AlfalfaGEDB | Msa0710830

M. sativa cultivar zhongmu-4 / Msa0710830

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0710830	AES95291.1	92.241	232	13	2	1	227	1	232	1.98e-142	409

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0710830	G7K024	92.241	232	13	2	1	227	1	232	9.44e-143	409

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TFs/TRs:

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Gene ID	Type	Classification
Msa0710830	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0710830	MtrunA17_Chr5g0406791	93.827	162	9	1	1	161	1	162	4.15e-109	311

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0710830	AT4G35700.1	31.746	189	98	8	75	243	98	275	9.90e-18	80.5
Msa0710830	AT4G35610.1	54.000	50	23	0	106	155	129	178	2.07e-13	68.6

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Find 94 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATGTCCAGAATGCAAGA+GGG	0.691308	5_1:-2645991	Msa0710830:CDS
AACCTCTCTGAAAACACCGG+AGG	0.709220	5_1:-2646219	Msa0710830:CDS
AAGGTAACGAAGAAGACGAT+GGG	0.573776	5_1:-2646142	Msa0710830:CDS
ACCACCTGCAGAGGACCCTG+CGG	0.702134	5_1:+2645048	None:intergenic
ACCCGCTGTGACAAACACTG+AGG	0.799006	5_1:-2646246	Msa0710830:CDS
ACCGCAGGGTCCTCTGCAGG+TGG	0.618162	5_1:-2645049	Msa0710830:CDS
ACGGTGCTAAAAGTTGGTGG+AGG	0.599469	5_1:+2645897	None:intergenic
AGATCGATCCAATCAACCGC+AGG	0.563542	5_1:-2645064	Msa0710830:CDS
AGATGAACCGTCGGCAGTTA+GGG	0.382592	5_1:+2646097	None:intergenic
AGCAGCACCTGCACCTGCAC+CGG	0.523537	5_1:-2644999	Msa0710830:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCATCATCATCAGTTAGTT+CGG	+	chr5_1:2645055-2645074	None:intergenic	30.0%
ATAAAGCACACACTCATATA+AGG	+	chr5_1:2646059-2646078	None:intergenic	30.0%
TTACGTCGTTAATTGTTTAC+AGG	-	chr5_1:2646082-2646101	Msa0710830:CDS	30.0%
ATCATCATCATCAGTTAGTT+CGG	+	chr5_1:2645055-2645074	None:intergenic	30.0%
ATAAAGCACACACTCATATA+AGG	+	chr5_1:2646059-2646078	None:intergenic	30.0%
TTACGTCGTTAATTGTTTAC+AGG	-	chr5_1:2646082-2646101	Msa0710830:CDS	30.0%
GATGATGATTTGATCCCAAA+TGG	-	chr5_1:2645066-2645085	Msa0710830:CDS	35.0%
TCATCTGTTATCCAACAAGT+TGG	-	chr5_1:2645159-2645178	Msa0710830:intron	35.0%
ATGGTCATGTCTTCAAGAAA+AGG	-	chr5_1:2645187-2645206	Msa0710830:intron	35.0%
CATGTCTTCAAGAAAAGGAA+AGG	-	chr5_1:2645192-2645211	Msa0710830:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	2644904	2646357	2644904	ID=Msa0710830;Name=Msa0710830
chr5_1	mRNA	2644904	2646357	2644904	ID=Msa0710830-mRNA-1;Parent=Msa0710830;Name=Msa0710830-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0\|0\|0\|1\|1\|1\|2\|0\|244
chr5_1	exon	2645877	2646357	2645877	ID=Msa0710830-mRNA-1:exon:900;Parent=Msa0710830-mRNA-1
chr5_1	exon	2644904	2645157	2644904	ID=Msa0710830-mRNA-1:exon:899;Parent=Msa0710830-mRNA-1
chr5_1	CDS	2645877	2646357	2645877	ID=Msa0710830-mRNA-1:cds;Parent=Msa0710830-mRNA-1
chr5_1	CDS	2644904	2645157	2644904	ID=Msa0710830-mRNA-1:cds;Parent=Msa0710830-mRNA-1

Gene Sequence

>Msa0710830

ATGGAAAACGTCCCTGCCAATGAGTCAAGCCCAAACAACACCACACCAGCCACTTCCCCTCAACGCACCTTGGCTGAACATGATCAGCCACCCGCTGTGACAAACACTGAGGATGAAACCTCTCTGAAAACACCGGAGGAAGTCCTGGCCGAACTAACTGATGATGATGATTTGATCCCAAATGGTGGTGATGAAGGTAACGAAGAAGACGATGGGGCTTTTAGGACGATGGTTATCGCCCTAACTGCCGACGGTTCATCTGTTATCCAACAAGTTGGTTCTGATGGTCATGTCTTCAAGAAAAGGAAAGGCAACCAAGTGAAAGACCCTCCATCAGGATCCCCAACATGTCCAGAATGCAAGAGGGAGTTTGCCACATGGAAAGCTGCGTTTGGGCATATGCGCAAGCATCCAGAGCGTGCTCATCGGGGGTTTTTCCCTCCACCAACTTTTAGCACCGTTGCACCCGTTCCTGCTGAGGGTGATGGTCTTGGCGACAAGATCAATGAAGGGGTGAGCTCATTAGCTCGCGAGCTTGTGTTCGATCTGAATAGATCGATCCAATCAACCGCAGGGTCCTCTGCAGGTGGTAGTGGTCATATCACTAAGGAAATCCAAGCAGCACCTGCACCTGCACCGGCTGCGAATGAAGAAAGACGGAGACGGGACTTTGATCTGAACGAGTTGCCACCTCCAGAAGAGGATGATGAAACAGAAGAGAAATGCGACTTATAA

Protein sequence

>Msa0710830

MENVPANESSPNNTTPATSPQRTLAEHDQPPAVTNTEDETSLKTPEEVLAELTDDDDLIPNGGDEGNEEDDGAFRTMVIALTADGSSVIQQVGSDGHVFKKRKGNQVKDPPSGSPTCPECKREFATWKAAFGHMRKHPERAHRGFFPPPTFSTVAPVPAEGDGLGDKINEGVSSLARELVFDLNRSIQSTAGSSAGGSGHITKEIQAAPAPAPAANEERRRRDFDLNELPPPEEDDETEEKCDL*