AlfalfaGEDB | Msa0696680

M. sativa cultivar zhongmu-4 / Msa0696680

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0696680	XP_024637268.1	74.879	621	135	8	1	609	23	634	0.0	920

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0696680	sp\|Q9ASS4\|Y5838_ARATH	39.604	606	289	13	27	588	27	599	2.47e-135	411

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0696680	A0A396IAH3	74.879	621	135	8	1	609	23	634	0.0	920

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0696680	MtrunA17_Chr4g0049181	74.879	621	135	8	1	609	23	634	0.0	920
Msa0696680	MtrunA17_Chr4g0049201	80.102	392	73	2	211	602	47	433	0.0	625
Msa0696680	MtrunA17_Chr4g0049161	77.707	314	68	2	297	609	1	313	2.05e-174	497
Msa0696680	MtrunA17_Chr7g0249841	44.940	583	254	13	30	578	31	580	7.06e-158	466
Msa0696680	MtrunA17_Chr8g0337671	45.051	586	252	14	30	578	32	584	2.20e-152	452
Msa0696680	MtrunA17_Chr6g0452221	35.065	616	329	13	9	588	7	587	2.01e-105	330
Msa0696680	MtrunA17_Chr4g0049171	55.285	246	94	6	43	274	35	278	5.35e-79	251
Msa0696680	MtrunA17_Chr5g0423761	43.557	388	178	13	213	578	5	373	1.51e-76	249
Msa0696680	MtrunA17_Chr4g0049211	48.214	280	119	7	314	578	3	271	3.58e-76	244
Msa0696680	MtrunA17_Chr3g0129391	31.794	563	294	18	101	609	651	1177	1.66e-62	224

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0696680	AT5G48380.1	39.604	606	289	13	27	588	27	599	2.51e-136	411
Msa0696680	AT3G28450.1	34.483	609	317	13	13	582	17	582	8.00e-105	329
Msa0696680	AT1G69990.1	34.899	596	325	17	13	578	4	566	1.90e-100	318
Msa0696680	AT1G27190.1	36.760	574	316	12	31	578	27	579	2.34e-98	312
Msa0696680	AT5G45780.1	29.054	592	339	17	22	578	30	575	1.77e-62	218
Msa0696680	AT4G30520.1	30.354	593	356	18	3	571	9	568	3.58e-62	218
Msa0696680	AT5G45780.2	28.571	581	326	16	37	578	2	532	3.88e-61	213
Msa0696680	AT3G13380.1	32.943	513	278	16	101	571	640	1128	6.09e-61	219
Msa0696680	AT3G13380.1	39.474	114	66	1	81	191	307	420	1.68e-14	77.8
Msa0696680	AT3G13380.1	32.836	134	66	2	81	190	407	540	4.66e-12	69.7

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Find 137 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCATTAAGAATTCAT+TGG	0.408659	4_4:-66650068	Msa0696680:CDS
AAAGACTGACATCAACAATA+TGG	0.411538	4_4:-66649161	Msa0696680:CDS
AAAGATGGGAATGATGTACC+AGG	0.582800	4_4:-66649079	Msa0696680:CDS
AAATAATTTCTTACAAAACT+GGG	0.523234	4_4:-66650038	Msa0696680:CDS
AAATCTCAAACTATCTAACA+TGG	0.543158	4_4:-66649936	Msa0696680:CDS
AAATTAAACTCTAACCTGGT+TGG	0.518457	4_4:+66650735	None:intergenic
AAATTTGGCCTCTCCAAAGT+TGG	0.476273	4_4:+66648681	None:intergenic
AACAGCTAGTAACTGACCAT+TGG	0.499614	4_4:+66649047	None:intergenic
AACGCACAAAGAAAGCAAAG+AGG	0.718957	4_4:-66649306	Msa0696680:intron
AAGAAGGATGTCTATGACTT+TGG	0.310854	4_4:-66648604	Msa0696680:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCCTAATGAATATTCAGAG+TGG	-	chr4_4:66648346-66648365	Msa0696680:CDS	30.0%
AAATTAAACTCTAACCTGGT+TGG	+	chr4_4:66648477-66648496	None:intergenic	30.0%
AGTGAGTTAAGAAGAGAAAT+TGG	+	chr4_4:66648777-66648796	None:intergenic	30.0%
ACTCCATGACATTATAATCT+TGG	-	chr4_4:66648849-66648868	Msa0696680:CDS	30.0%
TGACCAAGATTATAATGTCA+TGG	+	chr4_4:66648855-66648874	None:intergenic	30.0%
TCACTAAATCCTTTGGTATT+TGG	-	chr4_4:66648900-66648919	Msa0696680:CDS	30.0%
ACAGAAAATCCAAATACCAA+AGG	+	chr4_4:66648912-66648931	None:intergenic	30.0%
TGAGGCACAAGATTAATATT+TGG	+	chr4_4:66649072-66649091	None:intergenic	30.0%
GTCTTCCAATGAATTCTTAA+TGG	+	chr4_4:66649149-66649168	None:intergenic	30.0%
GGTTTCATATGCAAATTTAC+TGG	-	chr4_4:66649214-66649233	Msa0696680:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	66648270	66650961	66648270	ID=Msa0696680;Name=Msa0696680
chr4_4	mRNA	66648270	66650961	66648270	ID=Msa0696680-mRNA-1;Parent=Msa0696680;Name=Msa0696680-mRNA-1;_AED=0.11;_eAED=0.11;_QI=214\|1\|0.66\|1\|0.5\|0.33\|3\|0\|609
chr4_4	exon	66648270	66649211	66648270	ID=Msa0696680-mRNA-1:exon:19407;Parent=Msa0696680-mRNA-1
chr4_4	exon	66649307	66650196	66649307	ID=Msa0696680-mRNA-1:exon:19406;Parent=Msa0696680-mRNA-1
chr4_4	exon	66650750	66650961	66650750	ID=Msa0696680-mRNA-1:exon:19405;Parent=Msa0696680-mRNA-1
chr4_4	five_prime_UTR	66650750	66650961	66650750	ID=Msa0696680-mRNA-1:five_prime_utr;Parent=Msa0696680-mRNA-1
chr4_4	five_prime_UTR	66650195	66650196	66650195	ID=Msa0696680-mRNA-1:five_prime_utr;Parent=Msa0696680-mRNA-1
chr4_4	CDS	66649307	66650194	66649307	ID=Msa0696680-mRNA-1:cds;Parent=Msa0696680-mRNA-1
chr4_4	CDS	66648270	66649211	66648270	ID=Msa0696680-mRNA-1:cds;Parent=Msa0696680-mRNA-1

Gene Sequence

>Msa0696680

ATGGCTTTTGAAATAAAAAGGGATATTCTTTTCCAAATATTAATCTTGTGCCTCAGTACGTTAATGACTAGTCAAAGTGCTAATAATACTGATATCTTCTGTTTAAAATCCATTAAGAATTCATTGGAAGACCCAAATAATTTCTTACAAAACTGGGACTTCAACAACAGAACAGAAGGTTTCATATGCAAATTTACTGGTGTTGAATGCTGGCATCCAGATGAAAATAGAGTACTAAATCTCAAACTATCTAACATGGGGTTGAAGGGTCAGTTTCCACGGGGACTTGAAAATTGCTCTTCGTTGACGGGCTTAGACCTTTCGCTCAATGACCTCTCGGGATCCATCCCATCTGATATTTCAAGGATACTCACATTTGTTACCAACCTTGATCTCTCTAGTAACAAATTCACCGGTGAAATTCCCACAACTATAGTAAACTGCACTTACCTTCACACTCTTAAACTTGAGAACAATATGTTAAGCGGCGAAATTCCAAAAGGACTTGGCCAACTTAGTAGAATTAAAACAATTTCTGTTGCTAACAATCAATTGTGTGGGCAAGTGCCGGTGTTCGACAACTTCAGTGAAGGAGATTTTAACTATGCTAACAATAGTGGAGTTTGTGGCAAGCCCAACGATTTCCTCCAATCATTCAAGAGTGGTCTTATTGTTGGATATGTTTTTTCACTCACATGTTATGTTATGCTGACATGTATGTTCTACTCCAAATGTGTGCAACTTACGAAGAAAGAAAACAATCACATAAACAAAGCTAATGAATTTGGCAAATGTATTTGCTCCATCGTCAGCAGGAGGTCAAGAGTGGTAGCTAATCATGTGCACGAATATTTACATCCGTGGCTAACGCACAAAGAAAGCAAAGAGATGCATCCACAAATCACTGCATTATTGGAAAGACTGACATCAACAATATGGTTCGAAGAACTGCGCGACGCAACTGACTGTTTCGCAATGGACAGTGCCATTGGGGTAGGAAAGATGGGAATGATGTACCAGGGAAGACTACCCAATGGTCAGTTACTAGCTGTTAAGAGACTGTTTGACTCTCAGTTGTTTAAAATGCAGTTCCTTTTAGAAACAACGATTATGGGTAGGTACAGACACAAAAATATAGTTCCCATGCTTGGATTCTGCATTGAAGGAAAGGAAAGGCTTTTGGCATATGAATACATGTCAAATGGAAGGCTTTCCAAATGGCTGCACCCTTTGAAAAGTGAAGTCATCAGACTGAAATGGCCTGAGAGGGTCAACATTGCACTTGGAATAGCAAGAGGATTATCATGGCTCCATCATAGCTGTGATTTGGGCATAGCGCATTTTAATATATGTTCAGAATGCATATTGCTAGATGAGAACTTTGAACCCAAAATATCCAACTTTGGAGAGGCCAAATTTATGAATCCCAACATTGAGGATGATCTTGGCATGATGTTTAAAGTAAACGATGGAAAGAAGGATGTCTATGACTTTGGAAGTGTGCTTTTTGAACTGATTACAGGGAAAACATATAACGAACTGAATCGTTTATTCACCACCATCACTAATCTCTATGAAAACCCTTCGAATTTTTACAATACCATTGATAAATCTTTGACTGCTGAAGGTTTTGAAAACGAAGTATGTACTCTCCTAAAGATTGCTTGTGAGTGTGTTAAACCTATATACCAAAGGCCAACAATGCTTGAAGTTTACAATAATTTGAGCAATGTAAGGAAGACACAGTATGGCTCTAGTGATGATTCTAACTCAGCCGGTGTATCACAAATTGATTCTGGAATCATTGCAGATGAAATTACCGAGTTATAA

Protein sequence

>Msa0696680

MAFEIKRDILFQILILCLSTLMTSQSANNTDIFCLKSIKNSLEDPNNFLQNWDFNNRTEGFICKFTGVECWHPDENRVLNLKLSNMGLKGQFPRGLENCSSLTGLDLSLNDLSGSIPSDISRILTFVTNLDLSSNKFTGEIPTTIVNCTYLHTLKLENNMLSGEIPKGLGQLSRIKTISVANNQLCGQVPVFDNFSEGDFNYANNSGVCGKPNDFLQSFKSGLIVGYVFSLTCYVMLTCMFYSKCVQLTKKENNHINKANEFGKCICSIVSRRSRVVANHVHEYLHPWLTHKESKEMHPQITALLERLTSTIWFEELRDATDCFAMDSAIGVGKMGMMYQGRLPNGQLLAVKRLFDSQLFKMQFLLETTIMGRYRHKNIVPMLGFCIEGKERLLAYEYMSNGRLSKWLHPLKSEVIRLKWPERVNIALGIARGLSWLHHSCDLGIAHFNICSECILLDENFEPKISNFGEAKFMNPNIEDDLGMMFKVNDGKKDVYDFGSVLFELITGKTYNELNRLFTTITNLYENPSNFYNTIDKSLTAEGFENEVCTLLKIACECVKPIYQRPTMLEVYNNLSNVRKTQYGSSDDSNSAGVSQIDSGIIADEITEL*