Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0695740 | XP_013457042.1 | 98.496 | 133 | 2 | 0 | 1 | 133 | 1 | 133 | 3.70e-89 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0695740 | sp|O65426|LOL2_ARATH | 64.407 | 118 | 32 | 3 | 15 | 123 | 25 | 141 | 9.19e-45 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0695740 | A0A072UPT8 | 98.496 | 133 | 2 | 0 | 1 | 133 | 1 | 133 | 1.77e-89 | 265 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0695740 | TF | C2C2-LSD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0695740 | MtrunA17_Chr4g0047341 | 96.491 | 114 | 4 | 0 | 1 | 114 | 1 | 114 | 5.10e-78 | 227 |
| Msa0695740 | MtrunA17_Chr4g0054701 | 56.098 | 82 | 34 | 1 | 32 | 113 | 64 | 143 | 6.76e-27 | 97.8 |
| Msa0695740 | MtrunA17_Chr2g0303181 | 43.434 | 99 | 54 | 1 | 31 | 127 | 33 | 131 | 2.04e-25 | 94.7 |
| Msa0695740 | MtrunA17_Chr8g0381011 | 49.425 | 87 | 42 | 1 | 32 | 118 | 35 | 119 | 9.01e-25 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0695740 | AT4G21610.1 | 64.407 | 118 | 32 | 3 | 15 | 123 | 25 | 141 | 9.34e-46 | 146 |
| Msa0695740 | AT4G21610.2 | 62.617 | 107 | 30 | 3 | 15 | 112 | 25 | 130 | 1.68e-37 | 125 |
| Msa0695740 | AT1G32540.3 | 54.878 | 82 | 35 | 1 | 32 | 113 | 65 | 144 | 1.67e-26 | 97.4 |
| Msa0695740 | AT1G32540.2 | 54.878 | 82 | 35 | 1 | 32 | 113 | 65 | 144 | 1.67e-26 | 97.4 |
| Msa0695740 | AT1G32540.1 | 54.878 | 82 | 35 | 1 | 32 | 113 | 98 | 177 | 1.83e-26 | 98.2 |
| Msa0695740 | AT1G32540.5 | 57.143 | 77 | 31 | 1 | 32 | 108 | 65 | 139 | 8.60e-25 | 93.2 |
| Msa0695740 | AT4G20380.6 | 44.944 | 89 | 40 | 1 | 40 | 119 | 43 | 131 | 3.08e-22 | 87.0 |
| Msa0695740 | AT4G20380.3 | 44.944 | 89 | 40 | 1 | 40 | 119 | 43 | 131 | 3.08e-22 | 87.0 |
| Msa0695740 | AT4G20380.4 | 44.944 | 89 | 40 | 1 | 40 | 119 | 43 | 131 | 3.08e-22 | 87.0 |
| Msa0695740 | AT4G20380.1 | 44.944 | 89 | 40 | 1 | 40 | 119 | 43 | 131 | 3.08e-22 | 87.0 |
| Msa0695740 | AT4G20380.5 | 44.944 | 89 | 40 | 1 | 40 | 119 | 43 | 131 | 3.08e-22 | 87.0 |
| Msa0695740 | AT4G20380.2 | 44.944 | 89 | 40 | 1 | 40 | 119 | 48 | 136 | 3.48e-22 | 87.0 |
| Msa0695740 | AT4G20380.7 | 44.944 | 89 | 40 | 1 | 40 | 119 | 48 | 136 | 3.48e-22 | 87.0 |
| Msa0695740 | AT4G20380.9 | 45.122 | 82 | 36 | 1 | 40 | 112 | 43 | 124 | 5.08e-20 | 80.1 |
| Msa0695740 | AT4G20380.9 | 44.776 | 67 | 34 | 1 | 42 | 105 | 4 | 70 | 1.32e-13 | 63.5 |
| Msa0695740 | AT4G20380.8 | 35.652 | 115 | 39 | 1 | 40 | 119 | 43 | 157 | 5.59e-19 | 79.3 |
| Msa0695740 | AT4G20380.8 | 44.776 | 67 | 34 | 1 | 42 | 105 | 4 | 70 | 1.17e-13 | 65.1 |
| Msa0695740 | AT1G32540.4 | 44.872 | 78 | 42 | 1 | 31 | 107 | 23 | 100 | 1.05e-12 | 60.5 |
| Msa0695740 | AT1G32540.6 | 44.872 | 78 | 42 | 1 | 31 | 107 | 23 | 100 | 1.05e-12 | 60.5 |
| Msa0695740 | AT1G32540.7 | 45.833 | 72 | 38 | 1 | 37 | 107 | 62 | 133 | 3.44e-11 | 57.4 |
Find 82 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTCCATTGTCCTATTAAC+TGG | 0.181792 | 4_4:+65419465 | Msa0695740:three_prime_UTR |
| TAATGGAAAATAACTGTATT+TGG | 0.218198 | 4_4:+65419785 | Msa0695740:three_prime_UTR |
| CGTCGTCTTCTTTGTTTACT+AGG | 0.247921 | 4_4:-65416251 | None:intergenic |
| GGCCGTGGGCGTTGCGGTGG+GGG | 0.301669 | 4_4:-65416303 | None:intergenic |
| TGGCCGTGGGCGTTGCGGTG+GGG | 0.306898 | 4_4:-65416304 | None:intergenic |
| TGCCGGTTTGTGACAGAAAT+CGG | 0.319178 | 4_4:+65418906 | Msa0695740:CDS |
| AGGCCGCTAACAACCAGATT+TGG | 0.328376 | 4_4:-65419444 | None:intergenic |
| GGTGGCCGTGGGCGTTGCGG+TGG | 0.333387 | 4_4:-65416306 | None:intergenic |
| AGTGACGGTGGCGGTGGCCG+TGG | 0.335089 | 4_4:-65416318 | None:intergenic |
| ACAAGGATGACCCAGTTAAT+AGG | 0.337289 | 4_4:-65419476 | None:intergenic |
| GCATGAACATTTGACATGTT+TGG | 0.343047 | 4_4:-65416650 | None:intergenic |
| GTGGCCGTGGGCGTTGCGGT+GGG | 0.370495 | 4_4:-65416305 | None:intergenic |
| GCCTGTACTCTAGATTCTAA+TGG | 0.383973 | 4_4:+65419768 | Msa0695740:three_prime_UTR |
| TTCCTTCGTCACAGCTGATC+AGG | 0.397948 | 4_4:+65418806 | Msa0695740:intron |
| CTTCTTTGTTTACTAGGTGT+TGG | 0.400108 | 4_4:-65416245 | None:intergenic |
| AACTTGTCAATGTCAAGTTT+TGG | 0.403600 | 4_4:+65419568 | Msa0695740:three_prime_UTR |
| CATTCATAATTTGTCATACA+AGG | 0.412323 | 4_4:-65419493 | None:intergenic |
| GGCCGCTAACAACCAGATTT+GGG | 0.413926 | 4_4:-65419443 | None:intergenic |
| TCTTAAATTTGCAATATGTA+TGG | 0.415707 | 4_4:+65419544 | Msa0695740:three_prime_UTR |
| AAACCAACTCCTCCCAAATC+TGG | 0.417656 | 4_4:+65419431 | Msa0695740:CDS |
| GCCGGTTTGTGACAGAAATC+GGG | 0.420532 | 4_4:+65418907 | Msa0695740:CDS |
| CAAGGGACAATGAAAAGAAA+AGG | 0.428643 | 4_4:-65419637 | None:intergenic |
| TGATTATGATGAAATTCAAT+TGG | 0.428793 | 4_4:+65419696 | Msa0695740:three_prime_UTR |
| TTGTATGACAAATTATGAAT+GGG | 0.429313 | 4_4:+65419495 | Msa0695740:three_prime_UTR |
| CTAATACAATGTTGACTGTC+TGG | 0.430906 | 4_4:-65416675 | None:intergenic |
| CATACGGTGCTCCACAAGTT+AGG | 0.437213 | 4_4:+65418874 | Msa0695740:CDS |
| CAACCAGATTTGGGAGGAGT+TGG | 0.440236 | 4_4:-65419434 | None:intergenic |
| CTTGTATGACAAATTATGAA+TGG | 0.446097 | 4_4:+65419494 | Msa0695740:three_prime_UTR |
| GTGACGGTGGCGGTGGCCGT+GGG | 0.451108 | 4_4:-65416317 | None:intergenic |
| TCCATTAGAATCTAGAGTAC+AGG | 0.458527 | 4_4:-65419769 | None:intergenic |
| CCCCGATTTCTGTCACAAAC+CGG | 0.464843 | 4_4:-65418908 | None:intergenic |
| TTGTGCAGGCAGACAACAAA+CGG | 0.467604 | 4_4:+65419384 | Msa0695740:intron |
| GATGGGAGTGACGGTGGCGG+TGG | 0.475419 | 4_4:-65416324 | None:intergenic |
| ATAGGTTGCCAACCAGGTGG+CGG | 0.493264 | 4_4:-65416279 | None:intergenic |
| TGTAGTGTGTGAAGAAGTAA+CGG | 0.499517 | 4_4:+65416193 | Msa0695740:five_prime_UTR |
| GGCGGTGGCCGTGGGCGTTG+CGG | 0.501640 | 4_4:-65416309 | None:intergenic |
| ATACTATATGACAATATTCA+AGG | 0.505127 | 4_4:-65419655 | None:intergenic |
| ACAGTCAACATTGTATTAGA+AGG | 0.509196 | 4_4:+65416679 | Msa0695740:CDS |
| TAGGTTGCCAACCAGGTGGC+GGG | 0.511813 | 4_4:-65416278 | None:intergenic |
| CATTTGACATGTTTGGCACC+TGG | 0.517148 | 4_4:-65416643 | None:intergenic |
| CTAGAGTACAGGCGAATGGT+TGG | 0.520955 | 4_4:-65419758 | None:intergenic |
| CGCCTGCTTTCGTATCCACC+AGG | 0.522323 | 4_4:+65416625 | Msa0695740:CDS |
| AAGGGACAATGAAAAGAAAA+GGG | 0.522925 | 4_4:-65419636 | None:intergenic |
| AAGTTAGGTGTTCATCATGC+CGG | 0.527912 | 4_4:+65418889 | Msa0695740:CDS |
| CTAACTTGTGGAGCACCGTA+TGG | 0.535574 | 4_4:-65418873 | None:intergenic |
| CACCTGGTGGATACGAAAGC+AGG | 0.543193 | 4_4:-65416627 | None:intergenic |
| CCGGATGGGAGTGACGGTGG+CGG | 0.550715 | 4_4:-65416327 | None:intergenic |
| TACTATATGACAATATTCAA+GGG | 0.551540 | 4_4:-65419654 | None:intergenic |
| ACGACGGCCCGCCACCTGGT+TGG | 0.559468 | 4_4:+65416271 | Msa0695740:CDS |
| CCGCCACCGTCACTCCCATC+CGG | 0.560200 | 4_4:+65416327 | Msa0695740:CDS |
| CTCCCAAATCTGGTTGTTAG+CGG | 0.560296 | 4_4:+65419441 | Msa0695740:CDS |
| GACGACGACGGCCCGCCACC+TGG | 0.561082 | 4_4:+65416267 | Msa0695740:CDS |
| TGTCCATTGTCCTATTAACT+GGG | 0.565229 | 4_4:+65419466 | Msa0695740:three_prime_UTR |
| GGGATCACGGGAGGAACAGA+AGG | 0.576535 | 4_4:-65419616 | None:intergenic |
| CAGACAACAAACGGCCTCCA+TGG | 0.578390 | 4_4:+65419393 | Msa0695740:CDS |
| TAACTTGTGGAGCACCGTAT+GGG | 0.583052 | 4_4:-65418872 | None:intergenic |
| GTAGTGTGTGAAGAAGTAAC+GGG | 0.584958 | 4_4:+65416194 | Msa0695740:five_prime_UTR |
| ATGAAAAGAAAAGGGATCAC+GGG | 0.585104 | 4_4:-65419628 | None:intergenic |
| TTACTTTGTTGTACAGACCA+TGG | 0.588700 | 4_4:-65419410 | None:intergenic |
| AACTGACCGGATGGGAGTGA+CGG | 0.591272 | 4_4:-65416333 | None:intergenic |
| TTCGTCACAGCTGATCAGGT+TGG | 0.596338 | 4_4:+65418810 | Msa0695740:intron |
| TTTCATACGAACAATATGAT+GGG | 0.602363 | 4_4:-65419809 | None:intergenic |
| CAGGTTGGACAAGTTAAGTG+TGG | 0.602861 | 4_4:+65418825 | Msa0695740:CDS |
| TGTATGACAAATTATGAATG+GGG | 0.603273 | 4_4:+65419496 | Msa0695740:three_prime_UTR |
| CATGATGAACACCTAACTTG+TGG | 0.604697 | 4_4:-65418885 | None:intergenic |
| AATGAAAAGAAAAGGGATCA+CGG | 0.605042 | 4_4:-65419629 | None:intergenic |
| TAAATAGCAACTGACCGGAT+GGG | 0.614535 | 4_4:-65416341 | None:intergenic |
| GAATCTAGAGTACAGGCGAA+TGG | 0.615992 | 4_4:-65419762 | None:intergenic |
| AGGTTGGACAAGTTAAGTGT+GGG | 0.628125 | 4_4:+65418826 | Msa0695740:CDS |
| TGACCGGATGGGAGTGACGG+TGG | 0.636305 | 4_4:-65416330 | None:intergenic |
| TTGACATGTTTGGCACCTGG+TGG | 0.642814 | 4_4:-65416640 | None:intergenic |
| CAGTTAATAGGACAATGGAC+AGG | 0.647351 | 4_4:-65419464 | None:intergenic |
| GGAATAGGTTGCCAACCAGG+TGG | 0.649831 | 4_4:-65416282 | None:intergenic |
| GTATTGCTAATGTACCCATA+CGG | 0.650598 | 4_4:+65418858 | Msa0695740:CDS |
| TTGGAAAAGACAATTAATCA+CGG | 0.653985 | 4_4:-65419739 | None:intergenic |
| CCGGTTTGTGACAGAAATCG+GGG | 0.660382 | 4_4:+65418908 | Msa0695740:CDS |
| AAAAGAAAAGGGATCACGGG+AGG | 0.670556 | 4_4:-65419625 | None:intergenic |
| CGCTAACAACCAGATTTGGG+AGG | 0.672253 | 4_4:-65419440 | None:intergenic |
| TGACCCAGTTAATAGGACAA+TGG | 0.679589 | 4_4:-65419469 | None:intergenic |
| CTGGTGGATACGAAAGCAGG+CGG | 0.684251 | 4_4:-65416624 | None:intergenic |
| CTTTGTTGTACAGACCATGG+AGG | 0.723748 | 4_4:-65419407 | None:intergenic |
| GTAAACAAAGAAGACGACGA+CGG | 0.734106 | 4_4:+65416255 | Msa0695740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATTGATTTTATATTGT+TGG | + | chr4_4:65419314-65419333 | Msa0695740:intron | 10.0% |
| !! | AAAATGTCTAATTGAAAATT+TGG | - | chr4_4:65418627-65418646 | None:intergenic | 15.0% |
| !!! | TTTTGACTTAAAAAATTAGA+AGG | - | chr4_4:65418979-65418998 | None:intergenic | 15.0% |
| !!! | AAGCTAATAGCTTTAATATT+TGG | + | chr4_4:65416404-65416423 | Msa0695740:intron | 20.0% |
| !!! | AGCTAATAGCTTTAATATTT+GGG | + | chr4_4:65416405-65416424 | Msa0695740:intron | 20.0% |
| !!! | ATAATGACCAAATATTTTCT+TGG | + | chr4_4:65417572-65417591 | Msa0695740:intron | 20.0% |
| !! | TTCATATTTGAAAATTGTGT+CGG | - | chr4_4:65417731-65417750 | None:intergenic | 20.0% |
| !! | GAAAATTTCATTAACATAAC+AGG | - | chr4_4:65418229-65418248 | None:intergenic | 20.0% |
| !! | ATATTCAACATTGTATTAGA+AGG | + | chr4_4:65418295-65418314 | Msa0695740:intron | 20.0% |
| !! | TTCATAAACAATTACATGAT+TGG | + | chr4_4:65418417-65418436 | Msa0695740:intron | 20.0% |
| !! | AGTAACATTTCTAACAAAAA+AGG | + | chr4_4:65418518-65418537 | Msa0695740:intron | 20.0% |
| !!! | TTCAATTAGACATTTTAGTA+TGG | + | chr4_4:65418631-65418650 | Msa0695740:intron | 20.0% |
| !! | ACATATTACATATTGTTCTA+AGG | + | chr4_4:65419033-65419052 | Msa0695740:intron | 20.0% |
| !! | TTGTATGACAAATTATGAAT+GGG | + | chr4_4:65419495-65419514 | Msa0695740:three_prime_UTR | 20.0% |
| !! | TCTTAAATTTGCAATATGTA+TGG | + | chr4_4:65419544-65419563 | Msa0695740:three_prime_UTR | 20.0% |
| !! | TACTATATGACAATATTCAA+GGG | - | chr4_4:65419657-65419676 | None:intergenic | 20.0% |
| !! | ATACTATATGACAATATTCA+AGG | - | chr4_4:65419658-65419677 | None:intergenic | 20.0% |
| !! | TGATTATGATGAAATTCAAT+TGG | + | chr4_4:65419696-65419715 | Msa0695740:three_prime_UTR | 20.0% |
| !! | TAATGGAAAATAACTGTATT+TGG | + | chr4_4:65419785-65419804 | Msa0695740:three_prime_UTR | 20.0% |
| ! | GAGAAAAAAAGAGAAGTAAT+AGG | - | chr4_4:65416384-65416403 | None:intergenic | 25.0% |
| ! | CCATAAAAGGTTAAAACTAA+AGG | - | chr4_4:65416514-65416533 | None:intergenic | 25.0% |
| !!! | CCTTTAGTTTTAACCTTTTA+TGG | + | chr4_4:65416511-65416530 | Msa0695740:intron | 25.0% |
| !!! | AAATGAATTGGTTTTTTGTG+TGG | + | chr4_4:65416537-65416556 | Msa0695740:intron | 25.0% |
| !!! | TTTCTAAAAGCTAATTTTCG+AGG | - | chr4_4:65416792-65416811 | None:intergenic | 25.0% |
| !! | ATGAAATTTTCAATGCTCTA+CGG | + | chr4_4:65417053-65417072 | Msa0695740:intron | 25.0% |
| ! | ATCAAAAGTTGAAGATTACA+TGG | + | chr4_4:65417803-65417822 | Msa0695740:intron | 25.0% |
| ! | TCAAAAGTTGAAGATTACAT+GGG | + | chr4_4:65417804-65417823 | Msa0695740:intron | 25.0% |
| ! | AACTTAAAATGCAAGTTTCA+TGG | - | chr4_4:65418365-65418384 | None:intergenic | 25.0% |
| ! | TCATCAAATTCAAATGTGAT+TGG | - | chr4_4:65418589-65418608 | None:intergenic | 25.0% |
| ! | TACTTGTACAAAATATGACA+TGG | + | chr4_4:65418742-65418761 | Msa0695740:intron | 25.0% |
| ! | TACATAAATCAACTTGCAAT+TGG | - | chr4_4:65419014-65419033 | None:intergenic | 25.0% |
| ! | CTTTAAATTATCCAAGTGTA+GGG | + | chr4_4:65419204-65419223 | Msa0695740:intron | 25.0% |
| ! | TTTAAATTATCCAAGTGTAG+GGG | + | chr4_4:65419205-65419224 | Msa0695740:intron | 25.0% |
| !! | CATTCATAATTTGTCATACA+AGG | - | chr4_4:65419496-65419515 | None:intergenic | 25.0% |
| ! | CTTGTATGACAAATTATGAA+TGG | + | chr4_4:65419494-65419513 | Msa0695740:three_prime_UTR | 25.0% |
| ! | TGTATGACAAATTATGAATG+GGG | + | chr4_4:65419496-65419515 | Msa0695740:three_prime_UTR | 25.0% |
| ! | TTGGAAAAGACAATTAATCA+CGG | - | chr4_4:65419742-65419761 | None:intergenic | 25.0% |
| CTTCTTTCAAAAAACCACAA+GGG | - | chr4_4:65416165-65416184 | None:intergenic | 30.0% | |
| TCTTCTTTCAAAAAACCACA+AGG | - | chr4_4:65416166-65416185 | None:intergenic | 30.0% | |
| ATGAATAAATAGCAACTGAC+CGG | - | chr4_4:65416349-65416368 | None:intergenic | 30.0% | |
| !! | GGTTCAATTATTTCTGAAAG+AGG | + | chr4_4:65416426-65416445 | Msa0695740:intron | 30.0% |
| AACAAAAGCTGTGGAAAAAA+GGG | + | chr4_4:65416449-65416468 | Msa0695740:intron | 30.0% | |
| CAATTCATTTGAGCCATAAA+AGG | - | chr4_4:65416527-65416546 | None:intergenic | 30.0% | |
| ! | CTTTTATGGCTCAAATGAAT+TGG | + | chr4_4:65416525-65416544 | Msa0695740:intron | 30.0% |
| ACAGTCAACATTGTATTAGA+AGG | + | chr4_4:65416679-65416698 | Msa0695740:CDS | 30.0% | |
| AGACATGTTCATGAGAAAAA+AGG | - | chr4_4:65416713-65416732 | None:intergenic | 30.0% | |
| TAGTTGATCTACGAAGATTT+GGG | - | chr4_4:65416960-65416979 | None:intergenic | 30.0% | |
| TGCGATTCAGTTCAATAAAT+CGG | - | chr4_4:65417033-65417052 | None:intergenic | 30.0% | |
| ! | TGAAATTTTCAATGCTCTAC+GGG | + | chr4_4:65417054-65417073 | Msa0695740:intron | 30.0% |
| CTCAAGTTTATATCTCACAT+TGG | + | chr4_4:65417176-65417195 | Msa0695740:intron | 30.0% | |
| TTTGTCCAAAGTACAAACAA+GGG | - | chr4_4:65417248-65417267 | None:intergenic | 30.0% | |
| ATTTGTCCAAAGTACAAACA+AGG | - | chr4_4:65417249-65417268 | None:intergenic | 30.0% | |
| TGCAGCTTCAATTTCATTAT+GGG | - | chr4_4:65417842-65417861 | None:intergenic | 30.0% | |
| TTGCAGCTTCAATTTCATTA+TGG | - | chr4_4:65417843-65417862 | None:intergenic | 30.0% | |
| ! | AAACTATCCTCTTTTGTCAA+TGG | - | chr4_4:65418057-65418076 | None:intergenic | 30.0% |
| AGCTAACATGTATAAGATCA+TGG | + | chr4_4:65418080-65418099 | Msa0695740:intron | 30.0% | |
| CAGGAAATTTGATTACAATC+AGG | - | chr4_4:65418210-65418229 | None:intergenic | 30.0% | |
| !!! | GAAACTTGCATTTTAAGTTC+AGG | + | chr4_4:65418366-65418385 | Msa0695740:intron | 30.0% |
| !! | AGTTCAGGTTTTTATACATC+TGG | + | chr4_4:65418381-65418400 | Msa0695740:intron | 30.0% |
| AACTTCCTGGTCATTATAAA+AGG | + | chr4_4:65418541-65418560 | Msa0695740:intron | 30.0% | |
| ACTTCCTGGTCATTATAAAA+GGG | + | chr4_4:65418542-65418561 | Msa0695740:intron | 30.0% | |
| ! | ATTCAAATGTGATTGGTCAT+TGG | - | chr4_4:65418582-65418601 | None:intergenic | 30.0% |
| !!! | AGTCTAGTTTTCTCTTTGTA+CGG | + | chr4_4:65419141-65419160 | Msa0695740:intron | 30.0% |
| CCTACACTTGGATAATTTAA+AGG | - | chr4_4:65419206-65419225 | None:intergenic | 30.0% | |
| CCTTTAAATTATCCAAGTGT+AGG | + | chr4_4:65419203-65419222 | Msa0695740:intron | 30.0% | |
| TTAAATTATCCAAGTGTAGG+GGG | + | chr4_4:65419206-65419225 | Msa0695740:intron | 30.0% | |
| TCTTCAGATTGAATGAATAG+AGG | - | chr4_4:65419283-65419302 | None:intergenic | 30.0% | |
| TGAGGATATCAGTGTTTAAA+TGG | - | chr4_4:65419358-65419377 | None:intergenic | 30.0% | |
| ! | AACTTGTCAATGTCAAGTTT+TGG | + | chr4_4:65419568-65419587 | Msa0695740:three_prime_UTR | 30.0% |
| AATGAAAAGAAAAGGGATCA+CGG | - | chr4_4:65419632-65419651 | None:intergenic | 30.0% | |
| AAGGGACAATGAAAAGAAAA+GGG | - | chr4_4:65419639-65419658 | None:intergenic | 30.0% | |
| TGTAGTGTGTGAAGAAGTAA+CGG | + | chr4_4:65416193-65416212 | Msa0695740:five_prime_UTR | 35.0% | |
| ! | CTTCTTTGTTTACTAGGTGT+TGG | - | chr4_4:65416248-65416267 | None:intergenic | 35.0% |
| GAACAAAAGCTGTGGAAAAA+AGG | + | chr4_4:65416448-65416467 | Msa0695740:intron | 35.0% | |
| ACAAAAGCTGTGGAAAAAAG+GGG | + | chr4_4:65416450-65416469 | Msa0695740:intron | 35.0% | |
| TTTGATACAGTTGTGTGAAC+AGG | + | chr4_4:65416571-65416590 | Msa0695740:intron | 35.0% | |
| GCATGAACATTTGACATGTT+TGG | - | chr4_4:65416653-65416672 | None:intergenic | 35.0% | |
| ! | CTAATACAATGTTGACTGTC+TGG | - | chr4_4:65416678-65416697 | None:intergenic | 35.0% |
| TTTATTTGAGAATCTCCAGC+TGG | + | chr4_4:65416764-65416783 | Msa0695740:intron | 35.0% | |
| GTAGTTGATCTACGAAGATT+TGG | - | chr4_4:65416961-65416980 | None:intergenic | 35.0% | |
| CTACAACAGATGAACCATAT+CGG | + | chr4_4:65416977-65416996 | Msa0695740:intron | 35.0% | |
| TCAATAAATCGGGGATTGTT+GGG | - | chr4_4:65417022-65417041 | None:intergenic | 35.0% | |
| TTCAATAAATCGGGGATTGT+TGG | - | chr4_4:65417023-65417042 | None:intergenic | 35.0% | |
| CGATTCAGTTCAATAAATCG+GGG | - | chr4_4:65417031-65417050 | None:intergenic | 35.0% | |
| GCGATTCAGTTCAATAAATC+GGG | - | chr4_4:65417032-65417051 | None:intergenic | 35.0% | |
| AAAGAGTGGTTAAGTTCCAT+TGG | + | chr4_4:65417119-65417138 | Msa0695740:intron | 35.0% | |
| GTGAGATATAAACTTGAGAG+AGG | - | chr4_4:65417174-65417193 | None:intergenic | 35.0% | |
| TTGTCCAAAGTACAAACAAG+GGG | - | chr4_4:65417247-65417266 | None:intergenic | 35.0% | |
| GACAAATTTGCAGTTGAGAT+AGG | + | chr4_4:65417262-65417281 | Msa0695740:intron | 35.0% | |
| GCAAATGATTGGAATGACAA+TGG | - | chr4_4:65417374-65417393 | None:intergenic | 35.0% | |
| TGAAATAGTTGTTACCGTCT+AGG | - | chr4_4:65417417-65417436 | None:intergenic | 35.0% | |
| CTGGGAACCAAGAAAATATT+TGG | - | chr4_4:65417582-65417601 | None:intergenic | 35.0% | |
| GGTTATAGTTCTCATCTTCT+GGG | - | chr4_4:65417600-65417619 | None:intergenic | 35.0% | |
| TGGTTATAGTTCTCATCTTC+TGG | - | chr4_4:65417601-65417620 | None:intergenic | 35.0% | |
| AGAAGATGAGAACTATAACC+AGG | + | chr4_4:65417600-65417619 | Msa0695740:intron | 35.0% | |
| ACAGGCTACTCCTAAAATTA+GGG | - | chr4_4:65417641-65417660 | None:intergenic | 35.0% | |
| TACAGGCTACTCCTAAAATT+AGG | - | chr4_4:65417642-65417661 | None:intergenic | 35.0% | |
| CATTGTTTGGATATTGCTGT+GGG | - | chr4_4:65417696-65417715 | None:intergenic | 35.0% | |
| ACATTGTTTGGATATTGCTG+TGG | - | chr4_4:65417697-65417716 | None:intergenic | 35.0% | |
| AACAACTCGTTGATCATAGT+TGG | - | chr4_4:65417779-65417798 | None:intergenic | 35.0% | |
| AACTATGATCAACGAGTTGT+TGG | + | chr4_4:65417778-65417797 | Msa0695740:intron | 35.0% | |
| AAAGTTGAAGATTACATGGG+AGG | + | chr4_4:65417807-65417826 | Msa0695740:intron | 35.0% | |
| !! | TTGTATACTCAGCTTTAAGC+TGG | - | chr4_4:65417894-65417913 | None:intergenic | 35.0% |
| AATGATTGACCAAGAACTCA+TGG | + | chr4_4:65417996-65418015 | Msa0695740:intron | 35.0% | |
| TATCATCTTGATCTTCGTCT+TGG | - | chr4_4:65418028-65418047 | None:intergenic | 35.0% | |
| ACTACGCTCATGTAATTAGA+AGG | + | chr4_4:65418112-65418131 | Msa0695740:intron | 35.0% | |
| ACAATCAGGCGTTAAACAAA+AGG | - | chr4_4:65418196-65418215 | None:intergenic | 35.0% | |
| CTAACAAAAAAGGAACTTCC+TGG | + | chr4_4:65418528-65418547 | Msa0695740:intron | 35.0% | |
| ! | GTATCCCTTTTATAATGACC+AGG | - | chr4_4:65418549-65418568 | None:intergenic | 35.0% |
| ACATAGCGTATATGCATTCT+TGG | - | chr4_4:65418666-65418685 | None:intergenic | 35.0% | |
| ! | CATGGCATTATTCTTTTGCA+TGG | + | chr4_4:65418760-65418779 | Msa0695740:intron | 35.0% |
| GTATTGCTAATGTACCCATA+CGG | + | chr4_4:65418858-65418877 | Msa0695740:CDS | 35.0% | |
| AAGTTTGACACTTGATGTAG+CGG | + | chr4_4:65419073-65419092 | Msa0695740:intron | 35.0% | |
| TCAGATTGAATGAATAGAGG+CGG | - | chr4_4:65419280-65419299 | None:intergenic | 35.0% | |
| ! | TATCCTCATGATTTTTGTGC+AGG | + | chr4_4:65419370-65419389 | Msa0695740:intron | 35.0% |
| ! | TTACTTTGTTGTACAGACCA+TGG | - | chr4_4:65419413-65419432 | None:intergenic | 35.0% |
| TGTCCATTGTCCTATTAACT+GGG | + | chr4_4:65419466-65419485 | Msa0695740:three_prime_UTR | 35.0% | |
| ATGAAAAGAAAAGGGATCAC+GGG | - | chr4_4:65419631-65419650 | None:intergenic | 35.0% | |
| CAAGGGACAATGAAAAGAAA+AGG | - | chr4_4:65419640-65419659 | None:intergenic | 35.0% | |
| ! | TCCATTAGAATCTAGAGTAC+AGG | - | chr4_4:65419772-65419791 | None:intergenic | 35.0% |
| !! | TGTTTTTACCTAGTCCCTTG+TGG | + | chr4_4:65416148-65416167 | Msa0695740:five_prime_UTR | 40.0% |
| TCAAAAAACCACAAGGGACT+AGG | - | chr4_4:65416159-65416178 | None:intergenic | 40.0% | |
| GTAGTGTGTGAAGAAGTAAC+GGG | + | chr4_4:65416194-65416213 | Msa0695740:five_prime_UTR | 40.0% | |
| ! | CGTCGTCTTCTTTGTTTACT+AGG | - | chr4_4:65416254-65416273 | None:intergenic | 40.0% |
| GTAAACAAAGAAGACGACGA+CGG | + | chr4_4:65416255-65416274 | Msa0695740:CDS | 40.0% | |
| TAAATAGCAACTGACCGGAT+GGG | - | chr4_4:65416344-65416363 | None:intergenic | 40.0% | |
| ATAAATAGCAACTGACCGGA+TGG | - | chr4_4:65416345-65416364 | None:intergenic | 40.0% | |
| TGAAAGAGGAACAAAAGCTG+TGG | + | chr4_4:65416440-65416459 | Msa0695740:intron | 40.0% | |
| TAAAGGAAGCTTCAAGCTTC+AGG | - | chr4_4:65416497-65416516 | None:intergenic | 40.0% | |
| ! | GTGAACAGGTTTTGCTCAAA+TGG | + | chr4_4:65416585-65416604 | Msa0695740:intron | 40.0% |
| ! | GGTTTTGCTCAAATGGTTTG+TGG | + | chr4_4:65416592-65416611 | Msa0695740:intron | 40.0% |
| TATAACCCTGATACCATGTC+AGG | + | chr4_4:65416848-65416867 | Msa0695740:intron | 40.0% | |
| ATCTACGAAGATTTGGGTAG+TGG | - | chr4_4:65416954-65416973 | None:intergenic | 40.0% | |
| GAATGGTGAATGATCCGATA+TGG | - | chr4_4:65416994-65417013 | None:intergenic | 40.0% | |
| ! | ACATAAAGTGGAGGGTGTAA+AGG | - | chr4_4:65417081-65417100 | None:intergenic | 40.0% |
| CCACTTTGACATAAAGTGGA+GGG | - | chr4_4:65417089-65417108 | None:intergenic | 40.0% | |
| CCTCCACTTTATGTCAAAGT+GGG | + | chr4_4:65417087-65417106 | Msa0695740:intron | 40.0% | |
| TGTCCCACTTTGACATAAAG+TGG | - | chr4_4:65417093-65417112 | None:intergenic | 40.0% | |
| !! | GTGGGACATTTTGAAAAGAG+TGG | + | chr4_4:65417105-65417124 | Msa0695740:intron | 40.0% |
| TGTTTATGCCTCAAACAGAG+AGG | + | chr4_4:65417207-65417226 | Msa0695740:intron | 40.0% | |
| AATAGTTGTTACCGTCTAGG+TGG | - | chr4_4:65417414-65417433 | None:intergenic | 40.0% | |
| !! | TCATCAGCCATTTGCTGTTT+GGG | - | chr4_4:65417501-65417520 | None:intergenic | 40.0% |
| !! | TTCATCAGCCATTTGCTGTT+TGG | - | chr4_4:65417502-65417521 | None:intergenic | 40.0% |
| ACCTATTCCAATGACGTTCT+AGG | + | chr4_4:65417523-65417542 | Msa0695740:intron | 40.0% | |
| TCCTAGAACGTCATTGGAAT+AGG | - | chr4_4:65417527-65417546 | None:intergenic | 40.0% | |
| !! | ATTCCAATGACGTTCTAGGA+CGG | + | chr4_4:65417527-65417546 | Msa0695740:intron | 40.0% |
| ! | ATCAACCTGGCCCTAATTTT+AGG | + | chr4_4:65417628-65417647 | Msa0695740:intron | 40.0% |
| ! | TTGAAAATTGTGTCGGCGTT+AGG | - | chr4_4:65417724-65417743 | None:intergenic | 40.0% |
| ATAGTTGGAGTAGAACTGAG+CGG | - | chr4_4:65417764-65417783 | None:intergenic | 40.0% | |
| ! | TATCCTCTTTTGTCAATGGC+GGG | - | chr4_4:65418053-65418072 | None:intergenic | 40.0% |
| ! | CTATCCTCTTTTGTCAATGG+CGG | - | chr4_4:65418054-65418073 | None:intergenic | 40.0% |
| AGCACACAACTACCAATAAC+AGG | - | chr4_4:65418452-65418471 | None:intergenic | 40.0% | |
| AGGTTGGACAAGTTAAGTGT+GGG | + | chr4_4:65418826-65418845 | Msa0695740:CDS | 40.0% | |
| CATGATGAACACCTAACTTG+TGG | - | chr4_4:65418888-65418907 | None:intergenic | 40.0% | |
| AAGTTAGGTGTTCATCATGC+CGG | + | chr4_4:65418889-65418908 | Msa0695740:CDS | 40.0% | |
| CAGATTGAATGAATAGAGGC+GGG | - | chr4_4:65419279-65419298 | None:intergenic | 40.0% | |
| CAGTTAATAGGACAATGGAC+AGG | - | chr4_4:65419467-65419486 | None:intergenic | 40.0% | |
| CTGTCCATTGTCCTATTAAC+TGG | + | chr4_4:65419465-65419484 | Msa0695740:three_prime_UTR | 40.0% | |
| TGACCCAGTTAATAGGACAA+TGG | - | chr4_4:65419472-65419491 | None:intergenic | 40.0% | |
| ACAAGGATGACCCAGTTAAT+AGG | - | chr4_4:65419479-65419498 | None:intergenic | 40.0% | |
| GCCTGTACTCTAGATTCTAA+TGG | + | chr4_4:65419768-65419787 | Msa0695740:three_prime_UTR | 40.0% | |
| AGCTGTGGAAAAAAGGGGTT+TGG | + | chr4_4:65416455-65416474 | Msa0695740:intron | 45.0% | |
| CATTTGACATGTTTGGCACC+TGG | - | chr4_4:65416646-65416665 | None:intergenic | 45.0% | |
| !! | CTAATTTTCGAGGAACCAGC+TGG | - | chr4_4:65416782-65416801 | None:intergenic | 45.0% |
| ATCTTCATCCAGTCCTGACA+TGG | - | chr4_4:65416864-65416883 | None:intergenic | 45.0% | |
| ! | TAACTGGGGTGTTACCTTCA+GGG | - | chr4_4:65416892-65416911 | None:intergenic | 45.0% |
| ! | ATAACTGGGGTGTTACCTTC+AGG | - | chr4_4:65416893-65416912 | None:intergenic | 45.0% |
| ! | TGGCTGGAGCTTTGATAACT+GGG | - | chr4_4:65416907-65416926 | None:intergenic | 45.0% |
| GTAGTGGTCCTTGAAAAGGA+CGG | - | chr4_4:65416938-65416957 | None:intergenic | 45.0% | |
| ! | TTGGGTAGTGGTCCTTGAAA+AGG | - | chr4_4:65416942-65416961 | None:intergenic | 45.0% |
| ATCGGATCATTCACCATTCG+TGG | + | chr4_4:65416995-65417014 | Msa0695740:intron | 45.0% | |
| CCCTCCACTTTATGTCAAAG+TGG | + | chr4_4:65417086-65417105 | Msa0695740:intron | 45.0% | |
| CCCACTTTGACATAAAGTGG+AGG | - | chr4_4:65417090-65417109 | None:intergenic | 45.0% | |
| ! | GCTTCCCCTTGTTTGTACTT+TGG | + | chr4_4:65417240-65417259 | Msa0695740:intron | 45.0% |
| !! | CTTGAGAGCATCGAGCAATA+GGG | - | chr4_4:65417320-65417339 | None:intergenic | 45.0% |
| AATGGGGTGGTGCAAATGAT+TGG | - | chr4_4:65417385-65417404 | None:intergenic | 45.0% | |
| ! | TCATTTGCACCACCCCATTT+TGG | + | chr4_4:65417386-65417405 | Msa0695740:intron | 45.0% |
| GTCTAGGTGGTTCCAAAATG+GGG | - | chr4_4:65417401-65417420 | None:intergenic | 45.0% | |
| CGTCTAGGTGGTTCCAAAAT+GGG | - | chr4_4:65417402-65417421 | None:intergenic | 45.0% | |
| !!! | CCATTTTGGAACCACCTAGA+CGG | + | chr4_4:65417400-65417419 | Msa0695740:intron | 45.0% |
| CGCTGAAGAGTTCAGTATTG+AGG | - | chr4_4:65417456-65417475 | None:intergenic | 45.0% | |
| TGACTGACCCAAACAGCAAA+TGG | + | chr4_4:65417491-65417510 | Msa0695740:intron | 45.0% | |
| TGCCAGTCAAGTAGCCAAAA+TGG | - | chr4_4:65417553-65417572 | None:intergenic | 45.0% | |
| TAACCAGGATGACATCAACC+TGG | + | chr4_4:65417615-65417634 | Msa0695740:intron | 45.0% | |
| CTACTCCTAAAATTAGGGCC+AGG | - | chr4_4:65417636-65417655 | None:intergenic | 45.0% | |
| TGGGATATCATCATCGCTTG+GGG | - | chr4_4:65417677-65417696 | None:intergenic | 45.0% | |
| GTGGGATATCATCATCGCTT+GGG | - | chr4_4:65417678-65417697 | None:intergenic | 45.0% | |
| TGTGGGATATCATCATCGCT+TGG | - | chr4_4:65417679-65417698 | None:intergenic | 45.0% | |
| TAGTTGGAGTAGAACTGAGC+GGG | - | chr4_4:65417763-65417782 | None:intergenic | 45.0% | |
| TTGGTCAATCATTTCGCCAG+TGG | - | chr4_4:65417989-65418008 | None:intergenic | 45.0% | |
| ACAGCTTATGAGTTGCAGTG+CGG | - | chr4_4:65418152-65418171 | None:intergenic | 45.0% | |
| TGGACGAACAGTCCTGTTAT+TGG | + | chr4_4:65418437-65418456 | Msa0695740:intron | 45.0% | |
| ! | ATTGGTAGTTGTGTGCTTGC+TGG | + | chr4_4:65418455-65418474 | Msa0695740:intron | 45.0% |
| GCGTATATGCATTCTTGGAG+AGG | - | chr4_4:65418661-65418680 | None:intergenic | 45.0% | |
| ! | CAGGTTGGACAAGTTAAGTG+TGG | + | chr4_4:65418825-65418844 | Msa0695740:CDS | 45.0% |
| !! | TAACTTGTGGAGCACCGTAT+GGG | - | chr4_4:65418875-65418894 | None:intergenic | 45.0% |
| !! | TGCCGGTTTGTGACAGAAAT+CGG | + | chr4_4:65418906-65418925 | Msa0695740:CDS | 45.0% |
| ATCATCAATCCCCCTACACT+TGG | - | chr4_4:65419218-65419237 | None:intergenic | 45.0% | |
| TTGAATGAATAGAGGCGGGT+GGG | - | chr4_4:65419275-65419294 | None:intergenic | 45.0% | |
| ATTGAATGAATAGAGGCGGG+TGG | - | chr4_4:65419276-65419295 | None:intergenic | 45.0% | |
| CTGCCTGCACAAAAATCATG+AGG | - | chr4_4:65419376-65419395 | None:intergenic | 45.0% | |
| TTGTGCAGGCAGACAACAAA+CGG | + | chr4_4:65419384-65419403 | Msa0695740:intron | 45.0% | |
| ! | CTTTGTTGTACAGACCATGG+AGG | - | chr4_4:65419410-65419429 | None:intergenic | 45.0% |
| AAACCAACTCCTCCCAAATC+TGG | + | chr4_4:65419431-65419450 | Msa0695740:CDS | 45.0% | |
| CTCCCAAATCTGGTTGTTAG+CGG | + | chr4_4:65419441-65419460 | Msa0695740:CDS | 45.0% | |
| AAAAGAAAAGGGATCACGGG+AGG | - | chr4_4:65419628-65419647 | None:intergenic | 45.0% | |
| ! | GAATCTAGAGTACAGGCGAA+TGG | - | chr4_4:65419765-65419784 | None:intergenic | 45.0% |
| TTGACATGTTTGGCACCTGG+TGG | - | chr4_4:65416643-65416662 | None:intergenic | 50.0% | |
| CCAGTCCTGACATGGTATCA+GGG | - | chr4_4:65416856-65416875 | None:intergenic | 50.0% | |
| TCCAGTCCTGACATGGTATC+AGG | - | chr4_4:65416857-65416876 | None:intergenic | 50.0% | |
| GATGAAGATACGACCCCTGA+AGG | + | chr4_4:65416875-65416894 | Msa0695740:intron | 50.0% | |
| ! | AACTGGGGTGTTACCTTCAG+GGG | - | chr4_4:65416891-65416910 | None:intergenic | 50.0% |
| ! | GGCTGGAGCTTTGATAACTG+GGG | - | chr4_4:65416906-65416925 | None:intergenic | 50.0% |
| ! | CTGGCTGGAGCTTTGATAAC+TGG | - | chr4_4:65416908-65416927 | None:intergenic | 50.0% |
| GTATTTAGCCTCCTCAGCAG+TGG | - | chr4_4:65417152-65417171 | None:intergenic | 50.0% | |
| !! | GCTTGAGAGCATCGAGCAAT+AGG | - | chr4_4:65417321-65417340 | None:intergenic | 50.0% |
| GGAATGACAATGGAGCTGTC+AGG | - | chr4_4:65417364-65417383 | None:intergenic | 50.0% | |
| TAGGTGGTTCCAAAATGGGG+TGG | - | chr4_4:65417398-65417417 | None:intergenic | 50.0% | |
| CCGTCTAGGTGGTTCCAAAA+TGG | - | chr4_4:65417403-65417422 | None:intergenic | 50.0% | |
| !!! | ACGTTCTAGGACGGCCATTT+TGG | + | chr4_4:65417536-65417555 | Msa0695740:intron | 50.0% |
| !!! | GGCCATTTTGGCTACTTGAC+TGG | + | chr4_4:65417548-65417567 | Msa0695740:intron | 50.0% |
| TATCATCATCGCTTGGGGCT+AGG | - | chr4_4:65417672-65417691 | None:intergenic | 50.0% | |
| GCGTTAGGCACGACATTGTT+TGG | - | chr4_4:65417709-65417728 | None:intergenic | 50.0% | |
| CAACTCAAGACCTGCTGCAA+TGG | + | chr4_4:65417921-65417940 | Msa0695740:intron | 50.0% | |
| TGGCATGAGCCATGAGTTCT+TGG | - | chr4_4:65418008-65418027 | None:intergenic | 50.0% | |
| AGACCCGCCATTGACAAAAG+AGG | + | chr4_4:65418047-65418066 | Msa0695740:intron | 50.0% | |
| CAGCTTATGAGTTGCAGTGC+GGG | - | chr4_4:65418151-65418170 | None:intergenic | 50.0% | |
| TTCCTTCGTCACAGCTGATC+AGG | + | chr4_4:65418806-65418825 | Msa0695740:intron | 50.0% | |
| AACCTGATCAGCTGTGACGA+AGG | - | chr4_4:65418811-65418830 | None:intergenic | 50.0% | |
| TTCGTCACAGCTGATCAGGT+TGG | + | chr4_4:65418810-65418829 | Msa0695740:intron | 50.0% | |
| !! | CTAACTTGTGGAGCACCGTA+TGG | - | chr4_4:65418876-65418895 | None:intergenic | 50.0% |
| CATACGGTGCTCCACAAGTT+AGG | + | chr4_4:65418874-65418893 | Msa0695740:CDS | 50.0% | |
| !! | GCCGGTTTGTGACAGAAATC+GGG | + | chr4_4:65418907-65418926 | Msa0695740:CDS | 50.0% |
| CCCCGATTTCTGTCACAAAC+CGG | - | chr4_4:65418911-65418930 | None:intergenic | 50.0% | |
| ! | CCGGTTTGTGACAGAAATCG+GGG | + | chr4_4:65418908-65418927 | Msa0695740:CDS | 50.0% |
| CAACCAGATTTGGGAGGAGT+TGG | - | chr4_4:65419437-65419456 | None:intergenic | 50.0% | |
| CGCTAACAACCAGATTTGGG+AGG | - | chr4_4:65419443-65419462 | None:intergenic | 50.0% | |
| GGCCGCTAACAACCAGATTT+GGG | - | chr4_4:65419446-65419465 | None:intergenic | 50.0% | |
| AGGCCGCTAACAACCAGATT+TGG | - | chr4_4:65419447-65419466 | None:intergenic | 50.0% | |
| CTAGAGTACAGGCGAATGGT+TGG | - | chr4_4:65419761-65419780 | None:intergenic | 50.0% | |
| ATAGGTTGCCAACCAGGTGG+CGG | - | chr4_4:65416282-65416301 | None:intergenic | 55.0% | |
| GGAATAGGTTGCCAACCAGG+TGG | - | chr4_4:65416285-65416304 | None:intergenic | 55.0% | |
| AACTGACCGGATGGGAGTGA+CGG | - | chr4_4:65416336-65416355 | None:intergenic | 55.0% | |
| ! | CTGGTGGATACGAAAGCAGG+CGG | - | chr4_4:65416627-65416646 | None:intergenic | 55.0% |
| ! | CACCTGGTGGATACGAAAGC+AGG | - | chr4_4:65416630-65416649 | None:intergenic | 55.0% |
| CCCTGATACCATGTCAGGAC+TGG | + | chr4_4:65416853-65416872 | Msa0695740:intron | 55.0% | |
| TGAAAAGGACGGAGGTCTGC+TGG | - | chr4_4:65416927-65416946 | None:intergenic | 55.0% | |
| ! | GCAGACCTCCGTCCTTTTCA+AGG | + | chr4_4:65416927-65416946 | Msa0695740:intron | 55.0% |
| GTGGTCCTTGAAAAGGACGG+AGG | - | chr4_4:65416935-65416954 | None:intergenic | 55.0% | |
| GGGATTGTTGGGTCCACGAA+TGG | - | chr4_4:65417011-65417030 | None:intergenic | 55.0% | |
| ! | CAGCAGTGGTGGAGTTCCAA+TGG | - | chr4_4:65417138-65417157 | None:intergenic | 55.0% |
| TTGGAACTCCACCACTGCTG+AGG | + | chr4_4:65417138-65417157 | Msa0695740:intron | 55.0% | |
| TTTAGCCTCCTCAGCAGTGG+TGG | - | chr4_4:65417149-65417168 | None:intergenic | 55.0% | |
| CCTGCAAGCCTCTCTGTTTG+AGG | - | chr4_4:65417218-65417237 | None:intergenic | 55.0% | |
| CCTCAAACAGAGAGGCTTGC+AGG | + | chr4_4:65417215-65417234 | Msa0695740:intron | 55.0% | |
| !! | GAGCATCGAGCAATAGGGTG+AGG | - | chr4_4:65417315-65417334 | None:intergenic | 55.0% |
| TCGATGCTCTCAAGCCGACT+CGG | + | chr4_4:65417326-65417345 | Msa0695740:intron | 55.0% | |
| ! | ACTCTTCAGCGCACTGATGC+AGG | + | chr4_4:65417465-65417484 | Msa0695740:intron | 55.0% |
| TGGCCGTCCTAGAACGTCAT+TGG | - | chr4_4:65417533-65417552 | None:intergenic | 55.0% | |
| TCGGCTGTATCCATTGCAGC+AGG | - | chr4_4:65417934-65417953 | None:intergenic | 55.0% | |
| GCTGCAATGGATACAGCCGA+AGG | + | chr4_4:65417934-65417953 | Msa0695740:intron | 55.0% | |
| ATGGATACAGCCGAAGGCTC+AGG | + | chr4_4:65417940-65417959 | Msa0695740:intron | 55.0% | |
| AACGGCTTGTCCTGAGCCTT+CGG | - | chr4_4:65417953-65417972 | None:intergenic | 55.0% | |
| AGTGGCGCGAAATGGGACAA+CGG | - | chr4_4:65417971-65417990 | None:intergenic | 55.0% | |
| TTTCGCCAGTGGCGCGAAAT+GGG | - | chr4_4:65417978-65417997 | None:intergenic | 55.0% | |
| ATTTCGCCAGTGGCGCGAAA+TGG | - | chr4_4:65417979-65417998 | None:intergenic | 55.0% | |
| CAGACAACAAACGGCCTCCA+TGG | + | chr4_4:65419393-65419412 | Msa0695740:CDS | 55.0% | |
| TAGGTTGCCAACCAGGTGGC+GGG | - | chr4_4:65416281-65416300 | None:intergenic | 60.0% | |
| GGGGGAATAGGTTGCCAACC+AGG | - | chr4_4:65416288-65416307 | None:intergenic | 60.0% | |
| CGCCTGCTTTCGTATCCACC+AGG | + | chr4_4:65416625-65416644 | Msa0695740:CDS | 60.0% | |
| GAACTCCACCACTGCTGAGG+AGG | + | chr4_4:65417141-65417160 | Msa0695740:intron | 60.0% | |
| ! | CGATGCTCTCAAGCCGACTC+GGG | + | chr4_4:65417327-65417346 | Msa0695740:intron | 60.0% |
| !! | GGGCCAGGTTGATGTCATCC+TGG | - | chr4_4:65417621-65417640 | None:intergenic | 60.0% |
| TGGGGCTAGGTGTGGAGTAC+AGG | - | chr4_4:65417659-65417678 | None:intergenic | 60.0% | |
| TCATCGCTTGGGGCTAGGTG+TGG | - | chr4_4:65417667-65417686 | None:intergenic | 60.0% | |
| GTTGTCCCATTTCGCGCCAC+TGG | + | chr4_4:65417970-65417989 | Msa0695740:intron | 60.0% | |
| GGGATCACGGGAGGAACAGA+AGG | - | chr4_4:65419619-65419638 | None:intergenic | 60.0% | |
| TGACCGGATGGGAGTGACGG+TGG | - | chr4_4:65416333-65416352 | None:intergenic | 65.0% | |
| AAGGACGGAGGTCTGCTGGC+TGG | - | chr4_4:65416923-65416942 | None:intergenic | 65.0% | |
| !! | CTCAAGCCGACTCGGGTCAC+TGG | + | chr4_4:65417334-65417353 | Msa0695740:intron | 65.0% |
| GGCGTTCCAGTGACCCGAGT+CGG | - | chr4_4:65417343-65417362 | None:intergenic | 65.0% | |
| ! | GGGCGTTGCGGTGGGGGAAT+AGG | - | chr4_4:65416300-65416319 | None:intergenic | 70.0% |
| TTCCCCCACCGCAACGCCCA+CGG | + | chr4_4:65416301-65416320 | Msa0695740:CDS | 70.0% | |
| ! | GATGGGAGTGACGGTGGCGG+TGG | - | chr4_4:65416327-65416346 | None:intergenic | 70.0% |
| CCGGATGGGAGTGACGGTGG+CGG | - | chr4_4:65416330-65416349 | None:intergenic | 70.0% | |
| CCGCCACCGTCACTCCCATC+CGG | + | chr4_4:65416327-65416346 | Msa0695740:CDS | 70.0% | |
| ACGACGGCCCGCCACCTGGT+TGG | + | chr4_4:65416271-65416290 | Msa0695740:CDS | 75.0% | |
| ! | TGGCCGTGGGCGTTGCGGTG+GGG | - | chr4_4:65416307-65416326 | None:intergenic | 75.0% |
| ! | GTGGCCGTGGGCGTTGCGGT+GGG | - | chr4_4:65416308-65416327 | None:intergenic | 75.0% |
| ! | GTGACGGTGGCGGTGGCCGT+GGG | - | chr4_4:65416320-65416339 | None:intergenic | 75.0% |
| ! | AGTGACGGTGGCGGTGGCCG+TGG | - | chr4_4:65416321-65416340 | None:intergenic | 75.0% |
| ! | GACGACGACGGCCCGCCACC+TGG | + | chr4_4:65416267-65416286 | Msa0695740:CDS | 80.0% |
| !! | GGCCGTGGGCGTTGCGGTGG+GGG | - | chr4_4:65416306-65416325 | None:intergenic | 80.0% |
| !! | GGTGGCCGTGGGCGTTGCGG+TGG | - | chr4_4:65416309-65416328 | None:intergenic | 80.0% |
| !! | GGCGGTGGCCGTGGGCGTTG+CGG | - | chr4_4:65416312-65416331 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 65416143 | 65419816 | 65416143 | ID=Msa0695740;Name=Msa0695740 |
| chr4_4 | mRNA | 65416143 | 65419816 | 65416143 | ID=Msa0695740-mRNA-1;Parent=Msa0695740;Name=Msa0695740-mRNA-1;_AED=0.15;_eAED=0.15;_QI=91|1|1|1|0.66|0.75|4|356|133 |
| chr4_4 | exon | 65416143 | 65416348 | 65416143 | ID=Msa0695740-mRNA-1:exon:18855;Parent=Msa0695740-mRNA-1 |
| chr4_4 | exon | 65416593 | 65416700 | 65416593 | ID=Msa0695740-mRNA-1:exon:18856;Parent=Msa0695740-mRNA-1 |
| chr4_4 | exon | 65418820 | 65418929 | 65418820 | ID=Msa0695740-mRNA-1:exon:18857;Parent=Msa0695740-mRNA-1 |
| chr4_4 | exon | 65419392 | 65419816 | 65419392 | ID=Msa0695740-mRNA-1:exon:18858;Parent=Msa0695740-mRNA-1 |
| chr4_4 | five_prime_UTR | 65416143 | 65416233 | 65416143 | ID=Msa0695740-mRNA-1:five_prime_utr;Parent=Msa0695740-mRNA-1 |
| chr4_4 | CDS | 65416234 | 65416348 | 65416234 | ID=Msa0695740-mRNA-1:cds;Parent=Msa0695740-mRNA-1 |
| chr4_4 | CDS | 65416593 | 65416700 | 65416593 | ID=Msa0695740-mRNA-1:cds;Parent=Msa0695740-mRNA-1 |
| chr4_4 | CDS | 65418820 | 65418929 | 65418820 | ID=Msa0695740-mRNA-1:cds;Parent=Msa0695740-mRNA-1 |
| chr4_4 | CDS | 65419392 | 65419460 | 65419392 | ID=Msa0695740-mRNA-1:cds;Parent=Msa0695740-mRNA-1 |
| chr4_4 | three_prime_UTR | 65419461 | 65419816 | 65419461 | ID=Msa0695740-mRNA-1:three_prime_utr;Parent=Msa0695740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
