Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0696900 | XP_039685680.1 | 84.981 | 799 | 100 | 3 | 1 | 779 | 1 | 799 | 0.0 | 1393 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0696900 | sp|Q9SZL8|FRS5_ARATH | 27.925 | 641 | 382 | 14 | 32 | 665 | 70 | 637 | 1.53e-69 | 248 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0696900 | D3YBB9 | 76.332 | 807 | 174 | 4 | 1 | 798 | 49 | 847 | 0.0 | 1282 |
Gene ID | Type | Classification |
---|---|---|
Msa0696900 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0696900 | MtrunA17_Chr3g0088371 | 83.152 | 184 | 28 | 1 | 618 | 798 | 1 | 184 | 8.76e-103 | 315 |
Msa0696900 | MtrunA17_Chr2g0324011 | 30.709 | 635 | 364 | 12 | 36 | 665 | 8 | 571 | 3.61e-101 | 325 |
Msa0696900 | MtrunA17_Chr3g0082121 | 31.693 | 691 | 384 | 17 | 41 | 727 | 49 | 655 | 1.24e-100 | 327 |
Msa0696900 | MtrunA17_Chr1g0202341 | 29.606 | 635 | 366 | 17 | 34 | 662 | 50 | 609 | 5.04e-80 | 271 |
Msa0696900 | MtrunA17_Chr8g0363841 | 28.776 | 629 | 375 | 13 | 40 | 665 | 22 | 580 | 5.39e-75 | 257 |
Msa0696900 | MtrunA17_Chr1g0203721 | 26.026 | 780 | 452 | 20 | 1 | 739 | 16 | 711 | 3.70e-73 | 256 |
Msa0696900 | MtrunA17_Chr2g0296781 | 27.688 | 679 | 405 | 20 | 39 | 708 | 1 | 602 | 9.41e-69 | 241 |
Msa0696900 | MtrunA17_Chr5g0448761 | 25.318 | 707 | 449 | 14 | 31 | 728 | 56 | 692 | 2.10e-68 | 241 |
Msa0696900 | MtrunA17_Chr6g0458391 | 26.984 | 630 | 357 | 15 | 41 | 662 | 231 | 765 | 1.82e-65 | 233 |
Msa0696900 | MtrunA17_Chr6g0477261 | 29.412 | 527 | 314 | 14 | 180 | 699 | 7 | 482 | 6.39e-65 | 229 |
Msa0696900 | MtrunA17_Chr1g0164591 | 35.312 | 320 | 192 | 4 | 131 | 448 | 1 | 307 | 1.10e-62 | 213 |
Msa0696900 | MtrunA17_Chr2g0287651 | 25.755 | 629 | 387 | 13 | 39 | 662 | 79 | 632 | 8.97e-61 | 221 |
Msa0696900 | MtrunA17_Chr5g0441581 | 24.967 | 757 | 460 | 21 | 32 | 773 | 26 | 689 | 5.59e-59 | 213 |
Msa0696900 | MtrunA17_Chr5g0440451 | 24.542 | 709 | 426 | 17 | 34 | 721 | 42 | 662 | 7.78e-56 | 207 |
Msa0696900 | MtrunA17_Chr7g0258861 | 35.948 | 306 | 172 | 6 | 36 | 336 | 8 | 294 | 5.97e-54 | 189 |
Msa0696900 | MtrunA17_Chr1g0207551 | 24.821 | 697 | 430 | 17 | 31 | 718 | 30 | 641 | 6.39e-54 | 200 |
Msa0696900 | MtrunA17_Chr1g0172971 | 81.197 | 117 | 21 | 1 | 1 | 116 | 1 | 117 | 9.81e-54 | 195 |
Msa0696900 | MtrunA17_Chr2g0329031 | 25.776 | 644 | 382 | 18 | 23 | 658 | 2 | 557 | 2.04e-53 | 198 |
Msa0696900 | MtrunA17_Chr1g0198761 | 27.147 | 652 | 379 | 19 | 26 | 660 | 38 | 610 | 4.34e-53 | 197 |
Msa0696900 | MtrunA17_Chr1g0196541 | 24.880 | 627 | 397 | 16 | 39 | 662 | 1 | 556 | 1.85e-52 | 195 |
Msa0696900 | MtrunA17_Chr3g0118611 | 27.634 | 503 | 304 | 10 | 221 | 719 | 111 | 557 | 3.51e-52 | 194 |
Msa0696900 | MtrunA17_Chr3g0080351 | 23.724 | 725 | 449 | 15 | 34 | 752 | 75 | 701 | 1.38e-48 | 185 |
Msa0696900 | MtrunA17_Chr2g0287061 | 24.066 | 669 | 377 | 19 | 41 | 694 | 189 | 741 | 4.71e-48 | 183 |
Msa0696900 | MtrunA17_Chr2g0290391 | 26.012 | 642 | 372 | 19 | 38 | 660 | 54 | 611 | 2.29e-47 | 179 |
Msa0696900 | MtrunA17_Chr1g0203051 | 22.373 | 590 | 389 | 8 | 50 | 637 | 94 | 616 | 7.67e-47 | 177 |
Msa0696900 | MtrunA17_Chr2g0276841 | 25.984 | 635 | 374 | 21 | 49 | 669 | 84 | 636 | 3.76e-45 | 173 |
Msa0696900 | MtrunA17_Chr5g0448511 | 25.664 | 452 | 282 | 10 | 216 | 665 | 1 | 400 | 3.57e-44 | 167 |
Msa0696900 | MtrunA17_Chr5g0431001 | 28.160 | 451 | 279 | 12 | 40 | 473 | 66 | 488 | 1.89e-42 | 162 |
Msa0696900 | MtrunA17_Chr2g0291591 | 26.157 | 497 | 315 | 13 | 16 | 499 | 44 | 501 | 2.42e-42 | 162 |
Msa0696900 | MtrunA17_Chr2g0291581 | 23.923 | 627 | 396 | 14 | 38 | 662 | 74 | 621 | 9.24e-41 | 160 |
Msa0696900 | MtrunA17_Chr6g0475591 | 91.781 | 73 | 6 | 0 | 188 | 260 | 1 | 73 | 1.32e-40 | 143 |
Msa0696900 | MtrunA17_Chr2g0294841 | 26.640 | 503 | 316 | 15 | 3 | 482 | 7 | 479 | 1.57e-35 | 144 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0696900 | AT4G38180.1 | 27.925 | 641 | 382 | 14 | 32 | 665 | 70 | 637 | 1.55e-70 | 248 |
Msa0696900 | AT4G15090.1 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 3.99e-59 | 216 |
Msa0696900 | AT4G15090.5 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 3.99e-59 | 216 |
Msa0696900 | AT4G15090.3 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 3.99e-59 | 216 |
Msa0696900 | AT4G15090.2 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 3.99e-59 | 216 |
Msa0696900 | AT4G15090.4 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 3.99e-59 | 216 |
Msa0696900 | AT2G27110.2 | 25.070 | 714 | 423 | 19 | 10 | 719 | 29 | 634 | 9.77e-54 | 201 |
Msa0696900 | AT2G27110.1 | 25.070 | 714 | 423 | 19 | 10 | 719 | 29 | 634 | 9.77e-54 | 201 |
Msa0696900 | AT2G27110.3 | 27.308 | 509 | 313 | 11 | 213 | 719 | 36 | 489 | 4.75e-53 | 197 |
Msa0696900 | AT3G06250.2 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 4.46e-52 | 194 |
Msa0696900 | AT3G06250.1 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 4.46e-52 | 194 |
Msa0696900 | AT3G06250.3 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 4.46e-52 | 194 |
Msa0696900 | AT1G76320.3 | 24.815 | 677 | 413 | 19 | 50 | 720 | 12 | 598 | 6.75e-50 | 187 |
Msa0696900 | AT1G76320.2 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 1.70e-49 | 187 |
Msa0696900 | AT1G76320.1 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 1.74e-49 | 187 |
Msa0696900 | AT1G76320.4 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 1.74e-49 | 187 |
Msa0696900 | AT3G22170.2 | 22.466 | 730 | 449 | 17 | 34 | 753 | 69 | 691 | 1.79e-47 | 182 |
Msa0696900 | AT3G22170.1 | 22.466 | 730 | 449 | 17 | 34 | 753 | 69 | 691 | 1.79e-47 | 182 |
Msa0696900 | AT5G18960.2 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 2.20e-46 | 178 |
Msa0696900 | AT5G18960.1 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 2.20e-46 | 178 |
Msa0696900 | AT4G38170.1 | 24.532 | 481 | 295 | 13 | 235 | 703 | 24 | 448 | 8.89e-44 | 167 |
Msa0696900 | AT1G10240.2 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 8.27e-42 | 163 |
Msa0696900 | AT1G10240.1 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 8.27e-42 | 163 |
Msa0696900 | AT5G28530.1 | 24.100 | 639 | 388 | 17 | 40 | 660 | 60 | 619 | 1.31e-41 | 162 |
Msa0696900 | AT5G28530.3 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 7.46e-41 | 160 |
Msa0696900 | AT5G28530.2 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 7.46e-41 | 160 |
Msa0696900 | AT2G32250.5 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 2.63e-39 | 156 |
Msa0696900 | AT2G32250.2 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 4.39e-39 | 156 |
Msa0696900 | AT2G32250.4 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 4.39e-39 | 156 |
Msa0696900 | AT2G32250.6 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 6.22e-39 | 155 |
Msa0696900 | AT2G32250.1 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 6.22e-39 | 155 |
Msa0696900 | AT2G32250.3 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 6.22e-39 | 155 |
Msa0696900 | AT2G32250.7 | 23.446 | 708 | 408 | 18 | 41 | 743 | 3 | 581 | 2.78e-38 | 153 |
Msa0696900 | AT2G32250.8 | 23.462 | 699 | 401 | 18 | 50 | 743 | 12 | 581 | 3.21e-38 | 153 |
Msa0696900 | AT1G80010.1 | 23.913 | 644 | 385 | 23 | 41 | 662 | 101 | 661 | 1.73e-36 | 147 |
Msa0696900 | AT1G52520.1 | 22.080 | 625 | 407 | 16 | 41 | 662 | 91 | 638 | 3.35e-33 | 137 |
Msa0696900 | AT4G19990.1 | 28.731 | 268 | 184 | 4 | 219 | 483 | 106 | 369 | 2.31e-27 | 119 |
Msa0696900 | AT4G19990.1 | 35.338 | 133 | 72 | 3 | 591 | 721 | 438 | 558 | 2.22e-12 | 71.2 |
Msa0696900 | AT4G19990.5 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.41e-27 | 119 |
Msa0696900 | AT4G19990.5 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.36e-12 | 71.2 |
Msa0696900 | AT4G19990.7 | 28.731 | 268 | 184 | 4 | 219 | 483 | 177 | 440 | 2.63e-27 | 119 |
Msa0696900 | AT4G19990.7 | 35.338 | 133 | 72 | 3 | 591 | 721 | 509 | 629 | 2.65e-12 | 71.2 |
Msa0696900 | AT4G19990.3 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.03e-27 | 119 |
Msa0696900 | AT4G19990.3 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.45e-12 | 71.2 |
Msa0696900 | AT4G19990.4 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.03e-27 | 119 |
Msa0696900 | AT4G19990.4 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.45e-12 | 71.2 |
Msa0696900 | AT4G19990.6 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.49e-27 | 118 |
Msa0696900 | AT4G19990.6 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.26e-12 | 71.2 |
Msa0696900 | AT4G19990.2 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.49e-27 | 118 |
Msa0696900 | AT4G19990.2 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.26e-12 | 71.2 |
Msa0696900 | AT5G28530.4 | 21.781 | 629 | 352 | 20 | 40 | 660 | 60 | 556 | 1.26e-22 | 103 |
Msa0696900 | AT5G28530.5 | 21.622 | 629 | 349 | 21 | 40 | 660 | 60 | 552 | 8.03e-22 | 101 |
Find 124 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 4_4:+66919113 | Msa0696900:CDS |
TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 4_4:+66918804 | Msa0696900:CDS |
AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 4_4:-66919939 | None:intergenic |
CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 4_4:+66919071 | Msa0696900:CDS |
CAACAAGATTATGCTCTATT+TGG | 0.198611 | 4_4:+66918020 | Msa0696900:CDS |
TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 4_4:+66918523 | Msa0696900:intron |
CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 4_4:+66918556 | Msa0696900:CDS |
TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 4_4:-66918650 | None:intergenic |
TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 4_4:-66919933 | None:intergenic |
AATCAGATTTCGACTACAAT+TGG | 0.318540 | 4_4:+66918845 | Msa0696900:CDS |
TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 4_4:+66919785 | Msa0696900:CDS |
ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 4_4:-66918668 | None:intergenic |
GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 4_4:-66918070 | None:intergenic |
TTGGTTTGAATATTATCTTC+TGG | 0.345646 | 4_4:+66920182 | Msa0696900:three_prime_UTR |
TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 4_4:-66920001 | None:intergenic |
GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 4_4:+66919368 | Msa0696900:CDS |
TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 4_4:+66918945 | Msa0696900:CDS |
CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 4_4:+66919777 | Msa0696900:CDS |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 4_4:+66918077 | Msa0696900:CDS |
ACCGAACAAACAATAAATAT+CGG | 0.389395 | 4_4:+66918069 | Msa0696900:CDS |
TTTCAATTTATCATATCTAA+TGG | 0.390380 | 4_4:+66917157 | None:intergenic |
GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 4_4:+66918944 | Msa0696900:CDS |
GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 4_4:-66919661 | None:intergenic |
TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 4_4:-66917540 | None:intergenic |
AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 4_4:+66919925 | Msa0696900:CDS |
TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 4_4:-66919915 | None:intergenic |
TTCCTTCAAATACTATTATG+AGG | 0.399583 | 4_4:+66919245 | Msa0696900:CDS |
GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 4_4:+66919810 | Msa0696900:CDS |
TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 4_4:+66917311 | Msa0696900:CDS |
CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 4_4:+66919493 | Msa0696900:CDS |
GATTATGATCTTCAAACCTT+GGG | 0.413114 | 4_4:-66919416 | None:intergenic |
ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 4_4:+66917382 | Msa0696900:CDS |
CGATTATGATCTTCAAACCT+TGG | 0.425681 | 4_4:-66919417 | None:intergenic |
CGTTATGTTTGTAACAAAGA+AGG | 0.427485 | 4_4:+66917465 | Msa0696900:CDS |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 4_4:+66917717 | Msa0696900:CDS |
AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 4_4:+66917599 | Msa0696900:CDS |
TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 4_4:-66918661 | None:intergenic |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 4_4:+66917582 | Msa0696900:CDS |
CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 4_4:-66919594 | None:intergenic |
GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 4_4:+66917747 | Msa0696900:CDS |
ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 4_4:+66917236 | Msa0696900:CDS |
TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 4_4:+66918735 | Msa0696900:CDS |
GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 4_4:+66918899 | Msa0696900:CDS |
ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 4_4:+66919494 | Msa0696900:CDS |
AATTCTTGATTGTTATGCAT+TGG | 0.467731 | 4_4:+66920163 | Msa0696900:three_prime_UTR |
ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 4_4:+66917431 | Msa0696900:CDS |
GGGTTGTCACAGTCGACATT+GGG | 0.480993 | 4_4:+66919451 | Msa0696900:CDS |
GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 4_4:+66917792 | Msa0696900:CDS |
CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 4_4:-66919247 | None:intergenic |
TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 4_4:-66917576 | None:intergenic |
TTTAATTATGCATATAACAC+TGG | 0.485542 | 4_4:+66917369 | Msa0696900:CDS |
CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 4_4:+66919886 | Msa0696900:CDS |
TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 4_4:+66917860 | Msa0696900:CDS |
CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 4_4:-66917687 | None:intergenic |
CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 4_4:+66917425 | Msa0696900:CDS |
TATGAGGAGGACACAACAAA+AGG | 0.490908 | 4_4:+66919261 | Msa0696900:CDS |
ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 4_4:-66918536 | None:intergenic |
ATCAGATTTCGACTACAATT+GGG | 0.491708 | 4_4:+66918846 | Msa0696900:CDS |
CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 4_4:+66917873 | Msa0696900:CDS |
ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 4_4:+66919085 | Msa0696900:CDS |
GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 4_4:-66919165 | None:intergenic |
GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 4_4:+66917779 | Msa0696900:CDS |
TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 4_4:-66917965 | None:intergenic |
GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 4_4:+66919885 | Msa0696900:CDS |
AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 4_4:-66917675 | None:intergenic |
CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 4_4:+66918932 | Msa0696900:CDS |
ATCATAATCGACTTGATGAA+AGG | 0.507955 | 4_4:+66919430 | Msa0696900:CDS |
TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 4_4:-66917831 | None:intergenic |
GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 4_4:+66919104 | Msa0696900:CDS |
ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 4_4:+66918950 | Msa0696900:CDS |
TGTCTATAAGATATATAAGT+GGG | 0.514682 | 4_4:+66917635 | Msa0696900:CDS |
GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 4_4:-66919410 | None:intergenic |
TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 4_4:-66919053 | None:intergenic |
TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 4_4:+66917476 | Msa0696900:CDS |
TCATAATCGACTTGATGAAA+GGG | 0.526860 | 4_4:+66919431 | Msa0696900:CDS |
CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 4_4:-66919242 | None:intergenic |
GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 4_4:+66919991 | Msa0696900:CDS |
AGGGTTGTCACAGTCGACAT+TGG | 0.538587 | 4_4:+66919450 | Msa0696900:CDS |
AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 4_4:-66919048 | None:intergenic |
ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 4_4:+66919262 | Msa0696900:CDS |
AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 4_4:+66917477 | Msa0696900:CDS |
CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 4_4:+66917301 | Msa0696900:CDS |
ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 4_4:-66918681 | None:intergenic |
CTGAAATCCACCATGAATGT+TGG | 0.557140 | 4_4:+66919651 | Msa0696900:CDS |
AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 4_4:+66917927 | Msa0696900:CDS |
TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 4_4:+66917260 | Msa0696900:CDS |
GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 4_4:+66917795 | Msa0696900:CDS |
TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 4_4:+66919737 | Msa0696900:CDS |
ATGTCTATAAGATATATAAG+TGG | 0.572287 | 4_4:+66917634 | Msa0696900:CDS |
GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 4_4:-66919166 | None:intergenic |
TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 4_4:-66919897 | None:intergenic |
GAAGCAAAAGAAAGATGATG+AGG | 0.585686 | 4_4:+66920016 | Msa0696900:CDS |
TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 4_4:-66919187 | None:intergenic |
ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 4_4:+66917225 | Msa0696900:CDS |
TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 4_4:+66917786 | Msa0696900:CDS |
TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 4_4:+66919778 | Msa0696900:CDS |
ACCATATACACAGACCAGGC+TGG | 0.590176 | 4_4:+66918667 | Msa0696900:CDS |
ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 4_4:+66919773 | Msa0696900:CDS |
GAGGCTTTAACAAATTAAGC+GGG | 0.594536 | 4_4:+66920035 | Msa0696900:exon |
TTGAAGAAAACCTTTCCCCA+AGG | 0.594796 | 4_4:+66919400 | Msa0696900:CDS |
TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 4_4:-66919853 | None:intergenic |
GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 4_4:+66917866 | Msa0696900:CDS |
AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 4_4:+66917780 | Msa0696900:CDS |
AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 4_4:+66917869 | Msa0696900:CDS |
ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 4_4:+66919740 | Msa0696900:CDS |
ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 4_4:+66919163 | Msa0696900:CDS |
CTTCAAATACTATTATGAGG+AGG | 0.607664 | 4_4:+66919248 | Msa0696900:CDS |
TTGATATCGTTGCGCTTCAG+TGG | 0.611060 | 4_4:-66919685 | None:intergenic |
AGAACTGGACTGTCACATGT+TGG | 0.620791 | 4_4:-66917525 | None:intergenic |
AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 4_4:-66918901 | None:intergenic |
GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 4_4:+66917800 | Msa0696900:CDS |
TGAGGCTTTAACAAATTAAG+CGG | 0.628414 | 4_4:+66920034 | Msa0696900:exon |
ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 4_4:-66919415 | None:intergenic |
GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 4_4:+66918736 | Msa0696900:CDS |
TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 4_4:-66919658 | None:intergenic |
CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 4_4:+66919086 | Msa0696900:CDS |
GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 4_4:-66919636 | None:intergenic |
TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 4_4:-66919207 | None:intergenic |
GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 4_4:+66919762 | Msa0696900:CDS |
CATGTCGACATAAGAAACCC+CGG | 0.663279 | 4_4:-66919512 | None:intergenic |
TCAAACCATATACACAGACC+AGG | 0.671057 | 4_4:+66918663 | Msa0696900:CDS |
TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 4_4:+66919495 | Msa0696900:CDS |
ATGTTGATAATGATAATGAG+AGG | 0.683310 | 4_4:+66919346 | Msa0696900:CDS |
TGTTGATAATGATAATGAGA+GGG | 0.689129 | 4_4:+66919347 | Msa0696900:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGTTTTTTATGTTATAAGTT+AGG | + | chr4_4:66920065-66920084 | Msa0696900:three_prime_UTR | 15.0% |
!! | TTTAATTATGCATATAACAC+TGG | + | chr4_4:66917369-66917388 | Msa0696900:CDS | 20.0% |
!! | CAATTCACAAAATAAGAAAT+CGG | + | chr4_4:66917425-66917444 | Msa0696900:CDS | 20.0% |
!! | ATGTCTATAAGATATATAAG+TGG | + | chr4_4:66917634-66917653 | Msa0696900:CDS | 20.0% |
!! | TGTCTATAAGATATATAAGT+GGG | + | chr4_4:66917635-66917654 | Msa0696900:CDS | 20.0% |
!!! | TGAATGTTTATATTGATTGA+AGG | + | chr4_4:66918224-66918243 | Msa0696900:intron | 20.0% |
!!! | AATTTAATGTTCTGGTTTAT+GGG | + | chr4_4:66918252-66918271 | Msa0696900:intron | 20.0% |
!!! | ATGATGAAAAACTGTTTTAA+TGG | + | chr4_4:66918874-66918893 | Msa0696900:CDS | 20.0% |
! | TGAAAATTCAGTTATTGATG+CGG | + | chr4_4:66917260-66917279 | Msa0696900:CDS | 25.0% |
! | CATTTAGTGATAAAGAATCA+TGG | + | chr4_4:66917301-66917320 | Msa0696900:CDS | 25.0% |
!!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr4_4:66917421-66917440 | None:intergenic | 25.0% |
! | ACAAAATAAGAAATCGGATA+AGG | + | chr4_4:66917431-66917450 | Msa0696900:CDS | 25.0% |
!!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr4_4:66917747-66917766 | Msa0696900:CDS | 25.0% |
! | ACCGAACAAACAATAAATAT+CGG | + | chr4_4:66918069-66918088 | Msa0696900:CDS | 25.0% |
! | AGTACAAAATACTAACCTAA+TGG | - | chr4_4:66918095-66918114 | None:intergenic | 25.0% |
! | TGAAATTTGAATGAATGTTC+TGG | + | chr4_4:66918142-66918161 | Msa0696900:intron | 25.0% |
!! | AGGTTTAGAATTTAATGTTC+TGG | + | chr4_4:66918244-66918263 | Msa0696900:intron | 25.0% |
!!! | GAATTTAATGTTCTGGTTTA+TGG | + | chr4_4:66918251-66918270 | Msa0696900:intron | 25.0% |
!! | TGTTGTATTTTGTTCTGATT+TGG | + | chr4_4:66918500-66918519 | Msa0696900:intron | 25.0% |
! | AAAACACCTTGAAAAACATT+CGG | - | chr4_4:66918712-66918731 | None:intergenic | 25.0% |
! | TTTCGATGAGTTAACTAATT+TGG | + | chr4_4:66918804-66918823 | Msa0696900:CDS | 25.0% |
!!! | TGAAAAACTGTTTTAATGGA+AGG | + | chr4_4:66918878-66918897 | Msa0696900:CDS | 25.0% |
! | CTTTAGTCATTTCAACATTA+TGG | + | chr4_4:66919071-66919090 | Msa0696900:CDS | 25.0% |
! | TGAATAAATGAAAAGCAAGA+TGG | - | chr4_4:66919210-66919229 | None:intergenic | 25.0% |
! | CATAATAGTATTTGAAGGAA+AGG | - | chr4_4:66919245-66919264 | None:intergenic | 25.0% |
! | TTCCTTCAAATACTATTATG+AGG | + | chr4_4:66919245-66919264 | Msa0696900:CDS | 25.0% |
!!! | ATGTTGATAATGATAATGAG+AGG | + | chr4_4:66919346-66919365 | Msa0696900:CDS | 25.0% |
!!! | TGTTGATAATGATAATGAGA+GGG | + | chr4_4:66919347-66919366 | Msa0696900:CDS | 25.0% |
! | TGATGCTTTAACTAAAAAAG+CGG | + | chr4_4:66920096-66920115 | Msa0696900:three_prime_UTR | 25.0% |
! | AATTCTTGATTGTTATGCAT+TGG | + | chr4_4:66920163-66920182 | Msa0696900:three_prime_UTR | 25.0% |
ATATTAACTTCATCTGAGAG+TGG | + | chr4_4:66917225-66917244 | Msa0696900:CDS | 30.0% | |
TAAAGAATCATGGAAGTCTT+TGG | + | chr4_4:66917311-66917330 | Msa0696900:CDS | 30.0% | |
CGTTATGTTTGTAACAAAGA+AGG | + | chr4_4:66917465-66917484 | Msa0696900:CDS | 30.0% | |
TAACAAAGAAGGTTTCAAGA+AGG | + | chr4_4:66917476-66917495 | Msa0696900:CDS | 30.0% | |
AACAAAGAAGGTTTCAAGAA+GGG | + | chr4_4:66917477-66917496 | Msa0696900:CDS | 30.0% | |
TAAAGAAAAACCAGAGGAAA+GGG | + | chr4_4:66917566-66917585 | Msa0696900:CDS | 30.0% | |
! | AGCTGGAATATATTTGAAGT+TGG | + | chr4_4:66917599-66917618 | Msa0696900:CDS | 30.0% |
! | AAATGCTCTGGTTTATGTAA+TGG | - | chr4_4:66917678-66917697 | None:intergenic | 30.0% |
AGAACATCTTATGAAGTGAT+GGG | + | chr4_4:66917780-66917799 | Msa0696900:CDS | 30.0% | |
! | GAATCTTCCTTTTCGATTTT+CGG | + | chr4_4:66917824-66917843 | Msa0696900:CDS | 30.0% |
TTTAAGTCCGAAAATCGAAA+AGG | - | chr4_4:66917834-66917853 | None:intergenic | 30.0% | |
TGGATATCATAGTAAAAACC+TGG | - | chr4_4:66917948-66917967 | None:intergenic | 30.0% | |
!!! | AAGACATAGCCAGTATTTTT+TGG | + | chr4_4:66917982-66918001 | Msa0696900:CDS | 30.0% |
!!! | AGACATAGCCAGTATTTTTT+GGG | + | chr4_4:66917983-66918002 | Msa0696900:CDS | 30.0% |
CAACAAGATTATGCTCTATT+TGG | + | chr4_4:66918020-66918039 | Msa0696900:CDS | 30.0% | |
GCCGATATTTATTGTTTGTT+CGG | - | chr4_4:66918073-66918092 | None:intergenic | 30.0% | |
AACAATAAATATCGGCCATT+AGG | + | chr4_4:66918077-66918096 | Msa0696900:CDS | 30.0% | |
!! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr4_4:66918156-66918175 | Msa0696900:intron | 30.0% |
CTGGTATATGTGTGTTAATT+TGG | + | chr4_4:66918181-66918200 | Msa0696900:intron | 30.0% | |
AAACACATATGATCTTTCCA+TGG | - | chr4_4:66918315-66918334 | None:intergenic | 30.0% | |
TTTCTATTTACACAGCACAA+TGG | + | chr4_4:66918459-66918478 | Msa0696900:intron | 30.0% | |
ATGATTGTCAAAACCAAGAA+AGG | - | chr4_4:66918539-66918558 | None:intergenic | 30.0% | |
! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr4_4:66918653-66918672 | None:intergenic | 30.0% |
! | TCAATTCCGAATGTTTTTCA+AGG | + | chr4_4:66918703-66918722 | Msa0696900:CDS | 30.0% |
!!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr4_4:66918715-66918734 | Msa0696900:CDS | 30.0% |
GAGAATGCAAAGAAAAATCT+CGG | + | chr4_4:66918760-66918779 | Msa0696900:CDS | 30.0% | |
AATCAGATTTCGACTACAAT+TGG | + | chr4_4:66918845-66918864 | Msa0696900:CDS | 30.0% | |
ATCAGATTTCGACTACAATT+GGG | + | chr4_4:66918846-66918865 | Msa0696900:CDS | 30.0% | |
TAAAGAATCGAACAAGTGAA+TGG | - | chr4_4:66919056-66919075 | None:intergenic | 30.0% | |
TGGTGTATACTTGTTTACTA+CGG | - | chr4_4:66919190-66919209 | None:intergenic | 30.0% | |
CTCCTCATAATAGTATTTGA+AGG | - | chr4_4:66919250-66919269 | None:intergenic | 30.0% | |
CTTCAAATACTATTATGAGG+AGG | + | chr4_4:66919248-66919267 | Msa0696900:CDS | 30.0% | |
! | CAAAGTTTTCACAATTGAGA+AGG | + | chr4_4:66919305-66919324 | Msa0696900:CDS | 30.0% |
ATTATGATCTTCAAACCTTG+GGG | - | chr4_4:66919418-66919437 | None:intergenic | 30.0% | |
GATTATGATCTTCAAACCTT+GGG | - | chr4_4:66919419-66919438 | None:intergenic | 30.0% | |
!! | ATCATAATCGACTTGATGAA+AGG | + | chr4_4:66919430-66919449 | Msa0696900:CDS | 30.0% |
!! | TCATAATCGACTTGATGAAA+GGG | + | chr4_4:66919431-66919450 | Msa0696900:CDS | 30.0% |
!! | TCGACATGTTTTCAAGATTT+TGG | + | chr4_4:66919527-66919546 | Msa0696900:CDS | 30.0% |
!! | ACATGTTTTCAAGATTTTGG+AGG | + | chr4_4:66919530-66919549 | Msa0696900:CDS | 30.0% |
!!! | CTGCACAATATGTTTTAAAG+CGG | + | chr4_4:66919595-66919614 | Msa0696900:CDS | 30.0% |
! | GCATCTGAAATATTTCTCAA+CGG | + | chr4_4:66919762-66919781 | Msa0696900:CDS | 30.0% |
!! | GAGGAGTTTCTTATTTCTAA+AGG | + | chr4_4:66919810-66919829 | Msa0696900:CDS | 30.0% |
! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr4_4:66919918-66919937 | None:intergenic | 30.0% |
AAGAAAGACCAAATCCAATT+AGG | + | chr4_4:66919925-66919944 | Msa0696900:CDS | 30.0% | |
TTCTTTGACCTAATTGGATT+TGG | - | chr4_4:66919936-66919955 | None:intergenic | 30.0% | |
! | TGAGGCTTTAACAAATTAAG+CGG | + | chr4_4:66920034-66920053 | Msa0696900:exon | 30.0% |
!!! | GTGTTTGTTGCTGTTTTCAA+TGG | + | chr4_4:66917197-66917216 | Msa0696900:exon | 35.0% |
ATAACACTGGATTCTCTGTT+AGG | + | chr4_4:66917382-66917401 | Msa0696900:CDS | 35.0% | |
GTCTGCTTAATCCTAAAAAC+AGG | + | chr4_4:66917502-66917521 | Msa0696900:CDS | 35.0% | |
TTCTCATACTCAACAAGAAC+TGG | - | chr4_4:66917543-66917562 | None:intergenic | 35.0% | |
GAAAGCTAAAGAAAAACCAG+AGG | + | chr4_4:66917560-66917579 | Msa0696900:CDS | 35.0% | |
CTAAAGAAAAACCAGAGGAA+AGG | + | chr4_4:66917565-66917584 | Msa0696900:CDS | 35.0% | |
CGAGAAGTAAATGAAGTTCA+AGG | + | chr4_4:66917717-66917736 | Msa0696900:CDS | 35.0% | |
GAGAACATCTTATGAAGTGA+TGG | + | chr4_4:66917779-66917798 | Msa0696900:CDS | 35.0% | |
TCTAATGACAACTCGTCAAA+AGG | + | chr4_4:66917860-66917879 | Msa0696900:CDS | 35.0% | |
! | TGGTTTAGAATTGAAGGTTC+TGG | + | chr4_4:66918162-66918181 | Msa0696900:intron | 35.0% |
CATAAATTCCAAGGCAAGAT+AGG | - | chr4_4:66918282-66918301 | None:intergenic | 35.0% | |
TGTACAGAGCATAAATTCCA+AGG | - | chr4_4:66918291-66918310 | None:intergenic | 35.0% | |
! | CATCGTAAGAGTGTGTTATT+TGG | + | chr4_4:66918556-66918575 | Msa0696900:CDS | 35.0% |
!!! | AGACATCAGCTACTTTTGAT+TGG | + | chr4_4:66918599-66918618 | Msa0696900:CDS | 35.0% |
! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr4_4:66918728-66918747 | Msa0696900:CDS | 35.0% |
! | TTTTAATGGAAGGCCTACTT+CGG | + | chr4_4:66918888-66918907 | Msa0696900:CDS | 35.0% |
CTCATTCAAATCGTATGCAT+TGG | + | chr4_4:66918932-66918951 | Msa0696900:CDS | 35.0% | |
!! | TATGCATTGGTCTTCAGTTT+GGG | + | chr4_4:66918945-66918964 | Msa0696900:CDS | 35.0% |
! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr4_4:66919015-66919034 | Msa0696900:CDS | 35.0% |
ACATTATGGTTCAGAGAATG+AGG | + | chr4_4:66919085-66919104 | Msa0696900:CDS | 35.0% | |
CATTATGGTTCAGAGAATGA+GGG | + | chr4_4:66919086-66919105 | Msa0696900:CDS | 35.0% | |
! | GGTTTCGAATGTTGATGTTT+TGG | + | chr4_4:66919368-66919387 | Msa0696900:CDS | 35.0% |
CGATTATGATCTTCAAACCT+TGG | - | chr4_4:66919420-66919439 | None:intergenic | 35.0% | |
!! | TTCAAGATTTTGGAGGTCTT+AGG | + | chr4_4:66919537-66919556 | Msa0696900:CDS | 35.0% |
!! | CGCTTTAAAACATATTGTGC+AGG | - | chr4_4:66919597-66919616 | None:intergenic | 35.0% |
!!! | CACAATATGTTTTAAAGCGG+TGG | + | chr4_4:66919598-66919617 | Msa0696900:CDS | 35.0% |
!! | ACTGCTTTTGAAGACTTAGA+AGG | - | chr4_4:66919864-66919883 | None:intergenic | 35.0% |
GACAGAAATTCCTTATAGCT+CGG | + | chr4_4:66919991-66920010 | Msa0696900:CDS | 35.0% | |
GAAGCAAAAGAAAGATGATG+AGG | + | chr4_4:66920016-66920035 | Msa0696900:CDS | 35.0% | |
! | GAGGCTTTAACAAATTAAGC+GGG | + | chr4_4:66920035-66920054 | Msa0696900:exon | 35.0% |
ATCTGAGAGTGGACAATTGA+CGG | + | chr4_4:66917236-66917255 | Msa0696900:CDS | 40.0% | |
!! | TCACATGTTGGCCTGTTTTT+AGG | - | chr4_4:66917516-66917535 | None:intergenic | 40.0% |
!! | TCTTATGAAGTGATGGGTCA+AGG | + | chr4_4:66917786-66917805 | Msa0696900:CDS | 40.0% |
TCCATCTGCCCAAAAAATAC+TGG | - | chr4_4:66917994-66918013 | None:intergenic | 40.0% | |
ATTTATGCTCTGTACAGCCA+TGG | + | chr4_4:66918295-66918314 | Msa0696900:intron | 40.0% | |
TCCAGCTATGCAAAGATCAT+AGG | + | chr4_4:66918405-66918424 | Msa0696900:intron | 40.0% | |
ACCTATGATCTTTGCATAGC+TGG | - | chr4_4:66918409-66918428 | None:intergenic | 40.0% | |
TTCATTTCAGCTGCCTTTCT+TGG | + | chr4_4:66918523-66918542 | Msa0696900:intron | 40.0% | |
TGGTCTGTGTATATGGTTTG+AGG | - | chr4_4:66918664-66918683 | None:intergenic | 40.0% | |
TCAAACCATATACACAGACC+AGG | + | chr4_4:66918663-66918682 | Msa0696900:CDS | 40.0% | |
!! | GTATGCATTGGTCTTCAGTT+TGG | + | chr4_4:66918944-66918963 | Msa0696900:CDS | 40.0% |
AATCGAACAAGTGAATGGTC+TGG | - | chr4_4:66919051-66919070 | None:intergenic | 40.0% | |
! | TCATGCTGAGTTGGACTTTA+AGG | + | chr4_4:66919113-66919132 | Msa0696900:CDS | 40.0% |
TATGAGGAGGACACAACAAA+AGG | + | chr4_4:66919261-66919280 | Msa0696900:CDS | 40.0% | |
ATGAGGAGGACACAACAAAA+GGG | + | chr4_4:66919262-66919281 | Msa0696900:CDS | 40.0% | |
TTGAAGAAAACCTTTCCCCA+AGG | + | chr4_4:66919400-66919419 | Msa0696900:CDS | 40.0% | |
CATGTCGTATGTTTGAGAAC+CGG | + | chr4_4:66919493-66919512 | Msa0696900:CDS | 40.0% | |
ATGTCGTATGTTTGAGAACC+GGG | + | chr4_4:66919494-66919513 | Msa0696900:CDS | 40.0% | |
!! | AAGATTTTGGAGGTCTTAGG+TGG | + | chr4_4:66919540-66919559 | Msa0696900:CDS | 40.0% |
GATTTCAGCTTATCGACAGA+CGG | - | chr4_4:66919639-66919658 | None:intergenic | 40.0% | |
CTGAAATCCACCATGAATGT+TGG | + | chr4_4:66919651-66919670 | Msa0696900:CDS | 40.0% | |
TTTAGTGCCAACATTCATGG+TGG | - | chr4_4:66919661-66919680 | None:intergenic | 40.0% | |
GTCTTTAGTGCCAACATTCA+TGG | - | chr4_4:66919664-66919683 | None:intergenic | 40.0% | |
ATTTCTCAACGGTGTTCTTG+AGG | + | chr4_4:66919773-66919792 | Msa0696900:CDS | 40.0% | |
! | TGAAGACTTAGAAGGCGTAA+CGG | - | chr4_4:66919856-66919875 | None:intergenic | 40.0% |
AGTCGCTTCTTTGACCTAAT+TGG | - | chr4_4:66919942-66919961 | None:intergenic | 40.0% | |
TTTGCTTCTTCCGAGCTATA+AGG | - | chr4_4:66920004-66920023 | None:intergenic | 40.0% | |
AGAACTGGACTGTCACATGT+TGG | - | chr4_4:66917528-66917547 | None:intergenic | 45.0% | |
GAAAAACCAGAGGAAAGGGT+TGG | + | chr4_4:66917570-66917589 | Msa0696900:CDS | 45.0% | |
TTACAACCAACCCTTTCCTC+TGG | - | chr4_4:66917579-66917598 | None:intergenic | 45.0% | |
!! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr4_4:66917582-66917601 | Msa0696900:CDS | 45.0% |
CTCAAGTAGCACAAATGCTC+TGG | - | chr4_4:66917690-66917709 | None:intergenic | 45.0% | |
GACAACTCGTCAAAAGGAGA+TGG | + | chr4_4:66917866-66917885 | Msa0696900:CDS | 45.0% | |
AACTCGTCAAAAGGAGATGG+TGG | + | chr4_4:66917869-66917888 | Msa0696900:CDS | 45.0% | |
AATGAAGCTCTCTCGAAACC+AGG | + | chr4_4:66917927-66917946 | Msa0696900:CDS | 45.0% | |
TGTCTTCTGCAGCATCAACT+TGG | - | chr4_4:66917968-66917987 | None:intergenic | 45.0% | |
!!! | GCCAGTATTTTTTGGGCAGA+TGG | + | chr4_4:66917990-66918009 | Msa0696900:CDS | 45.0% |
AGCCACTTAAAGTCCGAAGT+AGG | - | chr4_4:66918904-66918923 | None:intergenic | 45.0% | |
!! | ATTGGTCTTCAGTTTGGGTG+AGG | + | chr4_4:66918950-66918969 | Msa0696900:CDS | 45.0% |
! | GTGAGGTCACATTTTACAGC+TGG | + | chr4_4:66918967-66918986 | Msa0696900:CDS | 45.0% |
GAGGGATAATCATGCTGAGT+TGG | + | chr4_4:66919104-66919123 | Msa0696900:CDS | 45.0% | |
ATCCCAACAGTCAGCTTATG+CGG | + | chr4_4:66919163-66919182 | Msa0696900:CDS | 45.0% | |
GATCTTCAAACCTTGGGGAA+AGG | - | chr4_4:66919413-66919432 | None:intergenic | 45.0% | |
TGTCGTATGTTTGAGAACCG+GGG | + | chr4_4:66919495-66919514 | Msa0696900:CDS | 45.0% | |
CATGTCGACATAAGAAACCC+CGG | - | chr4_4:66919515-66919534 | None:intergenic | 45.0% | |
TTGATATCGTTGCGCTTCAG+TGG | - | chr4_4:66919688-66919707 | None:intergenic | 45.0% | |
TGTTCTTGAGGCAGGGAAAA+AGG | + | chr4_4:66919785-66919804 | Msa0696900:CDS | 45.0% | |
CTGTCTGTGAACCATCTGTT+GGG | + | chr4_4:66919886-66919905 | Msa0696900:CDS | 45.0% | |
!! | GAAGTGATGGGTCAAGGAGT+TGG | + | chr4_4:66917792-66917811 | Msa0696900:CDS | 50.0% |
TGGGTGATCCTATCTTGCCT+TGG | + | chr4_4:66918271-66918290 | Msa0696900:intron | 50.0% | |
ACCATATACACAGACCAGGC+TGG | + | chr4_4:66918667-66918686 | Msa0696900:CDS | 50.0% | |
ACCAGCCTGGTCTGTGTATA+TGG | - | chr4_4:66918671-66918690 | None:intergenic | 50.0% | |
TGGTCTTTGCTCATGGCACA+TGG | + | chr4_4:66918735-66918754 | Msa0696900:CDS | 50.0% | |
GGTCTTTGCTCATGGCACAT+GGG | + | chr4_4:66918736-66918755 | Msa0696900:CDS | 50.0% | |
GGCCTACTTCGGACTTTAAG+TGG | + | chr4_4:66918899-66918918 | Msa0696900:CDS | 50.0% | |
GACCGCATAAGCTGACTGTT+GGG | - | chr4_4:66919168-66919187 | None:intergenic | 50.0% | |
AGGGTTGTCACAGTCGACAT+TGG | + | chr4_4:66919450-66919469 | Msa0696900:CDS | 50.0% | |
GGGTTGTCACAGTCGACATT+GGG | + | chr4_4:66919451-66919470 | Msa0696900:CDS | 50.0% | |
TACACGTGTTTGCGCAGATG+CGG | + | chr4_4:66919737-66919756 | Msa0696900:CDS | 50.0% | |
TCAACGGTGTTCTTGAGGCA+GGG | + | chr4_4:66919778-66919797 | Msa0696900:CDS | 50.0% | |
GCTGTCTGTGAACCATCTGT+TGG | + | chr4_4:66919885-66919904 | Msa0696900:CDS | 50.0% | |
! | TTTGGTGCAGTCCCAACAGA+TGG | - | chr4_4:66919900-66919919 | None:intergenic | 50.0% |
!! | GTGATGGGTCAAGGAGTTGG+AGG | + | chr4_4:66917795-66917814 | Msa0696900:CDS | 55.0% |
! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr4_4:66917873-66917892 | Msa0696900:CDS | 55.0% |
ACTTCAACAACGCACCAGCC+TGG | - | chr4_4:66918684-66918703 | None:intergenic | 55.0% | |
GGACCGCATAAGCTGACTGT+TGG | - | chr4_4:66919169-66919188 | None:intergenic | 55.0% | |
CTCAACGGTGTTCTTGAGGC+AGG | + | chr4_4:66919777-66919796 | Msa0696900:CDS | 55.0% | |
TGAGGCAGGGAAAAAGGCAG+AGG | + | chr4_4:66919791-66919810 | Msa0696900:CDS | 55.0% | |
GGGTCAAGGAGTTGGAGGCA+CGG | + | chr4_4:66917800-66917819 | Msa0696900:CDS | 60.0% | |
ACGTGTTTGCGCAGATGCGG+AGG | + | chr4_4:66919740-66919759 | Msa0696900:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_4 | gene | 66917171 | 66920204 | 66917171 | ID=Msa0696900;Name=Msa0696900 |
chr4_4 | mRNA | 66917171 | 66920204 | 66917171 | ID=Msa0696900-mRNA-1;Parent=Msa0696900;Name=Msa0696900-mRNA-1;_AED=0.00;_eAED=0.00;_QI=45|1|1|1|1|1|2|152|800 |
chr4_4 | exon | 66917171 | 66918098 | 66917171 | ID=Msa0696900-mRNA-1:exon:19507;Parent=Msa0696900-mRNA-1 |
chr4_4 | exon | 66918533 | 66920204 | 66918533 | ID=Msa0696900-mRNA-1:exon:19508;Parent=Msa0696900-mRNA-1 |
chr4_4 | five_prime_UTR | 66917171 | 66917215 | 66917171 | ID=Msa0696900-mRNA-1:five_prime_utr;Parent=Msa0696900-mRNA-1 |
chr4_4 | CDS | 66917216 | 66918098 | 66917216 | ID=Msa0696900-mRNA-1:cds;Parent=Msa0696900-mRNA-1 |
chr4_4 | CDS | 66918533 | 66920052 | 66918533 | ID=Msa0696900-mRNA-1:cds;Parent=Msa0696900-mRNA-1 |
chr4_4 | three_prime_UTR | 66920053 | 66920204 | 66920053 | ID=Msa0696900-mRNA-1:three_prime_utr;Parent=Msa0696900-mRNA-1 |
Gene Sequence |
Protein sequence |