AlfalfaGEDB | Msa0706650

M. sativa cultivar zhongmu-4 / Msa0706650

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0010033 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0046983 GO:0050789 GO:0050793 GO:0050896 GO:0065007 GO:0097159 GO:1901363
PFAM: PF06217.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706650	XP_003630555.2	99.444	180	1	0	1	180	1	180	1.83e-126	368

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706650	sp\|Q8S8C6\|BPC4_ARATH	60.684	117	43	2	1	116	1	115	1.62e-38	136

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706650	G7LI34	99.444	180	1	0	1	180	1	180	8.73e-127	368

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TFs/TRs:

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Gene ID	Type	Classification
Msa0706650	TF	BBR-BPC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706650	MtrunA17_Chr8g0385961	99.444	180	1	0	1	180	1	180	1.68e-130	368
Msa0706650	MtrunA17_Chr1g0156031	44.920	187	83	9	3	179	2	178	3.93e-32	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706650	AT2G21240.1	60.684	117	43	2	1	116	1	115	1.65e-39	136
Msa0706650	AT2G21240.2	60.684	117	43	2	1	116	1	115	1.65e-39	136
Msa0706650	AT4G38910.2	42.442	172	79	4	1	172	1	152	7.42e-33	119
Msa0706650	AT4G38910.1	42.553	141	63	3	33	172	4	127	1.87e-22	90.9
Msa0706650	AT5G42520.1	37.297	185	85	5	1	169	1	170	4.27e-19	83.2
Msa0706650	AT5G42520.2	37.838	185	80	5	1	169	1	166	4.37e-19	83.2

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Find 46 sgRNAs with CRISPR-Local

Find 59 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACCGCCAATATGAAAACGGT+AGG	0.665966	4_4:+79661933	Msa0706650:CDS
ACTGGCAACTTTCCATTCAA+TGG	0.459914	4_4:+79662339	Msa0706650:CDS
AGAAGCAGCATATAGCACGA+CGG	0.752304	4_4:+79662422	Msa0706650:CDS
AGAAGTTATAACAGTAACTG+GGG	0.682187	4_4:-79662466	None:intergenic
AGACGTAGCCCTTCGGCAGA+GGG	0.565616	4_4:+79662239	Msa0706650:CDS
AGTACTATTCCGACTTTGAA+GGG	0.520694	4_4:-79662319	None:intergenic
AGTTATAACAGTAACTGGGG+AGG	0.670600	4_4:-79662463	None:intergenic
ATATGCTGCTTCTGTCATGT+TGG	0.532878	4_4:-79662412	None:intergenic
ATCTGAAAAGAATGAAGCCC+TGG	0.461756	4_4:+79662209	Msa0706650:CDS
CAGAAGTTATAACAGTAACT+GGG	0.557616	4_4:-79662467	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGGATATATGGTTTGAAGAA+TGG	-	chr4_4:79662395-79662414	None:intergenic	30.0%
AGAAGTTATAACAGTAACTG+GGG	-	chr4_4:79662469-79662488	None:intergenic	30.0%
CAGAAGTTATAACAGTAACT+GGG	-	chr4_4:79662470-79662489	None:intergenic	30.0%
TCAGAAGTTATAACAGTAAC+TGG	-	chr4_4:79662471-79662490	None:intergenic	30.0%
TCATCTAACTAAGAGAACAA+AGG	+	chr4_4:79662503-79662522	Msa0706650:CDS	30.0%
TATGTGCATTCTACTTACCA+GGG	-	chr4_4:79661990-79662009	None:intergenic	35.0%
ATATGTGCATTCTACTTACC+AGG	-	chr4_4:79661991-79662010	None:intergenic	35.0%
TTTAAATGTGCAGTGGAATG+TGG	+	chr4_4:79662074-79662093	Msa0706650:intron	35.0%
TCTTCTTGAACTTGAACTAG+AGG	+	chr4_4:79662179-79662198	Msa0706650:CDS	35.0%
AGTACTATTCCGACTTTGAA+GGG	-	chr4_4:79662322-79662341	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	79661923	79662560	79661923	ID=Msa0706650;Name=Msa0706650
chr4_4	mRNA	79661923	79662560	79661923	ID=Msa0706650-mRNA-1;Parent=Msa0706650;Name=Msa0706650-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|0\|0\|1\|1\|1\|2\|0\|180
chr4_4	exon	79661923	79661991	79661923	ID=Msa0706650-mRNA-1:exon:25670;Parent=Msa0706650-mRNA-1
chr4_4	exon	79662087	79662560	79662087	ID=Msa0706650-mRNA-1:exon:25671;Parent=Msa0706650-mRNA-1
chr4_4	CDS	79661923	79661991	79661923	ID=Msa0706650-mRNA-1:cds;Parent=Msa0706650-mRNA-1
chr4_4	CDS	79662087	79662560	79662087	ID=Msa0706650-mRNA-1:cds;Parent=Msa0706650-mRNA-1

Gene Sequence

>Msa0706650

ATGGACGATGACCGCCAATATGAAAACGGTAGGCATAAGATGGACTACTACAGAGGAGCACATTCCCTGTGGAATGTGGATCCCCAGCATCAAATAAAGGAACAAAATGCCCTAGTTATGAATAAAAAAATTAGGTCCATTATGGCTGAAAGGCAGGCAGCTCTTCTTGAACTTGAACTAGAGGCTGCTATATCTGAAAAGAATGAAGCCCTGGCTGCTCGAGACGTAGCCCTTCGGCAGAGGGATGAAGCACTTGCTCAGAGGGATAATGCTCTACTGGAACGGGACAATGCTCTTGCAGCCCTTCAAAGTCGGAATAGTACTGGCAACTTTCCATTCAATGGTGGAATTCAACGTGGATCCAAGCGGATGCACCATTCTTCAAACCATATATCCAACATGACAGAAGCAGCATATAGCACGACGGATATAATAATAAGAGATGCCTCCCCAGTTACTGTTATAACTTCTGAAGATGTCAAATCTCATCTAACTAAGAGAACAAAGGAGAACAAAGCATCACAGACACCTACCAAAATATGA

Protein sequence

>Msa0706650

MDDDRQYENGRHKMDYYRGAHSLWNVDPQHQIKEQNALVMNKKIRSIMAERQAALLELELEAAISEKNEALAARDVALRQRDEALAQRDNALLERDNALAALQSRNSTGNFPFNGGIQRGSKRMHHSSNHISNMTEAAYSTTDIIIRDASPVTVITSEDVKSHLTKRTKENKASQTPTKI*