Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708710 | KEH18910.1 | 99.024 | 205 | 2 | 0 | 1 | 205 | 1 | 205 | 1.33e-148 | 421 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708710 | sp|Q500W4|PLI2C_ARATH | 69.697 | 198 | 56 | 2 | 2 | 195 | 3 | 200 | 1.05e-102 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708710 | A0A072TZG0 | 99.024 | 205 | 2 | 0 | 1 | 205 | 1 | 205 | 6.34e-149 | 421 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0708710 | TF | LIM |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708710 | MtrunA17_Chr8g0349391 | 99.024 | 205 | 2 | 0 | 1 | 205 | 1 | 205 | 1.22e-152 | 421 |
| Msa0708710 | MtrunA17_Chr7g0247111 | 77.295 | 207 | 45 | 2 | 1 | 205 | 1 | 207 | 4.32e-112 | 318 |
| Msa0708710 | MtrunA17_Chr3g0113051 | 61.497 | 187 | 66 | 2 | 1 | 181 | 1 | 187 | 3.31e-83 | 245 |
| Msa0708710 | MtrunA17_Chr8g0386501 | 54.680 | 203 | 86 | 3 | 1 | 202 | 1 | 198 | 4.83e-75 | 225 |
| Msa0708710 | MtrunA17_Chr1g0152431 | 48.718 | 195 | 93 | 3 | 1 | 189 | 1 | 194 | 9.45e-63 | 193 |
| Msa0708710 | MtrunA17_Chr4g0059371 | 48.045 | 179 | 80 | 2 | 2 | 171 | 3 | 177 | 6.27e-57 | 178 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708710 | AT3G61230.1 | 69.697 | 198 | 56 | 2 | 2 | 195 | 3 | 200 | 1.06e-103 | 298 |
| Msa0708710 | AT1G01780.1 | 67.500 | 200 | 65 | 0 | 1 | 200 | 1 | 200 | 1.87e-101 | 292 |
| Msa0708710 | AT2G45800.1 | 70.098 | 204 | 55 | 4 | 1 | 198 | 1 | 204 | 1.20e-100 | 291 |
| Msa0708710 | AT3G55770.3 | 67.232 | 177 | 54 | 2 | 1 | 173 | 1 | 177 | 1.76e-88 | 259 |
| Msa0708710 | AT3G55770.5 | 67.232 | 177 | 54 | 2 | 1 | 173 | 1 | 177 | 1.76e-88 | 259 |
| Msa0708710 | AT3G55770.2 | 67.232 | 177 | 54 | 2 | 1 | 173 | 1 | 177 | 1.76e-88 | 259 |
| Msa0708710 | AT3G55770.1 | 67.232 | 177 | 54 | 2 | 1 | 173 | 1 | 177 | 1.76e-88 | 259 |
| Msa0708710 | AT2G39900.1 | 66.292 | 178 | 55 | 2 | 1 | 173 | 1 | 178 | 2.46e-87 | 256 |
| Msa0708710 | AT3G55770.7 | 56.398 | 211 | 54 | 3 | 1 | 173 | 1 | 211 | 1.66e-80 | 240 |
| Msa0708710 | AT3G55770.7 | 42.857 | 98 | 54 | 1 | 97 | 194 | 3 | 98 | 2.50e-19 | 83.2 |
| Msa0708710 | AT3G55770.7 | 35.088 | 114 | 40 | 1 | 3 | 82 | 101 | 214 | 2.34e-14 | 69.7 |
| Msa0708710 | AT2G45800.2 | 65.116 | 172 | 51 | 6 | 34 | 198 | 4 | 173 | 1.40e-70 | 213 |
| Msa0708710 | AT2G45800.2 | 52.113 | 71 | 34 | 0 | 3 | 73 | 68 | 138 | 6.49e-21 | 86.3 |
| Msa0708710 | AT1G10200.1 | 50.286 | 175 | 81 | 2 | 1 | 169 | 1 | 175 | 9.84e-61 | 188 |
| Msa0708710 | AT3G55770.4 | 65.414 | 133 | 41 | 3 | 1 | 129 | 1 | 132 | 2.93e-56 | 175 |
| Msa0708710 | AT3G55770.4 | 42.857 | 98 | 54 | 1 | 97 | 194 | 3 | 98 | 1.45e-20 | 84.0 |
| Msa0708710 | AT3G55770.6 | 66.142 | 127 | 37 | 3 | 1 | 121 | 1 | 127 | 1.19e-53 | 168 |
| Msa0708710 | AT3G55770.6 | 42.857 | 98 | 54 | 1 | 97 | 194 | 3 | 98 | 8.83e-21 | 84.3 |
| Msa0708710 | AT1G10200.2 | 45.385 | 130 | 65 | 2 | 46 | 169 | 4 | 133 | 2.32e-37 | 127 |
| Msa0708710 | AT1G10200.2 | 48.611 | 72 | 37 | 0 | 3 | 74 | 61 | 132 | 2.30e-17 | 75.9 |
Find 35 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTCAAGAGGTTTCTTC+TGG | 0.235129 | 4_4:-82339211 | None:intergenic |
| GTTTCTTCTGGATGATCTTC+AGG | 0.252303 | 4_4:-82339199 | None:intergenic |
| TCAAGCTATGCTGCTCTTGA+TGG | 0.353414 | 4_4:+82339031 | Msa0708710:CDS |
| CAAAATGAACCCTGCAGTAT+AGG | 0.377575 | 4_4:-82339057 | None:intergenic |
| AGCAAGTCGCACATTTGTCC+AGG | 0.436853 | 4_4:-82338622 | None:intergenic |
| TGCTTTAGGTGTGCTCATGC+AGG | 0.437095 | 4_4:+82338992 | Msa0708710:CDS |
| TTGATGGTGTCCTATACTGC+AGG | 0.448405 | 4_4:+82339047 | Msa0708710:CDS |
| TCTACCACAAGACATGCTTT+AGG | 0.453453 | 4_4:+82338978 | Msa0708710:CDS |
| CTCTAAAACCGTCTATCCCC+TGG | 0.477045 | 4_4:+82338643 | Msa0708710:CDS |
| AACCGTCTATCCCCTGGAAA+AGG | 0.490548 | 4_4:+82338649 | Msa0708710:CDS |
| GAAGAAAACATGTCTTTCAC+TGG | 0.519623 | 4_4:+82337569 | None:intergenic |
| TTGTTACTGTTTCATTCAAG+AGG | 0.524503 | 4_4:-82339221 | None:intergenic |
| TTCCATGTTCAGTGGTACCC+TGG | 0.525905 | 4_4:+82338604 | Msa0708710:CDS |
| TCATTGCAAGGGAAATCTTA+CGG | 0.534756 | 4_4:+82337691 | Msa0708710:CDS |
| AACATGGAAGATAGTCTACT+TGG | 0.545011 | 4_4:-82338590 | None:intergenic |
| GGTGCTTCTGCTGATTGTGA+AGG | 0.545791 | 4_4:-82339178 | None:intergenic |
| ATTAAACAGGTGACACTGGA+AGG | 0.549370 | 4_4:+82338950 | Msa0708710:intron |
| CTTCAAATGTAGTCATTGCA+AGG | 0.555260 | 4_4:+82337679 | Msa0708710:CDS |
| GCAATAGAGAATTCCATCCA+TGG | 0.558350 | 4_4:-82338015 | None:intergenic |
| AGTACATACTCCTCCATGGA+TGG | 0.562913 | 4_4:+82338002 | Msa0708710:CDS |
| TTCTGACAAAGCAAATGAGC+TGG | 0.565336 | 4_4:+82338231 | Msa0708710:CDS |
| TACTCAAATCTGCACACAAG+AGG | 0.573033 | 4_4:+82339116 | Msa0708710:CDS |
| GCTTTAGGTGTGCTCATGCA+GGG | 0.590942 | 4_4:+82338993 | Msa0708710:CDS |
| TTCAAATGTAGTCATTGCAA+GGG | 0.595286 | 4_4:+82337680 | Msa0708710:CDS |
| TGATGGTGTCCTATACTGCA+GGG | 0.598936 | 4_4:+82339048 | Msa0708710:CDS |
| GATGAGTACATACTCCTCCA+TGG | 0.608526 | 4_4:+82337998 | Msa0708710:intron |
| GTCCAGGGTACCACTGAACA+TGG | 0.612761 | 4_4:-82338606 | None:intergenic |
| GCATAGCTTGAATGTGTGAG+AGG | 0.618734 | 4_4:-82339019 | None:intergenic |
| AAATCTGCACACAAGAGGAA+TGG | 0.618865 | 4_4:+82339121 | Msa0708710:CDS |
| TGGAACTCTTGATAAATGCA+AGG | 0.629692 | 4_4:+82337589 | Msa0708710:CDS |
| CATAGCTTGAATGTGTGAGA+GGG | 0.638300 | 4_4:-82339018 | None:intergenic |
| AGACTATCTTCCATGTTCAG+TGG | 0.654978 | 4_4:+82338596 | Msa0708710:CDS |
| GCAAGTCGCACATTTGTCCA+GGG | 0.661497 | 4_4:-82338621 | None:intergenic |
| CACACCTAAAGCATGTCTTG+TGG | 0.697099 | 4_4:-82338982 | None:intergenic |
| ATAGAGAATTCCATCCATGG+AGG | 0.764020 | 4_4:-82338012 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATAATTTTTTGTTCATTT+TGG | + | chr4_4:82338175-82338194 | Msa0708710:intron | 10.0% |
| !! | TAAAATAAAAATTCAAGTAA+TGG | - | chr4_4:82338300-82338319 | None:intergenic | 10.0% |
| !! | AATTTATCTCTAATAATTTA+TGG | - | chr4_4:82338400-82338419 | None:intergenic | 10.0% |
| !!! | AATTGTTTCTTTTAAAAATT+TGG | + | chr4_4:82338736-82338755 | Msa0708710:intron | 10.0% |
| !!! | ATATAATTTTTTGTTCATTT+TGG | + | chr4_4:82338175-82338194 | Msa0708710:intron | 10.0% |
| !! | TAAAATAAAAATTCAAGTAA+TGG | - | chr4_4:82338300-82338319 | None:intergenic | 10.0% |
| !! | AATTTATCTCTAATAATTTA+TGG | - | chr4_4:82338400-82338419 | None:intergenic | 10.0% |
| !!! | AATTGTTTCTTTTAAAAATT+TGG | + | chr4_4:82338736-82338755 | Msa0708710:intron | 10.0% |
| !!! | TTAAAGCTTCAATTTATTTT+TGG | + | chr4_4:82337919-82337938 | Msa0708710:intron | 15.0% |
| !! | AAAATAAAAAATGAAGGATT+TGG | - | chr4_4:82338102-82338121 | None:intergenic | 15.0% |
| !! | AAAATTATATGTGTATCAAT+TGG | - | chr4_4:82338165-82338184 | None:intergenic | 15.0% |
| !!! | TTTTTTTGGTTTTATTAAAC+AGG | + | chr4_4:82338937-82338956 | Msa0708710:intron | 15.0% |
| !!! | TTAAAGCTTCAATTTATTTT+TGG | + | chr4_4:82337919-82337938 | Msa0708710:intron | 15.0% |
| !! | AAAATAAAAAATGAAGGATT+TGG | - | chr4_4:82338102-82338121 | None:intergenic | 15.0% |
| !! | AAAATTATATGTGTATCAAT+TGG | - | chr4_4:82338165-82338184 | None:intergenic | 15.0% |
| !!! | TTTTTTTGGTTTTATTAAAC+AGG | + | chr4_4:82338937-82338956 | Msa0708710:intron | 15.0% |
| !!! | TACAGCTTGTTTTAAAATTT+AGG | - | chr4_4:82337895-82337914 | None:intergenic | 20.0% |
| !! | TAAAAGATAAAGATCAGATA+TGG | - | chr4_4:82338263-82338282 | None:intergenic | 20.0% |
| !!! | AGACAAATTTCATATCTTTT+TGG | - | chr4_4:82338368-82338387 | None:intergenic | 20.0% |
| !!! | GCTTTTTTAAATCAAATTCT+TGG | - | chr4_4:82338789-82338808 | None:intergenic | 20.0% |
| !! | AATATGGAATTCATAAATGA+AGG | + | chr4_4:82338875-82338894 | Msa0708710:intron | 20.0% |
| !!! | TACAGCTTGTTTTAAAATTT+AGG | - | chr4_4:82337895-82337914 | None:intergenic | 20.0% |
| !! | TAAAAGATAAAGATCAGATA+TGG | - | chr4_4:82338263-82338282 | None:intergenic | 20.0% |
| !!! | AGACAAATTTCATATCTTTT+TGG | - | chr4_4:82338368-82338387 | None:intergenic | 20.0% |
| !!! | GCTTTTTTAAATCAAATTCT+TGG | - | chr4_4:82338789-82338808 | None:intergenic | 20.0% |
| !! | AATATGGAATTCATAAATGA+AGG | + | chr4_4:82338875-82338894 | Msa0708710:intron | 20.0% |
| !!! | ATGCTTATTTGAAGCATTTT+AGG | + | chr4_4:82337827-82337846 | Msa0708710:intron | 25.0% |
| ! | CCAATATTCAATAATGTCAT+TGG | - | chr4_4:82337974-82337993 | None:intergenic | 25.0% |
| ! | CCAATGACATTATTGAATAT+TGG | + | chr4_4:82337971-82337990 | Msa0708710:intron | 25.0% |
| ! | AAAAAGTTGAATTAGCCATA+TGG | + | chr4_4:82338332-82338351 | Msa0708710:intron | 25.0% |
| ! | AATTAGCCATATGGAAATTA+GGG | + | chr4_4:82338341-82338360 | Msa0708710:intron | 25.0% |
| !!! | GTATTGATCTTTTACAGAAT+AGG | + | chr4_4:82338564-82338583 | Msa0708710:intron | 25.0% |
| !! | AACAATTTTCCACAAAATCA+AGG | - | chr4_4:82338723-82338742 | None:intergenic | 25.0% |
| ! | TTACCTGATTTCATATAACT+TGG | + | chr4_4:82338762-82338781 | Msa0708710:intron | 25.0% |
| ! | TTTAAACACAAGCTGTAATA+TGG | + | chr4_4:82338859-82338878 | Msa0708710:intron | 25.0% |
| !! | AAAAAATGTGTTACGACTTT+TGG | - | chr4_4:82338923-82338942 | None:intergenic | 25.0% |
| !!! | AAAGTCGTAACACATTTTTT+TGG | + | chr4_4:82338923-82338942 | Msa0708710:intron | 25.0% |
| !!! | ATGCTTATTTGAAGCATTTT+AGG | + | chr4_4:82337827-82337846 | Msa0708710:intron | 25.0% |
| ! | CCAATATTCAATAATGTCAT+TGG | - | chr4_4:82337974-82337993 | None:intergenic | 25.0% |
| ! | CCAATGACATTATTGAATAT+TGG | + | chr4_4:82337971-82337990 | Msa0708710:intron | 25.0% |
| ! | AAAAAGTTGAATTAGCCATA+TGG | + | chr4_4:82338332-82338351 | Msa0708710:intron | 25.0% |
| ! | AATTAGCCATATGGAAATTA+GGG | + | chr4_4:82338341-82338360 | Msa0708710:intron | 25.0% |
| !!! | GTATTGATCTTTTACAGAAT+AGG | + | chr4_4:82338564-82338583 | Msa0708710:intron | 25.0% |
| !! | AACAATTTTCCACAAAATCA+AGG | - | chr4_4:82338723-82338742 | None:intergenic | 25.0% |
| ! | TTACCTGATTTCATATAACT+TGG | + | chr4_4:82338762-82338781 | Msa0708710:intron | 25.0% |
| ! | TTTAAACACAAGCTGTAATA+TGG | + | chr4_4:82338859-82338878 | Msa0708710:intron | 25.0% |
| !! | AAAAAATGTGTTACGACTTT+TGG | - | chr4_4:82338923-82338942 | None:intergenic | 25.0% |
| !!! | AAAGTCGTAACACATTTTTT+TGG | + | chr4_4:82338923-82338942 | Msa0708710:intron | 25.0% |
| !! | TACATTTGAAGCAGCTTTTA+TGG | - | chr4_4:82337670-82337689 | None:intergenic | 30.0% |
| TTCAAATGTAGTCATTGCAA+GGG | + | chr4_4:82337680-82337699 | Msa0708710:CDS | 30.0% | |
| ! | AGGAGCATATGAAGAATTTA+AGG | - | chr4_4:82337754-82337773 | None:intergenic | 30.0% |
| ATGTCATTGGTATCTCATTT+AGG | - | chr4_4:82337961-82337980 | None:intergenic | 30.0% | |
| ! | ACATTTTGAACAGCTTTTCA+AGG | + | chr4_4:82338043-82338062 | Msa0708710:CDS | 30.0% |
| GAATTAGCCATATGGAAATT+AGG | + | chr4_4:82338340-82338359 | Msa0708710:intron | 30.0% | |
| ! | TTCATAAATGAAGGTGCATT+CGG | + | chr4_4:82338884-82338903 | Msa0708710:intron | 30.0% |
| ! | TTTTATTAAACAGGTGACAC+TGG | + | chr4_4:82338946-82338965 | Msa0708710:intron | 30.0% |
| ! | TCATTTTGCACAACTTTTCA+TGG | + | chr4_4:82339072-82339091 | Msa0708710:CDS | 30.0% |
| !! | TACATTTGAAGCAGCTTTTA+TGG | - | chr4_4:82337670-82337689 | None:intergenic | 30.0% |
| TTCAAATGTAGTCATTGCAA+GGG | + | chr4_4:82337680-82337699 | Msa0708710:CDS | 30.0% | |
| ! | AGGAGCATATGAAGAATTTA+AGG | - | chr4_4:82337754-82337773 | None:intergenic | 30.0% |
| ATGTCATTGGTATCTCATTT+AGG | - | chr4_4:82337961-82337980 | None:intergenic | 30.0% | |
| ! | ACATTTTGAACAGCTTTTCA+AGG | + | chr4_4:82338043-82338062 | Msa0708710:CDS | 30.0% |
| GAATTAGCCATATGGAAATT+AGG | + | chr4_4:82338340-82338359 | Msa0708710:intron | 30.0% | |
| ! | TTCATAAATGAAGGTGCATT+CGG | + | chr4_4:82338884-82338903 | Msa0708710:intron | 30.0% |
| ! | TTTTATTAAACAGGTGACAC+TGG | + | chr4_4:82338946-82338965 | Msa0708710:intron | 30.0% |
| ! | TCATTTTGCACAACTTTTCA+TGG | + | chr4_4:82339072-82339091 | Msa0708710:CDS | 30.0% |
| TGGAACTCTTGATAAATGCA+AGG | + | chr4_4:82337589-82337608 | Msa0708710:CDS | 35.0% | |
| ! | TTGAAGCAGCTTTTATGGTA+TGG | - | chr4_4:82337665-82337684 | None:intergenic | 35.0% |
| CTTCAAATGTAGTCATTGCA+AGG | + | chr4_4:82337679-82337698 | Msa0708710:CDS | 35.0% | |
| TCATTGCAAGGGAAATCTTA+CGG | + | chr4_4:82337691-82337710 | Msa0708710:CDS | 35.0% | |
| !! | GGCAATTTTAGCAAGAACTT+TGG | + | chr4_4:82338071-82338090 | Msa0708710:CDS | 35.0% |
| TTTGGTCCCTAATTTCCATA+TGG | - | chr4_4:82338350-82338369 | None:intergenic | 35.0% | |
| AACATGGAAGATAGTCTACT+TGG | - | chr4_4:82338593-82338612 | None:intergenic | 35.0% | |
| ! | TGTTGTGATCCTTGATTTTG+TGG | + | chr4_4:82338711-82338730 | Msa0708710:intron | 35.0% |
| GGTCCAAGTTATATGAAATC+AGG | - | chr4_4:82338768-82338787 | None:intergenic | 35.0% | |
| AAAGCAATCATACGTTTCGT+TGG | + | chr4_4:82338804-82338823 | Msa0708710:intron | 35.0% | |
| ATCATACGTTTCGTTGGATA+TGG | + | chr4_4:82338810-82338829 | Msa0708710:intron | 35.0% | |
| TGGAACTCTTGATAAATGCA+AGG | + | chr4_4:82337589-82337608 | Msa0708710:CDS | 35.0% | |
| ! | TTGAAGCAGCTTTTATGGTA+TGG | - | chr4_4:82337665-82337684 | None:intergenic | 35.0% |
| CTTCAAATGTAGTCATTGCA+AGG | + | chr4_4:82337679-82337698 | Msa0708710:CDS | 35.0% | |
| TCATTGCAAGGGAAATCTTA+CGG | + | chr4_4:82337691-82337710 | Msa0708710:CDS | 35.0% | |
| !! | GGCAATTTTAGCAAGAACTT+TGG | + | chr4_4:82338071-82338090 | Msa0708710:CDS | 35.0% |
| TTTGGTCCCTAATTTCCATA+TGG | - | chr4_4:82338350-82338369 | None:intergenic | 35.0% | |
| AACATGGAAGATAGTCTACT+TGG | - | chr4_4:82338593-82338612 | None:intergenic | 35.0% | |
| ! | TGTTGTGATCCTTGATTTTG+TGG | + | chr4_4:82338711-82338730 | Msa0708710:intron | 35.0% |
| GGTCCAAGTTATATGAAATC+AGG | - | chr4_4:82338768-82338787 | None:intergenic | 35.0% | |
| AAAGCAATCATACGTTTCGT+TGG | + | chr4_4:82338804-82338823 | Msa0708710:intron | 35.0% | |
| ATCATACGTTTCGTTGGATA+TGG | + | chr4_4:82338810-82338829 | Msa0708710:intron | 35.0% | |
| ATAGAGAATTCCATCCATGG+AGG | - | chr4_4:82338015-82338034 | None:intergenic | 40.0% | |
| GCAATAGAGAATTCCATCCA+TGG | - | chr4_4:82338018-82338037 | None:intergenic | 40.0% | |
| !! | GAACAGCTTTTCAAGGAATC+TGG | + | chr4_4:82338050-82338069 | Msa0708710:CDS | 40.0% |
| TTCTGACAAAGCAAATGAGC+TGG | + | chr4_4:82338231-82338250 | Msa0708710:CDS | 40.0% | |
| AGACTATCTTCCATGTTCAG+TGG | + | chr4_4:82338596-82338615 | Msa0708710:CDS | 40.0% | |
| ! | TGTCGCGATTCTTGATTTTG+AGG | + | chr4_4:82338674-82338693 | Msa0708710:intron | 40.0% |
| ! | TGTGTTACGACTTTTGGTCA+CGG | - | chr4_4:82338917-82338936 | None:intergenic | 40.0% |
| ATTAAACAGGTGACACTGGA+AGG | + | chr4_4:82338950-82338969 | Msa0708710:intron | 40.0% | |
| TCTACCACAAGACATGCTTT+AGG | + | chr4_4:82338978-82338997 | Msa0708710:CDS | 40.0% | |
| CATAGCTTGAATGTGTGAGA+GGG | - | chr4_4:82339021-82339040 | None:intergenic | 40.0% | |
| CAAAATGAACCCTGCAGTAT+AGG | - | chr4_4:82339060-82339079 | None:intergenic | 40.0% | |
| ! | GCACAACTTTTCATGGAGAA+AGG | + | chr4_4:82339079-82339098 | Msa0708710:CDS | 40.0% |
| TACTCAAATCTGCACACAAG+AGG | + | chr4_4:82339116-82339135 | Msa0708710:CDS | 40.0% | |
| AAATCTGCACACAAGAGGAA+TGG | + | chr4_4:82339121-82339140 | Msa0708710:CDS | 40.0% | |
| GTTTCTTCTGGATGATCTTC+AGG | - | chr4_4:82339202-82339221 | None:intergenic | 40.0% | |
| ATAGAGAATTCCATCCATGG+AGG | - | chr4_4:82338015-82338034 | None:intergenic | 40.0% | |
| GCAATAGAGAATTCCATCCA+TGG | - | chr4_4:82338018-82338037 | None:intergenic | 40.0% | |
| !! | GAACAGCTTTTCAAGGAATC+TGG | + | chr4_4:82338050-82338069 | Msa0708710:CDS | 40.0% |
| TTCTGACAAAGCAAATGAGC+TGG | + | chr4_4:82338231-82338250 | Msa0708710:CDS | 40.0% | |
| AGACTATCTTCCATGTTCAG+TGG | + | chr4_4:82338596-82338615 | Msa0708710:CDS | 40.0% | |
| ! | TGTCGCGATTCTTGATTTTG+AGG | + | chr4_4:82338674-82338693 | Msa0708710:intron | 40.0% |
| ! | TGTGTTACGACTTTTGGTCA+CGG | - | chr4_4:82338917-82338936 | None:intergenic | 40.0% |
| ATTAAACAGGTGACACTGGA+AGG | + | chr4_4:82338950-82338969 | Msa0708710:intron | 40.0% | |
| TCTACCACAAGACATGCTTT+AGG | + | chr4_4:82338978-82338997 | Msa0708710:CDS | 40.0% | |
| CATAGCTTGAATGTGTGAGA+GGG | - | chr4_4:82339021-82339040 | None:intergenic | 40.0% | |
| CAAAATGAACCCTGCAGTAT+AGG | - | chr4_4:82339060-82339079 | None:intergenic | 40.0% | |
| ! | GCACAACTTTTCATGGAGAA+AGG | + | chr4_4:82339079-82339098 | Msa0708710:CDS | 40.0% |
| TACTCAAATCTGCACACAAG+AGG | + | chr4_4:82339116-82339135 | Msa0708710:CDS | 40.0% | |
| AAATCTGCACACAAGAGGAA+TGG | + | chr4_4:82339121-82339140 | Msa0708710:CDS | 40.0% | |
| GTTTCTTCTGGATGATCTTC+AGG | - | chr4_4:82339202-82339221 | None:intergenic | 40.0% | |
| ! | TGGAGGAGTATGTACTCATC+TGG | - | chr4_4:82337998-82338017 | None:intergenic | 45.0% |
| GATGAGTACATACTCCTCCA+TGG | + | chr4_4:82337998-82338017 | Msa0708710:intron | 45.0% | |
| AGTACATACTCCTCCATGGA+TGG | + | chr4_4:82338002-82338021 | Msa0708710:CDS | 45.0% | |
| ! | AACCTTTTCCAGGGGATAGA+CGG | - | chr4_4:82338654-82338673 | None:intergenic | 45.0% |
| ! | ATCGCGACAAACCTTTTCCA+GGG | - | chr4_4:82338663-82338682 | None:intergenic | 45.0% |
| ! | AATCGCGACAAACCTTTTCC+AGG | - | chr4_4:82338664-82338683 | None:intergenic | 45.0% |
| CACACCTAAAGCATGTCTTG+TGG | - | chr4_4:82338985-82339004 | None:intergenic | 45.0% | |
| GCATAGCTTGAATGTGTGAG+AGG | - | chr4_4:82339022-82339041 | None:intergenic | 45.0% | |
| TCAAGCTATGCTGCTCTTGA+TGG | + | chr4_4:82339031-82339050 | Msa0708710:CDS | 45.0% | |
| !! | TTGATGGTGTCCTATACTGC+AGG | + | chr4_4:82339047-82339066 | Msa0708710:CDS | 45.0% |
| ! | TGATGGTGTCCTATACTGCA+GGG | + | chr4_4:82339048-82339067 | Msa0708710:CDS | 45.0% |
| ! | TGGAGGAGTATGTACTCATC+TGG | - | chr4_4:82337998-82338017 | None:intergenic | 45.0% |
| GATGAGTACATACTCCTCCA+TGG | + | chr4_4:82337998-82338017 | Msa0708710:intron | 45.0% | |
| AGTACATACTCCTCCATGGA+TGG | + | chr4_4:82338002-82338021 | Msa0708710:CDS | 45.0% | |
| ! | AACCTTTTCCAGGGGATAGA+CGG | - | chr4_4:82338654-82338673 | None:intergenic | 45.0% |
| ! | ATCGCGACAAACCTTTTCCA+GGG | - | chr4_4:82338663-82338682 | None:intergenic | 45.0% |
| ! | AATCGCGACAAACCTTTTCC+AGG | - | chr4_4:82338664-82338683 | None:intergenic | 45.0% |
| CACACCTAAAGCATGTCTTG+TGG | - | chr4_4:82338985-82339004 | None:intergenic | 45.0% | |
| GCATAGCTTGAATGTGTGAG+AGG | - | chr4_4:82339022-82339041 | None:intergenic | 45.0% | |
| TCAAGCTATGCTGCTCTTGA+TGG | + | chr4_4:82339031-82339050 | Msa0708710:CDS | 45.0% | |
| !! | TTGATGGTGTCCTATACTGC+AGG | + | chr4_4:82339047-82339066 | Msa0708710:CDS | 45.0% |
| ! | TGATGGTGTCCTATACTGCA+GGG | + | chr4_4:82339048-82339067 | Msa0708710:CDS | 45.0% |
| !! | TATGTATATAAATAATTAAA+AGG | - | chr4_4:82337774-82337793 | None:intergenic | 5.0% |
| !! | AAAATTAAAATAAAAAATGA+AGG | - | chr4_4:82338108-82338127 | None:intergenic | 5.0% |
| !! | TATGTATATAAATAATTAAA+AGG | - | chr4_4:82337774-82337793 | None:intergenic | 5.0% |
| !! | AAAATTAAAATAAAAAATGA+AGG | - | chr4_4:82338108-82338127 | None:intergenic | 5.0% |
| TTCCATGTTCAGTGGTACCC+TGG | + | chr4_4:82338604-82338623 | Msa0708710:CDS | 50.0% | |
| GCAAGTCGCACATTTGTCCA+GGG | - | chr4_4:82338624-82338643 | None:intergenic | 50.0% | |
| AGCAAGTCGCACATTTGTCC+AGG | - | chr4_4:82338625-82338644 | None:intergenic | 50.0% | |
| !! | CTCTAAAACCGTCTATCCCC+TGG | + | chr4_4:82338643-82338662 | Msa0708710:CDS | 50.0% |
| AACCGTCTATCCCCTGGAAA+AGG | + | chr4_4:82338649-82338668 | Msa0708710:CDS | 50.0% | |
| ! | TCGCGACAAACCTTTTCCAG+GGG | - | chr4_4:82338662-82338681 | None:intergenic | 50.0% |
| ! | CGACTTTTGGTCACGGAGTT+TGG | - | chr4_4:82338910-82338929 | None:intergenic | 50.0% |
| ! | TGCTTTAGGTGTGCTCATGC+AGG | + | chr4_4:82338992-82339011 | Msa0708710:CDS | 50.0% |
| ! | GCTTTAGGTGTGCTCATGCA+GGG | + | chr4_4:82338993-82339012 | Msa0708710:CDS | 50.0% |
| ! | GGTGCTTCTGCTGATTGTGA+AGG | - | chr4_4:82339181-82339200 | None:intergenic | 50.0% |
| TTCCATGTTCAGTGGTACCC+TGG | + | chr4_4:82338604-82338623 | Msa0708710:CDS | 50.0% | |
| GCAAGTCGCACATTTGTCCA+GGG | - | chr4_4:82338624-82338643 | None:intergenic | 50.0% | |
| AGCAAGTCGCACATTTGTCC+AGG | - | chr4_4:82338625-82338644 | None:intergenic | 50.0% | |
| !! | CTCTAAAACCGTCTATCCCC+TGG | + | chr4_4:82338643-82338662 | Msa0708710:CDS | 50.0% |
| AACCGTCTATCCCCTGGAAA+AGG | + | chr4_4:82338649-82338668 | Msa0708710:CDS | 50.0% | |
| ! | TCGCGACAAACCTTTTCCAG+GGG | - | chr4_4:82338662-82338681 | None:intergenic | 50.0% |
| ! | CGACTTTTGGTCACGGAGTT+TGG | - | chr4_4:82338910-82338929 | None:intergenic | 50.0% |
| ! | TGCTTTAGGTGTGCTCATGC+AGG | + | chr4_4:82338992-82339011 | Msa0708710:CDS | 50.0% |
| ! | GCTTTAGGTGTGCTCATGCA+GGG | + | chr4_4:82338993-82339012 | Msa0708710:CDS | 50.0% |
| ! | GGTGCTTCTGCTGATTGTGA+AGG | - | chr4_4:82339181-82339200 | None:intergenic | 50.0% |
| ! | GTCCAGGGTACCACTGAACA+TGG | - | chr4_4:82338609-82338628 | None:intergenic | 55.0% |
| ! | GTCCAGGGTACCACTGAACA+TGG | - | chr4_4:82338609-82338628 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 82337578 | 82339228 | 82337578 | ID=Msa0708710;Name=Msa0708710 |
| chr4_4 | mRNA | 82337578 | 82339228 | 82337578 | ID=Msa0708710-mRNA-1;Parent=Msa0708710;Name=Msa0708710-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|1|1|5|0|205 |
| chr4_4 | exon | 82337578 | 82337712 | 82337578 | ID=Msa0708710-mRNA-1:exon:27096;Parent=Msa0708710-mRNA-1 |
| chr4_4 | exon | 82337999 | 82338092 | 82337999 | ID=Msa0708710-mRNA-1:exon:27097;Parent=Msa0708710-mRNA-1 |
| chr4_4 | exon | 82338224 | 82338252 | 82338224 | ID=Msa0708710-mRNA-1:exon:27098;Parent=Msa0708710-mRNA-1 |
| chr4_4 | exon | 82338581 | 82338670 | 82338581 | ID=Msa0708710-mRNA-1:exon:27099;Parent=Msa0708710-mRNA-1 |
| chr4_4 | exon | 82338959 | 82339228 | 82338959 | ID=Msa0708710-mRNA-1:exon:27100;Parent=Msa0708710-mRNA-1 |
| chr4_4 | CDS | 82337578 | 82337712 | 82337578 | ID=Msa0708710-mRNA-1:cds;Parent=Msa0708710-mRNA-1 |
| chr4_4 | CDS | 82337999 | 82338092 | 82337999 | ID=Msa0708710-mRNA-1:cds;Parent=Msa0708710-mRNA-1 |
| chr4_4 | CDS | 82338224 | 82338252 | 82338224 | ID=Msa0708710-mRNA-1:cds;Parent=Msa0708710-mRNA-1 |
| chr4_4 | CDS | 82338581 | 82338670 | 82338581 | ID=Msa0708710-mRNA-1:cds;Parent=Msa0708710-mRNA-1 |
| chr4_4 | CDS | 82338959 | 82339228 | 82338959 | ID=Msa0708710-mRNA-1:cds;Parent=Msa0708710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
