AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0696050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0696050 MtrunA17_Chr4g0047931 95.512 557 25 0 1 557 1 557 0.0 1070
Msa0696050 MtrunA17_Chr2g0281431 51.667 480 205 11 95 556 367 837 1.69e-121 377
Msa0696050 MtrunA17_Chr2g0281431 61.455 275 96 5 9 278 4 273 2.13e-93 303
Msa0696050 MtrunA17_Chr2g0281431 56.383 188 73 4 95 278 183 365 4.01e-45 170
Msa0696050 MtrunA17_Chr2g0281431 54.787 188 76 4 95 278 275 457 1.30e-44 169
Msa0696050 MtrunA17_Chr2g0308521 34.857 175 79 5 9 148 21 195 2.99e-17 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0696050 AT1G61215.1 60.494 162 56 5 9 166 14 171 1.64e-49 178
Msa0696050 AT1G61215.1 36.795 337 170 13 201 514 111 427 4.04e-34 135
Msa0696050 AT1G61215.2 36.795 337 170 13 201 514 92 408 7.80e-34 134
Msa0696050 AT1G61215.2 55.738 122 47 4 49 166 34 152 6.73e-27 114
Msa0696050 AT2G42150.1 31.148 244 133 6 8 239 15 235 8.38e-18 87.4
Msa0696050 AT3G60110.1 30.625 160 84 2 4 143 47 199 2.05e-15 79.7
Msa0696050 AT2G44430.1 39.655 116 47 3 9 101 50 165 3.08e-14 76.3
Msa0696050 AT3G57980.1 37.815 119 55 2 8 108 15 132 8.15e-14 74.7
Msa0696050 AT3G57980.2 37.815 119 55 2 8 108 15 132 8.61e-14 74.7

Find 152 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATCTCGCCTGGTGTTTC+AGG 0.123019 4_4:+65836630 Msa0696050:CDS
GAGATTACGCCTGGTGTTTC+AGG 0.146830 4_4:+65836903 Msa0696050:CDS
ACATGTTCCTTCACAGAAAT+TGG 0.179613 4_4:+65836755 Msa0696050:CDS
TTTCCGACGAGCATCTTATT+AGG 0.208989 4_4:+65833860 Msa0696050:five_prime_UTR
ACTCGCTTCATTAATATTTC+TGG 0.224605 4_4:-65837039 None:intergenic
CTGTTGCAATTCTTCATATT+TGG 0.258493 4_4:-65835818 None:intergenic
ACATGGGAGGAGCTTCTTCT+TGG 0.262308 4_4:+65834060 Msa0696050:CDS
CTCATTCTTGTCAGCCTTGA+GGG 0.265381 4_4:-65836412 None:intergenic
GACAGGAAAAGGTTTGAAAT+TGG 0.282408 4_4:-65833736 None:intergenic
CCTTTGCAACATTAATCTTC+TGG 0.292069 4_4:-65838414 None:intergenic
ACCACCAGTACTAGGCTTCT+TGG 0.302528 4_4:-65838479 None:intergenic
CTTATATTGACGGGTGTTCT+TGG 0.307524 4_4:-65838263 None:intergenic
TATAACAAGTTTCAAATCAT+TGG 0.310397 4_4:-65838642 None:intergenic
TTCATAAGATTCGGAGTTGC+AGG 0.312088 4_4:-65838577 None:intergenic
TGTGAAGGAACATGTGATTC+TGG 0.321301 4_4:-65836747 None:intergenic
GAATTGCAACAGCGCTATTC+AGG 0.321488 4_4:+65835829 Msa0696050:CDS
TGTGAAGGAACATCTAATTC+TGG 0.326164 4_4:-65836474 None:intergenic
CCATTTGATATACTTCCTTT+TGG 0.337379 4_4:-65838756 None:intergenic
GGTGAGGTTGTCAAATCTTC+TGG 0.339149 4_4:+65837125 Msa0696050:CDS
TTCCGACGAGCATCTTATTA+GGG 0.353146 4_4:+65833861 Msa0696050:five_prime_UTR
ATTATGGTGTTGAATGCTTT+TGG 0.353330 4_4:-65833513 None:intergenic
ACATGGACTTTGACACTATA+AGG 0.354571 4_4:+65838152 Msa0696050:CDS
TTCATTTCCTTCATAAGATT+CGG 0.356180 4_4:-65838586 None:intergenic
GGAGAACACGAACTTGAAAA+AGG 0.362922 4_4:+65837157 Msa0696050:CDS
GAGAAATCAGAAGATTCAAT+TGG 0.363491 4_4:+65836111 Msa0696050:CDS
AGCAGAGCTTAAGCGAGCTT+TGG 0.364114 4_4:+65836089 Msa0696050:CDS
TCATGTACTATTAAAATTGT+TGG 0.369977 4_4:-65833627 None:intergenic
CAGAAGACATTGCTGGAACT+TGG 0.372442 4_4:-65836872 None:intergenic
AGCATCTTATTAGGGTTAAT+CGG 0.380327 4_4:+65833869 Msa0696050:five_prime_UTR
GACAACCTCACCACAGTTGC+TGG 0.380777 4_4:-65837114 None:intergenic
TTCATTTGATTGAGAGGGAC+AGG 0.387630 4_4:-65833753 None:intergenic
TGGGAGGAGCTTCTTCTTGG+TGG 0.399007 4_4:+65834063 Msa0696050:CDS
ATTCAAAACTTTCTCATGTT+CGG 0.403224 4_4:-65836931 None:intergenic
AAGAAATTCATTTGATTGAG+AGG 0.403431 4_4:-65833759 None:intergenic
TTCTTGGTGGAGCTGTTATC+CGG 0.405630 4_4:+65834076 Msa0696050:CDS
CATGTACTATTAAAATTGTT+GGG 0.407592 4_4:-65833626 None:intergenic
TCCGGCACGGCACTGGTGAT+TGG 0.416103 4_4:+65834094 Msa0696050:CDS
CACTGCTAGGGCTTGGTATG+AGG 0.418968 4_4:+65836047 Msa0696050:intron
TCTTTACTACCACCAGTACT+AGG 0.419066 4_4:-65838487 None:intergenic
TCAAAGGATGGGCTATCTGC+TGG 0.419315 4_4:+65836534 Msa0696050:CDS
CACATCAAACCGATACAAAC+TGG 0.424104 4_4:+65836565 Msa0696050:CDS
AAAGGAGAGGAAAGAGAAAG+AGG 0.432152 4_4:+65837006 Msa0696050:CDS
TCTAGATTACAGTAACTAAC+TGG 0.434567 4_4:+65838676 Msa0696050:three_prime_UTR
TGATTGAGAGGGACAGGAAA+AGG 0.438254 4_4:-65833747 None:intergenic
ATGTCTTCAGAAGACATTGC+TGG 0.442846 4_4:-65836606 None:intergenic
ATGTCTTCAGAAGACATTGC+TGG 0.442846 4_4:-65836879 None:intergenic
ACATTAATCTTCTGGTTACA+AGG 0.444554 4_4:-65838406 None:intergenic
CAGAAGACATTGCTGGAACC+TGG 0.448111 4_4:-65836599 None:intergenic
TGTCAAAGTCCATGTGTCTC+TGG 0.448970 4_4:-65838144 None:intergenic
AGCGTACACGTGTACGAAGA+TGG 0.450787 4_4:+65834011 Msa0696050:exon
GAAGGGACAACATAGGATAT+TGG 0.455905 4_4:+65838780 Msa0696050:three_prime_UTR
GCTGTTATCCGGCACGGCAC+TGG 0.459398 4_4:+65834087 Msa0696050:CDS
GATGGCAGCGATCCTGCCTC+GGG 0.461840 4_4:+65838442 Msa0696050:CDS
GACAGCTTTCTTGATGTGTA+AGG 0.464881 4_4:-65838533 None:intergenic
CCAAAAGGAAGTATATCAAA+TGG 0.468725 4_4:+65838756 Msa0696050:three_prime_UTR
CGATGGCAGCGATCCTGCCT+CGG 0.469474 4_4:+65838441 Msa0696050:CDS
TAAAGAGAATTCTCCGTCTT+CGG 0.474363 4_4:+65838504 Msa0696050:CDS
AGATCTCGCCTGGTGTTTCA+GGG 0.481234 4_4:+65836631 Msa0696050:CDS
TGGTAGAACTTTCTTTCAGC+CGG 0.484226 4_4:-65837094 None:intergenic
TGGTTACAAGGGCGGACACT+TGG 0.484662 4_4:-65838394 None:intergenic
ACTAAAGAGTTGTCAAAGGA+TGG 0.489392 4_4:+65836522 Msa0696050:CDS
AGAAATCAGAAGATTCAATT+GGG 0.490341 4_4:+65836112 Msa0696050:CDS
ACCAATCACCAGTGCCGTGC+CGG 0.491886 4_4:-65834095 None:intergenic
AAATGAAGGAAAAGAAAAGA+CGG 0.493555 4_4:+65838602 Msa0696050:CDS
CTTGTTGACAACAACTCAGT+TGG 0.494073 4_4:+65836450 Msa0696050:CDS
AGAAATTCATTTGATTGAGA+GGG 0.495890 4_4:-65833758 None:intergenic
AGCACCGGGTGCGTAGGATT+AGG 0.496693 4_4:+65833949 Msa0696050:five_prime_UTR
AGATTACGCCTGGTGTTTCA+GGG 0.501278 4_4:+65836904 Msa0696050:CDS
AAAAGAAAAGACGGAGAACT+AGG 0.503354 4_4:+65838611 Msa0696050:CDS
TCTCATTCTTGTCAGCCTTG+AGG 0.505573 4_4:-65836413 None:intergenic
TGGTTTCAATCAATAGGTAG+TGG 0.509373 4_4:-65833568 None:intergenic
GGAAGTATATCAAATGGAGA+AGG 0.519377 4_4:+65838762 Msa0696050:three_prime_UTR
GAAGACATGGAGATCTCGCC+TGG 0.524803 4_4:+65836621 Msa0696050:CDS
AGCGGAAGTGATTGTGACGT+GGG 0.526318 4_4:+65834035 Msa0696050:CDS
AAAGGAATGAGGTAAGAAGA+AGG 0.527790 4_4:-65833710 None:intergenic
ACTAAAGAGACGTCAAAGGA+TGG 0.530356 4_4:+65836795 Msa0696050:CDS
GATAAGTTGACAGATACAGC+TGG 0.532080 4_4:+65836684 Msa0696050:CDS
GAGAGGAAAGAGAAAGAGGA+AGG 0.532691 4_4:+65837010 Msa0696050:CDS
GAATCTTATGAAGGAAATGA+AGG 0.534107 4_4:+65838588 Msa0696050:CDS
CTGTCGTAAGCATGATAGCC+AGG 0.534429 4_4:+65837244 Msa0696050:CDS
GGTAGAACTTTCTTTCAGCC+GGG 0.535651 4_4:-65837093 None:intergenic
TCAAAGGATGGGTTATCTGC+TGG 0.536634 4_4:+65836807 Msa0696050:CDS
ACTCTCTCCAATTTCTGTGA+AGG 0.536812 4_4:-65836762 None:intergenic
GGTTACAAGGGCGGACACTT+GGG 0.540653 4_4:-65838393 None:intergenic
CAACAAAACAATTGATTCAG+TGG 0.544548 4_4:+65838186 Msa0696050:CDS
TCGTCGCGGCGGAGCTCCGA+GGG 0.544805 4_4:+65834121 Msa0696050:CDS
AAACTGGTCTCATGAATGCC+AGG 0.546467 4_4:+65836581 Msa0696050:CDS
GTAGAACAGCAAAGCATTGG+TGG 0.547197 4_4:-65838239 None:intergenic
TCGGAGCTCCGCCGCGACGA+CGG 0.548546 4_4:-65834118 None:intergenic
TGCAACTCCGAATCTTATGA+AGG 0.548743 4_4:+65838579 Msa0696050:CDS
CAAAGGATGGGCTATCTGCT+GGG 0.550496 4_4:+65836535 Msa0696050:CDS
TTCATGAGACCAGTTTGTAT+CGG 0.551753 4_4:-65836574 None:intergenic
CCAGAAGATTAATGTTGCAA+AGG 0.552998 4_4:+65838414 Msa0696050:CDS
GGAGTAGAACAGCAAAGCAT+TGG 0.553418 4_4:-65838242 None:intergenic
GGCTCCTAATCCTACGCACC+CGG 0.554751 4_4:-65833953 None:intergenic
TTATTAGGGTTAATCGGAGA+AGG 0.560583 4_4:+65833875 Msa0696050:five_prime_UTR
AAAGCCAAGAAGCCTAGTAC+TGG 0.562628 4_4:+65838475 Msa0696050:CDS
GTCGTCGCGGCGGAGCTCCG+AGG 0.563753 4_4:+65834120 Msa0696050:CDS
GAAGACATGGAGATTACGCC+TGG 0.563944 4_4:+65836894 Msa0696050:CDS
CGAGGCAGGATCGCTGCCAT+CGG 0.565755 4_4:-65838440 None:intergenic
TTGAAAGAGACTGTATATGA+AGG 0.565850 4_4:+65836963 Msa0696050:CDS
ACACTTGGGACTTTCAAAGA+AGG 0.569561 4_4:-65838379 None:intergenic
CTAAAGAGTTGTCAAAGGAT+GGG 0.572945 4_4:+65836523 Msa0696050:CDS
TGTAAGGATTTCACCGAAGA+CGG 0.573201 4_4:-65838517 None:intergenic
GAAGTATATCAAATGGAGAA+GGG 0.575058 4_4:+65838763 Msa0696050:three_prime_UTR
GCGTACACGTGTACGAAGAT+GGG 0.575736 4_4:+65834012 Msa0696050:exon
TAGTGCAGACTTATATTGAC+GGG 0.575938 4_4:-65838272 None:intergenic
GGTGTAATAGCGGAAGGAGA+AGG 0.576294 4_4:-65834150 None:intergenic
GGTGGAGCTGTTATCCGGCA+CGG 0.577297 4_4:+65834081 Msa0696050:CDS
ACTCTCTCTAATTTCTGTGA+AGG 0.579129 4_4:-65836489 None:intergenic
CTAAAGAGACGTCAAAGGAT+GGG 0.581958 4_4:+65836796 Msa0696050:CDS
AGCAATGTCTTCTGAAGACA+TGG 0.586266 4_4:+65836608 Msa0696050:CDS
AGCAATGTCTTCTGAAGACA+TGG 0.586266 4_4:+65836881 Msa0696050:CDS
ACCTCGGGTGTAATAGCGGA+AGG 0.590376 4_4:-65834156 None:intergenic
TTCTACTAAAGAGTTGTCAA+AGG 0.593159 4_4:+65836518 Msa0696050:CDS
AACCCTAATAAGATGCTCGT+CGG 0.594773 4_4:-65833863 None:intergenic
AACGTTAGCACCGGGTGCGT+AGG 0.596185 4_4:+65833943 Msa0696050:five_prime_UTR
AAGGAGAAGGAGTTCTCCCT+CGG 0.596440 4_4:-65834137 None:intergenic
TTTGATAGCAGAAGCGACAA+AGG 0.602191 4_4:+65838107 Msa0696050:intron
AAATGGAGAAGGGACAACAT+AGG 0.604941 4_4:+65838773 Msa0696050:three_prime_UTR
TCCTTCCGCTATTACACCCG+AGG 0.606450 4_4:+65834155 Msa0696050:CDS
ATCAAAGCTTGAATCCCTCA+AGG 0.606788 4_4:+65836398 Msa0696050:CDS
GAGCGGAAGTGATTGTGACG+TGG 0.615869 4_4:+65834034 Msa0696050:CDS
CATTAATCTTCTGGTTACAA+GGG 0.620404 4_4:-65838405 None:intergenic
GGATGGAACGAAATATCTGA+TGG 0.620871 4_4:+65837178 Msa0696050:CDS
CACATCAAGAAAGCTGTCGG+TGG 0.621814 4_4:+65838538 Msa0696050:CDS
TGGTGATTGGTCCGTCGTCG+CGG 0.623067 4_4:+65834107 Msa0696050:CDS
AGATTACAGTAACTAACTGG+TGG 0.627243 4_4:+65838679 Msa0696050:three_prime_UTR
GAAAGTTCTACCAGCAACTG+TGG 0.627439 4_4:+65837104 Msa0696050:CDS
GCCAAGAAGCCTAGTACTGG+TGG 0.629237 4_4:+65838478 Msa0696050:CDS
TCAATAGACCCTGAAACACC+AGG 0.632152 4_4:-65836639 None:intergenic
TTCAACTAAAGAGACGTCAA+AGG 0.633541 4_4:+65836791 Msa0696050:CDS
GTAGTGCAGACTTATATTGA+CGG 0.634239 4_4:-65838273 None:intergenic
TCGGTTGACCCTGAAACACC+AGG 0.635035 4_4:-65836912 None:intergenic
GAGACTGTATATGAAGGACA+TGG 0.635564 4_4:+65836969 Msa0696050:CDS
TAATCTTCTGGTTACAAGGG+CGG 0.635573 4_4:-65838402 None:intergenic
TTAGGGTTAATCGGAGAAGG+TGG 0.636183 4_4:+65833878 Msa0696050:five_prime_UTR
TTCTACCAGCAACTGTGGTG+AGG 0.636519 4_4:+65837109 Msa0696050:CDS
CAAATCTTCTGGTGTAACTG+AGG 0.640200 4_4:+65837136 Msa0696050:CDS
TTACACATCAAGAAAGCTGT+CGG 0.641394 4_4:+65838535 Msa0696050:CDS
TATTACCTCGGGTGTAATAG+CGG 0.641692 4_4:-65834160 None:intergenic
ATAAGTTGACAGATACAGCT+GGG 0.644236 4_4:+65836685 Msa0696050:CDS
AATGTTGCAAAGGTAGCCGA+TGG 0.645708 4_4:+65838424 Msa0696050:CDS
GCGGAAGTGATTGTGACGTG+GGG 0.650849 4_4:+65834036 Msa0696050:CDS
TGGCAGCGATCCTGCCTCGG+GGG 0.651961 4_4:+65838444 Msa0696050:CDS
ATGGCAGCGATCCTGCCTCG+GGG 0.654156 4_4:+65838443 Msa0696050:CDS
CTGTATATGAAGGACATGGA+GGG 0.672772 4_4:+65836973 Msa0696050:CDS
GCAGTTAATCCAGAGACACA+TGG 0.675440 4_4:+65838135 Msa0696050:CDS
ACTGTATATGAAGGACATGG+AGG 0.676971 4_4:+65836972 Msa0696050:CDS
CACGTGTACGAAGATGGGAG+CGG 0.678942 4_4:+65834017 Msa0696050:exon
CGGAAGTGATTGTGACGTGG+GGG 0.689342 4_4:+65834037 Msa0696050:CDS
TGATTGGTCCGTCGTCGCGG+CGG 0.715637 4_4:+65834110 Msa0696050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAAAATATTTTTTTTA+AGG - chr4_4:65834454-65834473 None:intergenic 0.0%
!! ATTCAAACATAATTTAATAT+TGG + chr4_4:65834252-65834271 Msa0696050:intron 10.0%
!!! TTTTTATCATAAACTAAATT+GGG - chr4_4:65834413-65834432 None:intergenic 10.0%
!!! TTTTTTATCATAAACTAAAT+TGG - chr4_4:65834414-65834433 None:intergenic 10.0%
!! AAAATGCTAAAATATATTAA+TGG + chr4_4:65835079-65835098 Msa0696050:intron 10.0%
!! TAAAAAAAAAAAAACTATGA+CGG - chr4_4:65835232-65835251 None:intergenic 10.0%
!!! CATAGTTTTTTTTTTTTTAT+TGG + chr4_4:65835233-65835252 Msa0696050:intron 10.0%
!!! TCTTTTTATTTAAATATGTT+AGG - chr4_4:65835413-65835432 None:intergenic 10.0%
!! AACATATTTAAATAAAAAGA+TGG + chr4_4:65835413-65835432 Msa0696050:intron 10.0%
!!! TAATGAAATATTTCTATTTT+AGG - chr4_4:65837673-65837692 None:intergenic 10.0%
!! TTATTGAATTGAATTGAATA+TGG + chr4_4:65834785-65834804 Msa0696050:intron 15.0%
!!! ATTTTTCATTCATTTTCAAA+TGG + chr4_4:65835109-65835128 Msa0696050:intron 15.0%
!!! TTTTTCATTCATTTTCAAAT+GGG + chr4_4:65835110-65835129 Msa0696050:intron 15.0%
!! CATTGTATTATATGATAATA+TGG + chr4_4:65836024-65836043 Msa0696050:intron 15.0%
!!! ATAATGTTTTTGATGATAAT+AGG + chr4_4:65837324-65837343 Msa0696050:intron 15.0%
!!! TACTATTATGTTTCTATATT+TGG + chr4_4:65837562-65837581 Msa0696050:intron 15.0%
!! AATTTGGATGATTATAAATT+GGG + chr4_4:65837608-65837627 Msa0696050:intron 15.0%
!! GATATAGTTGAAATTTATAA+GGG - chr4_4:65837813-65837832 None:intergenic 15.0%
!! AGATATAGTTGAAATTTATA+AGG - chr4_4:65837814-65837833 None:intergenic 15.0%
!!! TTTTTTTGGTTTCAATCAAT+AGG - chr4_4:65833577-65833596 None:intergenic 20.0%
!! CATGTACTATTAAAATTGTT+GGG - chr4_4:65833629-65833648 None:intergenic 20.0%
!! TCATGTACTATTAAAATTGT+TGG - chr4_4:65833630-65833649 None:intergenic 20.0%
!! CAAAAACAAAAACAAAACTA+TGG - chr4_4:65833684-65833703 None:intergenic 20.0%
!!! GGTGTTTTTTTTTTCAATTT+AGG + chr4_4:65833899-65833918 Msa0696050:five_prime_UTR 20.0%
!!! GTTTTTTTTTTCAATTTAGG+AGG + chr4_4:65833902-65833921 Msa0696050:five_prime_UTR 20.0%
!! ACCATGTAATAATAATGTAA+CGG - chr4_4:65834292-65834311 None:intergenic 20.0%
!! ATTTAACTCGTTATAATAGA+GGG - chr4_4:65834552-65834571 None:intergenic 20.0%
!! ATACAACAAATTGAATAAAG+TGG - chr4_4:65834926-65834945 None:intergenic 20.0%
!! CATTATATCATATATGCATA+TGG + chr4_4:65834946-65834965 Msa0696050:intron 20.0%
!!! TTGTTCTAAGTATTTGTTAA+CGG + chr4_4:65834997-65835016 Msa0696050:intron 20.0%
!!! GTTTATTTTGTTCCTAAATT+TGG + chr4_4:65835727-65835746 Msa0696050:intron 20.0%
!! AATAAAATCAACAGTTGAAA+AGG - chr4_4:65835761-65835780 None:intergenic 20.0%
!! AAACTGAAAAATCAACTAAA+GGG - chr4_4:65837294-65837313 None:intergenic 20.0%
!! AAAACTGAAAAATCAACTAA+AGG - chr4_4:65837295-65837314 None:intergenic 20.0%
!! TATCATCAAAAACATTATTG+AGG - chr4_4:65837322-65837341 None:intergenic 20.0%
!! TATTAAAGATGAAATGCAAA+TGG - chr4_4:65837365-65837384 None:intergenic 20.0%
!!! TATTTTTTTTCTTCCACATT+AGG + chr4_4:65837387-65837406 Msa0696050:intron 20.0%
!!! TTTTCCAAAATAAGTTTGTT+TGG - chr4_4:65837496-65837515 None:intergenic 20.0%
!! ATCATTATTAAACACCAATT+TGG + chr4_4:65837592-65837611 Msa0696050:intron 20.0%
!! CAATTTATAATCATCCAAAT+TGG - chr4_4:65837609-65837628 None:intergenic 20.0%
!! CAATTTGGATGATTATAAAT+TGG + chr4_4:65837607-65837626 Msa0696050:intron 20.0%
!!! CAAATGTAGAAACTTTTTAT+TGG - chr4_4:65837751-65837770 None:intergenic 20.0%
!!! TTTTTCGTCAATGTAAATAT+AGG + chr4_4:65837855-65837874 Msa0696050:intron 20.0%
!!! TTTTCGTCAATGTAAATATA+GGG + chr4_4:65837856-65837875 Msa0696050:intron 20.0%
!! TATAACAAGTTTCAAATCAT+TGG - chr4_4:65838645-65838664 None:intergenic 20.0%
!!! TTATTTTTGTTTTTGCCAAA+AGG + chr4_4:65838741-65838760 Msa0696050:three_prime_UTR 20.0%
!! TTTTTGTGAAATGACGATTA+TGG - chr4_4:65833532-65833551 None:intergenic 25.0%
!!! ATAGGTAGTGGTTTTTATTT+GGG - chr4_4:65833559-65833578 None:intergenic 25.0%
!!! AATAGGTAGTGGTTTTTATT+TGG - chr4_4:65833560-65833579 None:intergenic 25.0%
!! AAGGTTTGAAATTGGAAAAA+AGG - chr4_4:65833731-65833750 None:intergenic 25.0%
! AGAAATTCATTTGATTGAGA+GGG - chr4_4:65833761-65833780 None:intergenic 25.0%
! AAGAAATTCATTTGATTGAG+AGG - chr4_4:65833762-65833781 None:intergenic 25.0%
!!! TTCCTTTTTTTTCTTTGTCA+GGG - chr4_4:65833789-65833808 None:intergenic 25.0%
!!! TTTCCTTTTTTTTCTTTGTC+AGG - chr4_4:65833790-65833809 None:intergenic 25.0%
!!! TTTTTTTCAATTTAGGAGGT+CGG + chr4_4:65833906-65833925 Msa0696050:five_prime_UTR 25.0%
! AGTGGAATATTATATTACCT+CGG - chr4_4:65834175-65834194 None:intergenic 25.0%
! ACCGTTACATTATTATTACA+TGG + chr4_4:65834288-65834307 Msa0696050:intron 25.0%
! AGTTTAATGAATTGTCAATC+AGG - chr4_4:65834318-65834337 None:intergenic 25.0%
! GATTTAACTCGTTATAATAG+AGG - chr4_4:65834553-65834572 None:intergenic 25.0%
! TTATTATTGCTCACATTCTT+CGG - chr4_4:65834725-65834744 None:intergenic 25.0%
!!! AACAAAAAGAGTGTTCTATT+TGG + chr4_4:65834835-65834854 Msa0696050:intron 25.0%
! ATAACTTAGCATAGTAATTG+AGG - chr4_4:65835185-65835204 None:intergenic 25.0%
! ATTACTATGCTAAGTTATGT+TGG + chr4_4:65835187-65835206 Msa0696050:intron 25.0%
! CTAAATCTCAATTGTTTCAT+AGG + chr4_4:65835330-65835349 Msa0696050:intron 25.0%
! ACAAACATTTCTAAGTTCTA+AGG + chr4_4:65835367-65835386 Msa0696050:intron 25.0%
!!! CATCTTTTTATTTAACCACA+TGG - chr4_4:65835497-65835516 None:intergenic 25.0%
! CATGTGGTTAAATAAAAAGA+TGG + chr4_4:65835495-65835514 Msa0696050:intron 25.0%
! GAAATAAAGAATGATAAGAG+TGG - chr4_4:65835656-65835675 None:intergenic 25.0%
! ACAAAATAAACCTAACAAGA+AGG - chr4_4:65835718-65835737 None:intergenic 25.0%
!!! TAGTGAATTATCATTTTTGC+AGG + chr4_4:65835786-65835805 Msa0696050:intron 25.0%
!! TTGTTTAAATTTTCCCAACT+TGG + chr4_4:65835887-65835906 Msa0696050:intron 25.0%
! TACAATGAGATATACTATAC+AGG - chr4_4:65836011-65836030 None:intergenic 25.0%
! AGAAATCAGAAGATTCAATT+GGG + chr4_4:65836112-65836131 Msa0696050:CDS 25.0%
! ATTCAAAACTTTCTCATGTT+CGG - chr4_4:65836661-65836680 None:intergenic 25.0%
!!! GATTCTGTTTTGGAAATTAA+AGG + chr4_4:65837209-65837228 Msa0696050:CDS 25.0%
!! AAATTTTTCATTGCCTAATG+TGG - chr4_4:65837403-65837422 None:intergenic 25.0%
! ACATTAGGCAATGAAAAATT+TGG + chr4_4:65837402-65837421 Msa0696050:intron 25.0%
!!! TTTTCCAAAATTAGTCTGTT+TGG - chr4_4:65837452-65837471 None:intergenic 25.0%
!! TGAACCAAACAAACTTATTT+TGG + chr4_4:65837489-65837508 Msa0696050:intron 25.0%
!!! ACATGAAACTAGTTTTTGTT+TGG - chr4_4:65837532-65837551 None:intergenic 25.0%
!! TCTTTTGATCCTTTTATTCT+TGG + chr4_4:65837884-65837903 Msa0696050:intron 25.0%
! AGATTCAAACCAAGAATAAA+AGG - chr4_4:65837896-65837915 None:intergenic 25.0%
! TCGTAAACAATTTCAAAAGT+AGG - chr4_4:65838027-65838046 None:intergenic 25.0%
!!! CTTTTGAAATTGTTTACGAA+TGG + chr4_4:65838028-65838047 Msa0696050:intron 25.0%
! TATTGTCAAAGAAAAACTGA+CGG + chr4_4:65838306-65838325 Msa0696050:CDS 25.0%
! TTCATTTCCTTCATAAGATT+CGG - chr4_4:65838589-65838608 None:intergenic 25.0%
! AAATGAAGGAAAAGAAAAGA+CGG + chr4_4:65838602-65838621 Msa0696050:CDS 25.0%
!! ATTATGGTGTTGAATGCTTT+TGG - chr4_4:65833516-65833535 None:intergenic 30.0%
!! TAGGTAGTGGTTTTTATTTG+GGG - chr4_4:65833558-65833577 None:intergenic 30.0%
GAAATTGGAAAAAAGGAATG+AGG - chr4_4:65833724-65833743 None:intergenic 30.0%
!!! TCCTTTTTTTTCTTTGTCAG+GGG - chr4_4:65833788-65833807 None:intergenic 30.0%
!!! AATGTGGTTTTGTCAATTCT+GGG - chr4_4:65833833-65833852 None:intergenic 30.0%
!!! AAATGTGGTTTTGTCAATTC+TGG - chr4_4:65833834-65833853 None:intergenic 30.0%
AGCATCTTATTAGGGTTAAT+CGG + chr4_4:65833869-65833888 Msa0696050:five_prime_UTR 30.0%
!!! TTTTTTGTTAACGTTAGCAC+CGG + chr4_4:65833934-65833953 Msa0696050:five_prime_UTR 30.0%
!!! AACACCACTTGTTTTTTTCA+AGG - chr4_4:65833977-65833996 None:intergenic 30.0%
GTGGAATATTATATTACCTC+GGG - chr4_4:65834174-65834193 None:intergenic 30.0%
TTAATGAATTGTCAATCAGG+AGG - chr4_4:65834315-65834334 None:intergenic 30.0%
! ATCAGAGTAAAAACCCATTT+TGG + chr4_4:65834367-65834386 Msa0696050:intron 30.0%
! TCTAACAGCTTGATTTTGTT+AGG + chr4_4:65834571-65834590 Msa0696050:intron 30.0%
! CTAACAGCTTGATTTTGTTA+GGG + chr4_4:65834572-65834591 Msa0696050:intron 30.0%
TAAATTGCAAGTCTCTATTC+TGG + chr4_4:65834596-65834615 Msa0696050:intron 30.0%
! CTCTATTCTGGCTATTAATT+CGG + chr4_4:65834608-65834627 Msa0696050:intron 30.0%
AAAATTGTGTTCTCTTGACA+AGG + chr4_4:65834663-65834682 Msa0696050:intron 30.0%
TTAAAGCAATGCATGATGTA+TGG + chr4_4:65834812-65834831 Msa0696050:intron 30.0%
! TTTTGCGTATACAATGGTTA+TGG + chr4_4:65834866-65834885 Msa0696050:intron 30.0%
TTTGCGTATACAATGGTTAT+GGG + chr4_4:65834867-65834886 Msa0696050:intron 30.0%
ATATATGCATATGGTTGTTG+AGG + chr4_4:65834955-65834974 Msa0696050:intron 30.0%
ATGTGCTTAAAATAGAGGTT+TGG - chr4_4:65835023-65835042 None:intergenic 30.0%
!! AAACCTCTATTTTAAGCACA+TGG + chr4_4:65835022-65835041 Msa0696050:intron 30.0%
!!! AGTTCTAAGGAACTTTTCAT+TGG + chr4_4:65835380-65835399 Msa0696050:intron 30.0%
CTGTTGCAATTCTTCATATT+TGG - chr4_4:65835821-65835840 None:intergenic 30.0%
GAGAAATCAGAAGATTCAAT+TGG + chr4_4:65836111-65836130 Msa0696050:CDS 30.0%
GACATAATCTCAGCTTAAAA+AGG - chr4_4:65836160-65836179 None:intergenic 30.0%
TGTGTGTAAACCTATAGATT+TGG - chr4_4:65836251-65836270 None:intergenic 30.0%
! TAACTGTACATCTTTGTTTC+AGG + chr4_4:65836367-65836386 Msa0696050:intron 30.0%
TTCTACTAAAGAGTTGTCAA+AGG + chr4_4:65836518-65836537 Msa0696050:CDS 30.0%
TTGAAAGAGACTGTATATGA+AGG + chr4_4:65836963-65836982 Msa0696050:CDS 30.0%
ACTCGCTTCATTAATATTTC+TGG - chr4_4:65837042-65837061 None:intergenic 30.0%
!! ATTTTTCAATTGATGTGTCC+CGG + chr4_4:65837075-65837094 Msa0696050:CDS 30.0%
! TGAACCAAACAGACTAATTT+TGG + chr4_4:65837445-65837464 Msa0696050:intron 30.0%
! CAACAAAACAATTGATTCAG+TGG + chr4_4:65838186-65838205 Msa0696050:CDS 30.0%
! CATTAATCTTCTGGTTACAA+GGG - chr4_4:65838408-65838427 None:intergenic 30.0%
! ACATTAATCTTCTGGTTACA+AGG - chr4_4:65838409-65838428 None:intergenic 30.0%
GAATCTTATGAAGGAAATGA+AGG + chr4_4:65838588-65838607 Msa0696050:CDS 30.0%
TCTAGATTACAGTAACTAAC+TGG + chr4_4:65838676-65838695 Msa0696050:three_prime_UTR 30.0%
! CCATTTGATATACTTCCTTT+TGG - chr4_4:65838759-65838778 None:intergenic 30.0%
! CCAAAAGGAAGTATATCAAA+TGG + chr4_4:65838756-65838775 Msa0696050:three_prime_UTR 30.0%
GAAGTATATCAAATGGAGAA+GGG + chr4_4:65838763-65838782 Msa0696050:three_prime_UTR 30.0%
TGGTTTCAATCAATAGGTAG+TGG - chr4_4:65833571-65833590 None:intergenic 35.0%
AAAGGAATGAGGTAAGAAGA+AGG - chr4_4:65833713-65833732 None:intergenic 35.0%
! GACAGGAAAAGGTTTGAAAT+TGG - chr4_4:65833739-65833758 None:intergenic 35.0%
ACCCCTGACAAAGAAAAAAA+AGG + chr4_4:65833784-65833803 Msa0696050:five_prime_UTR 35.0%
CGTCGGAAAATTGAAAAATG+TGG - chr4_4:65833849-65833868 None:intergenic 35.0%
TTATTAGGGTTAATCGGAGA+AGG + chr4_4:65833875-65833894 Msa0696050:five_prime_UTR 35.0%
! TTTTTGTTAACGTTAGCACC+GGG + chr4_4:65833935-65833954 Msa0696050:five_prime_UTR 35.0%
AATAGAGGGACTAATGTGTT+CGG - chr4_4:65834538-65834557 None:intergenic 35.0%
! AACGTGTTTTGCGTATACAA+TGG + chr4_4:65834860-65834879 Msa0696050:intron 35.0%
AAGCCATGTGCTTAAAATAG+AGG - chr4_4:65835028-65835047 None:intergenic 35.0%
!! TCTATTTTAAGCACATGGCT+TGG + chr4_4:65835027-65835046 Msa0696050:intron 35.0%
AAAGATGGTGTATAACCATG+TGG + chr4_4:65835428-65835447 Msa0696050:intron 35.0%
AAAGATGGTGTATAACCATG+TGG + chr4_4:65835428-65835447 Msa0696050:intron 35.0%
TCATTGAGACATAAACCACA+TGG - chr4_4:65835579-65835598 None:intergenic 35.0%
TTTATGTCTCAATGAGTGTG+CGG + chr4_4:65835584-65835603 Msa0696050:intron 35.0%
! TGCTACTTACATTGATGAGA+TGG + chr4_4:65835622-65835641 Msa0696050:intron 35.0%
TAAACCTAACAAGAAGGCTT+TGG - chr4_4:65835712-65835731 None:intergenic 35.0%
AAGGCATGTGTTCCAAATTT+AGG - chr4_4:65835742-65835761 None:intergenic 35.0%
AAAAGATGTACTGCCAAGTT+GGG - chr4_4:65835903-65835922 None:intergenic 35.0%
AAAAAGATGTACTGCCAAGT+TGG - chr4_4:65835904-65835923 None:intergenic 35.0%
TATGATAATATGGCACTGCT+AGG + chr4_4:65836034-65836053 Msa0696050:intron 35.0%
ATGATAATATGGCACTGCTA+GGG + chr4_4:65836035-65836054 Msa0696050:intron 35.0%
GAAATGTCGACCAAATCTAT+AGG + chr4_4:65836238-65836257 Msa0696050:intron 35.0%
AGATTTCTATGATCCACTGT+TGG + chr4_4:65836321-65836340 Msa0696050:intron 35.0%
! ATCCACTGTTGGATTTTCAT+CGG + chr4_4:65836332-65836351 Msa0696050:intron 35.0%
!!! TGTTGGATTTTCATCGGTTT+GGG + chr4_4:65836338-65836357 Msa0696050:intron 35.0%
TGTGAAGGAACATCTAATTC+TGG - chr4_4:65836477-65836496 None:intergenic 35.0%
ACTCTCTCTAATTTCTGTGA+AGG - chr4_4:65836492-65836511 None:intergenic 35.0%
ACTAAAGAGTTGTCAAAGGA+TGG + chr4_4:65836522-65836541 Msa0696050:CDS 35.0%
CTAAAGAGTTGTCAAAGGAT+GGG + chr4_4:65836523-65836542 Msa0696050:CDS 35.0%
TTCATGAGACCAGTTTGTAT+CGG - chr4_4:65836577-65836596 None:intergenic 35.0%
! ATAAGTTGACAGATACAGCT+GGG + chr4_4:65836685-65836704 Msa0696050:CDS 35.0%
ACATGTTCCTTCACAGAAAT+TGG + chr4_4:65836755-65836774 Msa0696050:CDS 35.0%
TTCAACTAAAGAGACGTCAA+AGG + chr4_4:65836791-65836810 Msa0696050:CDS 35.0%
! TTCTTGAGACCAGTTTTTCT+GGG - chr4_4:65836850-65836869 None:intergenic 35.0%
! ATTCTTGAGACCAGTTTTTC+TGG - chr4_4:65836851-65836870 None:intergenic 35.0%
AACACGAACTTGAAAAAGGA+TGG + chr4_4:65837161-65837180 Msa0696050:CDS 35.0%
! GGCGATTTTAGATTCTGTTT+TGG + chr4_4:65837199-65837218 Msa0696050:CDS 35.0%
TGCAAATGGCAATAAACTAG+TGG - chr4_4:65837351-65837370 None:intergenic 35.0%
!! TCATGTTAACTTGTGTCCTA+AGG + chr4_4:65837631-65837650 Msa0696050:intron 35.0%
!! CATGTTAACTTGTGTCCTAA+GGG + chr4_4:65837632-65837651 Msa0696050:intron 35.0%
!! ACTCATTAACTTGTGCCTTT+AGG + chr4_4:65837771-65837790 Msa0696050:intron 35.0%
!! CTCATTAACTTGTGCCTTTA+GGG + chr4_4:65837772-65837791 Msa0696050:intron 35.0%
!! AATGTTAACTTGTGCCCTAA+AGG - chr4_4:65837789-65837808 None:intergenic 35.0%
ACATGGACTTTGACACTATA+AGG + chr4_4:65838152-65838171 Msa0696050:CDS 35.0%
TAGTGCAGACTTATATTGAC+GGG - chr4_4:65838275-65838294 None:intergenic 35.0%
GTAGTGCAGACTTATATTGA+CGG - chr4_4:65838276-65838295 None:intergenic 35.0%
CCTTTGCAACATTAATCTTC+TGG - chr4_4:65838417-65838436 None:intergenic 35.0%
CCAGAAGATTAATGTTGCAA+AGG + chr4_4:65838414-65838433 Msa0696050:CDS 35.0%
TAAAGAGAATTCTCCGTCTT+CGG + chr4_4:65838504-65838523 Msa0696050:CDS 35.0%
TTACACATCAAGAAAGCTGT+CGG + chr4_4:65838535-65838554 Msa0696050:CDS 35.0%
AAAAGAAAAGACGGAGAACT+AGG + chr4_4:65838611-65838630 Msa0696050:CDS 35.0%
AGATTACAGTAACTAACTGG+TGG + chr4_4:65838679-65838698 Msa0696050:three_prime_UTR 35.0%
! GGAAGTATATCAAATGGAGA+AGG + chr4_4:65838762-65838781 Msa0696050:three_prime_UTR 35.0%
TTCATTTGATTGAGAGGGAC+AGG - chr4_4:65833756-65833775 None:intergenic 40.0%
!!! TGGTTTTGTCAATTCTGGGT+GGG - chr4_4:65833829-65833848 None:intergenic 40.0%
TTTCCGACGAGCATCTTATT+AGG + chr4_4:65833860-65833879 Msa0696050:five_prime_UTR 40.0%
TTCCGACGAGCATCTTATTA+GGG + chr4_4:65833861-65833880 Msa0696050:five_prime_UTR 40.0%
AACCCTAATAAGATGCTCGT+CGG - chr4_4:65833866-65833885 None:intergenic 40.0%
GGAGCCTTGAAAAAAACAAG+TGG + chr4_4:65833970-65833989 Msa0696050:five_prime_UTR 40.0%
TATTACCTCGGGTGTAATAG+CGG - chr4_4:65834163-65834182 None:intergenic 40.0%
CAAGAGCAAAGGACCAAAAT+GGG - chr4_4:65834383-65834402 None:intergenic 40.0%
!! CATTTTGGTCCTTTGCTCTT+GGG + chr4_4:65834382-65834401 Msa0696050:intron 40.0%
AAGTGGCGAACCAAAACAAT+TGG - chr4_4:65834909-65834928 None:intergenic 40.0%
TATGCATATGGTTGTTGAGG+TGG + chr4_4:65834958-65834977 Msa0696050:intron 40.0%
! AGAACACGAGCATGTGTTTT+AGG - chr4_4:65835057-65835076 None:intergenic 40.0%
! ACCATGTGGTTTGTGATTGT+TGG + chr4_4:65835442-65835461 Msa0696050:intron 40.0%
ACCAACAATCACAAACCACA+TGG - chr4_4:65835446-65835465 None:intergenic 40.0%
TCAGAGTCTCTATAACCATG+TGG + chr4_4:65835479-65835498 Msa0696050:intron 40.0%
! ACCATGTGGTTTGTGATTGT+TGG + chr4_4:65835442-65835461 Msa0696050:intron 40.0%
ACCAACAATCACAAACCACA+TGG - chr4_4:65835446-65835465 None:intergenic 40.0%
TCAGAGTCTCTATAACCATG+TGG + chr4_4:65835479-65835498 Msa0696050:intron 40.0%
TATGCCAAAGCCTTCTTGTT+AGG + chr4_4:65835705-65835724 Msa0696050:intron 40.0%
AACCGATGAAAATCCAACAG+TGG - chr4_4:65836337-65836356 None:intergenic 40.0%
!! CTGTTGGATTTTCATCGGTT+TGG + chr4_4:65836337-65836356 Msa0696050:intron 40.0%
ATCAAAGCTTGAATCCCTCA+AGG + chr4_4:65836398-65836417 Msa0696050:CDS 40.0%
CTTGTTGACAACAACTCAGT+TGG + chr4_4:65836450-65836469 Msa0696050:CDS 40.0%
CACATCAAACCGATACAAAC+TGG + chr4_4:65836565-65836584 Msa0696050:CDS 40.0%
ATGTCTTCAGAAGACATTGC+TGG - chr4_4:65836609-65836628 None:intergenic 40.0%
! AGCAATGTCTTCTGAAGACA+TGG + chr4_4:65836608-65836627 Msa0696050:CDS 40.0%
! GATAAGTTGACAGATACAGC+TGG + chr4_4:65836684-65836703 Msa0696050:CDS 40.0%
TGTGAAGGAACATGTGATTC+TGG - chr4_4:65836750-65836769 None:intergenic 40.0%
ACTCTCTCCAATTTCTGTGA+AGG - chr4_4:65836765-65836784 None:intergenic 40.0%
ACTAAAGAGACGTCAAAGGA+TGG + chr4_4:65836795-65836814 Msa0696050:CDS 40.0%
CTAAAGAGACGTCAAAGGAT+GGG + chr4_4:65836796-65836815 Msa0696050:CDS 40.0%
CACATCAAACCCAGAAAAAC+TGG + chr4_4:65836838-65836857 Msa0696050:CDS 40.0%
ATGTCTTCAGAAGACATTGC+TGG - chr4_4:65836609-65836628 None:intergenic 40.0%
! AGCAATGTCTTCTGAAGACA+TGG + chr4_4:65836608-65836627 Msa0696050:CDS 40.0%
GAGACTGTATATGAAGGACA+TGG + chr4_4:65836969-65836988 Msa0696050:CDS 40.0%
ACTGTATATGAAGGACATGG+AGG + chr4_4:65836972-65836991 Msa0696050:CDS 40.0%
CTGTATATGAAGGACATGGA+GGG + chr4_4:65836973-65836992 Msa0696050:CDS 40.0%
TGGTAGAACTTTCTTTCAGC+CGG - chr4_4:65837097-65837116 None:intergenic 40.0%
CAAATCTTCTGGTGTAACTG+AGG + chr4_4:65837136-65837155 Msa0696050:CDS 40.0%
GGAGAACACGAACTTGAAAA+AGG + chr4_4:65837157-65837176 Msa0696050:CDS 40.0%
GGATGGAACGAAATATCTGA+TGG + chr4_4:65837178-65837197 Msa0696050:CDS 40.0%
! CAGGATCTTTTACACATACC+TGG - chr4_4:65837265-65837284 None:intergenic 40.0%
ATCAACTAAAGGGAGTGAAC+AGG - chr4_4:65837284-65837303 None:intergenic 40.0%
ATTGCTTAACATGTGCCCTT+AGG - chr4_4:65837650-65837669 None:intergenic 40.0%
! GTAGAGATTTGCTCAAGGAA+TGG + chr4_4:65838054-65838073 Msa0696050:intron 40.0%
! TTTGATAGCAGAAGCGACAA+AGG + chr4_4:65838107-65838126 Msa0696050:intron 40.0%
! CTTATATTGACGGGTGTTCT+TGG - chr4_4:65838266-65838285 None:intergenic 40.0%
AAGAAAAACTGACGGAGAAC+AGG + chr4_4:65838314-65838333 Msa0696050:CDS 40.0%
ACACTTGGGACTTTCAAAGA+AGG - chr4_4:65838382-65838401 None:intergenic 40.0%
! TAATCTTCTGGTTACAAGGG+CGG - chr4_4:65838405-65838424 None:intergenic 40.0%
TCTTTACTACCACCAGTACT+AGG - chr4_4:65838490-65838509 None:intergenic 40.0%
TGTAAGGATTTCACCGAAGA+CGG - chr4_4:65838520-65838539 None:intergenic 40.0%
GACAGCTTTCTTGATGTGTA+AGG - chr4_4:65838536-65838555 None:intergenic 40.0%
TTCATAAGATTCGGAGTTGC+AGG - chr4_4:65838580-65838599 None:intergenic 40.0%
TGCAACTCCGAATCTTATGA+AGG + chr4_4:65838579-65838598 Msa0696050:CDS 40.0%
!! ACTGGTGGTTTTACATCTGT+CGG + chr4_4:65838694-65838713 Msa0696050:three_prime_UTR 40.0%
AAATGGAGAAGGGACAACAT+AGG + chr4_4:65838773-65838792 Msa0696050:three_prime_UTR 40.0%
TGATTGAGAGGGACAGGAAA+AGG - chr4_4:65833750-65833769 None:intergenic 45.0%
!!! GTGGTTTTGTCAATTCTGGG+TGG - chr4_4:65833830-65833849 None:intergenic 45.0%
TTAGGGTTAATCGGAGAAGG+TGG + chr4_4:65833878-65833897 Msa0696050:five_prime_UTR 45.0%
TTCTTGGTGGAGCTGTTATC+CGG + chr4_4:65834076-65834095 Msa0696050:CDS 45.0%
CCAAGAGCAAAGGACCAAAA+TGG - chr4_4:65834384-65834403 None:intergenic 45.0%
!! CCATTTTGGTCCTTTGCTCT+TGG + chr4_4:65834381-65834400 Msa0696050:intron 45.0%
CTTTAGACCCACATTCTGAC+TGG + chr4_4:65834697-65834716 Msa0696050:intron 45.0%
TTCGGTTCCAGTCAGAATGT+GGG - chr4_4:65834707-65834726 None:intergenic 45.0%
!! TCACGTGGTGCCAATTGTTT+TGG + chr4_4:65834896-65834915 Msa0696050:intron 45.0%
GAATTGCAACAGCGCTATTC+AGG + chr4_4:65835829-65835848 Msa0696050:CDS 45.0%
AGTGTCATGCTGTCTTTCGA+GGG - chr4_4:65835949-65835968 None:intergenic 45.0%
AAGTGTCATGCTGTCTTTCG+AGG - chr4_4:65835950-65835969 None:intergenic 45.0%
CTCATTCTTGTCAGCCTTGA+GGG - chr4_4:65836415-65836434 None:intergenic 45.0%
TCTCATTCTTGTCAGCCTTG+AGG - chr4_4:65836416-65836435 None:intergenic 45.0%
! AAACTGGTCTCATGAATGCC+AGG + chr4_4:65836581-65836600 Msa0696050:CDS 45.0%
TCAATAGACCCTGAAACACC+AGG - chr4_4:65836642-65836661 None:intergenic 45.0%
!! TCAAAGGATGGGTTATCTGC+TGG + chr4_4:65836807-65836826 Msa0696050:CDS 45.0%
CAGAAGACATTGCTGGAACT+TGG - chr4_4:65836875-65836894 None:intergenic 45.0%
AGATTACGCCTGGTGTTTCA+GGG + chr4_4:65836904-65836923 Msa0696050:CDS 45.0%
GAGAGGAAAGAGAAAGAGGA+AGG + chr4_4:65837010-65837029 Msa0696050:CDS 45.0%
GGTAGAACTTTCTTTCAGCC+GGG - chr4_4:65837096-65837115 None:intergenic 45.0%
GAAAGTTCTACCAGCAACTG+TGG + chr4_4:65837104-65837123 Msa0696050:CDS 45.0%
GGTGAGGTTGTCAAATCTTC+TGG + chr4_4:65837125-65837144 Msa0696050:CDS 45.0%
GCAGTTAATCCAGAGACACA+TGG + chr4_4:65838135-65838154 Msa0696050:CDS 45.0%
TGTCAAAGTCCATGTGTCTC+TGG - chr4_4:65838147-65838166 None:intergenic 45.0%
!! GTAGAACAGCAAAGCATTGG+TGG - chr4_4:65838242-65838261 None:intergenic 45.0%
GGAGTAGAACAGCAAAGCAT+TGG - chr4_4:65838245-65838264 None:intergenic 45.0%
AAAAACTGACGGAGAACAGG+AGG + chr4_4:65838317-65838336 Msa0696050:CDS 45.0%
AATGTTGCAAAGGTAGCCGA+TGG + chr4_4:65838424-65838443 Msa0696050:CDS 45.0%
AAAGCCAAGAAGCCTAGTAC+TGG + chr4_4:65838475-65838494 Msa0696050:CDS 45.0%
!!! ATGTTTTTTTTTTTTTTTTT+TGG - chr4_4:65833591-65833610 None:intergenic 5.0%
!! AAAAAAAAAAAAAAAAACAT+AGG + chr4_4:65833591-65833610 Msa0696050:five_prime_UTR 5.0%
!! ATAATAAATAAATAAAATAG+TGG - chr4_4:65834193-65834212 None:intergenic 5.0%
AGCGTACACGTGTACGAAGA+TGG + chr4_4:65834011-65834030 Msa0696050:exon 50.0%
GCGTACACGTGTACGAAGAT+GGG + chr4_4:65834012-65834031 Msa0696050:exon 50.0%
AGCGGAAGTGATTGTGACGT+GGG + chr4_4:65834035-65834054 Msa0696050:CDS 50.0%
ACATGGGAGGAGCTTCTTCT+TGG + chr4_4:65834060-65834079 Msa0696050:CDS 50.0%
AAGGAGAAGGAGTTCTCCCT+CGG - chr4_4:65834140-65834159 None:intergenic 50.0%
! GGTGTAATAGCGGAAGGAGA+AGG - chr4_4:65834153-65834172 None:intergenic 50.0%
TGGTCCTTTGCTCTTGGGTT+TGG + chr4_4:65834387-65834406 Msa0696050:intron 50.0%
CTTCGGTTCCAGTCAGAATG+TGG - chr4_4:65834708-65834727 None:intergenic 50.0%
GGTTATGGGTAGCATTCACG+TGG + chr4_4:65834881-65834900 Msa0696050:intron 50.0%
AATATGGCACTGCTAGGGCT+TGG + chr4_4:65836040-65836059 Msa0696050:intron 50.0%
AGCAGAGCTTAAGCGAGCTT+TGG + chr4_4:65836089-65836108 Msa0696050:CDS 50.0%
!! TCAAAGGATGGGCTATCTGC+TGG + chr4_4:65836534-65836553 Msa0696050:CDS 50.0%
!! CAAAGGATGGGCTATCTGCT+GGG + chr4_4:65836535-65836554 Msa0696050:CDS 50.0%
CAGAAGACATTGCTGGAACC+TGG - chr4_4:65836602-65836621 None:intergenic 50.0%
AGATCTCGCCTGGTGTTTCA+GGG + chr4_4:65836631-65836650 Msa0696050:CDS 50.0%
GAAGACATGGAGATTACGCC+TGG + chr4_4:65836894-65836913 Msa0696050:CDS 50.0%
GAGATTACGCCTGGTGTTTC+AGG + chr4_4:65836903-65836922 Msa0696050:CDS 50.0%
TTCTACCAGCAACTGTGGTG+AGG + chr4_4:65837109-65837128 Msa0696050:CDS 50.0%
CTGTCGTAAGCATGATAGCC+AGG + chr4_4:65837244-65837263 Msa0696050:CDS 50.0%
! GGCGAGTAGAGATTTGCTCA+AGG + chr4_4:65838049-65838068 Msa0696050:intron 50.0%
ACCACCAGTACTAGGCTTCT+TGG - chr4_4:65838482-65838501 None:intergenic 50.0%
CACATCAAGAAAGCTGTCGG+TGG + chr4_4:65838538-65838557 Msa0696050:CDS 50.0%
CACGTGTACGAAGATGGGAG+CGG + chr4_4:65834017-65834036 Msa0696050:exon 55.0%
GAGCGGAAGTGATTGTGACG+TGG + chr4_4:65834034-65834053 Msa0696050:CDS 55.0%
GCGGAAGTGATTGTGACGTG+GGG + chr4_4:65834036-65834055 Msa0696050:CDS 55.0%
CGGAAGTGATTGTGACGTGG+GGG + chr4_4:65834037-65834056 Msa0696050:CDS 55.0%
TGATTGTGACGTGGGGGACA+TGG + chr4_4:65834043-65834062 Msa0696050:CDS 55.0%
GATTGTGACGTGGGGGACAT+GGG + chr4_4:65834044-65834063 Msa0696050:CDS 55.0%
TGGGAGGAGCTTCTTCTTGG+TGG + chr4_4:65834063-65834082 Msa0696050:CDS 55.0%
TCCTTCCGCTATTACACCCG+AGG + chr4_4:65834155-65834174 Msa0696050:CDS 55.0%
! ACCTCGGGTGTAATAGCGGA+AGG - chr4_4:65834159-65834178 None:intergenic 55.0%
TGGGCCAAACCCAAGAGCAA+AGG - chr4_4:65834394-65834413 None:intergenic 55.0%
! CACTGCTAGGGCTTGGTATG+AGG + chr4_4:65836047-65836066 Msa0696050:intron 55.0%
GAAGACATGGAGATCTCGCC+TGG + chr4_4:65836621-65836640 Msa0696050:CDS 55.0%
GAGATCTCGCCTGGTGTTTC+AGG + chr4_4:65836630-65836649 Msa0696050:CDS 55.0%
TCGGTTGACCCTGAAACACC+AGG - chr4_4:65836915-65836934 None:intergenic 55.0%
GACAACCTCACCACAGTTGC+TGG - chr4_4:65837117-65837136 None:intergenic 55.0%
GGTTACAAGGGCGGACACTT+GGG - chr4_4:65838396-65838415 None:intergenic 55.0%
TGGTTACAAGGGCGGACACT+TGG - chr4_4:65838397-65838416 None:intergenic 55.0%
! TTATTTGAGACCCCCGAGGC+AGG - chr4_4:65838457-65838476 None:intergenic 55.0%
!! GGCTTTATTTGAGACCCCCG+AGG - chr4_4:65838461-65838480 None:intergenic 55.0%
! GCCAAGAAGCCTAGTACTGG+TGG + chr4_4:65838478-65838497 Msa0696050:CDS 55.0%
! AACGTTAGCACCGGGTGCGT+AGG + chr4_4:65833943-65833962 Msa0696050:five_prime_UTR 60.0%
! AGCACCGGGTGCGTAGGATT+AGG + chr4_4:65833949-65833968 Msa0696050:five_prime_UTR 60.0%
GGCTCCTAATCCTACGCACC+CGG - chr4_4:65833956-65833975 None:intergenic 60.0%
GGTGGAGCTGTTATCCGGCA+CGG + chr4_4:65834081-65834100 Msa0696050:CDS 60.0%
ACCAATCACCAGTGCCGTGC+CGG - chr4_4:65834098-65834117 None:intergenic 60.0%
! TGGTGATTGGTCCGTCGTCG+CGG + chr4_4:65834107-65834126 Msa0696050:CDS 60.0%
TGTGACGTGGGGGACATGGG+AGG + chr4_4:65834047-65834066 Msa0696050:CDS 65.0%
GCTGTTATCCGGCACGGCAC+TGG + chr4_4:65834087-65834106 Msa0696050:CDS 65.0%
!! TCCGGCACGGCACTGGTGAT+TGG + chr4_4:65834094-65834113 Msa0696050:CDS 65.0%
! TGATTGGTCCGTCGTCGCGG+CGG + chr4_4:65834110-65834129 Msa0696050:CDS 65.0%
CGAGGCAGGATCGCTGCCAT+CGG - chr4_4:65838443-65838462 None:intergenic 65.0%
CGATGGCAGCGATCCTGCCT+CGG + chr4_4:65838441-65838460 Msa0696050:CDS 65.0%
GATGGCAGCGATCCTGCCTC+GGG + chr4_4:65838442-65838461 Msa0696050:CDS 65.0%
ATGGCAGCGATCCTGCCTCG+GGG + chr4_4:65838443-65838462 Msa0696050:CDS 65.0%
TGGCAGCGATCCTGCCTCGG+GGG + chr4_4:65838444-65838463 Msa0696050:CDS 70.0%
TCGGAGCTCCGCCGCGACGA+CGG - chr4_4:65834121-65834140 None:intergenic 75.0%
TCGTCGCGGCGGAGCTCCGA+GGG + chr4_4:65834121-65834140 Msa0696050:CDS 75.0%
! GTCGTCGCGGCGGAGCTCCG+AGG + chr4_4:65834120-65834139 Msa0696050:CDS 80.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 65833507 65838801 65833507 ID=Msa0696050;Name=Msa0696050
chr4_4 mRNA 65833507 65838801 65833507 ID=Msa0696050-mRNA-1;Parent=Msa0696050;Name=Msa0696050-mRNA-1;_AED=0.05;_eAED=0.05;_QI=523|1|1|1|1|1|5|162|557
chr4_4 exon 65833507 65834176 65833507 ID=Msa0696050-mRNA-1:exon:19053;Parent=Msa0696050-mRNA-1
chr4_4 exon 65835808 65835857 65835808 ID=Msa0696050-mRNA-1:exon:19054;Parent=Msa0696050-mRNA-1
chr4_4 exon 65836056 65836133 65836056 ID=Msa0696050-mRNA-1:exon:19055;Parent=Msa0696050-mRNA-1
chr4_4 exon 65836389 65837265 65836389 ID=Msa0696050-mRNA-1:exon:19056;Parent=Msa0696050-mRNA-1
chr4_4 exon 65838118 65838801 65838118 ID=Msa0696050-mRNA-1:exon:19057;Parent=Msa0696050-mRNA-1
chr4_4 five_prime_UTR 65833507 65834029 65833507 ID=Msa0696050-mRNA-1:five_prime_utr;Parent=Msa0696050-mRNA-1
chr4_4 CDS 65834030 65834176 65834030 ID=Msa0696050-mRNA-1:cds;Parent=Msa0696050-mRNA-1
chr4_4 CDS 65835808 65835857 65835808 ID=Msa0696050-mRNA-1:cds;Parent=Msa0696050-mRNA-1
chr4_4 CDS 65836056 65836133 65836056 ID=Msa0696050-mRNA-1:cds;Parent=Msa0696050-mRNA-1
chr4_4 CDS 65836389 65837265 65836389 ID=Msa0696050-mRNA-1:cds;Parent=Msa0696050-mRNA-1
chr4_4 CDS 65838118 65838639 65838118 ID=Msa0696050-mRNA-1:cds;Parent=Msa0696050-mRNA-1
chr4_4 three_prime_UTR 65838640 65838801 65838640 ID=Msa0696050-mRNA-1:three_prime_utr;Parent=Msa0696050-mRNA-1
Gene Sequence

>Msa0696050

ATGGGAGCGGAAGTGATTGTGACGTGGGGGACATGGGAGGAGCTTCTTCTTGGTGGAGCTGTTATCCGGCACGGCACTGGTGATTGGTCCGTCGTCGCGGCGGAGCTCCGAGGGAGAACTCCTTCTCCTTCCGCTATTACACCCGAGGTCTGTAAAGCCAAATATGAAGAATTGCAACAGCGCTATTCAGGCTGCACGGCTTGGTATGAGGAGCTTAAGAAGAGAAGAGTAGCAGAGCTTAAGCGAGCTTTGGAGAAATCAGAAGATTCAATTGGGTCTCTTGAATCAAAGCTTGAATCCCTCAAGGCTGACAAGAATGAGAAAATAGATGATTGTCTTGTTGACAACAACTCAGTTGGACCAGAATTAGATGTTCCTTCACAGAAATTAGAGAGAGTTGAATCTTCTACTAAAGAGTTGTCAAAGGATGGGCTATCTGCTGGGAGTTTTACACATCAAACCGATACAAACTGGTCTCATGAATGCCAGGTTCCAGCAATGTCTTCTGAAGACATGGAGATCTCGCCTGGTGTTTCAGGGTCTATTGAACATGAGAAAGTTTTGAATATAGATAAGTTGACAGATACAGCTGGGAAAAGAGATGATTGTCATGTTGACAACGACTCAGTTGAACCAGAATCACATGTTCCTTCACAGAAATTGGAGAGAGTTGAATCTTCAACTAAAGAGACGTCAAAGGATGGGTTATCTGCTGGTAGTTTTACACATCAAACCCAGAAAAACTGGTCTCAAGAATGCCAAGTTCCAGCAATGTCTTCTGAAGACATGGAGATTACGCCTGGTGTTTCAGGGTCAACCGAACATGAGAAAGTTTTGAATGTAGATAAGTTGAAAGAGACTGTATATGAAGGACATGGAGGGTGTTTTAAAAAAAGGAGAGGAAAGAGAAAGAGGAAGGATTGTGCCAGAAATATTAATGAAGCGAGTGTGAGAGAAAGTGATTTTTCAATTGATGTGTCCCGGCTGAAAGAAAGTTCTACCAGCAACTGTGGTGAGGTTGTCAAATCTTCTGGTGTAACTGAGGAGAACACGAACTTGAAAAAGGATGGAACGAAATATCTGATGGCGATTTTAGATTCTGTTTTGGAAATTAAAGGTGCTTCTTGCTTCTGTCGTAAGCATGATAGCCAGAAGCGACAAAGGTACAAGCAGTTAATCCAGAGACACATGGACTTTGACACTATAAGGTCAAGAATTAGCAACAAAACAATTGATTCAGTGGTGCAACTTTTCAGAGACATGTTTCTATTGACCACCAATGCTTTGCTGTTCTACTCCAAGAACACCCGTCAATATAAGTCTGCACTACTCATGAGAGATATTGTCAAAGAAAAACTGACGGAGAACAGGAGGAATGTCATACATTCTAATGTCGACATTGTCTGCGCTACTCCTTCTTTGAAAGTCCCAAGTGTCCGCCCTTGTAACCAGAAGATTAATGTTGCAAAGGTAGCCGATGGCAGCGATCCTGCCTCGGGGGTCTCAAATAAAGCCAAGAAGCCTAGTACTGGTGGTAGTAAAGAGAATTCTCCGTCTTCGGTGAAATCCTTACACATCAAGAAAGCTGTCGGTGGATCTAAAAAACATGAACCTGCAACTCCGAATCTTATGAAGGAAATGAAGGAAAAGAAAAGACGGAGAACTAGGTTATGA
Protein sequence

>Msa0696050

MGAEVIVTWGTWEELLLGGAVIRHGTGDWSVVAAELRGRTPSPSAITPEVCKAKYEELQQRYSGCTAWYEELKKRRVAELKRALEKSEDSIGSLESKLESLKADKNEKIDDCLVDNNSVGPELDVPSQKLERVESSTKELSKDGLSAGSFTHQTDTNWSHECQVPAMSSEDMEISPGVSGSIEHEKVLNIDKLTDTAGKRDDCHVDNDSVEPESHVPSQKLERVESSTKETSKDGLSAGSFTHQTQKNWSQECQVPAMSSEDMEITPGVSGSTEHEKVLNVDKLKETVYEGHGGCFKKRRGKRKRKDCARNINEASVRESDFSIDVSRLKESSTSNCGEVVKSSGVTEENTNLKKDGTKYLMAILDSVLEIKGASCFCRKHDSQKRQRYKQLIQRHMDFDTIRSRISNKTIDSVVQLFRDMFLLTTNALLFYSKNTRQYKSALLMRDIVKEKLTENRRNVIHSNVDIVCATPSLKVPSVRPCNQKINVAKVADGSDPASGVSNKAKKPSTGGSKENSPSSVKSLHIKKAVGGSKKHEPATPNLMKEMKEKKRRRTRL*