Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0695460 | KEH31034.1 | 83.165 | 297 | 27 | 2 | 1 | 297 | 1 | 274 | 4.53e-166 | 472 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0695460 | sp|Q1PFR7|LEC2_ARATH | 46.667 | 105 | 55 | 1 | 98 | 201 | 163 | 267 | 6.76e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0695460 | A0A072UMM3 | 83.165 | 297 | 27 | 2 | 1 | 297 | 1 | 274 | 2.16e-166 | 472 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0695460 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0695460 | MtrunA17_Chr4g0047031 | 83.165 | 297 | 27 | 2 | 1 | 297 | 73 | 346 | 4.44e-170 | 474 |
| Msa0695460 | MtrunA17_Chr7g0251891 | 34.483 | 174 | 99 | 6 | 98 | 268 | 9 | 170 | 3.72e-20 | 86.7 |
| Msa0695460 | MtrunA17_Chr7g0237841 | 42.105 | 95 | 54 | 1 | 100 | 193 | 618 | 712 | 7.16e-19 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0695460 | AT1G28300.1 | 46.667 | 105 | 55 | 1 | 98 | 201 | 163 | 267 | 6.88e-25 | 102 |
| Msa0695460 | AT3G24650.1 | 34.783 | 161 | 94 | 4 | 100 | 256 | 566 | 719 | 4.39e-19 | 87.8 |
| Msa0695460 | AT3G26790.1 | 35.294 | 119 | 75 | 2 | 98 | 214 | 84 | 202 | 5.30e-19 | 85.9 |
Find 60 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCAGTCGACTAATAATT+TGG | 0.175655 | 4_4:+65004473 | Msa0695460:CDS |
| TTCCATAGGTATTGGATTAA+TGG | 0.179633 | 4_4:+65003728 | Msa0695460:intron |
| AGGTGACATTGCAGTATTAT+TGG | 0.262098 | 4_4:-65004532 | None:intergenic |
| TACTGCAATGTCACCTATAT+TGG | 0.265257 | 4_4:+65004539 | Msa0695460:CDS |
| TTGCAGTATTATTGGTTTCT+TGG | 0.266997 | 4_4:-65004524 | None:intergenic |
| AAACATGTGGAGTTCTTTCT+TGG | 0.273984 | 4_4:-65002918 | None:intergenic |
| TGCAGTATTATTGGTTTCTT+GGG | 0.347184 | 4_4:-65004523 | None:intergenic |
| TTTACAGTCACCTTTCCATC+TGG | 0.356987 | 4_4:-65002949 | None:intergenic |
| TGGTTTCTTGGGCGACTGAT+TGG | 0.387076 | 4_4:-65004512 | None:intergenic |
| TATATTGGACCATACCGTTT+TGG | 0.402644 | 4_4:+65004554 | Msa0695460:CDS |
| TATTAGTCGACTGAATTTGT+TGG | 0.408347 | 4_4:-65004467 | None:intergenic |
| TAAAACTAGAATGTATATTC+TGG | 0.416222 | 4_4:+65003751 | Msa0695460:CDS |
| ATCCCTTCTTTGCTAGGGGC+TGG | 0.418097 | 4_4:-65003550 | None:intergenic |
| CTTCAATCCCTTCTTTGCTA+GGG | 0.422481 | 4_4:-65003555 | None:intergenic |
| AACATGTGGAGTTCTTTCTT+GGG | 0.423807 | 4_4:-65002917 | None:intergenic |
| CTTCCAGCCCCTAGCAAAGA+AGG | 0.423970 | 4_4:+65003547 | Msa0695460:CDS |
| CTCCCATGCATAGTTTGTAA+TGG | 0.426934 | 4_4:-65003890 | None:intergenic |
| TCTTGGGCGACTGATTGGTT+TGG | 0.430360 | 4_4:-65004507 | None:intergenic |
| CTATGCATGGGAGATTATCT+AGG | 0.431047 | 4_4:+65003900 | Msa0695460:CDS |
| ACTTCAATCCCTTCTTTGCT+AGG | 0.433841 | 4_4:-65003556 | None:intergenic |
| AAAACGGTATGGTCCAATAT+AGG | 0.437137 | 4_4:-65004552 | None:intergenic |
| AAGAGCGATGTTAAGAACTA+TGG | 0.459102 | 4_4:+65003087 | Msa0695460:CDS |
| ACTTTATTCCTCTTCTCTGA+TGG | 0.466086 | 4_4:+65002696 | Msa0695460:CDS |
| ATCATTACCATCTGCCAAAA+CGG | 0.475707 | 4_4:-65004568 | None:intergenic |
| ATATATATTCTGGTCGTGAA+TGG | 0.483145 | 4_4:+65003590 | Msa0695460:CDS |
| ATGTATATTCTGGAGGATAC+AGG | 0.488201 | 4_4:+65003761 | Msa0695460:CDS |
| TCCTCAACTTGGAGTTGAAA+GGG | 0.488533 | 4_4:+65002753 | Msa0695460:CDS |
| TGGGCGACTGATTGGTTTGG+TGG | 0.491784 | 4_4:-65004504 | None:intergenic |
| CTTTATTCCTCTTCTCTGAT+GGG | 0.493478 | 4_4:+65002697 | Msa0695460:CDS |
| AGATTATCTAGGCCTTTATG+AGG | 0.503786 | 4_4:+65003911 | Msa0695460:CDS |
| AAACCATTACAAACTATGCA+TGG | 0.506884 | 4_4:+65003887 | Msa0695460:CDS |
| TTACAGTCACCTTTCCATCT+GGG | 0.507868 | 4_4:-65002948 | None:intergenic |
| TTCAATCCCTTCTTTGCTAG+GGG | 0.508172 | 4_4:-65003554 | None:intergenic |
| CATCGAGGAAATTGTATGCA+TGG | 0.513461 | 4_4:-65002659 | None:intergenic |
| TCCTTGCCTTGGTCTGCACA+AGG | 0.515897 | 4_4:-65004420 | None:intergenic |
| CTCCTCAACTTGGAGTTGAA+AGG | 0.517571 | 4_4:+65002752 | Msa0695460:CDS |
| ATCGAGGAAATTGTATGCAT+GGG | 0.519150 | 4_4:-65002658 | None:intergenic |
| GGAGTAGTTTGAATTATGAA+AGG | 0.529192 | 4_4:-65002733 | None:intergenic |
| ATTCAAACTACTCCTCAACT+TGG | 0.533290 | 4_4:+65002742 | Msa0695460:CDS |
| TGTTGGTTGGCCAAGTCTGA+TGG | 0.537691 | 4_4:-65004450 | None:intergenic |
| TACCATCTGCCAAAACGGTA+TGG | 0.545052 | 4_4:-65004563 | None:intergenic |
| TCCCTTTCAACTCCAAGTTG+AGG | 0.546205 | 4_4:-65002754 | None:intergenic |
| CGATGAACAACAAAGCAGCT+TGG | 0.554733 | 4_4:+65004608 | Msa0695460:CDS |
| AAAATTCAAATAGAGGGAGG+TGG | 0.561158 | 4_4:+65003516 | Msa0695460:intron |
| ACTTGGAGTTGAAAGGGAAG+AGG | 0.563033 | 4_4:+65002759 | Msa0695460:CDS |
| GAAGAGGAATAAAGTTCATG+AGG | 0.578069 | 4_4:-65002688 | None:intergenic |
| AACCATTACAAACTATGCAT+GGG | 0.584630 | 4_4:+65003888 | Msa0695460:CDS |
| AGTCGACTGAATTTGTTGGT+TGG | 0.588883 | 4_4:-65004463 | None:intergenic |
| GGCTTGTGATCTATCGACAC+TGG | 0.594889 | 4_4:+65004389 | Msa0695460:CDS |
| ACTTTGTCCCATCAGAGAAG+AGG | 0.602953 | 4_4:-65002704 | None:intergenic |
| AACTAGAATGTATATTCTGG+AGG | 0.612428 | 4_4:+65003754 | Msa0695460:CDS |
| GCAGATGGTAATGATGGTGG+TGG | 0.618739 | 4_4:+65004576 | Msa0695460:CDS |
| TTCCAGCCCCTAGCAAAGAA+GGG | 0.619594 | 4_4:+65003548 | Msa0695460:CDS |
| GCAAAATTGCTAGAGAACAA+AGG | 0.622012 | 4_4:+65002809 | Msa0695460:CDS |
| ACCTTGTGCAGACCAAGGCA+AGG | 0.622413 | 4_4:+65004419 | Msa0695460:CDS |
| CTCTTACCTTGTGCAGACCA+AGG | 0.626902 | 4_4:+65004414 | Msa0695460:CDS |
| TGGTCGCATTGTCCTCCCAA+AGG | 0.635548 | 4_4:+65003107 | Msa0695460:CDS |
| TTGGCAGATGGTAATGATGG+TGG | 0.656936 | 4_4:+65004573 | Msa0695460:CDS |
| TTCATGAGGTTGATTCATCG+AGG | 0.675142 | 4_4:-65002674 | None:intergenic |
| AAGAAGCCCTCACCTTTGGG+AGG | 0.679981 | 4_4:-65003119 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATAAATCATAACAA+CGG | - | chr4_4:65003230-65003249 | None:intergenic | 10.0% |
| !!! | TATTTTTATTTTTGTTCTTT+TGG | + | chr4_4:65003461-65003480 | Msa0695460:intron | 10.0% |
| !!! | TTTTTTATAAATCATAACAA+CGG | - | chr4_4:65003230-65003249 | None:intergenic | 10.0% |
| !!! | TATTTTTATTTTTGTTCTTT+TGG | + | chr4_4:65003461-65003480 | Msa0695460:intron | 10.0% |
| !!! | TTTTTATAAATCATAACAAC+GGG | - | chr4_4:65003229-65003248 | None:intergenic | 15.0% |
| !!! | TTTTTATAAATCATAACAAC+GGG | - | chr4_4:65003229-65003248 | None:intergenic | 15.0% |
| !!! | ATTTTCAAGGATATATATTC+TGG | + | chr4_4:65003580-65003599 | Msa0695460:CDS | 20.0% |
| !! | TAAAACTAGAATGTATATTC+TGG | + | chr4_4:65003751-65003770 | Msa0695460:CDS | 20.0% |
| !!! | TACAATCATTTTTTTCATCT+GGG | - | chr4_4:65004132-65004151 | None:intergenic | 20.0% |
| !!! | ATTTTCAAGGATATATATTC+TGG | + | chr4_4:65003580-65003599 | Msa0695460:CDS | 20.0% |
| !! | TAAAACTAGAATGTATATTC+TGG | + | chr4_4:65003751-65003770 | Msa0695460:CDS | 20.0% |
| !!! | TACAATCATTTTTTTCATCT+GGG | - | chr4_4:65004132-65004151 | None:intergenic | 20.0% |
| ! | AGAAAAAAATTGAAGCAAAG+AGG | + | chr4_4:65002785-65002804 | Msa0695460:CDS | 25.0% |
| !! | TGTGGTATTTATTACTCTTT+TGG | + | chr4_4:65002991-65003010 | Msa0695460:intron | 25.0% |
| !! | ATTTTCTCTCTTAATGTAAC+AGG | + | chr4_4:65003855-65003874 | Msa0695460:intron | 25.0% |
| !! | TTTTCTCTCTTAATGTAACA+GGG | + | chr4_4:65003856-65003875 | Msa0695460:intron | 25.0% |
| !!! | CTACAATCATTTTTTTCATC+TGG | - | chr4_4:65004133-65004152 | None:intergenic | 25.0% |
| !!! | TATTGTTTTACAACTCACAA+TGG | - | chr4_4:65004301-65004320 | None:intergenic | 25.0% |
| ! | AATTCAGTCGACTAATAATT+TGG | + | chr4_4:65004473-65004492 | Msa0695460:CDS | 25.0% |
| ! | AAACATCAAAAATATCGTCA+AGG | - | chr4_4:65004650-65004669 | None:intergenic | 25.0% |
| ! | AGAAAAAAATTGAAGCAAAG+AGG | + | chr4_4:65002785-65002804 | Msa0695460:CDS | 25.0% |
| !! | TGTGGTATTTATTACTCTTT+TGG | + | chr4_4:65002991-65003010 | Msa0695460:intron | 25.0% |
| !! | ATTTTCTCTCTTAATGTAAC+AGG | + | chr4_4:65003855-65003874 | Msa0695460:intron | 25.0% |
| !! | TTTTCTCTCTTAATGTAACA+GGG | + | chr4_4:65003856-65003875 | Msa0695460:intron | 25.0% |
| !!! | CTACAATCATTTTTTTCATC+TGG | - | chr4_4:65004133-65004152 | None:intergenic | 25.0% |
| !!! | TATTGTTTTACAACTCACAA+TGG | - | chr4_4:65004301-65004320 | None:intergenic | 25.0% |
| ! | AATTCAGTCGACTAATAATT+TGG | + | chr4_4:65004473-65004492 | Msa0695460:CDS | 25.0% |
| ! | AAACATCAAAAATATCGTCA+AGG | - | chr4_4:65004650-65004669 | None:intergenic | 25.0% |
| GGAGTAGTTTGAATTATGAA+AGG | - | chr4_4:65002736-65002755 | None:intergenic | 30.0% | |
| ACAAAGCTTGAAATCTTTCA+TGG | + | chr4_4:65003420-65003439 | Msa0695460:intron | 30.0% | |
| TTCTCCCAAAATTCAAATAG+AGG | + | chr4_4:65003509-65003528 | Msa0695460:intron | 30.0% | |
| TCTCCCAAAATTCAAATAGA+GGG | + | chr4_4:65003510-65003529 | Msa0695460:intron | 30.0% | |
| ATATATATTCTGGTCGTGAA+TGG | + | chr4_4:65003590-65003609 | Msa0695460:CDS | 30.0% | |
| AGTTTATACCCATTAGAGTT+TGG | - | chr4_4:65003703-65003722 | None:intergenic | 30.0% | |
| ! | AAACTCTAATGGGTATAAAC+TGG | + | chr4_4:65003702-65003721 | Msa0695460:intron | 30.0% |
| GTATAAACTGGAAATTCCAT+AGG | + | chr4_4:65003714-65003733 | Msa0695460:intron | 30.0% | |
| !! | TTCCATAGGTATTGGATTAA+TGG | + | chr4_4:65003728-65003747 | Msa0695460:intron | 30.0% |
| TACCATTAATCCAATACCTA+TGG | - | chr4_4:65003733-65003752 | None:intergenic | 30.0% | |
| AACTAGAATGTATATTCTGG+AGG | + | chr4_4:65003754-65003773 | Msa0695460:CDS | 30.0% | |
| AAATTAGCAACACTAAGAAG+TGG | - | chr4_4:65003794-65003813 | None:intergenic | 30.0% | |
| ! | TGTTTCAGTTCTCATGATTT+TGG | + | chr4_4:65003818-65003837 | Msa0695460:intron | 30.0% |
| ! | GTTTCAGTTCTCATGATTTT+GGG | + | chr4_4:65003819-65003838 | Msa0695460:intron | 30.0% |
| AAACCATTACAAACTATGCA+TGG | + | chr4_4:65003887-65003906 | Msa0695460:CDS | 30.0% | |
| AACCATTACAAACTATGCAT+GGG | + | chr4_4:65003888-65003907 | Msa0695460:CDS | 30.0% | |
| !!! | TTTTAAGTTCGTCCTCATAA+AGG | - | chr4_4:65003926-65003945 | None:intergenic | 30.0% |
| TGAGGACGAACTTAAAAATT+TGG | + | chr4_4:65003929-65003948 | Msa0695460:CDS | 30.0% | |
| ATAAGAGAAGTCTGTAAACA+TGG | - | chr4_4:65004194-65004213 | None:intergenic | 30.0% | |
| TATTAGTCGACTGAATTTGT+TGG | - | chr4_4:65004470-65004489 | None:intergenic | 30.0% | |
| !! | TGCAGTATTATTGGTTTCTT+GGG | - | chr4_4:65004526-65004545 | None:intergenic | 30.0% |
| !! | TTGCAGTATTATTGGTTTCT+TGG | - | chr4_4:65004527-65004546 | None:intergenic | 30.0% |
| GGAGTAGTTTGAATTATGAA+AGG | - | chr4_4:65002736-65002755 | None:intergenic | 30.0% | |
| ACAAAGCTTGAAATCTTTCA+TGG | + | chr4_4:65003420-65003439 | Msa0695460:intron | 30.0% | |
| TTCTCCCAAAATTCAAATAG+AGG | + | chr4_4:65003509-65003528 | Msa0695460:intron | 30.0% | |
| TCTCCCAAAATTCAAATAGA+GGG | + | chr4_4:65003510-65003529 | Msa0695460:intron | 30.0% | |
| ATATATATTCTGGTCGTGAA+TGG | + | chr4_4:65003590-65003609 | Msa0695460:CDS | 30.0% | |
| AGTTTATACCCATTAGAGTT+TGG | - | chr4_4:65003703-65003722 | None:intergenic | 30.0% | |
| ! | AAACTCTAATGGGTATAAAC+TGG | + | chr4_4:65003702-65003721 | Msa0695460:intron | 30.0% |
| GTATAAACTGGAAATTCCAT+AGG | + | chr4_4:65003714-65003733 | Msa0695460:intron | 30.0% | |
| !! | TTCCATAGGTATTGGATTAA+TGG | + | chr4_4:65003728-65003747 | Msa0695460:intron | 30.0% |
| TACCATTAATCCAATACCTA+TGG | - | chr4_4:65003733-65003752 | None:intergenic | 30.0% | |
| AACTAGAATGTATATTCTGG+AGG | + | chr4_4:65003754-65003773 | Msa0695460:CDS | 30.0% | |
| AAATTAGCAACACTAAGAAG+TGG | - | chr4_4:65003794-65003813 | None:intergenic | 30.0% | |
| ! | TGTTTCAGTTCTCATGATTT+TGG | + | chr4_4:65003818-65003837 | Msa0695460:intron | 30.0% |
| ! | GTTTCAGTTCTCATGATTTT+GGG | + | chr4_4:65003819-65003838 | Msa0695460:intron | 30.0% |
| AAACCATTACAAACTATGCA+TGG | + | chr4_4:65003887-65003906 | Msa0695460:CDS | 30.0% | |
| AACCATTACAAACTATGCAT+GGG | + | chr4_4:65003888-65003907 | Msa0695460:CDS | 30.0% | |
| !!! | TTTTAAGTTCGTCCTCATAA+AGG | - | chr4_4:65003926-65003945 | None:intergenic | 30.0% |
| TGAGGACGAACTTAAAAATT+TGG | + | chr4_4:65003929-65003948 | Msa0695460:CDS | 30.0% | |
| ATAAGAGAAGTCTGTAAACA+TGG | - | chr4_4:65004194-65004213 | None:intergenic | 30.0% | |
| TATTAGTCGACTGAATTTGT+TGG | - | chr4_4:65004470-65004489 | None:intergenic | 30.0% | |
| !! | TGCAGTATTATTGGTTTCTT+GGG | - | chr4_4:65004526-65004545 | None:intergenic | 30.0% |
| !! | TTGCAGTATTATTGGTTTCT+TGG | - | chr4_4:65004527-65004546 | None:intergenic | 30.0% |
| GAAGAGGAATAAAGTTCATG+AGG | - | chr4_4:65002691-65002710 | None:intergenic | 35.0% | |
| ACTTTATTCCTCTTCTCTGA+TGG | + | chr4_4:65002696-65002715 | Msa0695460:CDS | 35.0% | |
| CTTTATTCCTCTTCTCTGAT+GGG | + | chr4_4:65002697-65002716 | Msa0695460:CDS | 35.0% | |
| ATTCAAACTACTCCTCAACT+TGG | + | chr4_4:65002742-65002761 | Msa0695460:CDS | 35.0% | |
| GCAAAATTGCTAGAGAACAA+AGG | + | chr4_4:65002809-65002828 | Msa0695460:CDS | 35.0% | |
| AACATGTGGAGTTCTTTCTT+GGG | - | chr4_4:65002920-65002939 | None:intergenic | 35.0% | |
| AAACATGTGGAGTTCTTTCT+TGG | - | chr4_4:65002921-65002940 | None:intergenic | 35.0% | |
| TCTGGGTTGTAAAAAACATG+TGG | - | chr4_4:65002934-65002953 | None:intergenic | 35.0% | |
| !!! | CATGTTTTTTACAACCCAGA+TGG | + | chr4_4:65002934-65002953 | Msa0695460:CDS | 35.0% |
| ! | TTTTTACAACCCAGATGGAA+AGG | + | chr4_4:65002939-65002958 | Msa0695460:CDS | 35.0% |
| AAGAGCGATGTTAAGAACTA+TGG | + | chr4_4:65003087-65003106 | Msa0695460:CDS | 35.0% | |
| !! | TGTGTCACTGTATTTTCGAA+AGG | - | chr4_4:65003385-65003404 | None:intergenic | 35.0% |
| ! | CCTCCCTCTATTTGAATTTT+GGG | - | chr4_4:65003516-65003535 | None:intergenic | 35.0% |
| ! | ACCTCCCTCTATTTGAATTT+TGG | - | chr4_4:65003517-65003536 | None:intergenic | 35.0% |
| AAAATTCAAATAGAGGGAGG+TGG | + | chr4_4:65003516-65003535 | Msa0695460:intron | 35.0% | |
| !! | AGGGATTGAAGTCATTTTCA+AGG | + | chr4_4:65003567-65003586 | Msa0695460:CDS | 35.0% |
| TATACCCATTAGAGTTTGGA+AGG | - | chr4_4:65003699-65003718 | None:intergenic | 35.0% | |
| ACTGGAAATTCCATAGGTAT+TGG | + | chr4_4:65003720-65003739 | Msa0695460:intron | 35.0% | |
| ! | ATGTATATTCTGGAGGATAC+AGG | + | chr4_4:65003761-65003780 | Msa0695460:CDS | 35.0% |
| AGATTATCTAGGCCTTTATG+AGG | + | chr4_4:65003911-65003930 | Msa0695460:CDS | 35.0% | |
| GAAGTCTGTAAACATGGTAA+TGG | - | chr4_4:65004188-65004207 | None:intergenic | 35.0% | |
| AGGTGACATTGCAGTATTAT+TGG | - | chr4_4:65004535-65004554 | None:intergenic | 35.0% | |
| TACTGCAATGTCACCTATAT+TGG | + | chr4_4:65004539-65004558 | Msa0695460:CDS | 35.0% | |
| AAAACGGTATGGTCCAATAT+AGG | - | chr4_4:65004555-65004574 | None:intergenic | 35.0% | |
| ! | TATATTGGACCATACCGTTT+TGG | + | chr4_4:65004554-65004573 | Msa0695460:CDS | 35.0% |
| ATCATTACCATCTGCCAAAA+CGG | - | chr4_4:65004571-65004590 | None:intergenic | 35.0% | |
| GAAGAGGAATAAAGTTCATG+AGG | - | chr4_4:65002691-65002710 | None:intergenic | 35.0% | |
| ACTTTATTCCTCTTCTCTGA+TGG | + | chr4_4:65002696-65002715 | Msa0695460:CDS | 35.0% | |
| CTTTATTCCTCTTCTCTGAT+GGG | + | chr4_4:65002697-65002716 | Msa0695460:CDS | 35.0% | |
| ATTCAAACTACTCCTCAACT+TGG | + | chr4_4:65002742-65002761 | Msa0695460:CDS | 35.0% | |
| GCAAAATTGCTAGAGAACAA+AGG | + | chr4_4:65002809-65002828 | Msa0695460:CDS | 35.0% | |
| AACATGTGGAGTTCTTTCTT+GGG | - | chr4_4:65002920-65002939 | None:intergenic | 35.0% | |
| AAACATGTGGAGTTCTTTCT+TGG | - | chr4_4:65002921-65002940 | None:intergenic | 35.0% | |
| TCTGGGTTGTAAAAAACATG+TGG | - | chr4_4:65002934-65002953 | None:intergenic | 35.0% | |
| !!! | CATGTTTTTTACAACCCAGA+TGG | + | chr4_4:65002934-65002953 | Msa0695460:CDS | 35.0% |
| ! | TTTTTACAACCCAGATGGAA+AGG | + | chr4_4:65002939-65002958 | Msa0695460:CDS | 35.0% |
| AAGAGCGATGTTAAGAACTA+TGG | + | chr4_4:65003087-65003106 | Msa0695460:CDS | 35.0% | |
| !! | TGTGTCACTGTATTTTCGAA+AGG | - | chr4_4:65003385-65003404 | None:intergenic | 35.0% |
| ! | CCTCCCTCTATTTGAATTTT+GGG | - | chr4_4:65003516-65003535 | None:intergenic | 35.0% |
| ! | ACCTCCCTCTATTTGAATTT+TGG | - | chr4_4:65003517-65003536 | None:intergenic | 35.0% |
| AAAATTCAAATAGAGGGAGG+TGG | + | chr4_4:65003516-65003535 | Msa0695460:intron | 35.0% | |
| !! | AGGGATTGAAGTCATTTTCA+AGG | + | chr4_4:65003567-65003586 | Msa0695460:CDS | 35.0% |
| TATACCCATTAGAGTTTGGA+AGG | - | chr4_4:65003699-65003718 | None:intergenic | 35.0% | |
| ACTGGAAATTCCATAGGTAT+TGG | + | chr4_4:65003720-65003739 | Msa0695460:intron | 35.0% | |
| ! | ATGTATATTCTGGAGGATAC+AGG | + | chr4_4:65003761-65003780 | Msa0695460:CDS | 35.0% |
| AGATTATCTAGGCCTTTATG+AGG | + | chr4_4:65003911-65003930 | Msa0695460:CDS | 35.0% | |
| GAAGTCTGTAAACATGGTAA+TGG | - | chr4_4:65004188-65004207 | None:intergenic | 35.0% | |
| AGGTGACATTGCAGTATTAT+TGG | - | chr4_4:65004535-65004554 | None:intergenic | 35.0% | |
| TACTGCAATGTCACCTATAT+TGG | + | chr4_4:65004539-65004558 | Msa0695460:CDS | 35.0% | |
| AAAACGGTATGGTCCAATAT+AGG | - | chr4_4:65004555-65004574 | None:intergenic | 35.0% | |
| ! | TATATTGGACCATACCGTTT+TGG | + | chr4_4:65004554-65004573 | Msa0695460:CDS | 35.0% |
| ATCATTACCATCTGCCAAAA+CGG | - | chr4_4:65004571-65004590 | None:intergenic | 35.0% | |
| ! | TTCATGAGGTTGATTCATCG+AGG | - | chr4_4:65002677-65002696 | None:intergenic | 40.0% |
| TCCTCAACTTGGAGTTGAAA+GGG | + | chr4_4:65002753-65002772 | Msa0695460:CDS | 40.0% | |
| TTACAGTCACCTTTCCATCT+GGG | - | chr4_4:65002951-65002970 | None:intergenic | 40.0% | |
| TTTACAGTCACCTTTCCATC+TGG | - | chr4_4:65002952-65002971 | None:intergenic | 40.0% | |
| CCCAAAATTCAAATAGAGGG+AGG | + | chr4_4:65003513-65003532 | Msa0695460:intron | 40.0% | |
| TTCAATCCCTTCTTTGCTAG+GGG | - | chr4_4:65003557-65003576 | None:intergenic | 40.0% | |
| CTTCAATCCCTTCTTTGCTA+GGG | - | chr4_4:65003558-65003577 | None:intergenic | 40.0% | |
| ACTTCAATCCCTTCTTTGCT+AGG | - | chr4_4:65003559-65003578 | None:intergenic | 40.0% | |
| ! | CTCCCATGCATAGTTTGTAA+TGG | - | chr4_4:65003893-65003912 | None:intergenic | 40.0% |
| CTATGCATGGGAGATTATCT+AGG | + | chr4_4:65003900-65003919 | Msa0695460:CDS | 40.0% | |
| GCAGTATGTGTGCACAAAAA+AGG | + | chr4_4:65004368-65004387 | Msa0695460:intron | 40.0% | |
| ! | ATGGTTCTTTTTCCTTGCCT+TGG | - | chr4_4:65004434-65004453 | None:intergenic | 40.0% |
| GGAAAAAGAACCATCAGACT+TGG | + | chr4_4:65004440-65004459 | Msa0695460:CDS | 40.0% | |
| !! | AGTCGACTGAATTTGTTGGT+TGG | - | chr4_4:65004466-65004485 | None:intergenic | 40.0% |
| !! | GTTTTGGCAGATGGTAATGA+TGG | + | chr4_4:65004570-65004589 | Msa0695460:CDS | 40.0% |
| ! | TTCATGAGGTTGATTCATCG+AGG | - | chr4_4:65002677-65002696 | None:intergenic | 40.0% |
| TCCTCAACTTGGAGTTGAAA+GGG | + | chr4_4:65002753-65002772 | Msa0695460:CDS | 40.0% | |
| TTACAGTCACCTTTCCATCT+GGG | - | chr4_4:65002951-65002970 | None:intergenic | 40.0% | |
| TTTACAGTCACCTTTCCATC+TGG | - | chr4_4:65002952-65002971 | None:intergenic | 40.0% | |
| CCCAAAATTCAAATAGAGGG+AGG | + | chr4_4:65003513-65003532 | Msa0695460:intron | 40.0% | |
| TTCAATCCCTTCTTTGCTAG+GGG | - | chr4_4:65003557-65003576 | None:intergenic | 40.0% | |
| CTTCAATCCCTTCTTTGCTA+GGG | - | chr4_4:65003558-65003577 | None:intergenic | 40.0% | |
| ACTTCAATCCCTTCTTTGCT+AGG | - | chr4_4:65003559-65003578 | None:intergenic | 40.0% | |
| ! | CTCCCATGCATAGTTTGTAA+TGG | - | chr4_4:65003893-65003912 | None:intergenic | 40.0% |
| CTATGCATGGGAGATTATCT+AGG | + | chr4_4:65003900-65003919 | Msa0695460:CDS | 40.0% | |
| GCAGTATGTGTGCACAAAAA+AGG | + | chr4_4:65004368-65004387 | Msa0695460:intron | 40.0% | |
| ! | ATGGTTCTTTTTCCTTGCCT+TGG | - | chr4_4:65004434-65004453 | None:intergenic | 40.0% |
| GGAAAAAGAACCATCAGACT+TGG | + | chr4_4:65004440-65004459 | Msa0695460:CDS | 40.0% | |
| !! | AGTCGACTGAATTTGTTGGT+TGG | - | chr4_4:65004466-65004485 | None:intergenic | 40.0% |
| !! | GTTTTGGCAGATGGTAATGA+TGG | + | chr4_4:65004570-65004589 | Msa0695460:CDS | 40.0% |
| ACTTTGTCCCATCAGAGAAG+AGG | - | chr4_4:65002707-65002726 | None:intergenic | 45.0% | |
| CTCCTCAACTTGGAGTTGAA+AGG | + | chr4_4:65002752-65002771 | Msa0695460:CDS | 45.0% | |
| TCCCTTTCAACTCCAAGTTG+AGG | - | chr4_4:65002757-65002776 | None:intergenic | 45.0% | |
| ACTTGGAGTTGAAAGGGAAG+AGG | + | chr4_4:65002759-65002778 | Msa0695460:CDS | 45.0% | |
| ATGAAGAAGCCCTCACCTTT+GGG | - | chr4_4:65003125-65003144 | None:intergenic | 45.0% | |
| GTGAGGGCTTCTTCATCAAA+GGG | + | chr4_4:65003129-65003148 | Msa0695460:intron | 45.0% | |
| TGTCGCCTTCCAAACTCTAA+TGG | + | chr4_4:65003691-65003710 | Msa0695460:intron | 45.0% | |
| GTCGCCTTCCAAACTCTAAT+GGG | + | chr4_4:65003692-65003711 | Msa0695460:intron | 45.0% | |
| CATGAACTCTTCTTTGTGCG+AGG | + | chr4_4:65004343-65004362 | Msa0695460:intron | 45.0% | |
| TACCATCTGCCAAAACGGTA+TGG | - | chr4_4:65004566-65004585 | None:intergenic | 45.0% | |
| ! | TTGGCAGATGGTAATGATGG+TGG | + | chr4_4:65004573-65004592 | Msa0695460:CDS | 45.0% |
| CGATGAACAACAAAGCAGCT+TGG | + | chr4_4:65004608-65004627 | Msa0695460:CDS | 45.0% | |
| ACTTTGTCCCATCAGAGAAG+AGG | - | chr4_4:65002707-65002726 | None:intergenic | 45.0% | |
| CTCCTCAACTTGGAGTTGAA+AGG | + | chr4_4:65002752-65002771 | Msa0695460:CDS | 45.0% | |
| TCCCTTTCAACTCCAAGTTG+AGG | - | chr4_4:65002757-65002776 | None:intergenic | 45.0% | |
| ACTTGGAGTTGAAAGGGAAG+AGG | + | chr4_4:65002759-65002778 | Msa0695460:CDS | 45.0% | |
| ATGAAGAAGCCCTCACCTTT+GGG | - | chr4_4:65003125-65003144 | None:intergenic | 45.0% | |
| GTGAGGGCTTCTTCATCAAA+GGG | + | chr4_4:65003129-65003148 | Msa0695460:intron | 45.0% | |
| TGTCGCCTTCCAAACTCTAA+TGG | + | chr4_4:65003691-65003710 | Msa0695460:intron | 45.0% | |
| GTCGCCTTCCAAACTCTAAT+GGG | + | chr4_4:65003692-65003711 | Msa0695460:intron | 45.0% | |
| CATGAACTCTTCTTTGTGCG+AGG | + | chr4_4:65004343-65004362 | Msa0695460:intron | 45.0% | |
| TACCATCTGCCAAAACGGTA+TGG | - | chr4_4:65004566-65004585 | None:intergenic | 45.0% | |
| ! | TTGGCAGATGGTAATGATGG+TGG | + | chr4_4:65004573-65004592 | Msa0695460:CDS | 45.0% |
| CGATGAACAACAAAGCAGCT+TGG | + | chr4_4:65004608-65004627 | Msa0695460:CDS | 45.0% | |
| !! | TTTAATTAATTATATTTATG+TGG | + | chr4_4:65002973-65002992 | Msa0695460:intron | 5.0% |
| !!! | ATATTAATAACTTTTATAAA+AGG | - | chr4_4:65003967-65003986 | None:intergenic | 5.0% |
| !! | TTTAATTAATTATATTTATG+TGG | + | chr4_4:65002973-65002992 | Msa0695460:intron | 5.0% |
| !!! | ATATTAATAACTTTTATAAA+AGG | - | chr4_4:65003967-65003986 | None:intergenic | 5.0% |
| CATTGTCCTCCCAAAGGTGA+GGG | + | chr4_4:65003113-65003132 | Msa0695460:intron | 50.0% | |
| GATGAAGAAGCCCTCACCTT+TGG | - | chr4_4:65003126-65003145 | None:intergenic | 50.0% | |
| GGTGAGGGCTTCTTCATCAA+AGG | + | chr4_4:65003128-65003147 | Msa0695460:intron | 50.0% | |
| TTCCAGCCCCTAGCAAAGAA+GGG | + | chr4_4:65003548-65003567 | Msa0695460:CDS | 50.0% | |
| ! | TCTGGGAAGTGTGCATTGAC+TGG | - | chr4_4:65004115-65004134 | None:intergenic | 50.0% |
| GGCTTGTGATCTATCGACAC+TGG | + | chr4_4:65004389-65004408 | Msa0695460:CDS | 50.0% | |
| CTCTTACCTTGTGCAGACCA+AGG | + | chr4_4:65004414-65004433 | Msa0695460:CDS | 50.0% | |
| ! | TGTTGGTTGGCCAAGTCTGA+TGG | - | chr4_4:65004453-65004472 | None:intergenic | 50.0% |
| ! | TCTTGGGCGACTGATTGGTT+TGG | - | chr4_4:65004510-65004529 | None:intergenic | 50.0% |
| TGGTTTCTTGGGCGACTGAT+TGG | - | chr4_4:65004515-65004534 | None:intergenic | 50.0% | |
| !! | GACCATACCGTTTTGGCAGA+TGG | + | chr4_4:65004561-65004580 | Msa0695460:CDS | 50.0% |
| !! | GCAGATGGTAATGATGGTGG+TGG | + | chr4_4:65004576-65004595 | Msa0695460:CDS | 50.0% |
| CATTGTCCTCCCAAAGGTGA+GGG | + | chr4_4:65003113-65003132 | Msa0695460:intron | 50.0% | |
| GATGAAGAAGCCCTCACCTT+TGG | - | chr4_4:65003126-65003145 | None:intergenic | 50.0% | |
| GGTGAGGGCTTCTTCATCAA+AGG | + | chr4_4:65003128-65003147 | Msa0695460:intron | 50.0% | |
| TTCCAGCCCCTAGCAAAGAA+GGG | + | chr4_4:65003548-65003567 | Msa0695460:CDS | 50.0% | |
| ! | TCTGGGAAGTGTGCATTGAC+TGG | - | chr4_4:65004115-65004134 | None:intergenic | 50.0% |
| GGCTTGTGATCTATCGACAC+TGG | + | chr4_4:65004389-65004408 | Msa0695460:CDS | 50.0% | |
| CTCTTACCTTGTGCAGACCA+AGG | + | chr4_4:65004414-65004433 | Msa0695460:CDS | 50.0% | |
| ! | TGTTGGTTGGCCAAGTCTGA+TGG | - | chr4_4:65004453-65004472 | None:intergenic | 50.0% |
| ! | TCTTGGGCGACTGATTGGTT+TGG | - | chr4_4:65004510-65004529 | None:intergenic | 50.0% |
| TGGTTTCTTGGGCGACTGAT+TGG | - | chr4_4:65004515-65004534 | None:intergenic | 50.0% | |
| !! | GACCATACCGTTTTGGCAGA+TGG | + | chr4_4:65004561-65004580 | Msa0695460:CDS | 50.0% |
| !! | GCAGATGGTAATGATGGTGG+TGG | + | chr4_4:65004576-65004595 | Msa0695460:CDS | 50.0% |
| TGGTCGCATTGTCCTCCCAA+AGG | + | chr4_4:65003107-65003126 | Msa0695460:CDS | 55.0% | |
| GCATTGTCCTCCCAAAGGTG+AGG | + | chr4_4:65003112-65003131 | Msa0695460:intron | 55.0% | |
| AAGAAGCCCTCACCTTTGGG+AGG | - | chr4_4:65003122-65003141 | None:intergenic | 55.0% | |
| CTTCCAGCCCCTAGCAAAGA+AGG | + | chr4_4:65003547-65003566 | Msa0695460:CDS | 55.0% | |
| ATCCCTTCTTTGCTAGGGGC+TGG | - | chr4_4:65003553-65003572 | None:intergenic | 55.0% | |
| ACCTTGTGCAGACCAAGGCA+AGG | + | chr4_4:65004419-65004438 | Msa0695460:CDS | 55.0% | |
| TCCTTGCCTTGGTCTGCACA+AGG | - | chr4_4:65004423-65004442 | None:intergenic | 55.0% | |
| !! | TGGGCGACTGATTGGTTTGG+TGG | - | chr4_4:65004507-65004526 | None:intergenic | 55.0% |
| TGGTCGCATTGTCCTCCCAA+AGG | + | chr4_4:65003107-65003126 | Msa0695460:CDS | 55.0% | |
| GCATTGTCCTCCCAAAGGTG+AGG | + | chr4_4:65003112-65003131 | Msa0695460:intron | 55.0% | |
| AAGAAGCCCTCACCTTTGGG+AGG | - | chr4_4:65003122-65003141 | None:intergenic | 55.0% | |
| CTTCCAGCCCCTAGCAAAGA+AGG | + | chr4_4:65003547-65003566 | Msa0695460:CDS | 55.0% | |
| ATCCCTTCTTTGCTAGGGGC+TGG | - | chr4_4:65003553-65003572 | None:intergenic | 55.0% | |
| ACCTTGTGCAGACCAAGGCA+AGG | + | chr4_4:65004419-65004438 | Msa0695460:CDS | 55.0% | |
| TCCTTGCCTTGGTCTGCACA+AGG | - | chr4_4:65004423-65004442 | None:intergenic | 55.0% | |
| !! | TGGGCGACTGATTGGTTTGG+TGG | - | chr4_4:65004507-65004526 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 65002661 | 65004674 | 65002661 | ID=Msa0695460;Name=Msa0695460 |
| chr4_4 | mRNA | 65002661 | 65004674 | 65002661 | ID=Msa0695460-mRNA-1;Parent=Msa0695460;Name=Msa0695460-mRNA-1;_AED=0.08;_eAED=0.14;_QI=0|0|0|1|1|1|6|0|298 |
| chr4_4 | exon | 65002661 | 65002960 | 65002661 | ID=Msa0695460-mRNA-1:exon:18675;Parent=Msa0695460-mRNA-1 |
| chr4_4 | exon | 65003054 | 65003128 | 65003054 | ID=Msa0695460-mRNA-1:exon:18676;Parent=Msa0695460-mRNA-1 |
| chr4_4 | exon | 65003529 | 65003626 | 65003529 | ID=Msa0695460-mRNA-1:exon:18677;Parent=Msa0695460-mRNA-1 |
| chr4_4 | exon | 65003736 | 65003782 | 65003736 | ID=Msa0695460-mRNA-1:exon:18678;Parent=Msa0695460-mRNA-1 |
| chr4_4 | exon | 65003877 | 65003950 | 65003877 | ID=Msa0695460-mRNA-1:exon:18679;Parent=Msa0695460-mRNA-1 |
| chr4_4 | exon | 65004372 | 65004674 | 65004372 | ID=Msa0695460-mRNA-1:exon:18680;Parent=Msa0695460-mRNA-1 |
| chr4_4 | CDS | 65002661 | 65002960 | 65002661 | ID=Msa0695460-mRNA-1:cds;Parent=Msa0695460-mRNA-1 |
| chr4_4 | CDS | 65003054 | 65003128 | 65003054 | ID=Msa0695460-mRNA-1:cds;Parent=Msa0695460-mRNA-1 |
| chr4_4 | CDS | 65003529 | 65003626 | 65003529 | ID=Msa0695460-mRNA-1:cds;Parent=Msa0695460-mRNA-1 |
| chr4_4 | CDS | 65003736 | 65003782 | 65003736 | ID=Msa0695460-mRNA-1:cds;Parent=Msa0695460-mRNA-1 |
| chr4_4 | CDS | 65003877 | 65003950 | 65003877 | ID=Msa0695460-mRNA-1:cds;Parent=Msa0695460-mRNA-1 |
| chr4_4 | CDS | 65004372 | 65004674 | 65004372 | ID=Msa0695460-mRNA-1:cds;Parent=Msa0695460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
