AlfalfaGEDB | Msa0699930

M. sativa cultivar zhongmu-4 / Msa0699930

KEGG: -
GO: GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141
PFAM: PF06200.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0699930	XP_039684492.1	95.420	131	4	1	2	132	3	131	4.82e-84	252

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0699930	sp\|Q8LBM2\|TIF5A_ARATH	43.307	127	66	4	3	125	4	128	2.39e-20	83.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0699930	A0A396GSB0	95.420	131	4	1	2	132	3	131	2.30e-84	252

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TFs/TRs:

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Gene ID	Type	Classification
Msa0699930	TF	Tify

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0699930	MtrunA17_Chr8g0376421	95.420	131	4	1	2	132	3	131	4.44e-88	252
Msa0699930	MtrunA17_Chr2g0285821	51.449	138	46	5	3	125	2	133	1.30e-33	114
Msa0699930	MtrunA17_Chr8g0393051	50.781	128	47	4	1	124	1	116	5.55e-30	104

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0699930	AT1G30135.1	43.307	127	66	4	3	125	4	128	2.43e-21	83.2

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Find 36 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGTGAAGTGTTGTGGA+CGG	0.653198	4_4:-70723528	None:intergenic
AAATATTAAACCTTAAACAA+TGG	0.454258	4_4:-70726224	None:intergenic
AAGATCATAAGCAGCAGTAC+AGG	0.470194	4_4:+70723821	Msa0699930:CDS
AATATTAAACCTTAAACAAT+GGG	0.440398	4_4:-70726223	None:intergenic
AATCTTGCCATCATAGACAA+TGG	0.643141	4_4:-70723851	None:intergenic
AATTTCACAGCATGTCTACA+AGG	0.551214	4_4:-70726159	None:intergenic
ACAGAACCGTAGAATTTCTT+TGG	0.322349	4_4:-70726249	None:intergenic
ACTAGTGTATCTTTCAACAA+AGG	0.570785	4_4:+70726079	Msa0699930:three_prime_UTR
ATTTAACCAAAGAAATTCTA+CGG	0.489632	4_4:+70726243	Msa0699930:three_prime_UTR
ATTTATCTTAAGATGGTAAG+GGG	0.589050	4_4:-70725989	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGAAGAAGAATTTGAACT+TGG	+	chr4_4:70723584-70723603	Msa0699930:CDS	30.0%
AAAGAAGAAGAAGAAGAAGA+AGG	+	chr4_4:70723784-70723803	Msa0699930:CDS	30.0%
TTGAATGAAAGTTTGGTTGA+GGG	-	chr4_4:70724625-70724644	None:intergenic	30.0%
AGAGATTCAGAAATTACTCA+AGG	+	chr4_4:70724729-70724748	Msa0699930:intron	30.0%
ACAAGAATTAAAGAGAGAGA+GGG	-	chr4_4:70725002-70725021	None:intergenic	30.0%
TCTCTCTCTTTAATTCTTGT+GGG	+	chr4_4:70725002-70725021	Msa0699930:intron	30.0%
AATAGCATCATCATCTAGTT+AGG	+	chr4_4:70725639-70725658	Msa0699930:intron	30.0%
TTGCAAAAAAAGAAATGGTG+AGG	+	chr4_4:70725833-70725852	Msa0699930:CDS	30.0%
ACTAGTGTATCTTTCAACAA+AGG	+	chr4_4:70726079-70726098	Msa0699930:three_prime_UTR	30.0%
CTAGTGTATCTTTCAACAAA+GGG	+	chr4_4:70726080-70726099	Msa0699930:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	70723495	70726280	70723495	ID=Msa0699930;Name=Msa0699930
chr4_4	mRNA	70723495	70726280	70723495	ID=Msa0699930-mRNA-1;Parent=Msa0699930;Name=Msa0699930-mRNA-1;_AED=0.12;_eAED=0.12;_QI=87\|1\|1\|1\|1\|1\|3\|257\|132
chr4_4	exon	70723495	70723649	70723495	ID=Msa0699930-mRNA-1:exon:21439;Parent=Msa0699930-mRNA-1
chr4_4	exon	70723780	70723900	70723780	ID=Msa0699930-mRNA-1:exon:21440;Parent=Msa0699930-mRNA-1
chr4_4	exon	70725814	70726280	70725814	ID=Msa0699930-mRNA-1:exon:21441;Parent=Msa0699930-mRNA-1
chr4_4	five_prime_UTR	70723495	70723581	70723495	ID=Msa0699930-mRNA-1:five_prime_utr;Parent=Msa0699930-mRNA-1
chr4_4	CDS	70723582	70723649	70723582	ID=Msa0699930-mRNA-1:cds;Parent=Msa0699930-mRNA-1
chr4_4	CDS	70723780	70723900	70723780	ID=Msa0699930-mRNA-1:cds;Parent=Msa0699930-mRNA-1
chr4_4	CDS	70725814	70726023	70725814	ID=Msa0699930-mRNA-1:cds;Parent=Msa0699930-mRNA-1
chr4_4	three_prime_UTR	70726024	70726280	70726024	ID=Msa0699930-mRNA-1:three_prime_utr;Parent=Msa0699930-mRNA-1

Gene Sequence

>Msa0699930

ATGAAGAAGAAGAATTTGAACTTGGAACTTCGTCTTTTTCCTCCTTCCATTTCTGATATTTGTCCCACAATGAAAGAAGAAGAAGAAGAAGAAGGTGAGAGTCCACAAGAAGATCATAAGCAGCAGTACAGGCCGTTGACCATTGTCTATGATGGCAAGATTTCTGTGACTGATGCCACTGAGATTCAGGCCAGGTCCATTTTAATGCTTGCAAAAAAAGAAATGGTGAGGACACCAACTGGATCATCATCAGAGCCATCTTCACCATCAGTTTTTAACTTGTATAGCCCAAGTACTTCTCTTTCCATGCAAAAATCGTTGCAGAGGTTTCTCCAAAAGAGGAAGAATCGGATTCAAGAAGCATCCCCTTACCATCTTAAGATAAATGAGAAGAATTAA

Protein sequence

>Msa0699930

MKKKNLNLELRLFPPSISDICPTMKEEEEEEGESPQEDHKQQYRPLTIVYDGKISVTDATEIQARSILMLAKKEMVRTPTGSSSEPSSPSVFNLYSPSTSLSMQKSLQRFLQKRKNRIQEASPYHLKINEKN*