AlfalfaGEDB | Msa0695460

M. sativa cultivar zhongmu-4 / Msa0695460

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010262 GO:0010344 GO:0010431 GO:0010468 GO:0010556 GO:0010557 GO:0010600 GO:0010601 GO:0010604 GO:0010628 GO:0010817 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032504 GO:0044085 GO:0045893 GO:0045935 GO:0046885 GO:0046886 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0080090 GO:0090354 GO:0090355 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0695460	KEH31034.1	83.165	297	27	2	1	297	1	274	4.53e-166	472

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0695460	sp\|Q1PFR7\|LEC2_ARATH	46.667	105	55	1	98	201	163	267	6.76e-24	102

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0695460	A0A072UMM3	83.165	297	27	2	1	297	1	274	2.16e-166	472

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TFs/TRs:

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Gene ID	Type	Classification
Msa0695460	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0695460	MtrunA17_Chr4g0047031	83.165	297	27	2	1	297	73	346	4.44e-170	474
Msa0695460	MtrunA17_Chr7g0251891	34.483	174	99	6	98	268	9	170	3.72e-20	86.7
Msa0695460	MtrunA17_Chr7g0237841	42.105	95	54	1	100	193	618	712	7.16e-19	87.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0695460	AT1G28300.1	46.667	105	55	1	98	201	163	267	6.88e-25	102
Msa0695460	AT3G24650.1	34.783	161	94	4	100	256	566	719	4.39e-19	87.8
Msa0695460	AT3G26790.1	35.294	119	75	2	98	214	84	202	5.30e-19	85.9

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Find 60 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGGTATGGTCCAATAT+AGG	0.437137	4_4:-65004552	None:intergenic
AAAATTCAAATAGAGGGAGG+TGG	0.561158	4_4:+65003516	Msa0695460:intron
AAACATGTGGAGTTCTTTCT+TGG	0.273984	4_4:-65002918	None:intergenic
AAACCATTACAAACTATGCA+TGG	0.506884	4_4:+65003887	Msa0695460:CDS
AACATGTGGAGTTCTTTCTT+GGG	0.423807	4_4:-65002917	None:intergenic
AACCATTACAAACTATGCAT+GGG	0.584630	4_4:+65003888	Msa0695460:CDS
AACTAGAATGTATATTCTGG+AGG	0.612428	4_4:+65003754	Msa0695460:CDS
AAGAAGCCCTCACCTTTGGG+AGG	0.679981	4_4:-65003119	None:intergenic
AAGAGCGATGTTAAGAACTA+TGG	0.459102	4_4:+65003087	Msa0695460:CDS
AATTCAGTCGACTAATAATT+TGG	0.175655	4_4:+65004473	Msa0695460:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGAGTAGTTTGAATTATGAA+AGG	-	chr4_4:65002736-65002755	None:intergenic	30.0%
ACAAAGCTTGAAATCTTTCA+TGG	+	chr4_4:65003420-65003439	Msa0695460:intron	30.0%
TTCTCCCAAAATTCAAATAG+AGG	+	chr4_4:65003509-65003528	Msa0695460:intron	30.0%
TCTCCCAAAATTCAAATAGA+GGG	+	chr4_4:65003510-65003529	Msa0695460:intron	30.0%
ATATATATTCTGGTCGTGAA+TGG	+	chr4_4:65003590-65003609	Msa0695460:CDS	30.0%
AGTTTATACCCATTAGAGTT+TGG	-	chr4_4:65003703-65003722	None:intergenic	30.0%
GTATAAACTGGAAATTCCAT+AGG	+	chr4_4:65003714-65003733	Msa0695460:intron	30.0%
TACCATTAATCCAATACCTA+TGG	-	chr4_4:65003733-65003752	None:intergenic	30.0%
AACTAGAATGTATATTCTGG+AGG	+	chr4_4:65003754-65003773	Msa0695460:CDS	30.0%
AAATTAGCAACACTAAGAAG+TGG	-	chr4_4:65003794-65003813	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	65002661	65004674	65002661	ID=Msa0695460;Name=Msa0695460
chr4_4	mRNA	65002661	65004674	65002661	ID=Msa0695460-mRNA-1;Parent=Msa0695460;Name=Msa0695460-mRNA-1;_AED=0.08;_eAED=0.14;_QI=0\|0\|0\|1\|1\|1\|6\|0\|298
chr4_4	exon	65002661	65002960	65002661	ID=Msa0695460-mRNA-1:exon:18675;Parent=Msa0695460-mRNA-1
chr4_4	exon	65003054	65003128	65003054	ID=Msa0695460-mRNA-1:exon:18676;Parent=Msa0695460-mRNA-1
chr4_4	exon	65003529	65003626	65003529	ID=Msa0695460-mRNA-1:exon:18677;Parent=Msa0695460-mRNA-1
chr4_4	exon	65003736	65003782	65003736	ID=Msa0695460-mRNA-1:exon:18678;Parent=Msa0695460-mRNA-1
chr4_4	exon	65003877	65003950	65003877	ID=Msa0695460-mRNA-1:exon:18679;Parent=Msa0695460-mRNA-1
chr4_4	exon	65004372	65004674	65004372	ID=Msa0695460-mRNA-1:exon:18680;Parent=Msa0695460-mRNA-1
chr4_4	CDS	65002661	65002960	65002661	ID=Msa0695460-mRNA-1:cds;Parent=Msa0695460-mRNA-1
chr4_4	CDS	65003054	65003128	65003054	ID=Msa0695460-mRNA-1:cds;Parent=Msa0695460-mRNA-1
chr4_4	CDS	65003529	65003626	65003529	ID=Msa0695460-mRNA-1:cds;Parent=Msa0695460-mRNA-1
chr4_4	CDS	65003736	65003782	65003736	ID=Msa0695460-mRNA-1:cds;Parent=Msa0695460-mRNA-1
chr4_4	CDS	65003877	65003950	65003877	ID=Msa0695460-mRNA-1:cds;Parent=Msa0695460-mRNA-1
chr4_4	CDS	65004372	65004674	65004372	ID=Msa0695460-mRNA-1:cds;Parent=Msa0695460-mRNA-1

Gene Sequence

>Msa0695460

ATGCATACAATTTCCTCGATGAATCAACCTCATGAACTTTATTCCTCTTCTCTGATGGGACAAAGTCACGTTCCTTTCATAATTCAAACTACTCCTCAACTTGGAGTTGAAAGGGAAGAGGATAAGAAAAAAATTGAAGCAAAGAGGTGCAAAATTGCTAGAGAACAAAGGAAACAAATACTAAAAAGAATCAGAAGTGAATCAGCTTCTAAGTTCACAGAAGAGACATCAAAGAGATCGTCTATTTATCGAGAGACCCAAGAAAGAACTCCACATGTTTTTTACAACCCAGATGGAAAGCGATTTGAAGAAATTCTAACAAAGAAGTTGAGAAAGAGCGATGTTAAGAACTATGGTCGCATTGTCCTCCCAAAGAGGGAGGTGGAAGAAAAGCTTCCAGCCCCTAGCAAAGAAGGGATTGAAGTCATTTTCAAGGATATATATTCTGGTCGTGAATGGAAATTGACACTCAAGTATTGGATTAATGGTAAAACTAGAATGTATATTCTGGAGGATACAGGGAATCTGTTAAACCATTACAAACTATGCATGGGAGATTATCTAGGCCTTTATGAGGACGAACTTAAAAATTTGTATGTGTGCACAAAAAAGGCTTGTGATCTATCGACACTGGATCTCTTACCTTGTGCAGACCAAGGCAAGGAAAAAGAACCATCAGACTTGGCCAACCAACAAATTCAGTCGACTAATAATTTGGAATTGAATCCACCAAACCAATCAGTCGCCCAAGAAACCAATAATACTGCAATGTCACCTATATTGGACCATACCGTTTTGGCAGATGGTAATGATGGTGGTGGTGATGATGACGATGAACAACAAAGCAGCTTGGACGAAATCTATGAGAGCCTTGACGATATTTTTGATGTTTATTAG

Protein sequence

>Msa0695460

MHTISSMNQPHELYSSSLMGQSHVPFIIQTTPQLGVEREEDKKKIEAKRCKIAREQRKQILKRIRSESASKFTEETSKRSSIYRETQERTPHVFYNPDGKRFEEILTKKLRKSDVKNYGRIVLPKREVEEKLPAPSKEGIEVIFKDIYSGREWKLTLKYWINGKTRMYILEDTGNLLNHYKLCMGDYLGLYEDELKNLYVCTKKACDLSTLDLLPCADQGKEKEPSDLANQQIQSTNNLELNPPNQSVAQETNNTAMSPILDHTVLADGNDGGGDDDDEQQSSLDEIYESLDDIFDVY*