AlfalfaGEDB | Msa0702990

M. sativa cultivar zhongmu-4 / Msa0702990

KEGG: K11446
GO: GO:0000003 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008214 GO:0008276 GO:0009314 GO:0009416 GO:0009555 GO:0009628 GO:0009648 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010154 GO:0010216 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032502 GO:0034641 GO:0034647 GO:0034720 GO:0034721 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048316 GO:0048519 GO:0048523 GO:0048573 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
PFAM: PF02375.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0702990	XP_024628887.2	95.175	1057	33	1	1	1057	24	1062	0.0	2087

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0702990	sp\|C0SUT9\|JMJ16_ARATH	43.461	1017	480	16	14	954	127	1124	0.0	765

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0702990	G7L9K9	94.229	1057	49	2	1	1057	1	1045	0.0	1988

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TFs/TRs:

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Gene ID	Type	Classification
Msa0702990	TR	Jumonji

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0702990	MtrunA17_Chr8g0380981	94.381	1050	34	2	15	1057	25	1056	0.0	1980
Msa0702990	MtrunA17_Chr2g0303101	59.603	1057	347	15	2	1054	21	1001	0.0	1152
Msa0702990	MtrunA17_Chr1g0189211	57.092	564	235	2	14	574	131	690	0.0	671
Msa0702990	MtrunA17_Chr1g0189211	29.042	334	179	6	732	1054	941	1227	1.41e-36	150
Msa0702990	MtrunA17_Chr7g0261401	43.304	575	310	7	15	575	99	671	1.21e-149	467
Msa0702990	MtrunA17_Chr5g0397501	38.964	444	225	6	136	568	288	696	1.69e-85	302
Msa0702990	MtrunA17_Chr5g0397501	50.000	74	33	1	28	101	23	92	3.35e-14	77.8
Msa0702990	MtrunA17_Chr5g0410721	37.376	404	172	11	30	421	86	420	9.59e-61	223
Msa0702990	MtrunA17_Chr1g0164731	36.693	387	172	9	29	407	41	362	5.47e-56	204
Msa0702990	MtrunA17_Chr3g0116441	34.988	403	191	10	33	425	18	359	1.32e-52	202

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0702990	AT1G08620.2	43.461	1017	480	16	14	954	127	1124	0.0	765
Msa0702990	AT1G08620.4	43.461	1017	480	16	14	954	127	1124	0.0	765
Msa0702990	AT1G08620.1	43.461	1017	480	16	14	954	127	1124	0.0	765
Msa0702990	AT1G08620.3	43.461	1017	480	16	14	954	141	1138	0.0	765
Msa0702990	AT4G20400.1	59.612	567	224	3	2	566	25	588	0.0	717
Msa0702990	AT4G20400.1	39.216	255	105	4	803	1053	743	951	1.32e-42	169
Msa0702990	AT1G30810.3	62.238	572	206	5	2	570	28	592	0.0	706
Msa0702990	AT1G30810.3	45.854	205	80	4	788	992	646	819	3.09e-45	176
Msa0702990	AT1G30810.2	62.238	572	206	5	2	570	28	592	0.0	706
Msa0702990	AT1G30810.2	45.854	205	80	4	788	992	646	819	3.09e-45	176

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Find 234 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGAGAATTACAAAGA+AGG	0.549929	4_4:-74842663	Msa0702990:CDS
AAAAGATCGCCTTCTTGTAC+AGG	0.472566	4_4:-74842639	Msa0702990:CDS
AAAATCTAAAATGTTTAAAT+TGG	0.189270	4_4:-74843266	Msa0702990:CDS
AAACTGAGAATTACAAAGAA+GGG	0.521718	4_4:-74842662	Msa0702990:CDS
AAAGGGCCAAGAAATCCAGC+AGG	0.615665	4_4:+74841808	None:intergenic
AAAGTATGGTATGGTGTACC+TGG	0.475229	4_4:-74843937	Msa0702990:CDS
AAATATATTCCAGGTTACTT+TGG	0.419381	4_4:-74841652	Msa0702990:CDS
AAATTGTCCCTCCAGCATGC+TGG	0.482121	4_4:-74845229	Msa0702990:CDS
AACATAGAACTTAGTGCTGG+TGG	0.608237	4_4:-74842294	Msa0702990:CDS
AACCACGTGCAATAGAAGCG+TGG	0.625238	4_4:-74842767	Msa0702990:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATCTCTTTCTCCTTAAGA+GGG	+	chr4_4:74841470-74841489	None:intergenic	30.0%
TCTTAAGGAGAAAGAGATAT+GGG	-	chr4_4:74841470-74841489	Msa0702990:CDS	30.0%
TCTGAATCTGATGATAAGTT+TGG	-	chr4_4:74841657-74841676	Msa0702990:CDS	30.0%
ATAAGTTTGGATTCCAATCA+GGG	-	chr4_4:74841670-74841689	Msa0702990:CDS	30.0%
AATTCTTTAAGTGTGAAGTC+TGG	+	chr4_4:74841696-74841715	None:intergenic	30.0%
ATACAAATCTGAATCACTCT+CGG	+	chr4_4:74842037-74842056	None:intergenic	30.0%
TCACTTAATTATTTGCACTG+GGG	-	chr4_4:74842695-74842714	Msa0702990:CDS	30.0%
TTGTTCACGAATTATGTACA+TGG	+	chr4_4:74842900-74842919	None:intergenic	30.0%
TTAAATTGGAGAAATGCTTG+TGG	-	chr4_4:74843410-74843429	Msa0702990:CDS	30.0%
TAAATTGGAGAAATGCTTGT+GGG	-	chr4_4:74843411-74843430	Msa0702990:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	74840972	74845712	74840972	ID=Msa0702990;Name=Msa0702990
chr4_4	mRNA	74840972	74845712	74840972	ID=Msa0702990-mRNA-1;Parent=Msa0702990;Name=Msa0702990-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0.22\|0.1\|1\|0.88\|0.7\|10\|0\|1057
chr4_4	exon	74845668	74845712	74845668	ID=Msa0702990-mRNA-1:exon:23357;Parent=Msa0702990-mRNA-1
chr4_4	exon	74845410	74845487	74845410	ID=Msa0702990-mRNA-1:exon:23356;Parent=Msa0702990-mRNA-1
chr4_4	exon	74844806	74845318	74844806	ID=Msa0702990-mRNA-1:exon:23355;Parent=Msa0702990-mRNA-1
chr4_4	exon	74844496	74844717	74844496	ID=Msa0702990-mRNA-1:exon:23354;Parent=Msa0702990-mRNA-1
chr4_4	exon	74843852	74844013	74843852	ID=Msa0702990-mRNA-1:exon:23353;Parent=Msa0702990-mRNA-1
chr4_4	exon	74843221	74843589	74843221	ID=Msa0702990-mRNA-1:exon:23352;Parent=Msa0702990-mRNA-1
chr4_4	exon	74842004	74843066	74842004	ID=Msa0702990-mRNA-1:exon:23351;Parent=Msa0702990-mRNA-1
chr4_4	exon	74841784	74841904	74841784	ID=Msa0702990-mRNA-1:exon:23350;Parent=Msa0702990-mRNA-1
chr4_4	exon	74841464	74841698	74841464	ID=Msa0702990-mRNA-1:exon:23349;Parent=Msa0702990-mRNA-1
chr4_4	exon	74840972	74841337	74840972	ID=Msa0702990-mRNA-1:exon:23348;Parent=Msa0702990-mRNA-1
chr4_4	CDS	74845668	74845712	74845668	ID=Msa0702990-mRNA-1:cds;Parent=Msa0702990-mRNA-1
chr4_4	CDS	74845410	74845487	74845410	ID=Msa0702990-mRNA-1:cds;Parent=Msa0702990-mRNA-1
chr4_4	CDS	74844806	74845318	74844806	ID=Msa0702990-mRNA-1:cds;Parent=Msa0702990-mRNA-1
chr4_4	CDS	74844496	74844717	74844496	ID=Msa0702990-mRNA-1:cds;Parent=Msa0702990-mRNA-1
chr4_4	CDS	74843852	74844013	74843852	ID=Msa0702990-mRNA-1:cds;Parent=Msa0702990-mRNA-1
chr4_4	CDS	74843221	74843589	74843221	ID=Msa0702990-mRNA-1:cds;Parent=Msa0702990-mRNA-1
chr4_4	CDS	74842004	74843066	74842004	ID=Msa0702990-mRNA-1:cds;Parent=Msa0702990-mRNA-1
chr4_4	CDS	74841784	74841904	74841784	ID=Msa0702990-mRNA-1:cds;Parent=Msa0702990-mRNA-1
chr4_4	CDS	74841464	74841698	74841464	ID=Msa0702990-mRNA-1:cds;Parent=Msa0702990-mRNA-1
chr4_4	CDS	74840972	74841337	74840972	ID=Msa0702990-mRNA-1:cds;Parent=Msa0702990-mRNA-1

Gene Sequence

>Msa0702990

ATGGAAAATACACTTGAATCTTCCATCAATCCACAACACAAAAAGATATCATCCAGATGGGATCCAGTCGAAGCATGTCGGCCTATAATCGGTGAAACACCTGTGTTTTATCCAACGTTTGAGGAGTTTGAAGATACGCTTGGTTACCTAGCTAAGATACGTCCCTTAGCTGAACCATATGGCATATGTAAAATTGTCCCTCCAGCATGCTGGGCTCCACCTTGCCCTCTTAAGGAGAAAGAGATATGGGAAAATGCTAAATTTCCGACCCGTATTCAGCAAGTTGATTTGCTTCAGAACCGAGAGCCGATGAGGAAGAAAAGTAGGGCAAGGAAACGAAAACGTGGAAAGCAGTCAAAGATGGGAACGTGTAATAGGAGAACTGGAAATTCATGTTCTGAAGCTAATGCTACTTCTGAATCTGATGATAAGTTTGGATTCCAATCAGGGCCAGACTTCACACTTAAAGAATTTCAGCAATATGGAAATTCTTTTAAAGATTGCTACTTCGGGTTGAGTGATGCCAAAGATGGTAAAGGTAGTGATAATAATCACCACGAGAGACGGGAACCGTCTTTGGAGGATATTGAAGGTGAATACTGGCGAATAATAGAGAAACCGACTGATGAGGTCGAGGTGTATTATGGAGCTGACTTGGAAACTGGAGCACTTGGAAGTGGTTTTCCTAAGACATCATCCTTAACCGAGAGTGATTCAGATTTGTATGCTATGTCTGGCTGGAATTTGAATAACTTTGCACGACTTCCAGGTTCTGCATTATGTTTTGAAGGAAGTGACATCTCAGGGGTTTTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTTTGCTGGCATGTTGAAGATCATCACCTCTATTCACTTAATTATTTGCACTGGGGTGACCCAAAAGTATGGTATGGTGTACCTGGGAGCCATGCTTCAGCTATAGAAGATGCAATGAGGAAACATTTGCCTGATTTGTTTGAAGAGCAGCCAAATCTACTCAACGAGTTGGTGACTCAGTTCTCTCCTTCAATACTCAAGTCTGAGGAGGTTCCTGTGTATCGAACTGTCCAGCATTCTGGGGAATTTGTTATCACGTTTCCAAGGGCATACCACTGTGGCTTCAGCAGTGGCTTCAATTGTGCAGAGGCTGTGAATGTGGCTCCATATGATTGGTTTATGCATGGTCAGAACGCTGCAGAGATTTACAGTCTACAGTGCCGTAAGACATCCTTGTCCCATGATAAGTTGTTATTTGGATCTGCTAAGGAAGCTGTACATGGCCTTTCAGAGACAACTCTTCATGGAAAAGAAAATCTAAAATGTTTAAATTGGAGAAATGCTTGTGGGAAAGATGGTGTTCTTACCAATGCAGTTAAGACAAGGATAATGATGGAAAAAGAGAGGCTTGAATGGCTTCCGGATCATTTAAAGATGCTGAAGATGGACAATGACTTCGATTCGGTTGAGGAAAGGGAATGTTACTATTGCTTCTATGACTTGCACCTCTCTGCTGTTGGTTGCGAGTGCTTTCCTGACAACTATTCTTGTCTTAGACATTTCAAGTTGTTTTGCTCATGTGAAATGGATAAAAGATTTGTTCTGGTTCGTTATACAATAGATGAGCTAAGTACATTGGTTGAAGCATTAGAAGGAAAACCACGTGCAATAGAAGCGTGGGAAACTAGAAACATTGGAGTTGTTTCTGCTAGTGTTGAGGATGCTTGCATGCACGAACAAGATATGGAGAGAGTCATGTGCAAAACTGAGAATTACAAAGAAGGGAAAAGATCGCCTTCTTGTACAGGAACTAATGAGAGGTTAAATTCAAATTTACCTAGCAGTCCTCACAGTCACATTTCTTCAGAGTTGGTCCATTCAGAGTCTCATCATGAAACTTCTCGTACACCTTATGTGGATCTGACTGGTGATATGGACAACTTGAATGATACTATGTTGGTCATGGACAATAAAGTTAAGGAGGATAAGGGAAGTTCTTTGTATTTGAATATTGGTGATATCTCTGATAAACCTGCAAATTCTTTGCTAAATATAGCCGAAATCCGTCACAATAAGTGTGTTCCATATGCGGAAAAAGTTACTAGTGCAGAGATCAGAAAAGAACGAGACAACATAGAACTTAGTGCTGGTGGTATTTCTGTCTTGGAAAATGAACCTTCACCATGTCCAACTAATGTTCGAAATTCCGGTACACTTGATGGTTGTAAATTGTTTGGTGTCAATCTGCAAATGCACTCAGATTTAGGACAGAAACTTAATAGTATGCTTGAAACGGGAGTTCTAGACACCTCCAATACAAGTATATCTTTGACAAACCAAAGCTCCCCAATGAAAAAGTTTAGTATTTCGGCTGAGCTTGTTAGTTTGGGATCTGTTGTGTATGGAAAACATTGGTGCAGTAAGCATGCAATATATCCAAAAGGATTCAAGAGTCGTGTAAAGTTCTTTAGCATTCTTGATCCATCAAGCATCTGTAACTATGTTTGTGAAGTCATTCCTGCTGGATTTCTTGGCCCTTTTTTCAGGGTATCATTCCTGACCTTTATATTTCTTTCTCTTTCAATAAAAAATATATTCCAGGTTACTTTGGAAGAACACCCCAACGAGGTTTTCACAAACACCTCAGCAGATAAGTGCTGGGAATCTGTTATTGATAGACTAAACTATGAAATAAATAAGCGCAAGAGTCTCGGTGAACTAGACATGCCTCCCTTGGAGCTACTGCACAACATCAATGGTCATAAAATGTTTGGATTCCTTTCGCCATCCATTATTCAGTCCATTGAAGCTCAAGATCCCAGTCATGAATGTGTAGGGTACTGGAATCACAAACAAGTTAATTCTGGATCTTCAGGCAAAGCCATTGATGACTCTAAGTTAACTTGTGGTTCAAGTAATAGCTCTCTAGGTGACTCGAGGACCAAACTTTTTGGTGTCGATTTGATAAAGCTGGAGGAGGATGACATAGGAGAAAGTTCTCATTCGTTTGAAGAGATGAAGTTGATTCTAGAAAGATTCCTGAAAAAGGGAAGTCCTGACGAGTTACGAGCAATGCGTCAGTTATTCAGTTCTGATGCACAATTGACTCAGTGGAGACCTGCGCTGAAAGTGCTGATAGAGAAAATCCAGAAAGATTGTGAATAA

Protein sequence

>Msa0702990

MENTLESSINPQHKKISSRWDPVEACRPIIGETPVFYPTFEEFEDTLGYLAKIRPLAEPYGICKIVPPACWAPPCPLKEKEIWENAKFPTRIQQVDLLQNREPMRKKSRARKRKRGKQSKMGTCNRRTGNSCSEANATSESDDKFGFQSGPDFTLKEFQQYGNSFKDCYFGLSDAKDGKGSDNNHHERREPSLEDIEGEYWRIIEKPTDEVEVYYGADLETGALGSGFPKTSSLTESDSDLYAMSGWNLNNFARLPGSALCFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHASAIEDAMRKHLPDLFEEQPNLLNELVTQFSPSILKSEEVPVYRTVQHSGEFVITFPRAYHCGFSSGFNCAEAVNVAPYDWFMHGQNAAEIYSLQCRKTSLSHDKLLFGSAKEAVHGLSETTLHGKENLKCLNWRNACGKDGVLTNAVKTRIMMEKERLEWLPDHLKMLKMDNDFDSVEERECYYCFYDLHLSAVGCECFPDNYSCLRHFKLFCSCEMDKRFVLVRYTIDELSTLVEALEGKPRAIEAWETRNIGVVSASVEDACMHEQDMERVMCKTENYKEGKRSPSCTGTNERLNSNLPSSPHSHISSELVHSESHHETSRTPYVDLTGDMDNLNDTMLVMDNKVKEDKGSSLYLNIGDISDKPANSLLNIAEIRHNKCVPYAEKVTSAEIRKERDNIELSAGGISVLENEPSPCPTNVRNSGTLDGCKLFGVNLQMHSDLGQKLNSMLETGVLDTSNTSISLTNQSSPMKKFSISAELVSLGSVVYGKHWCSKHAIYPKGFKSRVKFFSILDPSSICNYVCEVIPAGFLGPFFRVSFLTFIFLSLSIKNIFQVTLEEHPNEVFTNTSADKCWESVIDRLNYEINKRKSLGELDMPPLELLHNINGHKMFGFLSPSIIQSIEAQDPSHECVGYWNHKQVNSGSSGKAIDDSKLTCGSSNSSLGDSRTKLFGVDLIKLEEDDIGESSHSFEEMKLILERFLKKGSPDELRAMRQLFSSDAQLTQWRPALKVLIEKIQKDCE*