719-63275738 Msa0694030:intron 40.0%
CCCTATCTATGGTAACAAGA+AGG - chr4_4:63275760-63275779 None:intergenic 40.0%
TGTTACCATAGATAGGGATC+TGG + chr4_4:63275763-63275782 Msa0694030:intron 40.0%
CCCGTATACAATGTCAAACT+TGG + chr4_4:63275786-63275805 Msa0694030:intron 40.0%
TCCATTCAGGTATGGAATTC+AGG + chr4_4:63275934-63275953 Msa0694030:intron 40.0%
ACCTGAATTCCATACCTGAA+TGG - chr4_4:63275938-63275957 None:intergenic 40.0%
TGAATTCCACAAAGGACGAA+TGG - chr4_4:63275970-63275989 None:intergenic 40.0%
GGCTGATAAATCAACCATTG+TGG + chr4_4:63276560-63276579 Msa0694030:intron 40.0%
CATCTGTAATCAACTCACAG+TGG + chr4_4:63276685-63276704 Msa0694030:CDS 40.0%
GAATGCTTCCCTTGATTCAT+AGG - chr4_4:63276715-63276734 None:intergenic 40.0%
! GAAGCATTCTTAGCTGATCA+AGG + chr4_4:63276726-63276745 Msa0694030:CDS 40.0%
GTTGTACTGAACATATGTGG+TGG + chr4_4:63276855-63276874 Msa0694030:CDS 40.0%
ATTTGTGCAACTAAGAAGCC+TGG + chr4_4:63276894-63276913 Msa0694030:CDS 40.0%
TCTCTTGACCACAATTGCTT+TGG + chr4_4:63276917-63276936 Msa0694030:CDS 40.0%
!! CAGCTTTAGAAGTTATGACG+CGG + chr4_4:63277200-63277219 Msa0694030:CDS 40.0%
CGATTTCTCTTCTTGCTCAC+GGG - chr4_4:63275176-63275195 None:intergenic 45.0%
CCGATTTCTCTTCTTGCTCA+CGG - chr4_4:63275177-63275196 None:intergenic 45.0%
CCGTGAGCAAGAAGAGAAAT+CGG + chr4_4:63275174-63275193 Msa0694030:CDS 45.0%
CGTGAGCAAGAAGAGAAATC+GGG + chr4_4:63275175-63275194 Msa0694030:CDS 45.0%
GTGAGCAAGAAGAGAAATCG+GGG + chr4_4:63275176-63275195 Msa0694030:CDS 45.0%
AGAAGGAAGTTCAGGAAGCA+AGG - chr4_4:63275345-63275364 None:intergenic 45.0%
GCTTCCTGAACTTCCTTCTA+AGG + chr4_4:63275346-63275365 Msa0694030:CDS 45.0%
! TAGCTAGATGGGGGCTTTTA+AGG - chr4_4:63275690-63275709 None:intergenic 45.0%
TTAAAAGCCCCCATCTAGCT+AGG + chr4_4:63275689-63275708 Msa0694030:intron 45.0%
TAAAAGCCCCCATCTAGCTA+GGG + chr4_4:63275690-63275709 Msa0694030:intron 45.0%
TAAGAACCCTAGCTAGATGG+GGG - chr4_4:63275699-63275718 None:intergenic 45.0%
TTTACTTCACGACCGAACTG+AGG - chr4_4:63275895-63275914 None:intergenic 45.0%
TCTGAACCATTCGTCCTTTG+TGG + chr4_4:63275961-63275980 Msa0694030:intron 45.0%
ACAGTATTAGAGCCAACCCA+TGG + chr4_4:63276244-63276263 Msa0694030:intron 45.0%
AAGACTTCAAGTCCATGGGT+TGG - chr4_4:63276259-63276278 None:intergenic 45.0%
ACTCAAATCTGTATCCCCAC+TGG + chr4_4:63276653-63276672 Msa0694030:CDS 45.0%
CTCAAATCTGTATCCCCACT+GGG + chr4_4:63276654-63276673 Msa0694030:CDS 45.0%
TCAAATCTGTATCCCCACTG+GGG + chr4_4:63276655-63276674 Msa0694030:CDS 45.0%
AGTGGCATCCCTATGAATCA+AGG + chr4_4:63276703-63276722 Msa0694030:CDS 45.0%
GTGGCATCCCTATGAATCAA+GGG + chr4_4:63276704-63276723 Msa0694030:CDS 45.0%
TTACCTCCACCACAACATGT+AGG + chr4_4:63276807-63276826 Msa0694030:CDS 45.0%
AAACCTACATGTTGTGGTGG+AGG - chr4_4:63276813-63276832 None:intergenic 45.0%
CAGGCAAAACAAGCTTCACA+TGG + chr4_4:63277145-63277164 Msa0694030:intron 45.0%
CGATTTCTCTTCTTGCTCAC+GGG - chr4_4:63275176-63275195 None:intergenic 45.0%
CCGATTTCTCTTCTTGCTCA+CGG - chr4_4:63275177-63275196 None:intergenic 45.0%
CCGTGAGCAAGAAGAGAAAT+CGG + chr4_4:63275174-63275193 Msa0694030:CDS 45.0%
CGTGAGCAAGAAGAGAAATC+GGG + chr4_4:63275175-63275194 Msa0694030:CDS 45.0%
GTGAGCAAGAAGAGAAATCG+GGG + chr4_4:63275176-63275195 Msa0694030:CDS 45.0%
AGAAGGAAGTTCAGGAAGCA+AGG - chr4_4:63275345-63275364 None:intergenic 45.0%
GCTTCCTGAACTTCCTTCTA+AGG + chr4_4:63275346-63275365 Msa0694030:CDS 45.0%
! TAGCTAGATGGGGGCTTTTA+AGG - chr4_4:63275690-63275709 None:intergenic 45.0%
TTAAAAGCCCCCATCTAGCT+AGG + chr4_4:63275689-63275708 Msa0694030:intron 45.0%
TAAAAGCCCCCATCTAGCTA+GGG + chr4_4:63275690-63275709 Msa0694030:intron 45.0%
TAAGAACCCTAGCTAGATGG+GGG - chr4_4:63275699-63275718 None:intergenic 45.0%
TTTACTTCACGACCGAACTG+AGG - chr4_4:63275895-63275914 None:intergenic 45.0%
TCTGAACCATTCGTCCTTTG+TGG + chr4_4:63275961-63275980 Msa0694030:intron 45.0%
ACAGTATTAGAGCCAACCCA+TGG + chr4_4:63276244-63276263 Msa0694030:intron 45.0%
AAGACTTCAAGTCCATGGGT+TGG - chr4_4:63276259-63276278 None:intergenic 45.0%
ACTCAAATCTGTATCCCCAC+TGG + chr4_4:63276653-63276672 Msa0694030:CDS 45.0%
CTCAAATCTGTATCCCCACT+GGG + chr4_4:63276654-63276673 Msa0694030:CDS 45.0%
TCAAATCTGTATCCCCACTG+GGG + chr4_4:63276655-63276674 Msa0694030:CDS 45.0%
AGTGGCATCCCTATGAATCA+AGG + chr4_4:63276703-63276722 Msa0694030:CDS 45.0%
GTGGCATCCCTATGAATCAA+GGG + chr4_4:63276704-63276723 Msa0694030:CDS 45.0%
TTACCTCCACCACAACATGT+AGG + chr4_4:63276807-63276826 Msa0694030:CDS 45.0%
AAACCTACATGTTGTGGTGG+AGG - chr4_4:63276813-63276832 None:intergenic 45.0%
CAGGCAAAACAAGCTTCACA+TGG + chr4_4:63277145-63277164 Msa0694030:intron 45.0%
GAGTTTGGGAGATCATCCCA+TGG - chr4_4:63275071-63275090 None:intergenic 50.0%
AGCAAGAAGAGAAATCGGGG+TGG + chr4_4:63275179-63275198 Msa0694030:CDS 50.0%
GCAAGAAGAGAAATCGGGGT+GGG + chr4_4:63275180-63275199 Msa0694030:CDS 50.0%
CAAGAAGAGAAATCGGGGTG+GGG + chr4_4:63275181-63275200 Msa0694030:CDS 50.0%
GTTCAGGAAGCAAGGCATGA+AGG - chr4_4:63275337-63275356 None:intergenic 50.0%
CTTCACTGCTGCATCCACAA+TGG - chr4_4:63276577-63276596 None:intergenic 50.0%
GCAATTGTGGTCAAGAGACC+AGG - chr4_4:63276915-63276934 None:intergenic 50.0%
! GACCACAATTGCTTTGGTGC+TGG + chr4_4:63276923-63276942 Msa0694030:CDS 50.0%
CTCCAGCACCAAAGCAATTG+TGG - chr4_4:63276928-63276947 None:intergenic 50.0%
TTCACATGGCGCAAACTCGA+TGG + chr4_4:63277159-63277178 Msa0694030:CDS 50.0%
GAGTTTGGGAGATCATCCCA+TGG - chr4_4:63275071-63275090 None:intergenic 50.0%
AGCAAGAAGAGAAATCGGGG+TGG + chr4_4:63275179-63275198 Msa0694030:CDS 50.0%
GCAAGAAGAGAAATCGGGGT+GGG + chr4_4:63275180-63275199 Msa0694030:CDS 50.0%
CAAGAAGAGAAATCGGGGTG+GGG + chr4_4:63275181-63275200 Msa0694030:CDS 50.0%
GTTCAGGAAGCAAGGCATGA+AGG - chr4_4:63275337-63275356 None:intergenic 50.0%
CTTCACTGCTGCATCCACAA+TGG - chr4_4:63276577-63276596 None:intergenic 50.0%
GCAATTGTGGTCAAGAGACC+AGG - chr4_4:63276915-63276934 None:intergenic 50.0%
! GACCACAATTGCTTTGGTGC+TGG + chr4_4:63276923-63276942 Msa0694030:CDS 50.0%
CTCCAGCACCAAAGCAATTG+TGG - chr4_4:63276928-63276947 None:intergenic 50.0%
TTCACATGGCGCAAACTCGA+TGG + chr4_4:63277159-63277178 Msa0694030:CDS 50.0%
ACGGGCCAGATCCCTATCTA+TGG - chr4_4:63275771-63275790 None:intergenic 55.0%
AGATGACTCACTCCCCAGTG+GGG - chr4_4:63276670-63276689 None:intergenic 55.0%
CAGATGACTCACTCCCCAGT+GGG - chr4_4:63276671-63276690 None:intergenic 55.0%
ACAGATGACTCACTCCCCAG+TGG - chr4_4:63276672-63276691 None:intergenic 55.0%
ACATGGCGCAAACTCGATGG+AGG + chr4_4:63277162-63277181 Msa0694030:CDS 55.0%
ACGGGCCAGATCCCTATCTA+TGG - chr4_4:63275771-63275790 None:intergenic 55.0%
AGATGACTCACTCCCCAGTG+GGG - chr4_4:63276670-63276689 None:intergenic 55.0%
CAGATGACTCACTCCCCAGT+GGG - chr4_4:63276671-63276690 None:intergenic 55.0%
ACAGATGACTCACTCCCCAG+TGG - chr4_4:63276672-63276691 None:intergenic 55.0%
ACATGGCGCAAACTCGATGG+AGG + chr4_4:63277162-63277181 Msa0694030:CDS 55.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 63275008 63277231 63275008 ID=Msa0694030;Name=Msa0694030
chr4_4 mRNA 63275008 63277231 63275008 ID=Msa0694030-mRNA-1;Parent=Msa0694030;Name=Msa0694030-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|301
chr4_4 exon 63275008 63275367 63275008 ID=Msa0694030-mRNA-1:exon:17723;Parent=Msa0694030-mRNA-1
chr4_4 exon 63276561 63277022 63276561 ID=Msa0694030-mRNA-1:exon:17724;Parent=Msa0694030-mRNA-1
chr4_4 exon 63277148 63277231 63277148 ID=Msa0694030-mRNA-1:exon:17725;Parent=Msa0694030-mRNA-1
chr4_4 CDS 63275008 63275367 63275008 ID=Msa0694030-mRNA-1:cds;Parent=Msa0694030-mRNA-1
chr4_4 CDS 63276561 63277022 63276561 ID=Msa0694030-mRNA-1:cds;Parent=Msa0694030-mRNA-1
chr4_4 CDS 63277148 63277231 63277148 ID=Msa0694030-mRNA-1:cds;Parent=Msa0694030-mRNA-1
Gene Sequence

>Msa0694030

ATGGCCATGAGTGTAGATCATGATCAAGATGTTCAAACAAATTTCATTTGGGAAAATCATCCATGGGATGATCTCCCAAACTCTAATCATAACTTAGGTGAGAGTAGCAAACAATTGGACACAAAACCATTGAACCAGAAAGAAGGAATCAATGAAGGAGAAGCTCCCGTGAGCAAGAAGAGAAATCGGGGTGGGGTTGTAATTAGAAGTGAGAATAATATTGCAACTGGTGAAGAAAAAGATAAAAAGTATCGTGATTTTGATCATGAAATGCACATATTGACTGAAAGAGAAAGGAGAAAGAAAATGAGGAACATGTTCGATAGCCTTCATGCCTTGCTTCCTGAACTTCCTTCTAAGGCTGATAAATCAACCATTGTGGATGCAGCAGTGAAGCACATTAAAAATCTTGAAGAAATTAAGGAAAAGCTAGAAAAGAAGAAGCAAGAAAGACTCAAATCTGTATCCCCACTGGGGAGTGAGTCATCTGTAATCAACTCACAGTGGCATCCCTATGAATCAAGGGAAGCATTCTTAGCTGATCAAGGATCCTCAAGTTATAATAATAACTTGTCTAGCGCAATTGTAACTTCAAATGCATTTTCATTACCTCCACCACAACATGTAGGTTTTAAAACATGGTCTTCTCAAAATGTTGTACTGAACATATGTGGTGGTGAAGCACAATTTTGCATTTGTGCAACTAAGAAGCCTGGTCTCTTGACCACAATTGCTTTGGTGCTGGAGAAACATAAGATTGATGTTATTTCTGCCAACATTATGTGCAATGCAAATGGAAACTTCTACATGATTATGGCCCATGCAAAACAAGCTTCACATGGCGCAAACTCGATGGAGGAAACTTACAAGCAAGCAGCTTTAGAAGTTATGACGCGGATCGCTTAA

Protein sequence

>Msa0694030

MAMSVDHDQDVQTNFIWENHPWDDLPNSNHNLGESSKQLDTKPLNQKEGINEGEAPVSKKRNRGGVVIRSENNIATGEEKDKKYRDFDHEMHILTERERRKKMRNMFDSLHALLPELPSKADKSTIVDAAVKHIKNLEEIKEKLEKKKQERLKSVSPLGSESSVINSQWHPYESREAFLADQGSSSYNNNLSSAIVTSNAFSLPPPQHVGFKTWSSQNVVLNICGGEAQFCICATKKPGLLTTIALVLEKHKIDVISANIMCNANGNFYMIMAHAKQASHGANSMEETYKQAALEVMTRIA*