Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705340 | XP_024627503.1 | 62.559 | 211 | 61 | 4 | 17 | 225 | 156 | 350 | 1.57e-70 | 229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705340 | sp|Q9S840|SPL2_ARATH | 69.444 | 72 | 22 | 0 | 17 | 88 | 174 | 245 | 5.47e-28 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705340 | A0A072TSV9 | 56.410 | 234 | 69 | 4 | 17 | 227 | 137 | 360 | 5.46e-70 | 228 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0705340 | TF | SBP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705340 | MtrunA17_Chr8g0377421 | 71.545 | 123 | 30 | 1 | 17 | 139 | 137 | 254 | 5.51e-55 | 177 |
| Msa0705340 | MtrunA17_Chr3g0122411 | 44.492 | 236 | 86 | 7 | 17 | 226 | 170 | 386 | 7.19e-50 | 168 |
| Msa0705340 | MtrunA17_Chr8g0377401 | 67.143 | 70 | 23 | 0 | 17 | 86 | 167 | 236 | 4.29e-26 | 101 |
| Msa0705340 | MtrunA17_Chr8g0360361 | 57.500 | 80 | 34 | 0 | 17 | 96 | 70 | 149 | 1.07e-25 | 98.6 |
| Msa0705340 | MtrunA17_Chr3g0132091 | 42.373 | 118 | 61 | 1 | 11 | 128 | 72 | 182 | 3.00e-25 | 101 |
| Msa0705340 | MtrunA17_Chr4g0046991 | 62.319 | 69 | 26 | 0 | 17 | 85 | 78 | 146 | 2.05e-23 | 92.0 |
| Msa0705340 | MtrunA17_Chr4g0061651 | 30.964 | 197 | 102 | 5 | 17 | 213 | 128 | 290 | 2.06e-23 | 97.4 |
| Msa0705340 | MtrunA17_Chr8g0386271 | 50.000 | 92 | 46 | 0 | 9 | 100 | 96 | 187 | 3.24e-23 | 96.3 |
| Msa0705340 | MtrunA17_Chr1g0162871 | 51.724 | 87 | 37 | 1 | 10 | 91 | 97 | 183 | 2.88e-22 | 94.7 |
| Msa0705340 | MtrunA17_Chr7g0231911 | 49.451 | 91 | 44 | 1 | 9 | 97 | 146 | 236 | 3.23e-22 | 92.4 |
| Msa0705340 | MtrunA17_Chr7g0258471 | 50.000 | 94 | 44 | 2 | 17 | 109 | 147 | 238 | 5.41e-22 | 93.2 |
| Msa0705340 | MtrunA17_Chr2g0302791 | 56.000 | 75 | 33 | 0 | 17 | 91 | 144 | 218 | 8.44e-22 | 93.6 |
| Msa0705340 | MtrunA17_Chr5g0420051 | 51.899 | 79 | 38 | 0 | 17 | 95 | 186 | 264 | 1.88e-21 | 91.7 |
| Msa0705340 | MtrunA17_Chr2g0308321 | 56.522 | 69 | 30 | 0 | 17 | 85 | 176 | 244 | 3.62e-21 | 91.3 |
| Msa0705340 | MtrunA17_Chr1g0194121 | 54.667 | 75 | 34 | 0 | 17 | 91 | 152 | 226 | 7.19e-21 | 90.9 |
| Msa0705340 | MtrunA17_Chr7g0224821 | 50.667 | 75 | 37 | 0 | 17 | 91 | 82 | 156 | 1.48e-20 | 88.6 |
| Msa0705340 | MtrunA17_Chr8g0334671 | 48.039 | 102 | 50 | 2 | 17 | 115 | 192 | 293 | 1.75e-20 | 87.8 |
| Msa0705340 | MtrunA17_Chr7g0270541 | 52.500 | 80 | 38 | 0 | 17 | 96 | 150 | 229 | 2.24e-20 | 89.4 |
| Msa0705340 | MtrunA17_Chr2g0282521 | 50.667 | 75 | 37 | 0 | 11 | 85 | 63 | 137 | 7.67e-20 | 82.4 |
| Msa0705340 | MtrunA17_Chr2g0286661 | 40.404 | 99 | 58 | 1 | 14 | 111 | 105 | 203 | 1.07e-16 | 78.6 |
| Msa0705340 | MtrunA17_Chr8g0377391 | 35.135 | 148 | 62 | 4 | 114 | 227 | 1 | 148 | 1.14e-14 | 69.3 |
| Msa0705340 | MtrunA17_Chr8g0377411 | 58.333 | 60 | 25 | 0 | 168 | 227 | 1 | 60 | 3.64e-13 | 63.5 |
| Msa0705340 | MtrunA17_Chr8g0377431 | 60.784 | 51 | 20 | 0 | 17 | 67 | 156 | 206 | 8.23e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705340 | AT5G43270.3 | 69.444 | 72 | 22 | 0 | 17 | 88 | 174 | 245 | 5.56e-29 | 112 |
| Msa0705340 | AT5G43270.1 | 69.444 | 72 | 22 | 0 | 17 | 88 | 174 | 245 | 5.56e-29 | 112 |
| Msa0705340 | AT5G43270.2 | 69.444 | 72 | 22 | 0 | 17 | 88 | 174 | 245 | 5.56e-29 | 112 |
| Msa0705340 | AT1G27370.6 | 45.385 | 130 | 56 | 3 | 17 | 141 | 181 | 300 | 5.49e-27 | 106 |
| Msa0705340 | AT1G27370.1 | 45.385 | 130 | 56 | 3 | 17 | 141 | 181 | 300 | 9.14e-27 | 106 |
| Msa0705340 | AT1G27370.5 | 45.385 | 130 | 56 | 3 | 17 | 141 | 181 | 300 | 9.14e-27 | 106 |
| Msa0705340 | AT1G27370.3 | 45.385 | 130 | 56 | 3 | 17 | 141 | 181 | 300 | 9.14e-27 | 106 |
| Msa0705340 | AT1G27370.2 | 45.385 | 130 | 56 | 3 | 17 | 141 | 181 | 300 | 9.14e-27 | 106 |
| Msa0705340 | AT1G27370.4 | 45.385 | 130 | 56 | 3 | 17 | 141 | 181 | 300 | 9.14e-27 | 106 |
| Msa0705340 | AT1G27370.7 | 45.385 | 130 | 56 | 3 | 17 | 141 | 181 | 300 | 9.14e-27 | 106 |
| Msa0705340 | AT1G27360.2 | 61.333 | 75 | 27 | 1 | 17 | 91 | 180 | 252 | 1.96e-24 | 100 |
| Msa0705340 | AT1G27360.1 | 61.333 | 75 | 27 | 1 | 17 | 91 | 180 | 252 | 1.96e-24 | 100 |
| Msa0705340 | AT1G27360.3 | 61.333 | 75 | 27 | 1 | 17 | 91 | 180 | 252 | 1.96e-24 | 100 |
| Msa0705340 | AT1G27360.4 | 61.333 | 75 | 27 | 1 | 17 | 91 | 180 | 252 | 1.96e-24 | 100 |
| Msa0705340 | AT1G76580.2 | 54.878 | 82 | 37 | 0 | 17 | 98 | 119 | 200 | 1.39e-22 | 95.9 |
| Msa0705340 | AT1G76580.3 | 54.878 | 82 | 37 | 0 | 17 | 98 | 119 | 200 | 1.53e-22 | 95.9 |
| Msa0705340 | AT1G76580.1 | 53.571 | 84 | 39 | 0 | 17 | 100 | 119 | 202 | 1.82e-22 | 95.9 |
| Msa0705340 | AT2G42200.1 | 54.667 | 75 | 34 | 0 | 17 | 91 | 79 | 153 | 2.96e-22 | 94.0 |
| Msa0705340 | AT3G60030.1 | 51.250 | 80 | 39 | 0 | 17 | 96 | 132 | 211 | 1.37e-21 | 93.2 |
| Msa0705340 | AT2G47070.1 | 56.164 | 73 | 32 | 0 | 17 | 89 | 111 | 183 | 2.31e-21 | 92.4 |
| Msa0705340 | AT1G53160.3 | 48.810 | 84 | 43 | 0 | 14 | 97 | 56 | 139 | 3.01e-21 | 87.0 |
| Msa0705340 | AT1G53160.2 | 48.810 | 84 | 43 | 0 | 14 | 97 | 56 | 139 | 4.30e-21 | 87.0 |
| Msa0705340 | AT1G53160.1 | 48.810 | 84 | 43 | 0 | 14 | 97 | 56 | 139 | 4.30e-21 | 87.0 |
| Msa0705340 | AT1G69170.1 | 57.971 | 69 | 29 | 0 | 17 | 85 | 129 | 197 | 7.72e-21 | 90.1 |
| Msa0705340 | AT5G50570.1 | 46.512 | 86 | 46 | 0 | 6 | 91 | 95 | 180 | 9.03e-21 | 89.7 |
| Msa0705340 | AT5G50570.2 | 46.512 | 86 | 46 | 0 | 6 | 91 | 95 | 180 | 9.03e-21 | 89.7 |
| Msa0705340 | AT5G50670.1 | 46.512 | 86 | 46 | 0 | 6 | 91 | 95 | 180 | 9.03e-21 | 89.7 |
| Msa0705340 | AT5G50670.2 | 46.512 | 86 | 46 | 0 | 6 | 91 | 95 | 180 | 9.03e-21 | 89.7 |
| Msa0705340 | AT2G33810.1 | 56.522 | 69 | 30 | 0 | 17 | 85 | 59 | 127 | 1.03e-20 | 84.7 |
| Msa0705340 | AT3G15270.1 | 56.522 | 69 | 30 | 0 | 17 | 85 | 68 | 136 | 1.46e-20 | 85.5 |
| Msa0705340 | AT1G20980.1 | 55.696 | 79 | 34 | 1 | 17 | 94 | 125 | 203 | 6.79e-20 | 88.2 |
| Msa0705340 | AT1G02065.1 | 56.757 | 74 | 32 | 0 | 17 | 90 | 193 | 266 | 1.82e-19 | 85.5 |
| Msa0705340 | AT3G57920.1 | 51.389 | 72 | 35 | 0 | 17 | 88 | 64 | 135 | 2.32e-17 | 80.1 |
| Msa0705340 | AT5G18830.3 | 41.860 | 86 | 49 | 1 | 3 | 88 | 129 | 213 | 1.71e-14 | 72.4 |
| Msa0705340 | AT5G18830.2 | 41.860 | 86 | 49 | 1 | 3 | 88 | 129 | 213 | 1.86e-14 | 72.4 |
| Msa0705340 | AT5G18830.1 | 41.860 | 86 | 49 | 1 | 3 | 88 | 129 | 213 | 1.87e-14 | 72.4 |
| Msa0705340 | AT2G47070.2 | 54.717 | 53 | 24 | 0 | 37 | 89 | 2 | 54 | 9.32e-13 | 67.4 |
Find 43 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTGGTTGCAAGGACTTT+GGG | 0.234821 | 4_4:-77919459 | None:intergenic |
| CAAGGACTTTGGGTGTAAAA+TGG | 0.294403 | 4_4:-77919449 | None:intergenic |
| TGACTTGATTGAACAGCTTC+AGG | 0.354854 | 4_4:-77918726 | None:intergenic |
| CAGCTTCAGGATGATGTTTA+CGG | 0.381039 | 4_4:-77918713 | None:intergenic |
| ACTCTTGGTTGCAAGGACTT+TGG | 0.395861 | 4_4:-77919460 | None:intergenic |
| CATCGAACTCAAACAGATCA+TGG | 0.408872 | 4_4:-77918641 | None:intergenic |
| ATCAATCCGTGGGATTCATA+TGG | 0.420490 | 4_4:+77919623 | Msa0705340:CDS |
| CTGACTCATTGCATGAGTTA+AGG | 0.427005 | 4_4:-77919699 | None:intergenic |
| ACACCAGCTATAACCACCTT+TGG | 0.433788 | 4_4:-77918405 | None:intergenic |
| GAAAGCATAGTGACAGTACT+TGG | 0.437282 | 4_4:-77919411 | None:intergenic |
| ACGTATGCGATGATAATCTT+TGG | 0.442176 | 4_4:-77918355 | None:intergenic |
| AAGGCTTGAACAGCACTGGC+TGG | 0.454584 | 4_4:-77919680 | None:intergenic |
| ATGTGACCTTGACCTTTCAT+TGG | 0.460005 | 4_4:+77918332 | Msa0705340:CDS |
| GCAGACTTTGAATTAGCAAA+TGG | 0.463595 | 4_4:-77919346 | None:intergenic |
| ATAGATTTCGGTTCTGCAGA+TGG | 0.485479 | 4_4:+77919307 | Msa0705340:intron |
| TATCCAAAGGTGGTTATAGC+TGG | 0.492634 | 4_4:+77918402 | Msa0705340:CDS |
| CACTTCTGTCAATCAATCCG+TGG | 0.500047 | 4_4:+77919612 | Msa0705340:CDS |
| GATTGATACTCTTGGTTGCA+AGG | 0.502105 | 4_4:-77919467 | None:intergenic |
| TCAATCCGTGGGATTCATAT+GGG | 0.506875 | 4_4:+77919624 | Msa0705340:CDS |
| ATCCTGTGTCATCTAAGTAT+TGG | 0.517680 | 4_4:+77918247 | Msa0705340:five_prime_UTR |
| ATAACCTGGATTGATACTCT+TGG | 0.533141 | 4_4:-77919475 | None:intergenic |
| GCTTTGTCTTCTTCATGCTG+TGG | 0.535922 | 4_4:+77918753 | Msa0705340:CDS |
| AAAGCATAGTGACAGTACTT+GGG | 0.540755 | 4_4:-77919410 | None:intergenic |
| ACGTCATATGTTCTGACCAT+TGG | 0.549860 | 4_4:-77918284 | None:intergenic |
| ATTTGAATGTTCTAGAGACA+TGG | 0.553549 | 4_4:-77919654 | None:intergenic |
| AGGCTTGAACAGCACTGGCT+GGG | 0.554739 | 4_4:-77919679 | None:intergenic |
| GGAAAGAAATGTACGTCCAA+TGG | 0.558417 | 4_4:+77918268 | Msa0705340:exon |
| AGTTAAGGCTTGAACAGCAC+TGG | 0.560262 | 4_4:-77919684 | None:intergenic |
| GATAATCTTTGGCCAATGAA+AGG | 0.562156 | 4_4:-77918344 | None:intergenic |
| AAAGGTGGTTATAGCTGGTG+TGG | 0.575359 | 4_4:+77918407 | Msa0705340:CDS |
| ACTTCTGTCAATCAATCCGT+GGG | 0.587510 | 4_4:+77919613 | Msa0705340:CDS |
| TTCCAATACTTAGATGACAC+AGG | 0.598827 | 4_4:-77918249 | None:intergenic |
| AGTCTGCTACAAATTTAGCC+TGG | 0.601473 | 4_4:+77919362 | Msa0705340:CDS |
| TTAGTCCCATATGAATCCCA+CGG | 0.602596 | 4_4:-77919629 | None:intergenic |
| GCAACCAAGAGTATCAATCC+AGG | 0.605706 | 4_4:+77919471 | Msa0705340:CDS |
| AAGCATAGTGACAGTACTTG+GGG | 0.608145 | 4_4:-77919409 | None:intergenic |
| CTTTGGCCAATGAAAGGTCA+AGG | 0.612836 | 4_4:-77918338 | None:intergenic |
| CATAGTGACAGTACTTGGGG+GGG | 0.625975 | 4_4:-77919406 | None:intergenic |
| GCATAGTGACAGTACTTGGG+GGG | 0.628837 | 4_4:-77919407 | None:intergenic |
| AAGTCATTTAAAATATCCAA+AGG | 0.642743 | 4_4:+77918389 | Msa0705340:CDS |
| TCATTTAAAATATCCAAAGG+TGG | 0.646731 | 4_4:+77918392 | Msa0705340:CDS |
| CTTTCAAACAGGCAGCATGA+CGG | 0.678736 | 4_4:-77918307 | None:intergenic |
| AGCATAGTGACAGTACTTGG+GGG | 0.733959 | 4_4:-77919408 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGGAAATAATAGTATTTTTT+TGG | + | chr4_4:77918504-77918523 | Msa0705340:intron | 15.0% |
| !! | TAATTTACTTTAAATGTTGA+AGG | + | chr4_4:77918616-77918635 | Msa0705340:intron | 15.0% |
| !! | ATAATTTATTATTGTCAGAA+GGG | + | chr4_4:77919211-77919230 | Msa0705340:intron | 15.0% |
| !!! | AGGAAATAATAGTATTTTTT+TGG | + | chr4_4:77918504-77918523 | Msa0705340:intron | 15.0% |
| !! | TAATTTACTTTAAATGTTGA+AGG | + | chr4_4:77918616-77918635 | Msa0705340:intron | 15.0% |
| !! | ATAATTTATTATTGTCAGAA+GGG | + | chr4_4:77919211-77919230 | Msa0705340:intron | 15.0% |
| !!! | AAAACCTATATCTTTTTCAA+GGG | + | chr4_4:77918224-77918243 | Msa0705340:five_prime_UTR | 20.0% |
| !!! | AAGTCATTTAAAATATCCAA+AGG | + | chr4_4:77918389-77918408 | Msa0705340:CDS | 20.0% |
| !! | TGTTTCGATATAATTGATAT+AGG | + | chr4_4:77918484-77918503 | Msa0705340:intron | 20.0% |
| !!! | TCAACTTTTCTTTTATTTCA+TGG | + | chr4_4:77919023-77919042 | Msa0705340:intron | 20.0% |
| !!! | TTTTATTTCATGGATCTTAT+TGG | + | chr4_4:77919033-77919052 | Msa0705340:intron | 20.0% |
| !! | GATAATTTATTATTGTCAGA+AGG | + | chr4_4:77919210-77919229 | Msa0705340:intron | 20.0% |
| !!! | AAAACCTATATCTTTTTCAA+GGG | + | chr4_4:77918224-77918243 | Msa0705340:five_prime_UTR | 20.0% |
| !!! | AAGTCATTTAAAATATCCAA+AGG | + | chr4_4:77918389-77918408 | Msa0705340:CDS | 20.0% |
| !! | TGTTTCGATATAATTGATAT+AGG | + | chr4_4:77918484-77918503 | Msa0705340:intron | 20.0% |
| !!! | TCAACTTTTCTTTTATTTCA+TGG | + | chr4_4:77919023-77919042 | Msa0705340:intron | 20.0% |
| !!! | TTTTATTTCATGGATCTTAT+TGG | + | chr4_4:77919033-77919052 | Msa0705340:intron | 20.0% |
| !! | GATAATTTATTATTGTCAGA+AGG | + | chr4_4:77919210-77919229 | Msa0705340:intron | 20.0% |
| !!! | CAAAACCTATATCTTTTTCA+AGG | + | chr4_4:77918223-77918242 | Msa0705340:five_prime_UTR | 25.0% |
| !! | TCATTTAAAATATCCAAAGG+TGG | + | chr4_4:77918392-77918411 | Msa0705340:CDS | 25.0% |
| !!! | AATAAACTTGCTGTCTTTTT+TGG | + | chr4_4:77918582-77918601 | Msa0705340:intron | 25.0% |
| ! | AATGAACATTAAATGTGATG+TGG | + | chr4_4:77918947-77918966 | Msa0705340:intron | 25.0% |
| ! | TTCTGTCTTCTAATAGATTT+CGG | + | chr4_4:77919295-77919314 | Msa0705340:intron | 25.0% |
| ! | AAAATTCAGCACAAAAAATG+TGG | - | chr4_4:77919514-77919533 | None:intergenic | 25.0% |
| !!! | TGAATTTTTTTAACTCTTGC+AGG | + | chr4_4:77919526-77919545 | Msa0705340:intron | 25.0% |
| !!! | CAAAACCTATATCTTTTTCA+AGG | + | chr4_4:77918223-77918242 | Msa0705340:five_prime_UTR | 25.0% |
| !! | TCATTTAAAATATCCAAAGG+TGG | + | chr4_4:77918392-77918411 | Msa0705340:CDS | 25.0% |
| !!! | AATAAACTTGCTGTCTTTTT+TGG | + | chr4_4:77918582-77918601 | Msa0705340:intron | 25.0% |
| ! | AATGAACATTAAATGTGATG+TGG | + | chr4_4:77918947-77918966 | Msa0705340:intron | 25.0% |
| ! | TTCTGTCTTCTAATAGATTT+CGG | + | chr4_4:77919295-77919314 | Msa0705340:intron | 25.0% |
| ! | AAAATTCAGCACAAAAAATG+TGG | - | chr4_4:77919514-77919533 | None:intergenic | 25.0% |
| !!! | TGAATTTTTTTAACTCTTGC+AGG | + | chr4_4:77919526-77919545 | Msa0705340:intron | 25.0% |
| ! | AATTTTGCCAAAAATGTAGC+AGG | + | chr4_4:77918436-77918455 | Msa0705340:CDS | 30.0% |
| AGTTTATTCAGATTGAGTAG+TGG | - | chr4_4:77918570-77918589 | None:intergenic | 30.0% | |
| !! | TTCTGCTTGTTATCGATTAT+TGG | + | chr4_4:77918811-77918830 | Msa0705340:intron | 30.0% |
| AAAAGATAGGAAATTGTAGC+AGG | - | chr4_4:77918983-77919002 | None:intergenic | 30.0% | |
| AACATGACTATTACTTTGCA+TGG | - | chr4_4:77919161-77919180 | None:intergenic | 30.0% | |
| GCAATAAATGTGAAATAACC+TGG | - | chr4_4:77919492-77919511 | None:intergenic | 30.0% | |
| !! | ATTTGAATGTTCTAGAGACA+TGG | - | chr4_4:77919657-77919676 | None:intergenic | 30.0% |
| ! | AATTTTGCCAAAAATGTAGC+AGG | + | chr4_4:77918436-77918455 | Msa0705340:CDS | 30.0% |
| AGTTTATTCAGATTGAGTAG+TGG | - | chr4_4:77918570-77918589 | None:intergenic | 30.0% | |
| !! | TTCTGCTTGTTATCGATTAT+TGG | + | chr4_4:77918811-77918830 | Msa0705340:intron | 30.0% |
| AAAAGATAGGAAATTGTAGC+AGG | - | chr4_4:77918983-77919002 | None:intergenic | 30.0% | |
| AACATGACTATTACTTTGCA+TGG | - | chr4_4:77919161-77919180 | None:intergenic | 30.0% | |
| GCAATAAATGTGAAATAACC+TGG | - | chr4_4:77919492-77919511 | None:intergenic | 30.0% | |
| !! | ATTTGAATGTTCTAGAGACA+TGG | - | chr4_4:77919657-77919676 | None:intergenic | 30.0% |
| GGATCCCTTGAAAAAGATAT+AGG | - | chr4_4:77918231-77918250 | None:intergenic | 35.0% | |
| ATCCTGTGTCATCTAAGTAT+TGG | + | chr4_4:77918247-77918266 | Msa0705340:five_prime_UTR | 35.0% | |
| TTCCAATACTTAGATGACAC+AGG | - | chr4_4:77918252-77918271 | None:intergenic | 35.0% | |
| AGGTCACATAACTTTCAAAC+AGG | - | chr4_4:77918321-77918340 | None:intergenic | 35.0% | |
| GATAATCTTTGGCCAATGAA+AGG | - | chr4_4:77918347-77918366 | None:intergenic | 35.0% | |
| ACGTATGCGATGATAATCTT+TGG | - | chr4_4:77918358-77918377 | None:intergenic | 35.0% | |
| ! | AGCTTTACCTGCTACATTTT+TGG | - | chr4_4:77918446-77918465 | None:intergenic | 35.0% |
| !!! | AACTTGCTGTCTTTTTTGGA+TGG | + | chr4_4:77918586-77918605 | Msa0705340:intron | 35.0% |
| AATGTTCATTGTAACCTGCA+AGG | - | chr4_4:77918937-77918956 | None:intergenic | 35.0% | |
| ATACAAGGGGTTCAAAAGAT+AGG | - | chr4_4:77918996-77919015 | None:intergenic | 35.0% | |
| AAGTTGAGCAGAACATACAA+GGG | - | chr4_4:77919010-77919029 | None:intergenic | 35.0% | |
| AAAGTTGAGCAGAACATACA+AGG | - | chr4_4:77919011-77919030 | None:intergenic | 35.0% | |
| TTAACTGTCACACGTTTCAA+TGG | + | chr4_4:77919060-77919079 | Msa0705340:intron | 35.0% | |
| GCAGACTTTGAATTAGCAAA+TGG | - | chr4_4:77919349-77919368 | None:intergenic | 35.0% | |
| AAAGCATAGTGACAGTACTT+GGG | - | chr4_4:77919413-77919432 | None:intergenic | 35.0% | |
| ATAACCTGGATTGATACTCT+TGG | - | chr4_4:77919478-77919497 | None:intergenic | 35.0% | |
| GGATCCCTTGAAAAAGATAT+AGG | - | chr4_4:77918231-77918250 | None:intergenic | 35.0% | |
| ATCCTGTGTCATCTAAGTAT+TGG | + | chr4_4:77918247-77918266 | Msa0705340:five_prime_UTR | 35.0% | |
| TTCCAATACTTAGATGACAC+AGG | - | chr4_4:77918252-77918271 | None:intergenic | 35.0% | |
| AGGTCACATAACTTTCAAAC+AGG | - | chr4_4:77918321-77918340 | None:intergenic | 35.0% | |
| GATAATCTTTGGCCAATGAA+AGG | - | chr4_4:77918347-77918366 | None:intergenic | 35.0% | |
| ACGTATGCGATGATAATCTT+TGG | - | chr4_4:77918358-77918377 | None:intergenic | 35.0% | |
| ! | AGCTTTACCTGCTACATTTT+TGG | - | chr4_4:77918446-77918465 | None:intergenic | 35.0% |
| !!! | AACTTGCTGTCTTTTTTGGA+TGG | + | chr4_4:77918586-77918605 | Msa0705340:intron | 35.0% |
| AATGTTCATTGTAACCTGCA+AGG | - | chr4_4:77918937-77918956 | None:intergenic | 35.0% | |
| ATACAAGGGGTTCAAAAGAT+AGG | - | chr4_4:77918996-77919015 | None:intergenic | 35.0% | |
| AAGTTGAGCAGAACATACAA+GGG | - | chr4_4:77919010-77919029 | None:intergenic | 35.0% | |
| AAAGTTGAGCAGAACATACA+AGG | - | chr4_4:77919011-77919030 | None:intergenic | 35.0% | |
| TTAACTGTCACACGTTTCAA+TGG | + | chr4_4:77919060-77919079 | Msa0705340:intron | 35.0% | |
| GCAGACTTTGAATTAGCAAA+TGG | - | chr4_4:77919349-77919368 | None:intergenic | 35.0% | |
| AAAGCATAGTGACAGTACTT+GGG | - | chr4_4:77919413-77919432 | None:intergenic | 35.0% | |
| ATAACCTGGATTGATACTCT+TGG | - | chr4_4:77919478-77919497 | None:intergenic | 35.0% | |
| GGAAAGAAATGTACGTCCAA+TGG | + | chr4_4:77918268-77918287 | Msa0705340:exon | 40.0% | |
| ACGTCATATGTTCTGACCAT+TGG | - | chr4_4:77918287-77918306 | None:intergenic | 40.0% | |
| ATGTGACCTTGACCTTTCAT+TGG | + | chr4_4:77918332-77918351 | Msa0705340:CDS | 40.0% | |
| TATCCAAAGGTGGTTATAGC+TGG | + | chr4_4:77918402-77918421 | Msa0705340:CDS | 40.0% | |
| CATCGAACTCAAACAGATCA+TGG | - | chr4_4:77918644-77918663 | None:intergenic | 40.0% | |
| CAGCTTCAGGATGATGTTTA+CGG | - | chr4_4:77918716-77918735 | None:intergenic | 40.0% | |
| TGACTTGATTGAACAGCTTC+AGG | - | chr4_4:77918729-77918748 | None:intergenic | 40.0% | |
| TAAGACCATTAAGCGTGATG+TGG | + | chr4_4:77918867-77918886 | Msa0705340:intron | 40.0% | |
| AGTTGAGCAGAACATACAAG+GGG | - | chr4_4:77919009-77919028 | None:intergenic | 40.0% | |
| CACACGTTTCAATGGTAAAG+AGG | + | chr4_4:77919068-77919087 | Msa0705340:intron | 40.0% | |
| !! | CGTTTTCAAGAGTTCTAGCT+GGG | + | chr4_4:77919121-77919140 | Msa0705340:intron | 40.0% |
| ATAGATTTCGGTTCTGCAGA+TGG | + | chr4_4:77919307-77919326 | Msa0705340:intron | 40.0% | |
| AGTCTGCTACAAATTTAGCC+TGG | + | chr4_4:77919362-77919381 | Msa0705340:CDS | 40.0% | |
| AAGCATAGTGACAGTACTTG+GGG | - | chr4_4:77919412-77919431 | None:intergenic | 40.0% | |
| ! | GAAAGCATAGTGACAGTACT+TGG | - | chr4_4:77919414-77919433 | None:intergenic | 40.0% |
| CAAGGACTTTGGGTGTAAAA+TGG | - | chr4_4:77919452-77919471 | None:intergenic | 40.0% | |
| GATTGATACTCTTGGTTGCA+AGG | - | chr4_4:77919470-77919489 | None:intergenic | 40.0% | |
| ACTTCTGTCAATCAATCCGT+GGG | + | chr4_4:77919613-77919632 | Msa0705340:CDS | 40.0% | |
| ATCAATCCGTGGGATTCATA+TGG | + | chr4_4:77919623-77919642 | Msa0705340:CDS | 40.0% | |
| TCAATCCGTGGGATTCATAT+GGG | + | chr4_4:77919624-77919643 | Msa0705340:CDS | 40.0% | |
| TTAGTCCCATATGAATCCCA+CGG | - | chr4_4:77919632-77919651 | None:intergenic | 40.0% | |
| CTGACTCATTGCATGAGTTA+AGG | - | chr4_4:77919702-77919721 | None:intergenic | 40.0% | |
| GGAAAGAAATGTACGTCCAA+TGG | + | chr4_4:77918268-77918287 | Msa0705340:exon | 40.0% | |
| ACGTCATATGTTCTGACCAT+TGG | - | chr4_4:77918287-77918306 | None:intergenic | 40.0% | |
| ATGTGACCTTGACCTTTCAT+TGG | + | chr4_4:77918332-77918351 | Msa0705340:CDS | 40.0% | |
| TATCCAAAGGTGGTTATAGC+TGG | + | chr4_4:77918402-77918421 | Msa0705340:CDS | 40.0% | |
| CATCGAACTCAAACAGATCA+TGG | - | chr4_4:77918644-77918663 | None:intergenic | 40.0% | |
| CAGCTTCAGGATGATGTTTA+CGG | - | chr4_4:77918716-77918735 | None:intergenic | 40.0% | |
| TGACTTGATTGAACAGCTTC+AGG | - | chr4_4:77918729-77918748 | None:intergenic | 40.0% | |
| TAAGACCATTAAGCGTGATG+TGG | + | chr4_4:77918867-77918886 | Msa0705340:intron | 40.0% | |
| AGTTGAGCAGAACATACAAG+GGG | - | chr4_4:77919009-77919028 | None:intergenic | 40.0% | |
| CACACGTTTCAATGGTAAAG+AGG | + | chr4_4:77919068-77919087 | Msa0705340:intron | 40.0% | |
| !! | CGTTTTCAAGAGTTCTAGCT+GGG | + | chr4_4:77919121-77919140 | Msa0705340:intron | 40.0% |
| ATAGATTTCGGTTCTGCAGA+TGG | + | chr4_4:77919307-77919326 | Msa0705340:intron | 40.0% | |
| AGTCTGCTACAAATTTAGCC+TGG | + | chr4_4:77919362-77919381 | Msa0705340:CDS | 40.0% | |
| AAGCATAGTGACAGTACTTG+GGG | - | chr4_4:77919412-77919431 | None:intergenic | 40.0% | |
| ! | GAAAGCATAGTGACAGTACT+TGG | - | chr4_4:77919414-77919433 | None:intergenic | 40.0% |
| CAAGGACTTTGGGTGTAAAA+TGG | - | chr4_4:77919452-77919471 | None:intergenic | 40.0% | |
| GATTGATACTCTTGGTTGCA+AGG | - | chr4_4:77919470-77919489 | None:intergenic | 40.0% | |
| ACTTCTGTCAATCAATCCGT+GGG | + | chr4_4:77919613-77919632 | Msa0705340:CDS | 40.0% | |
| ATCAATCCGTGGGATTCATA+TGG | + | chr4_4:77919623-77919642 | Msa0705340:CDS | 40.0% | |
| TCAATCCGTGGGATTCATAT+GGG | + | chr4_4:77919624-77919643 | Msa0705340:CDS | 40.0% | |
| TTAGTCCCATATGAATCCCA+CGG | - | chr4_4:77919632-77919651 | None:intergenic | 40.0% | |
| CTGACTCATTGCATGAGTTA+AGG | - | chr4_4:77919702-77919721 | None:intergenic | 40.0% | |
| CTTTCAAACAGGCAGCATGA+CGG | - | chr4_4:77918310-77918329 | None:intergenic | 45.0% | |
| CTTTGGCCAATGAAAGGTCA+AGG | - | chr4_4:77918341-77918360 | None:intergenic | 45.0% | |
| ACACCAGCTATAACCACCTT+TGG | - | chr4_4:77918408-77918427 | None:intergenic | 45.0% | |
| AAAGGTGGTTATAGCTGGTG+TGG | + | chr4_4:77918407-77918426 | Msa0705340:CDS | 45.0% | |
| GCTTTGTCTTCTTCATGCTG+TGG | + | chr4_4:77918753-77918772 | Msa0705340:CDS | 45.0% | |
| TTCAGCCACATCACGCTTAA+TGG | - | chr4_4:77918875-77918894 | None:intergenic | 45.0% | |
| CACATTTCTTTGCTCCTTGC+AGG | + | chr4_4:77918920-77918939 | Msa0705340:intron | 45.0% | |
| !! | GCGTTTTCAAGAGTTCTAGC+TGG | + | chr4_4:77919120-77919139 | Msa0705340:intron | 45.0% |
| AGCATAGTGACAGTACTTGG+GGG | - | chr4_4:77919411-77919430 | None:intergenic | 45.0% | |
| CTCTTGGTTGCAAGGACTTT+GGG | - | chr4_4:77919462-77919481 | None:intergenic | 45.0% | |
| ACTCTTGGTTGCAAGGACTT+TGG | - | chr4_4:77919463-77919482 | None:intergenic | 45.0% | |
| !! | GCAACCAAGAGTATCAATCC+AGG | + | chr4_4:77919471-77919490 | Msa0705340:CDS | 45.0% |
| CACTTCTGTCAATCAATCCG+TGG | + | chr4_4:77919612-77919631 | Msa0705340:CDS | 45.0% | |
| AGTTAAGGCTTGAACAGCAC+TGG | - | chr4_4:77919687-77919706 | None:intergenic | 45.0% | |
| CGCATTTCTCTTGCTTCATC+AGG | + | chr4_4:77919722-77919741 | Msa0705340:CDS | 45.0% | |
| CTTTCAAACAGGCAGCATGA+CGG | - | chr4_4:77918310-77918329 | None:intergenic | 45.0% | |
| CTTTGGCCAATGAAAGGTCA+AGG | - | chr4_4:77918341-77918360 | None:intergenic | 45.0% | |
| ACACCAGCTATAACCACCTT+TGG | - | chr4_4:77918408-77918427 | None:intergenic | 45.0% | |
| AAAGGTGGTTATAGCTGGTG+TGG | + | chr4_4:77918407-77918426 | Msa0705340:CDS | 45.0% | |
| GCTTTGTCTTCTTCATGCTG+TGG | + | chr4_4:77918753-77918772 | Msa0705340:CDS | 45.0% | |
| TTCAGCCACATCACGCTTAA+TGG | - | chr4_4:77918875-77918894 | None:intergenic | 45.0% | |
| CACATTTCTTTGCTCCTTGC+AGG | + | chr4_4:77918920-77918939 | Msa0705340:intron | 45.0% | |
| !! | GCGTTTTCAAGAGTTCTAGC+TGG | + | chr4_4:77919120-77919139 | Msa0705340:intron | 45.0% |
| AGCATAGTGACAGTACTTGG+GGG | - | chr4_4:77919411-77919430 | None:intergenic | 45.0% | |
| CTCTTGGTTGCAAGGACTTT+GGG | - | chr4_4:77919462-77919481 | None:intergenic | 45.0% | |
| ACTCTTGGTTGCAAGGACTT+TGG | - | chr4_4:77919463-77919482 | None:intergenic | 45.0% | |
| !! | GCAACCAAGAGTATCAATCC+AGG | + | chr4_4:77919471-77919490 | Msa0705340:CDS | 45.0% |
| CACTTCTGTCAATCAATCCG+TGG | + | chr4_4:77919612-77919631 | Msa0705340:CDS | 45.0% | |
| AGTTAAGGCTTGAACAGCAC+TGG | - | chr4_4:77919687-77919706 | None:intergenic | 45.0% | |
| ! | GCTGTTGTGCATGTTTTGCC+AGG | - | chr4_4:77919383-77919402 | None:intergenic | 50.0% |
| CATAGTGACAGTACTTGGGG+GGG | - | chr4_4:77919409-77919428 | None:intergenic | 50.0% | |
| GCATAGTGACAGTACTTGGG+GGG | - | chr4_4:77919410-77919429 | None:intergenic | 50.0% | |
| ! | GCTGTTGTGCATGTTTTGCC+AGG | - | chr4_4:77919383-77919402 | None:intergenic | 50.0% |
| CATAGTGACAGTACTTGGGG+GGG | - | chr4_4:77919409-77919428 | None:intergenic | 50.0% | |
| GCATAGTGACAGTACTTGGG+GGG | - | chr4_4:77919410-77919429 | None:intergenic | 50.0% | |
| !! | AGGCTTGAACAGCACTGGCT+GGG | - | chr4_4:77919682-77919701 | None:intergenic | 55.0% |
| !! | AAGGCTTGAACAGCACTGGC+TGG | - | chr4_4:77919683-77919702 | None:intergenic | 55.0% |
| !! | AGGCTTGAACAGCACTGGCT+GGG | - | chr4_4:77919682-77919701 | None:intergenic | 55.0% |
| !! | AAGGCTTGAACAGCACTGGC+TGG | - | chr4_4:77919683-77919702 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 77918214 | 77919742 | 77918214 | ID=Msa0705340;Name=Msa0705340 |
| chr4_4 | mRNA | 77918214 | 77919742 | 77918214 | ID=Msa0705340-mRNA-1;Parent=Msa0705340;Name=Msa0705340-mRNA-1;_AED=0.11;_eAED=0.28;_QI=62|0|0|1|0|0|5|0|227 |
| chr4_4 | exon | 77918214 | 77918320 | 77918214 | ID=Msa0705340-mRNA-1:exon:24844;Parent=Msa0705340-mRNA-1 |
| chr4_4 | exon | 77918330 | 77918457 | 77918330 | ID=Msa0705340-mRNA-1:exon:24845;Parent=Msa0705340-mRNA-1 |
| chr4_4 | exon | 77918638 | 77918774 | 77918638 | ID=Msa0705340-mRNA-1:exon:24846;Parent=Msa0705340-mRNA-1 |
| chr4_4 | exon | 77919311 | 77919492 | 77919311 | ID=Msa0705340-mRNA-1:exon:24847;Parent=Msa0705340-mRNA-1 |
| chr4_4 | exon | 77919554 | 77919742 | 77919554 | ID=Msa0705340-mRNA-1:exon:24848;Parent=Msa0705340-mRNA-1 |
| chr4_4 | five_prime_UTR | 77918214 | 77918275 | 77918214 | ID=Msa0705340-mRNA-1:five_prime_utr;Parent=Msa0705340-mRNA-1 |
| chr4_4 | CDS | 77918276 | 77918320 | 77918276 | ID=Msa0705340-mRNA-1:cds;Parent=Msa0705340-mRNA-1 |
| chr4_4 | CDS | 77918330 | 77918457 | 77918330 | ID=Msa0705340-mRNA-1:cds;Parent=Msa0705340-mRNA-1 |
| chr4_4 | CDS | 77918638 | 77918774 | 77918638 | ID=Msa0705340-mRNA-1:cds;Parent=Msa0705340-mRNA-1 |
| chr4_4 | CDS | 77919311 | 77919492 | 77919311 | ID=Msa0705340-mRNA-1:cds;Parent=Msa0705340-mRNA-1 |
| chr4_4 | CDS | 77919554 | 77919742 | 77919554 | ID=Msa0705340-mRNA-1:cds;Parent=Msa0705340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
