Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699930 | XP_039684492.1 | 95.420 | 131 | 4 | 1 | 2 | 132 | 3 | 131 | 4.82e-84 | 252 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699930 | sp|Q8LBM2|TIF5A_ARATH | 43.307 | 127 | 66 | 4 | 3 | 125 | 4 | 128 | 2.39e-20 | 83.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699930 | A0A396GSB0 | 95.420 | 131 | 4 | 1 | 2 | 132 | 3 | 131 | 2.30e-84 | 252 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0699930 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699930 | MtrunA17_Chr8g0376421 | 95.420 | 131 | 4 | 1 | 2 | 132 | 3 | 131 | 4.44e-88 | 252 |
| Msa0699930 | MtrunA17_Chr2g0285821 | 51.449 | 138 | 46 | 5 | 3 | 125 | 2 | 133 | 1.30e-33 | 114 |
| Msa0699930 | MtrunA17_Chr8g0393051 | 50.781 | 128 | 47 | 4 | 1 | 124 | 1 | 116 | 5.55e-30 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699930 | AT1G30135.1 | 43.307 | 127 | 66 | 4 | 3 | 125 | 4 | 128 | 2.43e-21 | 83.2 |
Find 36 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTTATGCCCATTGTTTA+AGG | 0.167289 | 4_4:+70726214 | Msa0699930:three_prime_UTR |
| GAATCCGATTCTTCCTCTTT+TGG | 0.250942 | 4_4:-70725957 | None:intergenic |
| GACTGATGCCACTGAGATTC+AGG | 0.303605 | 4_4:+70723879 | Msa0699930:CDS |
| ACAGAACCGTAGAATTTCTT+TGG | 0.322349 | 4_4:-70726249 | None:intergenic |
| TCTTTCTTCCAAGAGAGTTA+TGG | 0.395272 | 4_4:-70723560 | None:intergenic |
| TCTTCTCATTTATCTTAAGA+TGG | 0.423225 | 4_4:-70725996 | None:intergenic |
| TTCTCCAAAAGAGGAAGAAT+CGG | 0.429979 | 4_4:+70725953 | Msa0699930:CDS |
| TCATTTATCTTAAGATGGTA+AGG | 0.430837 | 4_4:-70725991 | None:intergenic |
| CGTGGGACAAATATCAGAAA+TGG | 0.434500 | 4_4:-70723628 | None:intergenic |
| TTGTCTCTCCATAACTCTCT+TGG | 0.439311 | 4_4:+70723552 | Msa0699930:five_prime_UTR |
| AATATTAAACCTTAAACAAT+GGG | 0.440398 | 4_4:-70726223 | None:intergenic |
| GAAATGGTGAGGACACCAAC+TGG | 0.450322 | 4_4:+70725844 | Msa0699930:CDS |
| AAATATTAAACCTTAAACAA+TGG | 0.454258 | 4_4:-70726224 | None:intergenic |
| TGAAAGATACACTAGTATAT+AGG | 0.468122 | 4_4:-70726072 | None:intergenic |
| AAGATCATAAGCAGCAGTAC+AGG | 0.470194 | 4_4:+70723821 | Msa0699930:CDS |
| TGCAGAGGTTTCTCCAAAAG+AGG | 0.484466 | 4_4:+70725944 | Msa0699930:CDS |
| ATTTAACCAAAGAAATTCTA+CGG | 0.489632 | 4_4:+70726243 | Msa0699930:three_prime_UTR |
| CTAGTGTATCTTTCAACAAA+GGG | 0.494852 | 4_4:+70726080 | Msa0699930:three_prime_UTR |
| TGCTGCTTATGATCTTCTTG+TGG | 0.500195 | 4_4:-70723814 | None:intergenic |
| CCGTTGACCATTGTCTATGA+TGG | 0.521959 | 4_4:+70723844 | Msa0699930:CDS |
| GAAGAAGAAGAATTTGAACT+TGG | 0.522533 | 4_4:+70723584 | Msa0699930:CDS |
| CATTTATCTTAAGATGGTAA+GGG | 0.531668 | 4_4:-70725990 | None:intergenic |
| TGCAAGCATTAAAATGGACC+TGG | 0.550717 | 4_4:-70725815 | None:intergenic |
| AATTTCACAGCATGTCTACA+AGG | 0.551214 | 4_4:-70726159 | None:intergenic |
| TGCATGGAAAGAGAAGTACT+TGG | 0.565347 | 4_4:-70725913 | None:intergenic |
| ACTAGTGTATCTTTCAACAA+AGG | 0.570785 | 4_4:+70726079 | Msa0699930:three_prime_UTR |
| GCATGGAAAGAGAAGTACTT+GGG | 0.571067 | 4_4:-70725912 | None:intergenic |
| ATTTATCTTAAGATGGTAAG+GGG | 0.589050 | 4_4:-70725989 | None:intergenic |
| CAATAAACAGTGAAGTGTTG+TGG | 0.598861 | 4_4:-70723532 | None:intergenic |
| CAAATATCAGAAATGGAAGG+AGG | 0.629749 | 4_4:-70723621 | None:intergenic |
| AATCTTGCCATCATAGACAA+TGG | 0.643141 | 4_4:-70723851 | None:intergenic |
| CCATCATAGACAATGGTCAA+CGG | 0.652322 | 4_4:-70723844 | None:intergenic |
| AAACAGTGAAGTGTTGTGGA+CGG | 0.653198 | 4_4:-70723528 | None:intergenic |
| GGCTCTGATGATGATCCAGT+TGG | 0.655026 | 4_4:-70725859 | None:intergenic |
| GGACAAATATCAGAAATGGA+AGG | 0.658341 | 4_4:-70723624 | None:intergenic |
| TGAACACACCTGAATCTCAG+TGG | 0.730872 | 4_4:-70723887 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTTTTTAAAATA+TGG | + | chr4_4:70724505-70724524 | Msa0699930:intron | 0.0% |
| !!! | ATTTTAATTTTAATATATTA+AGG | - | chr4_4:70725619-70725638 | None:intergenic | 0.0% |
| !!! | AAGTAAAAAAACAATTTTTT+AGG | - | chr4_4:70724329-70724348 | None:intergenic | 10.0% |
| !! | ATAATAGTTTGAATTAAAAT+TGG | + | chr4_4:70725747-70725766 | Msa0699930:intron | 10.0% |
| !! | AAATAAAACAAAAACCTAAT+TGG | - | chr4_4:70723734-70723753 | None:intergenic | 15.0% |
| !!! | ATTAGGTTTTTGTTTTATTT+TGG | + | chr4_4:70723734-70723753 | Msa0699930:intron | 15.0% |
| !!! | TAAGCAATTTTTGTTTTTTT+AGG | - | chr4_4:70724080-70724099 | None:intergenic | 15.0% |
| !! | CATTGAATAAATAATGTATA+TGG | + | chr4_4:70724265-70724284 | Msa0699930:intron | 15.0% |
| !!! | ATATACGTTTTTTATTTTTC+TGG | - | chr4_4:70724376-70724395 | None:intergenic | 15.0% |
| !!! | CTATTTATTAATTTTTTCTG+CGG | + | chr4_4:70725097-70725116 | Msa0699930:intron | 15.0% |
| !! | GAAAAAAAAATCAAAAAACA+TGG | - | chr4_4:70725563-70725582 | None:intergenic | 15.0% |
| !! | AATATTAAACCTTAAACAAT+GGG | - | chr4_4:70726226-70726245 | None:intergenic | 15.0% |
| !! | AAATATTAAACCTTAAACAA+TGG | - | chr4_4:70726227-70726246 | None:intergenic | 15.0% |
| !!! | ACTTTATTTCACATATAACA+AGG | - | chr4_4:70723681-70723700 | None:intergenic | 20.0% |
| !!! | AATTTGCTTATAAATGTGAA+CGG | - | chr4_4:70724017-70724036 | None:intergenic | 20.0% |
| !! | CATAGAATAATTAATGTATC+TGG | - | chr4_4:70724304-70724323 | None:intergenic | 20.0% |
| !!! | TTTTTACTTATAAATGTGAC+CGG | + | chr4_4:70724340-70724359 | Msa0699930:intron | 20.0% |
| !! | ATTAAAAGAGAGAAGATAAA+TGG | - | chr4_4:70724662-70724681 | None:intergenic | 20.0% |
| !! | CAATGATATTAGTACTTAAT+AGG | - | chr4_4:70725146-70725165 | None:intergenic | 20.0% |
| !! | AGCTACAAATTTAGTAATAA+AGG | + | chr4_4:70725326-70725345 | Msa0699930:intron | 20.0% |
| !! | GCTACAAATTTAGTAATAAA+GGG | + | chr4_4:70725327-70725346 | Msa0699930:intron | 20.0% |
| !!! | ATTTGTAGTTTGCATTTATA+AGG | - | chr4_4:70725359-70725378 | None:intergenic | 20.0% |
| !! | TATAAATGCAAACTACAAAT+TGG | + | chr4_4:70725359-70725378 | Msa0699930:intron | 20.0% |
| !! | GATATAAATAAATCAGTAAG+CGG | + | chr4_4:70725413-70725432 | Msa0699930:intron | 20.0% |
| !!! | TCAAACTATTATTGATGATA+AGG | - | chr4_4:70725739-70725758 | None:intergenic | 20.0% |
| !! | TTAAAATTGGAATTAAGTAG+TGG | + | chr4_4:70725760-70725779 | Msa0699930:intron | 20.0% |
| !! | TAAAATTGGAATTAAGTAGT+GGG | + | chr4_4:70725761-70725780 | Msa0699930:intron | 20.0% |
| !!! | TTTTTTTGCAAGCATTAAAA+TGG | - | chr4_4:70725824-70725843 | None:intergenic | 20.0% |
| !!! | CAATTTTTTAGTTGATGTTT+TGG | + | chr4_4:70726186-70726205 | Msa0699930:three_prime_UTR | 20.0% |
| !! | ATTTAACCAAAGAAATTCTA+CGG | + | chr4_4:70726243-70726262 | Msa0699930:three_prime_UTR | 20.0% |
| ! | TAAAGTTAACATGTACTACT+TGG | + | chr4_4:70723695-70723714 | Msa0699930:intron | 25.0% |
| ! | AAAGTTAACATGTACTACTT+GGG | + | chr4_4:70723696-70723715 | Msa0699930:intron | 25.0% |
| ! | AAATTGCTTATAAATGTGAC+TGG | + | chr4_4:70724090-70724109 | Msa0699930:intron | 25.0% |
| ! | ATGCATTATTGTACATGATA+TGG | - | chr4_4:70724200-70724219 | None:intergenic | 25.0% |
| !! | TAAGCAAAACACAACTTTTA+AGG | + | chr4_4:70724240-70724259 | Msa0699930:intron | 25.0% |
| !! | TTTTCAAAAAATGCATATGC+AGG | + | chr4_4:70724420-70724439 | Msa0699930:intron | 25.0% |
| !! | TATTAATTCTGGTGCTAAAT+AGG | - | chr4_4:70724918-70724937 | None:intergenic | 25.0% |
| ! | TGTGTACAATTTATTACGTA+TGG | - | chr4_4:70725028-70725047 | None:intergenic | 25.0% |
| !!! | TTCATTTTTGATGCTTAAGT+GGG | - | chr4_4:70725204-70725223 | None:intergenic | 25.0% |
| ! | GACATTCATCATATAATCTT+TGG | - | chr4_4:70725281-70725300 | None:intergenic | 25.0% |
| ! | TTTATATCTTTCGTTTGTCT+TGG | - | chr4_4:70725401-70725420 | None:intergenic | 25.0% |
| !! | ATTTGTTGACCTCAAAATTT+GGG | + | chr4_4:70725500-70725519 | Msa0699930:intron | 25.0% |
| ! | AAAATTGGAATTAAGTAGTG+GGG | + | chr4_4:70725762-70725781 | Msa0699930:intron | 25.0% |
| ! | ATGTGAATTGTATATATTGC+AGG | + | chr4_4:70725792-70725811 | Msa0699930:intron | 25.0% |
| ! | AATGCTTGCAAAAAAAGAAA+TGG | + | chr4_4:70725828-70725847 | Msa0699930:CDS | 25.0% |
| ! | CTATACAAGTTAAAAACTGA+TGG | - | chr4_4:70725892-70725911 | None:intergenic | 25.0% |
| ! | ATTTATCTTAAGATGGTAAG+GGG | - | chr4_4:70725992-70726011 | None:intergenic | 25.0% |
| ! | CATTTATCTTAAGATGGTAA+GGG | - | chr4_4:70725993-70726012 | None:intergenic | 25.0% |
| ! | TCATTTATCTTAAGATGGTA+AGG | - | chr4_4:70725994-70726013 | None:intergenic | 25.0% |
| ! | TCTTCTCATTTATCTTAAGA+TGG | - | chr4_4:70725999-70726018 | None:intergenic | 25.0% |
| ! | TGAAAGATACACTAGTATAT+AGG | - | chr4_4:70726075-70726094 | None:intergenic | 25.0% |
| GAAGAAGAAGAATTTGAACT+TGG | + | chr4_4:70723584-70723603 | Msa0699930:CDS | 30.0% | |
| AAAGAAGAAGAAGAAGAAGA+AGG | + | chr4_4:70723784-70723803 | Msa0699930:CDS | 30.0% | |
| ! | GTTTTGCTTATAAATGTGAC+CGG | - | chr4_4:70724230-70724249 | None:intergenic | 30.0% |
| ! | CGGATTACTCAAAAAACTTT+TGG | - | chr4_4:70724554-70724573 | None:intergenic | 30.0% |
| !!! | GTTTTTTGAGTAATCCGTTT+TGG | + | chr4_4:70724557-70724576 | Msa0699930:intron | 30.0% |
| TTGAATGAAAGTTTGGTTGA+GGG | - | chr4_4:70724625-70724644 | None:intergenic | 30.0% | |
| AGAGATTCAGAAATTACTCA+AGG | + | chr4_4:70724729-70724748 | Msa0699930:intron | 30.0% | |
| ! | AAGCATTTTCTTTCCACAAT+GGG | - | chr4_4:70724947-70724966 | None:intergenic | 30.0% |
| ACAAGAATTAAAGAGAGAGA+GGG | - | chr4_4:70725002-70725021 | None:intergenic | 30.0% | |
| TCTCTCTCTTTAATTCTTGT+GGG | + | chr4_4:70725002-70725021 | Msa0699930:intron | 30.0% | |
| !! | CTTCATTTTTGATGCTTAAG+TGG | - | chr4_4:70725205-70725224 | None:intergenic | 30.0% |
| ! | ATGAAGTGTTATGTTGTAGA+TGG | + | chr4_4:70725219-70725238 | Msa0699930:intron | 30.0% |
| ! | TTTCTCTCACTTGTCTTTTA+GGG | - | chr4_4:70725306-70725325 | None:intergenic | 30.0% |
| ! | TTTTCTCTCACTTGTCTTTT+AGG | - | chr4_4:70725307-70725326 | None:intergenic | 30.0% |
| !!! | CAAATTTTGAGGTCAACAAA+TGG | - | chr4_4:70725501-70725520 | None:intergenic | 30.0% |
| ! | CATTTGTTGACCTCAAAATT+TGG | + | chr4_4:70725499-70725518 | Msa0699930:intron | 30.0% |
| ! | TAAGGTGAGTTGAAAAAGAA+TGG | - | chr4_4:70725601-70725620 | None:intergenic | 30.0% |
| AATAGCATCATCATCTAGTT+AGG | + | chr4_4:70725639-70725658 | Msa0699930:intron | 30.0% | |
| TTGCAAAAAAAGAAATGGTG+AGG | + | chr4_4:70725833-70725852 | Msa0699930:CDS | 30.0% | |
| ! | TTAAAAACTGATGGTGAAGA+TGG | - | chr4_4:70725883-70725902 | None:intergenic | 30.0% |
| ACTAGTGTATCTTTCAACAA+AGG | + | chr4_4:70726079-70726098 | Msa0699930:three_prime_UTR | 30.0% | |
| CTAGTGTATCTTTCAACAAA+GGG | + | chr4_4:70726080-70726099 | Msa0699930:three_prime_UTR | 30.0% | |
| !! | CAATAAACAGTGAAGTGTTG+TGG | - | chr4_4:70723535-70723554 | None:intergenic | 35.0% |
| TCTTTCTTCCAAGAGAGTTA+TGG | - | chr4_4:70723563-70723582 | None:intergenic | 35.0% | |
| CAAATATCAGAAATGGAAGG+AGG | - | chr4_4:70723624-70723643 | None:intergenic | 35.0% | |
| GGACAAATATCAGAAATGGA+AGG | - | chr4_4:70723627-70723646 | None:intergenic | 35.0% | |
| AATCTTGCCATCATAGACAA+TGG | - | chr4_4:70723854-70723873 | None:intergenic | 35.0% | |
| TTGCTTATAAATGTGACTGG+AGG | + | chr4_4:70724093-70724112 | Msa0699930:intron | 35.0% | |
| TGCTTATAAATGTGACTGGA+GGG | + | chr4_4:70724094-70724113 | Msa0699930:intron | 35.0% | |
| !! | TTTTTCTGGTGTACTTTCTC+CGG | - | chr4_4:70724362-70724381 | None:intergenic | 35.0% |
| CTCTAAATCAACTACCTACA+AGG | - | chr4_4:70724596-70724615 | None:intergenic | 35.0% | |
| ! | CTTGTAGGTAGTTGATTTAG+AGG | + | chr4_4:70724594-70724613 | Msa0699930:intron | 35.0% |
| CTTGAATGAAAGTTTGGTTG+AGG | - | chr4_4:70724626-70724645 | None:intergenic | 35.0% | |
| TGAGAGCTTGAATGAAAGTT+TGG | - | chr4_4:70724632-70724651 | None:intergenic | 35.0% | |
| ! | AATAGTTAGAGCATCCACAA+TGG | + | chr4_4:70724881-70724900 | Msa0699930:intron | 35.0% |
| ! | AGCATTTTCTTTCCACAATG+GGG | - | chr4_4:70724946-70724965 | None:intergenic | 35.0% |
| ! | CAAGCATTTTCTTTCCACAA+TGG | - | chr4_4:70724948-70724967 | None:intergenic | 35.0% |
| CATTGTGGAAAGAAAATGCT+TGG | + | chr4_4:70724946-70724965 | Msa0699930:intron | 35.0% | |
| CACAAGAATTAAAGAGAGAG+AGG | - | chr4_4:70725003-70725022 | None:intergenic | 35.0% | |
| CTCTCTCTCTTTAATTCTTG+TGG | + | chr4_4:70725001-70725020 | Msa0699930:intron | 35.0% | |
| !!! | ATTAATTTTTTCTGCGGTGC+TGG | + | chr4_4:70725103-70725122 | Msa0699930:intron | 35.0% |
| !!! | TTAATTTTTTCTGCGGTGCT+GGG | + | chr4_4:70725104-70725123 | Msa0699930:intron | 35.0% |
| ! | ATAGTTGTGCCCAAATTTTG+AGG | - | chr4_4:70725512-70725531 | None:intergenic | 35.0% |
| TCTCTTGAGTGATCACAATA+TGG | - | chr4_4:70725714-70725733 | None:intergenic | 35.0% | |
| AATTGTATATATTGCAGGCC+AGG | + | chr4_4:70725797-70725816 | Msa0699930:intron | 35.0% | |
| TTCTCCAAAAGAGGAAGAAT+CGG | + | chr4_4:70725953-70725972 | Msa0699930:CDS | 35.0% | |
| AATTTCACAGCATGTCTACA+AGG | - | chr4_4:70726162-70726181 | None:intergenic | 35.0% | |
| CAGTTTATGCCCATTGTTTA+AGG | + | chr4_4:70726214-70726233 | Msa0699930:three_prime_UTR | 35.0% | |
| ACAGAACCGTAGAATTTCTT+TGG | - | chr4_4:70726252-70726271 | None:intergenic | 35.0% | |
| !! | AAACAGTGAAGTGTTGTGGA+CGG | - | chr4_4:70723531-70723550 | None:intergenic | 40.0% |
| TTGTCTCTCCATAACTCTCT+TGG | + | chr4_4:70723552-70723571 | Msa0699930:five_prime_UTR | 40.0% | |
| CGTGGGACAAATATCAGAAA+TGG | - | chr4_4:70723631-70723650 | None:intergenic | 40.0% | |
| GATGAAGAAGATGCTTACGT+GGG | - | chr4_4:70723648-70723667 | None:intergenic | 40.0% | |
| AGATGAAGAAGATGCTTACG+TGG | - | chr4_4:70723649-70723668 | None:intergenic | 40.0% | |
| TGTACTACTTGGGAAATACG+TGG | + | chr4_4:70723706-70723725 | Msa0699930:intron | 40.0% | |
| GGAAATACGTGGTTCCAATT+AGG | + | chr4_4:70723717-70723736 | Msa0699930:intron | 40.0% | |
| ! | TGCTGCTTATGATCTTCTTG+TGG | - | chr4_4:70723817-70723836 | None:intergenic | 40.0% |
| AAGATCATAAGCAGCAGTAC+AGG | + | chr4_4:70723821-70723840 | Msa0699930:CDS | 40.0% | |
| CCATCATAGACAATGGTCAA+CGG | - | chr4_4:70723847-70723866 | None:intergenic | 40.0% | |
| ACAATAATGCATACTCCCTC+CGG | + | chr4_4:70724208-70724227 | Msa0699930:intron | 40.0% | |
| TGCTTATAAATGTGACCGGA+GGG | - | chr4_4:70724226-70724245 | None:intergenic | 40.0% | |
| TTGCTTATAAATGTGACCGG+AGG | - | chr4_4:70724227-70724246 | None:intergenic | 40.0% | |
| !!! | AACTTTTGGTGACGTTCAAG+AGG | - | chr4_4:70724540-70724559 | None:intergenic | 40.0% |
| TCAAGGAGAGTTTGATCAAG+AGG | + | chr4_4:70724746-70724765 | Msa0699930:intron | 40.0% | |
| !! | ATGGGGGTGCTTATTAATTC+TGG | - | chr4_4:70724929-70724948 | None:intergenic | 40.0% |
| ATTAATAAGCACCCCCATTG+TGG | + | chr4_4:70724931-70724950 | Msa0699930:intron | 40.0% | |
| ! | GCATTTTCTTTCCACAATGG+GGG | - | chr4_4:70724945-70724964 | None:intergenic | 40.0% |
| ! | TTGGTGCTTACAGAGAAATG+TGG | + | chr4_4:70724965-70724984 | Msa0699930:intron | 40.0% |
| CCAACTTCACTTCATTCACA+AGG | - | chr4_4:70725455-70725474 | None:intergenic | 40.0% | |
| CCTTGTGAATGAAGTGAAGT+TGG | + | chr4_4:70725452-70725471 | Msa0699930:intron | 40.0% | |
| ACAAATGGATGCAGTGCATT+TGG | - | chr4_4:70725486-70725505 | None:intergenic | 40.0% | |
| AGCATCATCATCTAGTTAGG+AGG | + | chr4_4:70725642-70725661 | Msa0699930:intron | 40.0% | |
| TGCAAGCATTAAAATGGACC+TGG | - | chr4_4:70725818-70725837 | None:intergenic | 40.0% | |
| !! | GCATGGAAAGAGAAGTACTT+GGG | - | chr4_4:70725915-70725934 | None:intergenic | 40.0% |
| !! | TGCATGGAAAGAGAAGTACT+TGG | - | chr4_4:70725916-70725935 | None:intergenic | 40.0% |
| ! | GAATCCGATTCTTCCTCTTT+TGG | - | chr4_4:70725960-70725979 | None:intergenic | 40.0% |
| CCGTTGACCATTGTCTATGA+TGG | + | chr4_4:70723844-70723863 | Msa0699930:CDS | 45.0% | |
| TGAACACACCTGAATCTCAG+TGG | - | chr4_4:70723890-70723909 | None:intergenic | 45.0% | |
| TGCAGGTCTTACTACACATG+TGG | + | chr4_4:70724437-70724456 | Msa0699930:intron | 45.0% | |
| GAGAACAGGTCTCTCCAAAA+CGG | - | chr4_4:70724574-70724593 | None:intergenic | 45.0% | |
| CAACTACCTACAAGGAGAAC+AGG | - | chr4_4:70724588-70724607 | None:intergenic | 45.0% | |
| ! | AGTTAGAGCATCCACAATGG+TGG | + | chr4_4:70724884-70724903 | Msa0699930:intron | 45.0% |
| ! | GTTAGAGCATCCACAATGGT+GGG | + | chr4_4:70724885-70724904 | Msa0699930:intron | 45.0% |
| ! | CCTCTGCAACGATTTTTGCA+TGG | - | chr4_4:70725932-70725951 | None:intergenic | 45.0% |
| CCATGCAAAAATCGTTGCAG+AGG | + | chr4_4:70725929-70725948 | Msa0699930:CDS | 45.0% | |
| TGCAGAGGTTTCTCCAAAAG+AGG | + | chr4_4:70725944-70725963 | Msa0699930:CDS | 45.0% | |
| GACTGATGCCACTGAGATTC+AGG | + | chr4_4:70723879-70723898 | Msa0699930:CDS | 50.0% | |
| GAGAGACCTGTTCTCCTTGT+AGG | + | chr4_4:70724579-70724598 | Msa0699930:intron | 50.0% | |
| AGGTGAAGAACCCACCATTG+TGG | - | chr4_4:70724898-70724917 | None:intergenic | 50.0% | |
| !!! | TTTTTTCTGCGGTGCTGGGT+TGG | + | chr4_4:70725108-70725127 | Msa0699930:intron | 50.0% |
| GAAATGGTGAGGACACCAAC+TGG | + | chr4_4:70725844-70725863 | Msa0699930:CDS | 50.0% | |
| ! | GGCTCTGATGATGATCCAGT+TGG | - | chr4_4:70725862-70725881 | None:intergenic | 50.0% |
| ! | CGGTGCTGGGTTGGAGAAAT+TGG | + | chr4_4:70725117-70725136 | Msa0699930:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 70723495 | 70726280 | 70723495 | ID=Msa0699930;Name=Msa0699930 |
| chr4_4 | mRNA | 70723495 | 70726280 | 70723495 | ID=Msa0699930-mRNA-1;Parent=Msa0699930;Name=Msa0699930-mRNA-1;_AED=0.12;_eAED=0.12;_QI=87|1|1|1|1|1|3|257|132 |
| chr4_4 | exon | 70723495 | 70723649 | 70723495 | ID=Msa0699930-mRNA-1:exon:21439;Parent=Msa0699930-mRNA-1 |
| chr4_4 | exon | 70723780 | 70723900 | 70723780 | ID=Msa0699930-mRNA-1:exon:21440;Parent=Msa0699930-mRNA-1 |
| chr4_4 | exon | 70725814 | 70726280 | 70725814 | ID=Msa0699930-mRNA-1:exon:21441;Parent=Msa0699930-mRNA-1 |
| chr4_4 | five_prime_UTR | 70723495 | 70723581 | 70723495 | ID=Msa0699930-mRNA-1:five_prime_utr;Parent=Msa0699930-mRNA-1 |
| chr4_4 | CDS | 70723582 | 70723649 | 70723582 | ID=Msa0699930-mRNA-1:cds;Parent=Msa0699930-mRNA-1 |
| chr4_4 | CDS | 70723780 | 70723900 | 70723780 | ID=Msa0699930-mRNA-1:cds;Parent=Msa0699930-mRNA-1 |
| chr4_4 | CDS | 70725814 | 70726023 | 70725814 | ID=Msa0699930-mRNA-1:cds;Parent=Msa0699930-mRNA-1 |
| chr4_4 | three_prime_UTR | 70726024 | 70726280 | 70726024 | ID=Msa0699930-mRNA-1:three_prime_utr;Parent=Msa0699930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
