Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0710830 | AES95291.1 | 92.241 | 232 | 13 | 2 | 1 | 227 | 1 | 232 | 1.98e-142 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0710830 | G7K024 | 92.241 | 232 | 13 | 2 | 1 | 227 | 1 | 232 | 9.44e-143 | 409 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0710830 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0710830 | MtrunA17_Chr5g0406791 | 93.827 | 162 | 9 | 1 | 1 | 161 | 1 | 162 | 4.15e-109 | 311 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0710830 | AT4G35700.1 | 31.746 | 189 | 98 | 8 | 75 | 243 | 98 | 275 | 9.90e-18 | 80.5 |
| Msa0710830 | AT4G35610.1 | 54.000 | 50 | 23 | 0 | 106 | 155 | 129 | 178 | 2.07e-13 | 68.6 |
Find 94 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGTTTCATCATCCTCTTC+TGG | 0.204274 | 5_1:+2644923 | None:intergenic |
| GTGGCTGGTGTGGTGTTGTT+TGG | 0.232681 | 5_1:+2646305 | None:intergenic |
| GCATCCAGAGCGTGCTCATC+GGG | 0.273262 | 5_1:-2645928 | Msa0710830:CDS |
| GCAAACTCCCTCTTGCATTC+TGG | 0.280646 | 5_1:+2645984 | None:intergenic |
| CAGATGAACCGTCGGCAGTT+AGG | 0.305066 | 5_1:+2646096 | None:intergenic |
| TCTTGCATTCTGGACATGTT+GGG | 0.316539 | 5_1:+2645994 | None:intergenic |
| TGGCTGGTGTGGTGTTGTTT+GGG | 0.349412 | 5_1:+2646306 | None:intergenic |
| GCCACATGGAAAGCTGCGTT+TGG | 0.354309 | 5_1:-2645963 | Msa0710830:CDS |
| CTCTTGCATTCTGGACATGT+TGG | 0.358689 | 5_1:+2645993 | None:intergenic |
| GTTGTTTGGGCTTGACTCAT+TGG | 0.370557 | 5_1:+2646319 | None:intergenic |
| TACCTTCATCACCACCATTT+GGG | 0.373337 | 5_1:+2646159 | None:intergenic |
| AGATGAACCGTCGGCAGTTA+GGG | 0.382592 | 5_1:+2646097 | None:intergenic |
| TTCGCAGCCGGTGCAGGTGC+AGG | 0.386846 | 5_1:+2644992 | None:intergenic |
| CTGATGGAGGGTCTTTCACT+TGG | 0.398758 | 5_1:+2646021 | None:intergenic |
| CCACATGGAAAGCTGCGTTT+GGG | 0.399070 | 5_1:-2645962 | Msa0710830:CDS |
| TCTTCATTCGCAGCCGGTGC+AGG | 0.409609 | 5_1:+2644986 | None:intergenic |
| TTACCTTCATCACCACCATT+TGG | 0.411718 | 5_1:+2646158 | None:intergenic |
| CAGAGGACCCTGCGGTTGAT+TGG | 0.413835 | 5_1:+2645056 | None:intergenic |
| TTTGGGCTTGACTCATTGGC+AGG | 0.414848 | 5_1:+2646323 | None:intergenic |
| GGGTCCTCTGCAGGTGGTAG+TGG | 0.433493 | 5_1:-2645043 | Msa0710830:CDS |
| GACCATCAGAACCAACTTGT+TGG | 0.436035 | 5_1:+2646069 | None:intergenic |
| GTGCAGGTGCAGGTGCTGCT+TGG | 0.440372 | 5_1:+2645002 | None:intergenic |
| ATCATCATCATCAGTTAGTT+CGG | 0.443434 | 5_1:+2646187 | None:intergenic |
| TCCTCAGTGTTTGTCACAGC+GGG | 0.444401 | 5_1:+2646245 | None:intergenic |
| TCATCATCCTCTTCTGGAGG+TGG | 0.459723 | 5_1:+2644929 | None:intergenic |
| ATGGTCATGTCTTCAAGAAA+AGG | 0.461097 | 5_1:-2646052 | Msa0710830:CDS |
| GTTCAGCCAAGGTGCGTTGA+GGG | 0.469269 | 5_1:+2646279 | None:intergenic |
| TTGTTTACAGGTGATGGTCT+TGG | 0.469520 | 5_1:-2645145 | Msa0710830:intron |
| ATCCAACAAGTTGGTTCTGA+TGG | 0.472826 | 5_1:-2646071 | Msa0710830:CDS |
| GAAAACACCGGAGGAAGTCC+TGG | 0.473695 | 5_1:-2646210 | Msa0710830:CDS |
| CAAGGTGCGTTGAGGGGAAG+TGG | 0.482830 | 5_1:+2646286 | None:intergenic |
| TATATACCCTCAGCAGGAAC+GGG | 0.491670 | 5_1:+2645870 | None:intergenic |
| TCAACCGCAGGGTCCTCTGC+AGG | 0.492863 | 5_1:-2645052 | Msa0710830:CDS |
| CGTCTTTCTTCATTCGCAGC+CGG | 0.495573 | 5_1:+2644980 | None:intergenic |
| GAATGAAGAAAGACGGAGAC+GGG | 0.497570 | 5_1:-2644972 | Msa0710830:CDS |
| CACTTCCCCTCAACGCACCT+TGG | 0.498843 | 5_1:-2646285 | Msa0710830:CDS |
| CATGTTGGGGATCCTGATGG+AGG | 0.503638 | 5_1:+2646008 | None:intergenic |
| GGACATGTTGGGGATCCTGA+TGG | 0.504468 | 5_1:+2646005 | None:intergenic |
| CTTGCATTCTGGACATGTTG+GGG | 0.506162 | 5_1:+2645995 | None:intergenic |
| CAAGTGAAAGACCCTCCATC+AGG | 0.513855 | 5_1:-2646020 | Msa0710830:CDS |
| GTGCGTTGAGGGGAAGTGGC+TGG | 0.516360 | 5_1:+2646290 | None:intergenic |
| CTTGGCGACAAGATCAATGA+AGG | 0.517419 | 5_1:-2645127 | Msa0710830:CDS |
| AGCATCCAGAGCGTGCTCAT+CGG | 0.517955 | 5_1:-2645929 | Msa0710830:CDS |
| AGCAGCACCTGCACCTGCAC+CGG | 0.523537 | 5_1:-2644999 | Msa0710830:CDS |
| CGTTGCACCCGTTCCTGCTG+AGG | 0.526903 | 5_1:-2645877 | Msa0710830:CDS |
| GTAATATATATACCCTCAGC+AGG | 0.531989 | 5_1:+2645864 | None:intergenic |
| GATGATGATTTGATCCCAAA+TGG | 0.535324 | 5_1:-2646173 | Msa0710830:CDS |
| TCATCTGTTATCCAACAAGT+TGG | 0.537358 | 5_1:-2646080 | Msa0710830:CDS |
| GTTTCATCATCCTCTTCTGG+AGG | 0.539642 | 5_1:+2644926 | None:intergenic |
| CATCATCAGTTAGTTCGGCC+AGG | 0.545384 | 5_1:+2646192 | None:intergenic |
| ATGTTGGGGATCCTGATGGA+GGG | 0.546248 | 5_1:+2646009 | None:intergenic |
| ATATATACCCTCAGCAGGAA+CGG | 0.548442 | 5_1:+2645869 | None:intergenic |
| AGTTCGGCCAGGACTTCCTC+CGG | 0.548973 | 5_1:+2646203 | None:intergenic |
| ATCCCAAATGGTGGTGATGA+AGG | 0.554230 | 5_1:-2646161 | Msa0710830:CDS |
| TTGAGGGGAAGTGGCTGGTG+TGG | 0.560312 | 5_1:+2646295 | None:intergenic |
| AGATCGATCCAATCAACCGC+AGG | 0.563542 | 5_1:-2645064 | Msa0710830:CDS |
| CGAGTTGCCACCTCCAGAAG+AGG | 0.565350 | 5_1:-2644936 | Msa0710830:CDS |
| GGTGCAACGGTGCTAAAAGT+TGG | 0.571929 | 5_1:+2645891 | None:intergenic |
| AAGGTAACGAAGAAGACGAT+GGG | 0.573776 | 5_1:-2646142 | Msa0710830:CDS |
| CTCAGCAGGAACGGGTGCAA+CGG | 0.574361 | 5_1:+2645878 | None:intergenic |
| GTTGCACCCGTTCCTGCTGA+GGG | 0.581395 | 5_1:-2645876 | Msa0710830:intron |
| TCAGTGTTTGTCACAGCGGG+TGG | 0.591498 | 5_1:+2646248 | None:intergenic |
| GCAACGGTGCTAAAAGTTGG+TGG | 0.591524 | 5_1:+2645894 | None:intergenic |
| CATGTCTTCAAGAAAAGGAA+AGG | 0.594271 | 5_1:-2646047 | Msa0710830:CDS |
| ATCCAGAGCGTGCTCATCGG+GGG | 0.598304 | 5_1:-2645926 | Msa0710830:CDS |
| ACGGTGCTAAAAGTTGGTGG+AGG | 0.599469 | 5_1:+2645897 | None:intergenic |
| TTCAGCCAAGGTGCGTTGAG+GGG | 0.602294 | 5_1:+2646280 | None:intergenic |
| TTGGGCTTGACTCATTGGCA+GGG | 0.602976 | 5_1:+2646324 | None:intergenic |
| TGTTCAGCCAAGGTGCGTTG+AGG | 0.606127 | 5_1:+2646278 | None:intergenic |
| TGGTAGTGGTCATATCACTA+AGG | 0.608602 | 5_1:-2645029 | Msa0710830:CDS |
| CAACATGTCCAGAATGCAAG+AGG | 0.611183 | 5_1:-2645992 | Msa0710830:CDS |
| TGGCTGATCATGTTCAGCCA+AGG | 0.612094 | 5_1:+2646268 | None:intergenic |
| ACCGCAGGGTCCTCTGCAGG+TGG | 0.618162 | 5_1:-2645049 | Msa0710830:CDS |
| TGAAACCTCTCTGAAAACAC+CGG | 0.622863 | 5_1:-2646222 | Msa0710830:CDS |
| TTGGCGACAAGATCAATGAA+GGG | 0.623712 | 5_1:-2645126 | Msa0710830:CDS |
| ATCCTCAGTGTTTGTCACAG+CGG | 0.628423 | 5_1:+2646244 | None:intergenic |
| CGGCTGCGAATGAAGAAAGA+CGG | 0.631768 | 5_1:-2644979 | Msa0710830:CDS |
| CGGTGCTAAAAGTTGGTGGA+GGG | 0.635586 | 5_1:+2645898 | None:intergenic |
| GAAGGTAACGAAGAAGACGA+TGG | 0.639373 | 5_1:-2646143 | Msa0710830:CDS |
| GCAAGAGGGAGTTTGCCACA+TGG | 0.640414 | 5_1:-2645977 | Msa0710830:CDS |
| TTGGATAACAGATGAACCGT+CGG | 0.650442 | 5_1:+2646088 | None:intergenic |
| CGAATGAAGAAAGACGGAGA+CGG | 0.650910 | 5_1:-2644973 | Msa0710830:CDS |
| CATCCAGAGCGTGCTCATCG+GGG | 0.656726 | 5_1:-2645927 | Msa0710830:CDS |
| GATCGATCCAATCAACCGCA+GGG | 0.660372 | 5_1:-2645063 | Msa0710830:CDS |
| ATGACCACTACCACCTGCAG+AGG | 0.660468 | 5_1:+2645039 | None:intergenic |
| TGGCGACAAGATCAATGAAG+GGG | 0.669025 | 5_1:-2645125 | Msa0710830:CDS |
| GTTATCGCCCTAACTGCCGA+CGG | 0.669691 | 5_1:-2646104 | Msa0710830:CDS |
| CCCAAACGCAGCTTTCCATG+TGG | 0.686185 | 5_1:+2645962 | None:intergenic |
| AACATGTCCAGAATGCAAGA+GGG | 0.691308 | 5_1:-2645991 | Msa0710830:CDS |
| ACCACCTGCAGAGGACCCTG+CGG | 0.702134 | 5_1:+2645048 | None:intergenic |
| AACCTCTCTGAAAACACCGG+AGG | 0.709220 | 5_1:-2646219 | Msa0710830:CDS |
| GATGATTTGATCCCAAATGG+TGG | 0.741325 | 5_1:-2646170 | Msa0710830:CDS |
| AGGTAACGAAGAAGACGATG+GGG | 0.743243 | 5_1:-2646141 | Msa0710830:CDS |
| ACCCGCTGTGACAAACACTG+AGG | 0.799006 | 5_1:-2646246 | Msa0710830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGACTATATATATAGTTA+GGG | + | chr5_1:2645405-2645424 | None:intergenic | 15.0% |
| !! | ATAAGACTATATATATAGTT+AGG | + | chr5_1:2645406-2645425 | None:intergenic | 15.0% |
| !! | AAAAAATTAGATCTAAATCA+TGG | + | chr5_1:2645554-2645573 | None:intergenic | 15.0% |
| !!! | AAAACATTTCAATTATCTTT+TGG | + | chr5_1:2645585-2645604 | None:intergenic | 15.0% |
| !! | AAATGATTTGAAAAAAACTT+AGG | - | chr5_1:2645947-2645966 | Msa0710830:CDS | 15.0% |
| !! | TAAGACTATATATATAGTTA+GGG | + | chr5_1:2645405-2645424 | None:intergenic | 15.0% |
| !! | ATAAGACTATATATATAGTT+AGG | + | chr5_1:2645406-2645425 | None:intergenic | 15.0% |
| !! | AAAAAATTAGATCTAAATCA+TGG | + | chr5_1:2645554-2645573 | None:intergenic | 15.0% |
| !!! | AAAACATTTCAATTATCTTT+TGG | + | chr5_1:2645585-2645604 | None:intergenic | 15.0% |
| !! | AAATGATTTGAAAAAAACTT+AGG | - | chr5_1:2645947-2645966 | Msa0710830:CDS | 15.0% |
| !!! | AGATTTTGATGTTTTAGTTA+TGG | - | chr5_1:2645450-2645469 | Msa0710830:intron | 20.0% |
| !! | CTAAAACATTCAATTTGAAT+AGG | + | chr5_1:2645797-2645816 | None:intergenic | 20.0% |
| !!! | AAATCATTTTGTTAAAAGAG+TGG | + | chr5_1:2645936-2645955 | None:intergenic | 20.0% |
| !!! | AGATTTTGATGTTTTAGTTA+TGG | - | chr5_1:2645450-2645469 | Msa0710830:intron | 20.0% |
| !! | CTAAAACATTCAATTTGAAT+AGG | + | chr5_1:2645797-2645816 | None:intergenic | 20.0% |
| !!! | AAATCATTTTGTTAAAAGAG+TGG | + | chr5_1:2645936-2645955 | None:intergenic | 20.0% |
| !! | GAGATGTTTTATGAAAAGTA+TGG | - | chr5_1:2645524-2645543 | Msa0710830:intron | 25.0% |
| !! | ACATTTCAATTATCTTTTGG+TGG | + | chr5_1:2645582-2645601 | None:intergenic | 25.0% |
| !! | GAGATGTTTTATGAAAAGTA+TGG | - | chr5_1:2645524-2645543 | Msa0710830:intron | 25.0% |
| !! | ACATTTCAATTATCTTTTGG+TGG | + | chr5_1:2645582-2645601 | None:intergenic | 25.0% |
| ATCATCATCATCAGTTAGTT+CGG | + | chr5_1:2645055-2645074 | None:intergenic | 30.0% | |
| ATAAAGCACACACTCATATA+AGG | + | chr5_1:2646059-2646078 | None:intergenic | 30.0% | |
| TTACGTCGTTAATTGTTTAC+AGG | - | chr5_1:2646082-2646101 | Msa0710830:CDS | 30.0% | |
| ATCATCATCATCAGTTAGTT+CGG | + | chr5_1:2645055-2645074 | None:intergenic | 30.0% | |
| ATAAAGCACACACTCATATA+AGG | + | chr5_1:2646059-2646078 | None:intergenic | 30.0% | |
| TTACGTCGTTAATTGTTTAC+AGG | - | chr5_1:2646082-2646101 | Msa0710830:CDS | 30.0% | |
| GATGATGATTTGATCCCAAA+TGG | - | chr5_1:2645066-2645085 | Msa0710830:CDS | 35.0% | |
| TCATCTGTTATCCAACAAGT+TGG | - | chr5_1:2645159-2645178 | Msa0710830:intron | 35.0% | |
| ATGGTCATGTCTTCAAGAAA+AGG | - | chr5_1:2645187-2645206 | Msa0710830:intron | 35.0% | |
| CATGTCTTCAAGAAAAGGAA+AGG | - | chr5_1:2645192-2645211 | Msa0710830:intron | 35.0% | |
| GTAATATATATACCCTCAGC+AGG | + | chr5_1:2645378-2645397 | None:intergenic | 35.0% | |
| CGTTAATTGTTTACAGGTGA+TGG | - | chr5_1:2646088-2646107 | Msa0710830:CDS | 35.0% | |
| GATGATGATTTGATCCCAAA+TGG | - | chr5_1:2645066-2645085 | Msa0710830:CDS | 35.0% | |
| TCATCTGTTATCCAACAAGT+TGG | - | chr5_1:2645159-2645178 | Msa0710830:intron | 35.0% | |
| ATGGTCATGTCTTCAAGAAA+AGG | - | chr5_1:2645187-2645206 | Msa0710830:intron | 35.0% | |
| CATGTCTTCAAGAAAAGGAA+AGG | - | chr5_1:2645192-2645211 | Msa0710830:intron | 35.0% | |
| GTAATATATATACCCTCAGC+AGG | + | chr5_1:2645378-2645397 | None:intergenic | 35.0% | |
| CGTTAATTGTTTACAGGTGA+TGG | - | chr5_1:2646088-2646107 | Msa0710830:CDS | 35.0% | |
| ! | TGAAACCTCTCTGAAAACAC+CGG | - | chr5_1:2645017-2645036 | Msa0710830:CDS | 40.0% |
| GATGATTTGATCCCAAATGG+TGG | - | chr5_1:2645069-2645088 | Msa0710830:CDS | 40.0% | |
| TACCTTCATCACCACCATTT+GGG | + | chr5_1:2645083-2645102 | None:intergenic | 40.0% | |
| TTACCTTCATCACCACCATT+TGG | + | chr5_1:2645084-2645103 | None:intergenic | 40.0% | |
| AAGGTAACGAAGAAGACGAT+GGG | - | chr5_1:2645097-2645116 | Msa0710830:CDS | 40.0% | |
| TTGGATAACAGATGAACCGT+CGG | + | chr5_1:2645154-2645173 | None:intergenic | 40.0% | |
| !! | ATCCAACAAGTTGGTTCTGA+TGG | - | chr5_1:2645168-2645187 | Msa0710830:intron | 40.0% |
| TCTTGCATTCTGGACATGTT+GGG | + | chr5_1:2645248-2645267 | None:intergenic | 40.0% | |
| AACATGTCCAGAATGCAAGA+GGG | - | chr5_1:2645248-2645267 | Msa0710830:intron | 40.0% | |
| ATATATACCCTCAGCAGGAA+CGG | + | chr5_1:2645373-2645392 | None:intergenic | 40.0% | |
| ! | TTGTTTACAGGTGATGGTCT+TGG | - | chr5_1:2646094-2646113 | Msa0710830:CDS | 40.0% |
| TTGGCGACAAGATCAATGAA+GGG | - | chr5_1:2646113-2646132 | Msa0710830:CDS | 40.0% | |
| !! | TGGTAGTGGTCATATCACTA+AGG | - | chr5_1:2646210-2646229 | Msa0710830:CDS | 40.0% |
| TCTGTTTCATCATCCTCTTC+TGG | + | chr5_1:2646319-2646338 | None:intergenic | 40.0% | |
| ! | TGAAACCTCTCTGAAAACAC+CGG | - | chr5_1:2645017-2645036 | Msa0710830:CDS | 40.0% |
| GATGATTTGATCCCAAATGG+TGG | - | chr5_1:2645069-2645088 | Msa0710830:CDS | 40.0% | |
| TACCTTCATCACCACCATTT+GGG | + | chr5_1:2645083-2645102 | None:intergenic | 40.0% | |
| TTACCTTCATCACCACCATT+TGG | + | chr5_1:2645084-2645103 | None:intergenic | 40.0% | |
| AAGGTAACGAAGAAGACGAT+GGG | - | chr5_1:2645097-2645116 | Msa0710830:CDS | 40.0% | |
| TTGGATAACAGATGAACCGT+CGG | + | chr5_1:2645154-2645173 | None:intergenic | 40.0% | |
| !! | ATCCAACAAGTTGGTTCTGA+TGG | - | chr5_1:2645168-2645187 | Msa0710830:intron | 40.0% |
| TCTTGCATTCTGGACATGTT+GGG | + | chr5_1:2645248-2645267 | None:intergenic | 40.0% | |
| AACATGTCCAGAATGCAAGA+GGG | - | chr5_1:2645248-2645267 | Msa0710830:intron | 40.0% | |
| ATATATACCCTCAGCAGGAA+CGG | + | chr5_1:2645373-2645392 | None:intergenic | 40.0% | |
| ! | TTGTTTACAGGTGATGGTCT+TGG | - | chr5_1:2646094-2646113 | Msa0710830:CDS | 40.0% |
| TTGGCGACAAGATCAATGAA+GGG | - | chr5_1:2646113-2646132 | Msa0710830:CDS | 40.0% | |
| !! | TGGTAGTGGTCATATCACTA+AGG | - | chr5_1:2646210-2646229 | Msa0710830:CDS | 40.0% |
| TCTGTTTCATCATCCTCTTC+TGG | + | chr5_1:2646319-2646338 | None:intergenic | 40.0% | |
| GTTGTTTGGGCTTGACTCAT+TGG | + | chr5_1:2644923-2644942 | None:intergenic | 45.0% | |
| ATCCTCAGTGTTTGTCACAG+CGG | + | chr5_1:2644998-2645017 | None:intergenic | 45.0% | |
| ! | ATCCCAAATGGTGGTGATGA+AGG | - | chr5_1:2645078-2645097 | Msa0710830:CDS | 45.0% |
| GAAGGTAACGAAGAAGACGA+TGG | - | chr5_1:2645096-2645115 | Msa0710830:CDS | 45.0% | |
| AGGTAACGAAGAAGACGATG+GGG | - | chr5_1:2645098-2645117 | Msa0710830:CDS | 45.0% | |
| ! | AAGAAGACGATGGGGCTTTT+AGG | - | chr5_1:2645106-2645125 | Msa0710830:CDS | 45.0% |
| GACCATCAGAACCAACTTGT+TGG | + | chr5_1:2645173-2645192 | None:intergenic | 45.0% | |
| CTTGCATTCTGGACATGTTG+GGG | + | chr5_1:2645247-2645266 | None:intergenic | 45.0% | |
| CTCTTGCATTCTGGACATGT+TGG | + | chr5_1:2645249-2645268 | None:intergenic | 45.0% | |
| CAACATGTCCAGAATGCAAG+AGG | - | chr5_1:2645247-2645266 | Msa0710830:intron | 45.0% | |
| TATATACCCTCAGCAGGAAC+GGG | + | chr5_1:2645372-2645391 | None:intergenic | 45.0% | |
| CTTGGCGACAAGATCAATGA+AGG | - | chr5_1:2646112-2646131 | Msa0710830:CDS | 45.0% | |
| TGGCGACAAGATCAATGAAG+GGG | - | chr5_1:2646114-2646133 | Msa0710830:CDS | 45.0% | |
| CGAATGAAGAAAGACGGAGA+CGG | - | chr5_1:2646266-2646285 | Msa0710830:CDS | 45.0% | |
| GAATGAAGAAAGACGGAGAC+GGG | - | chr5_1:2646267-2646286 | Msa0710830:CDS | 45.0% | |
| GTTTCATCATCCTCTTCTGG+AGG | + | chr5_1:2646316-2646335 | None:intergenic | 45.0% | |
| GTTGTTTGGGCTTGACTCAT+TGG | + | chr5_1:2644923-2644942 | None:intergenic | 45.0% | |
| ATCCTCAGTGTTTGTCACAG+CGG | + | chr5_1:2644998-2645017 | None:intergenic | 45.0% | |
| ! | ATCCCAAATGGTGGTGATGA+AGG | - | chr5_1:2645078-2645097 | Msa0710830:CDS | 45.0% |
| GAAGGTAACGAAGAAGACGA+TGG | - | chr5_1:2645096-2645115 | Msa0710830:CDS | 45.0% | |
| AGGTAACGAAGAAGACGATG+GGG | - | chr5_1:2645098-2645117 | Msa0710830:CDS | 45.0% | |
| ! | AAGAAGACGATGGGGCTTTT+AGG | - | chr5_1:2645106-2645125 | Msa0710830:CDS | 45.0% |
| GACCATCAGAACCAACTTGT+TGG | + | chr5_1:2645173-2645192 | None:intergenic | 45.0% | |
| CTTGCATTCTGGACATGTTG+GGG | + | chr5_1:2645247-2645266 | None:intergenic | 45.0% | |
| CTCTTGCATTCTGGACATGT+TGG | + | chr5_1:2645249-2645268 | None:intergenic | 45.0% | |
| CAACATGTCCAGAATGCAAG+AGG | - | chr5_1:2645247-2645266 | Msa0710830:intron | 45.0% | |
| TATATACCCTCAGCAGGAAC+GGG | + | chr5_1:2645372-2645391 | None:intergenic | 45.0% | |
| CTTGGCGACAAGATCAATGA+AGG | - | chr5_1:2646112-2646131 | Msa0710830:CDS | 45.0% | |
| TGGCGACAAGATCAATGAAG+GGG | - | chr5_1:2646114-2646133 | Msa0710830:CDS | 45.0% | |
| CGAATGAAGAAAGACGGAGA+CGG | - | chr5_1:2646266-2646285 | Msa0710830:CDS | 45.0% | |
| GAATGAAGAAAGACGGAGAC+GGG | - | chr5_1:2646267-2646286 | Msa0710830:CDS | 45.0% | |
| GTTTCATCATCCTCTTCTGG+AGG | + | chr5_1:2646316-2646335 | None:intergenic | 45.0% | |
| !! | AAAAAATCTAAAAATTATTT+AGG | - | chr5_1:2645660-2645679 | Msa0710830:intron | 5.0% |
| !! | AAAAATCTAAAAATTATTTA+GGG | - | chr5_1:2645661-2645680 | Msa0710830:intron | 5.0% |
| !! | AAAAAATCTAAAAATTATTT+AGG | - | chr5_1:2645660-2645679 | Msa0710830:intron | 5.0% |
| !! | AAAAATCTAAAAATTATTTA+GGG | - | chr5_1:2645661-2645680 | Msa0710830:intron | 5.0% |
| TTGGGCTTGACTCATTGGCA+GGG | + | chr5_1:2644918-2644937 | None:intergenic | 50.0% | |
| TTTGGGCTTGACTCATTGGC+AGG | + | chr5_1:2644919-2644938 | None:intergenic | 50.0% | |
| !! | TGGCTGGTGTGGTGTTGTTT+GGG | + | chr5_1:2644936-2644955 | None:intergenic | 50.0% |
| TGGCTGATCATGTTCAGCCA+AGG | + | chr5_1:2644974-2644993 | None:intergenic | 50.0% | |
| TCCTCAGTGTTTGTCACAGC+GGG | + | chr5_1:2644997-2645016 | None:intergenic | 50.0% | |
| ! | AACCTCTCTGAAAACACCGG+AGG | - | chr5_1:2645020-2645039 | Msa0710830:CDS | 50.0% |
| ! | TTCCTCCGGTGTTTTCAGAG+AGG | + | chr5_1:2645025-2645044 | None:intergenic | 50.0% |
| CATCATCAGTTAGTTCGGCC+AGG | + | chr5_1:2645050-2645069 | None:intergenic | 50.0% | |
| AGATGAACCGTCGGCAGTTA+GGG | + | chr5_1:2645145-2645164 | None:intergenic | 50.0% | |
| CTGATGGAGGGTCTTTCACT+TGG | + | chr5_1:2645221-2645240 | None:intergenic | 50.0% | |
| CAAGTGAAAGACCCTCCATC+AGG | - | chr5_1:2645219-2645238 | Msa0710830:intron | 50.0% | |
| ATGTTGGGGATCCTGATGGA+GGG | + | chr5_1:2645233-2645252 | None:intergenic | 50.0% | |
| GCAAACTCCCTCTTGCATTC+TGG | + | chr5_1:2645258-2645277 | None:intergenic | 50.0% | |
| CCACATGGAAAGCTGCGTTT+GGG | - | chr5_1:2645277-2645296 | Msa0710830:intron | 50.0% | |
| !! | CGGTGCTAAAAGTTGGTGGA+GGG | + | chr5_1:2645344-2645363 | None:intergenic | 50.0% |
| !! | ACGGTGCTAAAAGTTGGTGG+AGG | + | chr5_1:2645345-2645364 | None:intergenic | 50.0% |
| ! | GCAACGGTGCTAAAAGTTGG+TGG | + | chr5_1:2645348-2645367 | None:intergenic | 50.0% |
| ! | GGTGCAACGGTGCTAAAAGT+TGG | + | chr5_1:2645351-2645370 | None:intergenic | 50.0% |
| AGATCGATCCAATCAACCGC+AGG | - | chr5_1:2646175-2646194 | Msa0710830:CDS | 50.0% | |
| GATCGATCCAATCAACCGCA+GGG | - | chr5_1:2646176-2646195 | Msa0710830:CDS | 50.0% | |
| CGTCTTTCTTCATTCGCAGC+CGG | + | chr5_1:2646262-2646281 | None:intergenic | 50.0% | |
| CGGCTGCGAATGAAGAAAGA+CGG | - | chr5_1:2646260-2646279 | Msa0710830:CDS | 50.0% | |
| ! | TCATCATCCTCTTCTGGAGG+TGG | + | chr5_1:2646313-2646332 | None:intergenic | 50.0% |
| TTGGGCTTGACTCATTGGCA+GGG | + | chr5_1:2644918-2644937 | None:intergenic | 50.0% | |
| TTTGGGCTTGACTCATTGGC+AGG | + | chr5_1:2644919-2644938 | None:intergenic | 50.0% | |
| !! | TGGCTGGTGTGGTGTTGTTT+GGG | + | chr5_1:2644936-2644955 | None:intergenic | 50.0% |
| TGGCTGATCATGTTCAGCCA+AGG | + | chr5_1:2644974-2644993 | None:intergenic | 50.0% | |
| TCCTCAGTGTTTGTCACAGC+GGG | + | chr5_1:2644997-2645016 | None:intergenic | 50.0% | |
| ! | AACCTCTCTGAAAACACCGG+AGG | - | chr5_1:2645020-2645039 | Msa0710830:CDS | 50.0% |
| ! | TTCCTCCGGTGTTTTCAGAG+AGG | + | chr5_1:2645025-2645044 | None:intergenic | 50.0% |
| CATCATCAGTTAGTTCGGCC+AGG | + | chr5_1:2645050-2645069 | None:intergenic | 50.0% | |
| AGATGAACCGTCGGCAGTTA+GGG | + | chr5_1:2645145-2645164 | None:intergenic | 50.0% | |
| CTGATGGAGGGTCTTTCACT+TGG | + | chr5_1:2645221-2645240 | None:intergenic | 50.0% | |
| CAAGTGAAAGACCCTCCATC+AGG | - | chr5_1:2645219-2645238 | Msa0710830:intron | 50.0% | |
| ATGTTGGGGATCCTGATGGA+GGG | + | chr5_1:2645233-2645252 | None:intergenic | 50.0% | |
| GCAAACTCCCTCTTGCATTC+TGG | + | chr5_1:2645258-2645277 | None:intergenic | 50.0% | |
| CCACATGGAAAGCTGCGTTT+GGG | - | chr5_1:2645277-2645296 | Msa0710830:intron | 50.0% | |
| !! | CGGTGCTAAAAGTTGGTGGA+GGG | + | chr5_1:2645344-2645363 | None:intergenic | 50.0% |
| !! | ACGGTGCTAAAAGTTGGTGG+AGG | + | chr5_1:2645345-2645364 | None:intergenic | 50.0% |
| ! | GCAACGGTGCTAAAAGTTGG+TGG | + | chr5_1:2645348-2645367 | None:intergenic | 50.0% |
| ! | GGTGCAACGGTGCTAAAAGT+TGG | + | chr5_1:2645351-2645370 | None:intergenic | 50.0% |
| AGATCGATCCAATCAACCGC+AGG | - | chr5_1:2646175-2646194 | Msa0710830:CDS | 50.0% | |
| GATCGATCCAATCAACCGCA+GGG | - | chr5_1:2646176-2646195 | Msa0710830:CDS | 50.0% | |
| CGTCTTTCTTCATTCGCAGC+CGG | + | chr5_1:2646262-2646281 | None:intergenic | 50.0% | |
| CGGCTGCGAATGAAGAAAGA+CGG | - | chr5_1:2646260-2646279 | Msa0710830:CDS | 50.0% | |
| ! | TCATCATCCTCTTCTGGAGG+TGG | + | chr5_1:2646313-2646332 | None:intergenic | 50.0% |
| !! | GTGGCTGGTGTGGTGTTGTT+TGG | + | chr5_1:2644937-2644956 | None:intergenic | 55.0% |
| TTCAGCCAAGGTGCGTTGAG+GGG | + | chr5_1:2644962-2644981 | None:intergenic | 55.0% | |
| GTTCAGCCAAGGTGCGTTGA+GGG | + | chr5_1:2644963-2644982 | None:intergenic | 55.0% | |
| TGTTCAGCCAAGGTGCGTTG+AGG | + | chr5_1:2644964-2644983 | None:intergenic | 55.0% | |
| TCAGTGTTTGTCACAGCGGG+TGG | + | chr5_1:2644994-2645013 | None:intergenic | 55.0% | |
| ACCCGCTGTGACAAACACTG+AGG | - | chr5_1:2644993-2645012 | Msa0710830:CDS | 55.0% | |
| GAAAACACCGGAGGAAGTCC+TGG | - | chr5_1:2645029-2645048 | Msa0710830:CDS | 55.0% | |
| !!! | CGATGGGGCTTTTAGGACGA+TGG | - | chr5_1:2645113-2645132 | Msa0710830:CDS | 55.0% |
| GTTATCGCCCTAACTGCCGA+CGG | - | chr5_1:2645135-2645154 | Msa0710830:CDS | 55.0% | |
| CAGATGAACCGTCGGCAGTT+AGG | + | chr5_1:2645146-2645165 | None:intergenic | 55.0% | |
| CATGTTGGGGATCCTGATGG+AGG | + | chr5_1:2645234-2645253 | None:intergenic | 55.0% | |
| GGACATGTTGGGGATCCTGA+TGG | + | chr5_1:2645237-2645256 | None:intergenic | 55.0% | |
| GCAAGAGGGAGTTTGCCACA+TGG | - | chr5_1:2645262-2645281 | Msa0710830:intron | 55.0% | |
| GCCACATGGAAAGCTGCGTT+TGG | - | chr5_1:2645276-2645295 | Msa0710830:intron | 55.0% | |
| CCCAAACGCAGCTTTCCATG+TGG | + | chr5_1:2645280-2645299 | None:intergenic | 55.0% | |
| AGCATCCAGAGCGTGCTCAT+CGG | - | chr5_1:2645310-2645329 | Msa0710830:intron | 55.0% | |
| ATGACCACTACCACCTGCAG+AGG | + | chr5_1:2646203-2646222 | None:intergenic | 55.0% | |
| !! | GTGGCTGGTGTGGTGTTGTT+TGG | + | chr5_1:2644937-2644956 | None:intergenic | 55.0% |
| TTCAGCCAAGGTGCGTTGAG+GGG | + | chr5_1:2644962-2644981 | None:intergenic | 55.0% | |
| GTTCAGCCAAGGTGCGTTGA+GGG | + | chr5_1:2644963-2644982 | None:intergenic | 55.0% | |
| TGTTCAGCCAAGGTGCGTTG+AGG | + | chr5_1:2644964-2644983 | None:intergenic | 55.0% | |
| TCAGTGTTTGTCACAGCGGG+TGG | + | chr5_1:2644994-2645013 | None:intergenic | 55.0% | |
| ACCCGCTGTGACAAACACTG+AGG | - | chr5_1:2644993-2645012 | Msa0710830:CDS | 55.0% | |
| GAAAACACCGGAGGAAGTCC+TGG | - | chr5_1:2645029-2645048 | Msa0710830:CDS | 55.0% | |
| !!! | CGATGGGGCTTTTAGGACGA+TGG | - | chr5_1:2645113-2645132 | Msa0710830:CDS | 55.0% |
| GTTATCGCCCTAACTGCCGA+CGG | - | chr5_1:2645135-2645154 | Msa0710830:CDS | 55.0% | |
| CAGATGAACCGTCGGCAGTT+AGG | + | chr5_1:2645146-2645165 | None:intergenic | 55.0% | |
| CATGTTGGGGATCCTGATGG+AGG | + | chr5_1:2645234-2645253 | None:intergenic | 55.0% | |
| GGACATGTTGGGGATCCTGA+TGG | + | chr5_1:2645237-2645256 | None:intergenic | 55.0% | |
| GCAAGAGGGAGTTTGCCACA+TGG | - | chr5_1:2645262-2645281 | Msa0710830:intron | 55.0% | |
| GCCACATGGAAAGCTGCGTT+TGG | - | chr5_1:2645276-2645295 | Msa0710830:intron | 55.0% | |
| CCCAAACGCAGCTTTCCATG+TGG | + | chr5_1:2645280-2645299 | None:intergenic | 55.0% | |
| AGCATCCAGAGCGTGCTCAT+CGG | - | chr5_1:2645310-2645329 | Msa0710830:intron | 55.0% | |
| ATGACCACTACCACCTGCAG+AGG | + | chr5_1:2646203-2646222 | None:intergenic | 55.0% | |
| TTGAGGGGAAGTGGCTGGTG+TGG | + | chr5_1:2644947-2644966 | None:intergenic | 60.0% | |
| CAAGGTGCGTTGAGGGGAAG+TGG | + | chr5_1:2644956-2644975 | None:intergenic | 60.0% | |
| CACTTCCCCTCAACGCACCT+TGG | - | chr5_1:2644954-2644973 | Msa0710830:CDS | 60.0% | |
| AGTTCGGCCAGGACTTCCTC+CGG | + | chr5_1:2645039-2645058 | None:intergenic | 60.0% | |
| GCATCCAGAGCGTGCTCATC+GGG | - | chr5_1:2645311-2645330 | Msa0710830:intron | 60.0% | |
| CATCCAGAGCGTGCTCATCG+GGG | - | chr5_1:2645312-2645331 | Msa0710830:intron | 60.0% | |
| ATCCAGAGCGTGCTCATCGG+GGG | - | chr5_1:2645313-2645332 | Msa0710830:intron | 60.0% | |
| CTCAGCAGGAACGGGTGCAA+CGG | + | chr5_1:2645364-2645383 | None:intergenic | 60.0% | |
| GTTGCACCCGTTCCTGCTGA+GGG | - | chr5_1:2645363-2645382 | Msa0710830:intron | 60.0% | |
| CAGAGGACCCTGCGGTTGAT+TGG | + | chr5_1:2646186-2646205 | None:intergenic | 60.0% | |
| TCTTCATTCGCAGCCGGTGC+AGG | + | chr5_1:2646256-2646275 | None:intergenic | 60.0% | |
| CGAGTTGCCACCTCCAGAAG+AGG | - | chr5_1:2646303-2646322 | Msa0710830:CDS | 60.0% | |
| TTGAGGGGAAGTGGCTGGTG+TGG | + | chr5_1:2644947-2644966 | None:intergenic | 60.0% | |
| CAAGGTGCGTTGAGGGGAAG+TGG | + | chr5_1:2644956-2644975 | None:intergenic | 60.0% | |
| CACTTCCCCTCAACGCACCT+TGG | - | chr5_1:2644954-2644973 | Msa0710830:CDS | 60.0% | |
| AGTTCGGCCAGGACTTCCTC+CGG | + | chr5_1:2645039-2645058 | None:intergenic | 60.0% | |
| GCATCCAGAGCGTGCTCATC+GGG | - | chr5_1:2645311-2645330 | Msa0710830:intron | 60.0% | |
| CATCCAGAGCGTGCTCATCG+GGG | - | chr5_1:2645312-2645331 | Msa0710830:intron | 60.0% | |
| ATCCAGAGCGTGCTCATCGG+GGG | - | chr5_1:2645313-2645332 | Msa0710830:intron | 60.0% | |
| CTCAGCAGGAACGGGTGCAA+CGG | + | chr5_1:2645364-2645383 | None:intergenic | 60.0% | |
| GTTGCACCCGTTCCTGCTGA+GGG | - | chr5_1:2645363-2645382 | Msa0710830:intron | 60.0% | |
| CAGAGGACCCTGCGGTTGAT+TGG | + | chr5_1:2646186-2646205 | None:intergenic | 60.0% | |
| TCTTCATTCGCAGCCGGTGC+AGG | + | chr5_1:2646256-2646275 | None:intergenic | 60.0% | |
| CGAGTTGCCACCTCCAGAAG+AGG | - | chr5_1:2646303-2646322 | Msa0710830:CDS | 60.0% | |
| GTGCGTTGAGGGGAAGTGGC+TGG | + | chr5_1:2644952-2644971 | None:intergenic | 65.0% | |
| AACCCCCGATGAGCACGCTC+TGG | + | chr5_1:2645318-2645337 | None:intergenic | 65.0% | |
| CGTTGCACCCGTTCCTGCTG+AGG | - | chr5_1:2645362-2645381 | Msa0710830:intron | 65.0% | |
| TCAACCGCAGGGTCCTCTGC+AGG | - | chr5_1:2646187-2646206 | Msa0710830:CDS | 65.0% | |
| ACCACCTGCAGAGGACCCTG+CGG | + | chr5_1:2646194-2646213 | None:intergenic | 65.0% | |
| GGGTCCTCTGCAGGTGGTAG+TGG | - | chr5_1:2646196-2646215 | Msa0710830:CDS | 65.0% | |
| !! | GTGCAGGTGCAGGTGCTGCT+TGG | + | chr5_1:2646240-2646259 | None:intergenic | 65.0% |
| AGCAGCACCTGCACCTGCAC+CGG | - | chr5_1:2646240-2646259 | Msa0710830:CDS | 65.0% | |
| GTGCGTTGAGGGGAAGTGGC+TGG | + | chr5_1:2644952-2644971 | None:intergenic | 65.0% | |
| AACCCCCGATGAGCACGCTC+TGG | + | chr5_1:2645318-2645337 | None:intergenic | 65.0% | |
| CGTTGCACCCGTTCCTGCTG+AGG | - | chr5_1:2645362-2645381 | Msa0710830:intron | 65.0% | |
| TCAACCGCAGGGTCCTCTGC+AGG | - | chr5_1:2646187-2646206 | Msa0710830:CDS | 65.0% | |
| ACCACCTGCAGAGGACCCTG+CGG | + | chr5_1:2646194-2646213 | None:intergenic | 65.0% | |
| GGGTCCTCTGCAGGTGGTAG+TGG | - | chr5_1:2646196-2646215 | Msa0710830:CDS | 65.0% | |
| !! | GTGCAGGTGCAGGTGCTGCT+TGG | + | chr5_1:2646240-2646259 | None:intergenic | 65.0% |
| AGCAGCACCTGCACCTGCAC+CGG | - | chr5_1:2646240-2646259 | Msa0710830:CDS | 65.0% | |
| ACCGCAGGGTCCTCTGCAGG+TGG | - | chr5_1:2646190-2646209 | Msa0710830:CDS | 70.0% | |
| TTCGCAGCCGGTGCAGGTGC+AGG | + | chr5_1:2646250-2646269 | None:intergenic | 70.0% | |
| ACCGCAGGGTCCTCTGCAGG+TGG | - | chr5_1:2646190-2646209 | Msa0710830:CDS | 70.0% | |
| TTCGCAGCCGGTGCAGGTGC+AGG | + | chr5_1:2646250-2646269 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 2644904 | 2646357 | 2644904 | ID=Msa0710830;Name=Msa0710830 |
| chr5_1 | mRNA | 2644904 | 2646357 | 2644904 | ID=Msa0710830-mRNA-1;Parent=Msa0710830;Name=Msa0710830-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0|0|1|1|1|2|0|244 |
| chr5_1 | exon | 2645877 | 2646357 | 2645877 | ID=Msa0710830-mRNA-1:exon:900;Parent=Msa0710830-mRNA-1 |
| chr5_1 | exon | 2644904 | 2645157 | 2644904 | ID=Msa0710830-mRNA-1:exon:899;Parent=Msa0710830-mRNA-1 |
| chr5_1 | CDS | 2645877 | 2646357 | 2645877 | ID=Msa0710830-mRNA-1:cds;Parent=Msa0710830-mRNA-1 |
| chr5_1 | CDS | 2644904 | 2645157 | 2644904 | ID=Msa0710830-mRNA-1:cds;Parent=Msa0710830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
