Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705900 | RHN43137.1 | 92.308 | 91 | 7 | 0 | 32 | 122 | 10 | 100 | 1.03e-54 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705900 | sp|Q8W103|CHR24_ARATH | 64.615 | 65 | 19 | 1 | 56 | 116 | 348 | 412 | 1.47e-19 | 86.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705900 | A0A396GWZ1 | 92.308 | 91 | 7 | 0 | 32 | 122 | 10 | 100 | 4.91e-55 | 176 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0705900 | TR | SNF2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705900 | MtrunA17_Chr8g0384541 | 92.308 | 91 | 7 | 0 | 32 | 122 | 10 | 100 | 9.45e-59 | 176 |
| Msa0705900 | MtrunA17_Chr8g0384531 | 69.318 | 88 | 19 | 2 | 37 | 116 | 332 | 419 | 2.47e-32 | 119 |
| Msa0705900 | MtrunA17_Chr1g0183681 | 34.043 | 141 | 62 | 8 | 5 | 116 | 288 | 426 | 4.46e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705900 | AT5G63950.1 | 64.615 | 65 | 19 | 1 | 56 | 116 | 348 | 412 | 1.50e-20 | 86.3 |
| Msa0705900 | AT5G63950.2 | 64.615 | 65 | 19 | 1 | 56 | 116 | 348 | 412 | 1.59e-20 | 86.3 |
| Msa0705900 | AT2G18760.4 | 52.727 | 55 | 20 | 1 | 68 | 116 | 366 | 420 | 9.56e-13 | 63.9 |
| Msa0705900 | AT2G18760.1 | 52.727 | 55 | 20 | 1 | 68 | 116 | 366 | 420 | 9.56e-13 | 63.9 |
| Msa0705900 | AT2G18760.2 | 52.727 | 55 | 20 | 1 | 68 | 116 | 366 | 420 | 9.56e-13 | 63.9 |
| Msa0705900 | AT2G18760.7 | 52.727 | 55 | 20 | 1 | 68 | 116 | 366 | 420 | 9.56e-13 | 63.9 |
| Msa0705900 | AT2G18760.5 | 52.727 | 55 | 20 | 1 | 68 | 116 | 366 | 420 | 9.56e-13 | 63.9 |
| Msa0705900 | AT2G18760.6 | 52.727 | 55 | 20 | 1 | 68 | 116 | 366 | 420 | 9.56e-13 | 63.9 |
| Msa0705900 | AT2G18760.3 | 52.727 | 55 | 20 | 1 | 68 | 116 | 425 | 479 | 9.87e-13 | 63.9 |
Find 31 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATCCTTCCCTCTGATA+TGG | 0.321992 | 4_4:+78745506 | None:intergenic |
| GCTCTGGTCATTACATTGTC+AGG | 0.381421 | 4_4:-78745480 | Msa0705900:CDS |
| CTCGCAGATGACATGGGATT+GGG | 0.428089 | 4_4:-78745443 | Msa0705900:CDS |
| ACACCATTGTTAAAGCTTGA+TGG | 0.429098 | 4_4:-78748111 | Msa0705900:CDS |
| CCTCGCAGATGACATGGGAT+TGG | 0.456122 | 4_4:-78745444 | Msa0705900:CDS |
| TGAGTATGAATCAAATGATT+CGG | 0.462163 | 4_4:-78745621 | Msa0705900:CDS |
| GGGAAGGATTGAAGTGGCTC+TGG | 0.490862 | 4_4:-78745496 | Msa0705900:CDS |
| CACAAAGTCCACGTATAAGT+TGG | 0.495204 | 4_4:-78745555 | Msa0705900:CDS |
| TGAATCAAATGATTCGGATC+TGG | 0.499129 | 4_4:-78745615 | Msa0705900:CDS |
| TGGAATCCTCGCAGATGACA+TGG | 0.518517 | 4_4:-78745450 | Msa0705900:CDS |
| AGCTTTAACAATGGTGTCAA+GGG | 0.529781 | 4_4:+78748117 | None:intergenic |
| AAATGATTCGGATCTGGTGT+TGG | 0.534372 | 4_4:-78745609 | Msa0705900:CDS |
| TCATTACATTGTCAGGGTAA+AGG | 0.534572 | 4_4:-78745473 | Msa0705900:CDS |
| AAGCTTTAACAATGGTGTCA+AGG | 0.566797 | 4_4:+78748116 | None:intergenic |
| AAATGTTGATTCCATATCAG+AGG | 0.584917 | 4_4:-78745517 | Msa0705900:CDS |
| TTGATTCCATATCAGAGGGA+AGG | 0.586105 | 4_4:-78745512 | Msa0705900:CDS |
| CCACCATCAAGCTTTAACAA+TGG | 0.588189 | 4_4:+78748108 | None:intergenic |
| AAAGTCCACGTATAAGTTGG+AGG | 0.590302 | 4_4:-78745552 | Msa0705900:CDS |
| GGAATACGCCCTATTGCAGT+AGG | 0.599430 | 4_4:-78748087 | Msa0705900:intron |
| CTCTGGTCATTACATTGTCA+GGG | 0.600790 | 4_4:-78745479 | Msa0705900:CDS |
| TTACATTGTCAGGGTAAAGG+TGG | 0.606790 | 4_4:-78745470 | Msa0705900:CDS |
| AGACGAAGGTGAAGGTGCAA+TGG | 0.606860 | 4_4:-78745687 | Msa0705900:CDS |
| AATGTTGATTCCATATCAGA+GGG | 0.609093 | 4_4:-78745516 | Msa0705900:CDS |
| TGAAATGAAGACGAAGGTGA+AGG | 0.621551 | 4_4:-78745695 | Msa0705900:intron |
| GACGAGCAGTATCGACGGTA+CGG | 0.622052 | 4_4:+78745662 | None:intergenic |
| CCATTGTTAAAGCTTGATGG+TGG | 0.635032 | 4_4:-78748108 | Msa0705900:CDS |
| AAGTCCACGTATAAGTTGGA+GGG | 0.637438 | 4_4:-78745551 | Msa0705900:CDS |
| GGAATCCTCGCAGATGACAT+GGG | 0.648291 | 4_4:-78745449 | Msa0705900:CDS |
| ATCAGAGGGAAGGATTGAAG+TGG | 0.660849 | 4_4:-78745502 | Msa0705900:CDS |
| CTCTTGACGAGCAGTATCGA+CGG | 0.674626 | 4_4:+78745657 | None:intergenic |
| CCAATCCCATGTCATCTGCG+AGG | 0.678179 | 4_4:+78745444 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATAGAAATAAATGT+GGG | + | chr4_4:78745816-78745835 | None:intergenic | 10.0% |
| !! | AAAAATATAATTTATCCATT+AGG | - | chr4_4:78745881-78745900 | Msa0705900:intron | 10.0% |
| !!! | TTGTTTTTTAATGTAAATAA+AGG | + | chr4_4:78746355-78746374 | None:intergenic | 10.0% |
| !! | AATAGATAAATAAAATATGA+CGG | - | chr4_4:78747478-78747497 | Msa0705900:intron | 10.0% |
| !! | GAAAAAAATAGAAATAAATG+TGG | + | chr4_4:78745817-78745836 | None:intergenic | 15.0% |
| !!! | TTTTTAATGTAAATAAAGGT+TGG | + | chr4_4:78746351-78746370 | None:intergenic | 15.0% |
| !!! | AATTTTTTTTGAAAGATTCA+GGG | + | chr4_4:78746744-78746763 | None:intergenic | 15.0% |
| !!! | TAATTTTTTTTGAAAGATTC+AGG | + | chr4_4:78746745-78746764 | None:intergenic | 15.0% |
| !! | CATGATTTATAAAGAAAAGT+AGG | - | chr4_4:78745691-78745710 | Msa0705900:intron | 20.0% |
| !! | AAAAAATCCAAAGCAATAAA+GGG | - | chr4_4:78745721-78745740 | Msa0705900:intron | 20.0% |
| !! | GTTTAGTAACTTTAACAATT+AGG | + | chr4_4:78746838-78746857 | None:intergenic | 20.0% |
| !! | CTAAATCAGTAATCTATAAT+CGG | - | chr4_4:78747399-78747418 | Msa0705900:intron | 20.0% |
| !!! | TAATCGGTTTAGTTTAATTA+AGG | - | chr4_4:78747415-78747434 | Msa0705900:intron | 20.0% |
| !!! | AATCGGTTTAGTTTAATTAA+GGG | - | chr4_4:78747416-78747435 | Msa0705900:intron | 20.0% |
| !! | ATAAATAAAATATGACGGTA+CGG | - | chr4_4:78747483-78747502 | Msa0705900:intron | 20.0% |
| !! | ATTGTTCAAGAAATGATTAA+TGG | + | chr4_4:78747810-78747829 | None:intergenic | 20.0% |
| !!! | TCAATTTTTGTTGGTAACAA+TGG | + | chr4_4:78745633-78745652 | None:intergenic | 25.0% |
| ! | CAAAAAATCCAAAGCAATAA+AGG | - | chr4_4:78745720-78745739 | Msa0705900:intron | 25.0% |
| !!! | TCTTTTTTCTCTCTTTTCAT+TGG | - | chr4_4:78746034-78746053 | Msa0705900:intron | 25.0% |
| ! | ATCAAAAAATTGTCACAAAG+TGG | - | chr4_4:78746127-78746146 | Msa0705900:intron | 25.0% |
| ! | GAAATAAAAAACTGGGAAAT+GGG | + | chr4_4:78746563-78746582 | None:intergenic | 25.0% |
| ! | AGAAATAAAAAACTGGGAAA+TGG | + | chr4_4:78746564-78746583 | None:intergenic | 25.0% |
| ! | AAGCAGAGAAATAAAAAACT+GGG | + | chr4_4:78746570-78746589 | None:intergenic | 25.0% |
| ! | AAAGCAGAGAAATAAAAAAC+TGG | + | chr4_4:78746571-78746590 | None:intergenic | 25.0% |
| ! | AATTGTAGATTTGAATCTAC+TGG | - | chr4_4:78746651-78746670 | Msa0705900:intron | 25.0% |
| !!! | CTTTTCAGATTTGAAAGTAT+TGG | - | chr4_4:78746772-78746791 | Msa0705900:intron | 25.0% |
| !!! | TCATGTTCATGGTTTTTTTA+TGG | - | chr4_4:78746796-78746815 | Msa0705900:intron | 25.0% |
| !!! | ATTAAAAGTGTTGATCAGTT+CGG | - | chr4_4:78746873-78746892 | Msa0705900:intron | 25.0% |
| !! | GTTAATGGGTATTTAGAAAT+GGG | - | chr4_4:78746984-78747003 | Msa0705900:intron | 25.0% |
| ! | AACGTTAAAATGAGACTAAA+AGG | + | chr4_4:78747340-78747359 | None:intergenic | 25.0% |
| !! | ATCGGTTTAGTTTAATTAAG+GGG | - | chr4_4:78747417-78747436 | Msa0705900:intron | 25.0% |
| ! | TACAAATTTAGCAAACAAAG+CGG | - | chr4_4:78747527-78747546 | Msa0705900:intron | 25.0% |
| ! | TAGGTATAATAAGAACTAGA+AGG | - | chr4_4:78747575-78747594 | Msa0705900:intron | 25.0% |
| ! | TAATACAAATGATGAGAGTA+AGG | + | chr4_4:78747774-78747793 | None:intergenic | 25.0% |
| !! | TCTTGAACAATAACTTTTAG+AGG | - | chr4_4:78747819-78747838 | Msa0705900:intron | 25.0% |
| ! | TGAGTATGAATCAAATGATT+CGG | - | chr4_4:78747917-78747936 | Msa0705900:intron | 25.0% |
| TAATAGTACCTACTGCAATA+GGG | + | chr4_4:78745462-78745481 | None:intergenic | 30.0% | |
| !!! | ATTTTTGTTGGTAACAATGG+CGG | + | chr4_4:78745630-78745649 | None:intergenic | 30.0% |
| ! | GTAGAAGACTCAATTTTTGT+TGG | + | chr4_4:78745642-78745661 | None:intergenic | 30.0% |
| TTAGTTTCCCTTTATTGCTT+TGG | + | chr4_4:78745731-78745750 | None:intergenic | 30.0% | |
| CTATTTGTTTGACAACCTAA+TGG | + | chr4_4:78745899-78745918 | None:intergenic | 30.0% | |
| !! | ATGATGGTATTGGTAATAGA+AGG | + | chr4_4:78746172-78746191 | None:intergenic | 30.0% |
| !! | GATTTGAATCTACTGGTTTA+TGG | - | chr4_4:78746658-78746677 | Msa0705900:intron | 30.0% |
| !! | AAAGTATTGGTTCATGTTCA+TGG | - | chr4_4:78746785-78746804 | Msa0705900:intron | 30.0% |
| !!! | CATGGTTTTTTTATGGTGTT+TGG | - | chr4_4:78746803-78746822 | Msa0705900:intron | 30.0% |
| TACTAAACGAAAATGTCATG+AGG | - | chr4_4:78746850-78746869 | Msa0705900:intron | 30.0% | |
| ! | GGTTAATGGGTATTTAGAAA+TGG | - | chr4_4:78746983-78747002 | Msa0705900:intron | 30.0% |
| TTGAAATGAAATGCAATGCT+TGG | + | chr4_4:78747199-78747218 | None:intergenic | 30.0% | |
| ATTGCATTTCATTTCAACGT+GGG | - | chr4_4:78747202-78747221 | Msa0705900:intron | 30.0% | |
| ! | TGAGTTAGAAAAAGGTATGA+TGG | + | chr4_4:78747228-78747247 | None:intergenic | 30.0% |
| ACAAATTTAGCAAACAAAGC+GGG | - | chr4_4:78747528-78747547 | Msa0705900:intron | 30.0% | |
| ! | ATGGATTAAGAAGAAGTGAT+AGG | - | chr4_4:78747556-78747575 | Msa0705900:intron | 30.0% |
| AACTAGAAGGCAAAGTTTAA+GGG | - | chr4_4:78747588-78747607 | Msa0705900:intron | 30.0% | |
| ! | TGTTGTTTACCAAACAGAAA+CGG | + | chr4_4:78747661-78747680 | None:intergenic | 30.0% |
| !! | AAATGTTGATTCCATATCAG+AGG | - | chr4_4:78748021-78748040 | Msa0705900:intron | 30.0% |
| !! | AATGTTGATTCCATATCAGA+GGG | - | chr4_4:78748022-78748041 | Msa0705900:intron | 30.0% |
| ! | AGCTTTAACAATGGTGTCAA+GGG | + | chr4_4:78745424-78745443 | None:intergenic | 35.0% |
| ! | AAGCTTTAACAATGGTGTCA+AGG | + | chr4_4:78745425-78745444 | None:intergenic | 35.0% |
| ACACCATTGTTAAAGCTTGA+TGG | - | chr4_4:78745427-78745446 | Msa0705900:CDS | 35.0% | |
| CTAATAGTACCTACTGCAAT+AGG | + | chr4_4:78745463-78745482 | None:intergenic | 35.0% | |
| CTATTGCAGTAGGTACTATT+AGG | - | chr4_4:78745461-78745480 | Msa0705900:CDS | 35.0% | |
| GTGGGTATAAGATAGAAAGT+TGG | + | chr4_4:78745798-78745817 | None:intergenic | 35.0% | |
| ACCAAAAAGTTACTGAATCC+GGG | + | chr4_4:78746256-78746275 | None:intergenic | 35.0% | |
| CACCAAAAAGTTACTGAATC+CGG | + | chr4_4:78746257-78746276 | None:intergenic | 35.0% | |
| !! | GGATTCAGTAACTTTTTGGT+GGG | - | chr4_4:78746256-78746275 | Msa0705900:intron | 35.0% |
| AGATTTATTGAAGGGGTGAT+GGG | + | chr4_4:78746429-78746448 | None:intergenic | 35.0% | |
| AAGGTGGAGATTTATTGAAG+GGG | + | chr4_4:78746436-78746455 | None:intergenic | 35.0% | |
| GAAGGTGGAGATTTATTGAA+GGG | + | chr4_4:78746437-78746456 | None:intergenic | 35.0% | |
| TGAAGGTGGAGATTTATTGA+AGG | + | chr4_4:78746438-78746457 | None:intergenic | 35.0% | |
| TTCAATAAATCTCCACCTTC+AGG | - | chr4_4:78746437-78746456 | Msa0705900:intron | 35.0% | |
| AATTGCTGCAACAAAAATCC+AGG | + | chr4_4:78746599-78746618 | None:intergenic | 35.0% | |
| TGCAGCAATTTAGATCAAGA+AGG | - | chr4_4:78746609-78746628 | Msa0705900:intron | 35.0% | |
| AGCAATTTAGATCAAGAAGG+AGG | - | chr4_4:78746612-78746631 | Msa0705900:intron | 35.0% | |
| TGAAATGCAATGCTTGGAAA+AGG | + | chr4_4:78747193-78747212 | None:intergenic | 35.0% | |
| CATTGCATTTCATTTCAACG+TGG | - | chr4_4:78747201-78747220 | Msa0705900:intron | 35.0% | |
| AAACGAAACCCATTAAGACA+AGG | - | chr4_4:78747314-78747333 | Msa0705900:intron | 35.0% | |
| ! | CTAAAAGGCCTTGTCTTAAT+GGG | + | chr4_4:78747325-78747344 | None:intergenic | 35.0% |
| ! | ACTAAAAGGCCTTGTCTTAA+TGG | + | chr4_4:78747326-78747345 | None:intergenic | 35.0% |
| ! | TCTCTTGTTTCCAATTTCGA+GGG | - | chr4_4:78747369-78747388 | Msa0705900:intron | 35.0% |
| TATGACGGTACGGATTTAAA+TGG | - | chr4_4:78747493-78747512 | Msa0705900:intron | 35.0% | |
| GAACTAGAAGGCAAAGTTTA+AGG | - | chr4_4:78747587-78747606 | Msa0705900:intron | 35.0% | |
| TTGAAAATCCCGTTTCTGTT+TGG | - | chr4_4:78747649-78747668 | Msa0705900:intron | 35.0% | |
| GTTGTTTACCAAACAGAAAC+GGG | + | chr4_4:78747660-78747679 | None:intergenic | 35.0% | |
| TAGTACCATGTGAGAAATGT+TGG | + | chr4_4:78747723-78747742 | None:intergenic | 35.0% | |
| ! | TGAATCAAATGATTCGGATC+TGG | - | chr4_4:78747923-78747942 | Msa0705900:intron | 35.0% |
| TCATTACATTGTCAGGGTAA+AGG | - | chr4_4:78748065-78748084 | Msa0705900:intron | 35.0% | |
| AAAAACAATGCAGGTACGTA+AGG | - | chr4_4:78748118-78748137 | Msa0705900:CDS | 35.0% | |
| ! | CCACCATCAAGCTTTAACAA+TGG | + | chr4_4:78745433-78745452 | None:intergenic | 40.0% |
| CCATTGTTAAAGCTTGATGG+TGG | - | chr4_4:78745430-78745449 | Msa0705900:CDS | 40.0% | |
| !! | TGGTAACAATGGCGGATAAA+TGG | + | chr4_4:78745622-78745641 | None:intergenic | 40.0% |
| AGATGGAGTCATGATGGTAT+TGG | + | chr4_4:78746182-78746201 | None:intergenic | 40.0% | |
| CATCATGACTCCATCTCATT+GGG | - | chr4_4:78746186-78746205 | Msa0705900:intron | 40.0% | |
| AGCTGCAGACATTGTCAAAT+TGG | - | chr4_4:78746228-78746247 | Msa0705900:intron | 40.0% | |
| GCTGCAGACATTGTCAAATT+GGG | - | chr4_4:78746229-78746248 | Msa0705900:intron | 40.0% | |
| ! | ACCCGGATTCAGTAACTTTT+TGG | - | chr4_4:78746252-78746271 | Msa0705900:intron | 40.0% |
| ! | CGGATTCAGTAACTTTTTGG+TGG | - | chr4_4:78746255-78746274 | Msa0705900:intron | 40.0% |
| CTTTGCTCAATATCCACCAT+TGG | - | chr4_4:78746292-78746311 | Msa0705900:intron | 40.0% | |
| CCAAAGGATTAAACCAATGG+TGG | + | chr4_4:78746308-78746327 | None:intergenic | 40.0% | |
| !! | CCACCATTGGTTTAATCCTT+TGG | - | chr4_4:78746305-78746324 | Msa0705900:intron | 40.0% |
| GAGCCAAAGGATTAAACCAA+TGG | + | chr4_4:78746311-78746330 | None:intergenic | 40.0% | |
| TGTGTCAAAATGTGAGCCAA+AGG | + | chr4_4:78746324-78746343 | None:intergenic | 40.0% | |
| GAGATTTATTGAAGGGGTGA+TGG | + | chr4_4:78746430-78746449 | None:intergenic | 40.0% | |
| !! | ATTTCTCTGCTTTTGTTGCC+TGG | - | chr4_4:78746578-78746597 | Msa0705900:intron | 40.0% |
| CAAGAAGGAGGTTTCAGATT+AGG | - | chr4_4:78746624-78746643 | Msa0705900:intron | 40.0% | |
| TGAATACGGTGTTCGTTGAA+GGG | - | chr4_4:78746931-78746950 | Msa0705900:intron | 40.0% | |
| CATTAACCCGAACATCAACA+GGG | + | chr4_4:78746971-78746990 | None:intergenic | 40.0% | |
| ! | CTGTTGATGTTCGGGTTAAT+GGG | - | chr4_4:78746970-78746989 | Msa0705900:intron | 40.0% |
| TGGACCATGAGATTAATCCA+AGG | - | chr4_4:78747065-78747084 | Msa0705900:intron | 40.0% | |
| GGACCATGAGATTAATCCAA+GGG | - | chr4_4:78747066-78747085 | Msa0705900:intron | 40.0% | |
| GATTAATCCAAGGGTGGAAA+TGG | - | chr4_4:78747075-78747094 | Msa0705900:intron | 40.0% | |
| ATCCGGATTGCATGACTTTA+GGG | + | chr4_4:78747126-78747145 | None:intergenic | 40.0% | |
| TCGACAAGACACCAATTTGA+CGG | + | chr4_4:78747149-78747168 | None:intergenic | 40.0% | |
| GTCACAGGTGAGTTAGAAAA+AGG | + | chr4_4:78747236-78747255 | None:intergenic | 40.0% | |
| CTAGGAAAGAAGATTGGACA+GGG | + | chr4_4:78747258-78747277 | None:intergenic | 40.0% | |
| TCTAGGAAAGAAGATTGGAC+AGG | + | chr4_4:78747259-78747278 | None:intergenic | 40.0% | |
| AGCTGTCTAGGAAAGAAGAT+TGG | + | chr4_4:78747264-78747283 | None:intergenic | 40.0% | |
| ! | CTCTCTTGTTTCCAATTTCG+AGG | - | chr4_4:78747368-78747387 | Msa0705900:intron | 40.0% |
| TAGATCTCTTCCCTCGAAAT+TGG | + | chr4_4:78747382-78747401 | None:intergenic | 40.0% | |
| ATTTAGCAAACAAAGCGGGA+AGG | - | chr4_4:78747532-78747551 | Msa0705900:intron | 40.0% | |
| TTCCTCCAACATTTCTCACA+TGG | - | chr4_4:78747715-78747734 | Msa0705900:intron | 40.0% | |
| TACCATGTGAGAAATGTTGG+AGG | + | chr4_4:78747720-78747739 | None:intergenic | 40.0% | |
| TGAGAGTAAGGAAAGAGAAG+AGG | + | chr4_4:78747762-78747781 | None:intergenic | 40.0% | |
| AGAGGATGAAATGAAGACGA+AGG | - | chr4_4:78747837-78747856 | Msa0705900:intron | 40.0% | |
| TGAAATGAAGACGAAGGTGA+AGG | - | chr4_4:78747843-78747862 | Msa0705900:intron | 40.0% | |
| ! | AAATGATTCGGATCTGGTGT+TGG | - | chr4_4:78747929-78747948 | Msa0705900:intron | 40.0% |
| CACAAAGTCCACGTATAAGT+TGG | - | chr4_4:78747983-78748002 | Msa0705900:intron | 40.0% | |
| ! | AAAGTCCACGTATAAGTTGG+AGG | - | chr4_4:78747986-78748005 | Msa0705900:intron | 40.0% |
| ! | AAGTCCACGTATAAGTTGGA+GGG | - | chr4_4:78747987-78748006 | Msa0705900:intron | 40.0% |
| ! | TTTTCCCTCCAACTTATACG+TGG | + | chr4_4:78747994-78748013 | None:intergenic | 40.0% |
| TTGATTCCATATCAGAGGGA+AGG | - | chr4_4:78748026-78748045 | Msa0705900:intron | 40.0% | |
| TTCAATCCTTCCCTCTGATA+TGG | + | chr4_4:78748035-78748054 | None:intergenic | 40.0% | |
| CTCTGGTCATTACATTGTCA+GGG | - | chr4_4:78748059-78748078 | Msa0705900:intron | 40.0% | |
| TTACATTGTCAGGGTAAAGG+TGG | - | chr4_4:78748068-78748087 | Msa0705900:intron | 40.0% | |
| CCAATGAGATGGAGTCATGA+TGG | + | chr4_4:78746188-78746207 | None:intergenic | 45.0% | |
| CCATCATGACTCCATCTCAT+TGG | - | chr4_4:78746185-78746204 | Msa0705900:intron | 45.0% | |
| GACATTGTCAAATTGGGACC+CGG | - | chr4_4:78746235-78746254 | Msa0705900:intron | 45.0% | |
| !! | ATTGAAGGGGTGATGGGTAT+GGG | + | chr4_4:78746423-78746442 | None:intergenic | 45.0% |
| !! | TATTGAAGGGGTGATGGGTA+TGG | + | chr4_4:78746424-78746443 | None:intergenic | 45.0% |
| ATGAGCAATTCGACGGTAAG+AGG | + | chr4_4:78746492-78746511 | None:intergenic | 45.0% | |
| !! | CTACTGGTTTATGGCTTCGA+TGG | - | chr4_4:78746667-78746686 | Msa0705900:intron | 45.0% |
| TTTATGGCTTCGATGGAGCT+TGG | - | chr4_4:78746674-78746693 | Msa0705900:intron | 45.0% | |
| CTGAATACGGTGTTCGTTGA+AGG | - | chr4_4:78746930-78746949 | Msa0705900:intron | 45.0% | |
| GAATACGGTGTTCGTTGAAG+GGG | - | chr4_4:78746932-78746951 | Msa0705900:intron | 45.0% | |
| AATACGGTGTTCGTTGAAGG+GGG | - | chr4_4:78746933-78746952 | Msa0705900:intron | 45.0% | |
| GTTGTGACCCTGTTGATGTT+CGG | - | chr4_4:78746961-78746980 | Msa0705900:intron | 45.0% | |
| TTGTGACCCTGTTGATGTTC+GGG | - | chr4_4:78746962-78746981 | Msa0705900:intron | 45.0% | |
| CCATTAACCCGAACATCAAC+AGG | + | chr4_4:78746972-78746991 | None:intergenic | 45.0% | |
| ! | CCTGTTGATGTTCGGGTTAA+TGG | - | chr4_4:78746969-78746988 | Msa0705900:intron | 45.0% |
| CTGAGACACATGTCAAACTC+TGG | - | chr4_4:78747045-78747064 | Msa0705900:intron | 45.0% | |
| CCACCCTTGGATTAATCTCA+TGG | + | chr4_4:78747072-78747091 | None:intergenic | 45.0% | |
| CCATGAGATTAATCCAAGGG+TGG | - | chr4_4:78747069-78747088 | Msa0705900:intron | 45.0% | |
| TAATCCAAGGGTGGAAATGG+AGG | - | chr4_4:78747078-78747097 | Msa0705900:intron | 45.0% | |
| GATCCGGATTGCATGACTTT+AGG | + | chr4_4:78747127-78747146 | None:intergenic | 45.0% | |
| ! | AGACACCAATTTGACGGATC+CGG | + | chr4_4:78747143-78747162 | None:intergenic | 45.0% |
| ! | GTCAAATTGGTGTCTTGTCG+AGG | - | chr4_4:78747148-78747167 | Msa0705900:intron | 45.0% |
| TCCTAGACAGCTGCTTGATT+TGG | - | chr4_4:78747272-78747291 | Msa0705900:intron | 45.0% | |
| ACCAAATCAAGCAGCTGTCT+AGG | + | chr4_4:78747276-78747295 | None:intergenic | 45.0% | |
| ATCAGAGGGAAGGATTGAAG+TGG | - | chr4_4:78748036-78748055 | Msa0705900:intron | 45.0% | |
| GCTCTGGTCATTACATTGTC+AGG | - | chr4_4:78748058-78748077 | Msa0705900:intron | 45.0% | |
| GGGATTGGGAAAAACAATGC+AGG | - | chr4_4:78748109-78748128 | Msa0705900:CDS | 45.0% | |
| GGAATACGCCCTATTGCAGT+AGG | - | chr4_4:78745451-78745470 | Msa0705900:CDS | 50.0% | |
| ATTGGGACTGTGCCTGAGTT+TGG | - | chr4_4:78746203-78746222 | Msa0705900:intron | 50.0% | |
| TTGGGACTGTGCCTGAGTTT+GGG | - | chr4_4:78746204-78746223 | Msa0705900:intron | 50.0% | |
| GCAATTCGACGGTAAGAGGA+CGG | + | chr4_4:78746488-78746507 | None:intergenic | 50.0% | |
| CGACGCTATGAGCAATTCGA+CGG | + | chr4_4:78746499-78746518 | None:intergenic | 50.0% | |
| ACAAGTAACAGGTCCAGAGG+AGG | + | chr4_4:78746526-78746545 | None:intergenic | 50.0% | |
| ACGACAAGTAACAGGTCCAG+AGG | + | chr4_4:78746529-78746548 | None:intergenic | 50.0% | |
| GTGTTCGTTGAAGGGGGAAT+GGG | - | chr4_4:78746939-78746958 | Msa0705900:intron | 50.0% | |
| TTTGCCTCCATTTCCACCCT+TGG | + | chr4_4:78747085-78747104 | None:intergenic | 50.0% | |
| !! | GGATTGCATGACTTTAGGGC+GGG | + | chr4_4:78747122-78747141 | None:intergenic | 50.0% |
| ! | CGGATTGCATGACTTTAGGG+CGG | + | chr4_4:78747123-78747142 | None:intergenic | 50.0% |
| CGCCCTAAAGTCATGCAATC+CGG | - | chr4_4:78747121-78747140 | Msa0705900:intron | 50.0% | |
| GCAATCCGGATCCGTCAAAT+TGG | - | chr4_4:78747135-78747154 | Msa0705900:intron | 50.0% | |
| AGAAGATTGGACAGGGTCAC+AGG | + | chr4_4:78747251-78747270 | None:intergenic | 50.0% | |
| GCAAACAAAGCGGGAAGGTA+TGG | - | chr4_4:78747537-78747556 | Msa0705900:intron | 50.0% | |
| ! | AGACGAAGGTGAAGGTGCAA+TGG | - | chr4_4:78747851-78747870 | Msa0705900:intron | 50.0% |
| ! | CTCTTGACGAGCAGTATCGA+CGG | + | chr4_4:78747884-78747903 | None:intergenic | 50.0% |
| TGGAATCCTCGCAGATGACA+TGG | - | chr4_4:78748088-78748107 | Msa0705900:CDS | 50.0% | |
| GGAATCCTCGCAGATGACAT+GGG | - | chr4_4:78748089-78748108 | Msa0705900:CDS | 50.0% | |
| CTCGCAGATGACATGGGATT+GGG | - | chr4_4:78748095-78748114 | Msa0705900:CDS | 50.0% | |
| CAGGCACAGTCCCAATGAGA+TGG | + | chr4_4:78746199-78746218 | None:intergenic | 55.0% | |
| GTCTGCAGCTACCCAAACTC+AGG | + | chr4_4:78746218-78746237 | None:intergenic | 55.0% | |
| !! | CGTGAAATGGGTACTGGGTC+TGG | + | chr4_4:78746397-78746416 | None:intergenic | 55.0% |
| GGCTGCGTGAAATGGGTACT+GGG | + | chr4_4:78746402-78746421 | None:intergenic | 55.0% | |
| ! | GGGTATGGGCTGCGTGAAAT+GGG | + | chr4_4:78746409-78746428 | None:intergenic | 55.0% |
| ! | TGGGTATGGGCTGCGTGAAA+TGG | + | chr4_4:78746410-78746429 | None:intergenic | 55.0% |
| ATAGCGTCGTCTTCCTCCTC+TGG | - | chr4_4:78746510-78746529 | Msa0705900:intron | 55.0% | |
| GCGACGGTACGACAAGTAAC+AGG | + | chr4_4:78746537-78746556 | None:intergenic | 55.0% | |
| ACTGGGAAATGGGTCAGCGA+CGG | + | chr4_4:78746553-78746572 | None:intergenic | 55.0% | |
| TTGATCAGTTCGGCGACGAG+AGG | - | chr4_4:78746883-78746902 | Msa0705900:intron | 55.0% | |
| TGATCAGTTCGGCGACGAGA+GGG | - | chr4_4:78746884-78746903 | Msa0705900:intron | 55.0% | |
| AGTCGACGGCGAGCTGAATA+CGG | - | chr4_4:78746917-78746936 | Msa0705900:intron | 55.0% | |
| GGTGTTCGTTGAAGGGGGAA+TGG | - | chr4_4:78746938-78746957 | Msa0705900:intron | 55.0% | |
| !! | GACGAGCAGTATCGACGGTA+CGG | + | chr4_4:78747879-78747898 | None:intergenic | 55.0% |
| GGGAAGGATTGAAGTGGCTC+TGG | - | chr4_4:78748042-78748061 | Msa0705900:intron | 55.0% | |
| CCAATCCCATGTCATCTGCG+AGG | + | chr4_4:78748097-78748116 | None:intergenic | 55.0% | |
| CCTCGCAGATGACATGGGAT+TGG | - | chr4_4:78748094-78748113 | Msa0705900:CDS | 55.0% | |
| GGGCTGCGTGAAATGGGTAC+TGG | + | chr4_4:78746403-78746422 | None:intergenic | 60.0% | |
| GGTAAGAGGACGGCAGTCGA+CGG | + | chr4_4:78746478-78746497 | None:intergenic | 60.0% | |
| GATCAGTTCGGCGACGAGAG+GGG | - | chr4_4:78746885-78746904 | Msa0705900:intron | 60.0% | |
| ! | ATTCAGCTCGCCGTCGACTG+CGG | + | chr4_4:78746916-78746935 | None:intergenic | 60.0% |
| GCAGTCGACGGTGAGAGGGA+CGG | + | chr4_4:78746466-78746485 | None:intergenic | 65.0% | |
| GACGGCAGTCGACGGTGAGA+GGG | + | chr4_4:78746470-78746489 | None:intergenic | 65.0% | |
| AGGGGTGGAACCGCAGTCGA+CGG | - | chr4_4:78746903-78746922 | Msa0705900:intron | 65.0% | |
| TGAGAGGGACGGCGGCCTGA+AGG | + | chr4_4:78746455-78746474 | None:intergenic | 70.0% | |
| GTCGACGGTGAGAGGGACGG+CGG | + | chr4_4:78746463-78746482 | None:intergenic | 70.0% | |
| GGACGGCAGTCGACGGTGAG+AGG | + | chr4_4:78746471-78746490 | None:intergenic | 70.0% | |
| CAGTTCGGCGACGAGAGGGG+TGG | - | chr4_4:78746888-78746907 | Msa0705900:intron | 70.0% | |
| GAGGGACGGCGGCCTGAAGG+TGG | + | chr4_4:78746452-78746471 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 78745406 | 78748154 | 78745406 | ID=Msa0705900;Name=Msa0705900 |
| chr4_4 | mRNA | 78745406 | 78748154 | 78745406 | ID=Msa0705900-mRNA-1;Parent=Msa0705900;Name=Msa0705900-mRNA-1;_AED=0.58;_eAED=0.62;_QI=0|0|0|0.5|1|1|2|0|122 |
| chr4_4 | exon | 78748088 | 78748154 | 78748088 | ID=Msa0705900-mRNA-1:exon:25222;Parent=Msa0705900-mRNA-1 |
| chr4_4 | exon | 78745406 | 78745707 | 78745406 | ID=Msa0705900-mRNA-1:exon:25221;Parent=Msa0705900-mRNA-1 |
| chr4_4 | CDS | 78748088 | 78748154 | 78748088 | ID=Msa0705900-mRNA-1:cds;Parent=Msa0705900-mRNA-1 |
| chr4_4 | CDS | 78745406 | 78745707 | 78745406 | ID=Msa0705900-mRNA-1:cds;Parent=Msa0705900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
