Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0710860 | AES95288.1 | 59.218 | 179 | 32 | 4 | 6 | 158 | 4 | 167 | 1.86e-56 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0710860 | G7K021 | 59.218 | 179 | 32 | 4 | 6 | 158 | 4 | 167 | 8.87e-57 | 185 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0710860 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0710860 | MtrunA17_Chr5g0406781 | 72.800 | 125 | 17 | 3 | 6 | 126 | 4 | 115 | 3.75e-56 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 72 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAGTTGGGTTGGTTTCTT+TGG | 0.162115 | 5_1:+2688852 | None:intergenic |
| TTCTTGGAAGGGTTAGGTTT+AGG | 0.193850 | 5_1:+2688931 | None:intergenic |
| TCTTGGAAGGGTTAGGTTTA+GGG | 0.252279 | 5_1:+2688932 | None:intergenic |
| GTAGTTGGGTTGGTTTCTTT+GGG | 0.266039 | 5_1:+2688853 | None:intergenic |
| AGGGGACTTGTTGGTGGTGG+GGG | 0.282219 | 5_1:+2688903 | None:intergenic |
| TTGAGGGGACTTGTTGGTGG+TGG | 0.297192 | 5_1:+2688900 | None:intergenic |
| GGGCTTCTTGATCGTCCTCT+TGG | 0.324765 | 5_1:+2688032 | None:intergenic |
| TGCTTATCAGTTGTATCGGC+TGG | 0.335441 | 5_1:+2688011 | None:intergenic |
| TAGTTGGGTTGGTTTCTTTG+GGG | 0.344689 | 5_1:+2688854 | None:intergenic |
| TGAGGGGACTTGTTGGTGGT+GGG | 0.348447 | 5_1:+2688901 | None:intergenic |
| GTGGAATTCTTGGAAGGGTT+AGG | 0.374308 | 5_1:+2688925 | None:intergenic |
| GGCTTCTTGATCGTCCTCTT+GGG | 0.380085 | 5_1:+2688033 | None:intergenic |
| GAGGGGACTTGTTGGTGGTG+GGG | 0.390260 | 5_1:+2688902 | None:intergenic |
| AAAGAACTCTGAAGGGTAGT+TGG | 0.402173 | 5_1:+2688838 | None:intergenic |
| TCAGAGTCCTCTATCTCTAT+TGG | 0.410192 | 5_1:+2688126 | None:intergenic |
| CTCTTGGGCCTTCCTTCCTC+TGG | 0.410975 | 5_1:+2688048 | None:intergenic |
| AGGGTCTTGAGGGGACTTGT+TGG | 0.426514 | 5_1:+2688894 | None:intergenic |
| AAGAACTCTGAAGGGTAGTT+GGG | 0.428150 | 5_1:+2688839 | None:intergenic |
| TACAATGTCAAGTCAGGAAG+AGG | 0.434728 | 5_1:-2688103 | Msa0710860:CDS |
| TCTTTAAGAGCTCGTGAGAA+TGG | 0.434908 | 5_1:-2688820 | Msa0710860:CDS |
| ACCTCAACCTGATCAATATG+AGG | 0.437745 | 5_1:-2688587 | Msa0710860:CDS |
| GTCTTGAGGGGACTTGTTGG+TGG | 0.443401 | 5_1:+2688897 | None:intergenic |
| AGGTGGGGTGGCTGTTGATG+TGG | 0.445640 | 5_1:+2688606 | None:intergenic |
| CATCAGAGGGAGGGTCTTGA+GGG | 0.445658 | 5_1:+2688884 | None:intergenic |
| CATGGTTATTCAGCACCTCC+TGG | 0.446537 | 5_1:-2688646 | Msa0710860:CDS |
| CAGTGTTACTGTTTGCACCT+TGG | 0.447615 | 5_1:+2688073 | None:intergenic |
| CCCTCATATTGATCAGGTTG+AGG | 0.453934 | 5_1:+2688586 | None:intergenic |
| GCAAACATGTGTTTCCCACT+TGG | 0.463748 | 5_1:-2688717 | Msa0710860:CDS |
| CTTTAAGAGCTCGTGAGAAT+GGG | 0.465502 | 5_1:-2688819 | Msa0710860:CDS |
| AAGTGATGGTCAAGCTATGA+AGG | 0.473835 | 5_1:-2688770 | Msa0710860:CDS |
| AAGCCAGCCAATAGAGATAG+AGG | 0.474391 | 5_1:-2688133 | Msa0710860:CDS |
| GCTGTTGATGTGGAAGGAAG+TGG | 0.478632 | 5_1:+2688616 | None:intergenic |
| CTCTGATACAATGTCAAGTC+AGG | 0.478904 | 5_1:-2688109 | Msa0710860:CDS |
| CATATTGATCAGGTTGAGGT+GGG | 0.500892 | 5_1:+2688590 | None:intergenic |
| AGTCCTCTATCTCTATTGGC+TGG | 0.503791 | 5_1:+2688130 | None:intergenic |
| TCATCAGAGGGAGGGTCTTG+AGG | 0.508193 | 5_1:+2688883 | None:intergenic |
| ACTCTGAAGGGTAGTTGGGT+TGG | 0.513668 | 5_1:+2688843 | None:intergenic |
| AGTTGGGTTGGTTTCTTTGG+GGG | 0.515909 | 5_1:+2688855 | None:intergenic |
| AGCTCGTGAGAATGGGAAGC+TGG | 0.517710 | 5_1:-2688812 | Msa0710860:CDS |
| CAAACATGTGTTTCCCACTT+GGG | 0.531651 | 5_1:-2688716 | Msa0710860:CDS |
| GCTTATCAGTTGTATCGGCT+GGG | 0.531837 | 5_1:+2688012 | None:intergenic |
| TTGATCAGGTTGAGGTGGGG+TGG | 0.544768 | 5_1:+2688594 | None:intergenic |
| TCATATTGATCAGGTTGAGG+TGG | 0.558741 | 5_1:+2688589 | None:intergenic |
| GAGCTGCTTATCAGTTGTAT+CGG | 0.563493 | 5_1:+2688007 | None:intergenic |
| GAGCTCTTAAAGAACTCTGA+AGG | 0.564348 | 5_1:+2688830 | None:intergenic |
| ACACTGGACCAGAGGAAGGA+AGG | 0.583767 | 5_1:-2688056 | Msa0710860:CDS |
| GGGGTGGCTGTTGATGTGGA+AGG | 0.586960 | 5_1:+2688610 | None:intergenic |
| TATATTTGTTGTCATCCCCA+TGG | 0.588326 | 5_1:-2688664 | Msa0710860:CDS |
| CAAGGTGCAAACAGTAACAC+TGG | 0.594274 | 5_1:-2688072 | Msa0710860:CDS |
| ATATTGATCAGGTTGAGGTG+GGG | 0.595131 | 5_1:+2688591 | None:intergenic |
| AGGAGGTGCTGAATAACCAT+GGG | 0.595499 | 5_1:+2688648 | None:intergenic |
| CAGAGGAAGGAAGGCCCAAG+AGG | 0.596615 | 5_1:-2688047 | Msa0710860:CDS |
| CAGGAAGAGGGAAGGAACCA+AGG | 0.600368 | 5_1:-2688090 | Msa0710860:CDS |
| AGTGATGGTCAAGCTATGAA+GGG | 0.603559 | 5_1:-2688769 | Msa0710860:CDS |
| AATGGGAAGCTGGCAGCTGA+TGG | 0.610197 | 5_1:-2688802 | Msa0710860:CDS |
| GGGGATTCATCATCAGAGGG+AGG | 0.610326 | 5_1:+2688874 | None:intergenic |
| CAGGAGGTGCTGAATAACCA+TGG | 0.613000 | 5_1:+2688647 | None:intergenic |
| AAGCTGGCAGCTGATGGCGA+AGG | 0.613924 | 5_1:-2688796 | Msa0710860:CDS |
| AGTAACACTGGACCAGAGGA+AGG | 0.621380 | 5_1:-2688060 | Msa0710860:CDS |
| AGCTCTTAAAGAACTCTGAA+GGG | 0.626255 | 5_1:+2688831 | None:intergenic |
| CTTCATCAAAGTAGCCCAAG+TGG | 0.635469 | 5_1:+2688702 | None:intergenic |
| ATGGTCAAGCTATGAAGGGG+AGG | 0.636182 | 5_1:-2688765 | Msa0710860:CDS |
| ACAATGTCAAGTCAGGAAGA+GGG | 0.642713 | 5_1:-2688102 | Msa0710860:CDS |
| CCTCAACCTGATCAATATGA+GGG | 0.650750 | 5_1:-2688586 | Msa0710860:intron |
| ATCAGAGGGAGGGTCTTGAG+GGG | 0.650850 | 5_1:+2688885 | None:intergenic |
| TTCATCAAAGTAGCCCAAGT+GGG | 0.657037 | 5_1:+2688703 | None:intergenic |
| TGTCAAGTCAGGAAGAGGGA+AGG | 0.657401 | 5_1:-2688098 | Msa0710860:CDS |
| GATGGCGAAGGAGTAAGTGA+TGG | 0.658846 | 5_1:-2688784 | Msa0710860:CDS |
| GTGATGGTCAAGCTATGAAG+GGG | 0.659294 | 5_1:-2688768 | Msa0710860:CDS |
| GGGATTCATCATCAGAGGGA+GGG | 0.659890 | 5_1:+2688875 | None:intergenic |
| AAACAGTAACACTGGACCAG+AGG | 0.661812 | 5_1:-2688064 | Msa0710860:CDS |
| GGAGGTGCTGAATAACCATG+GGG | 0.770989 | 5_1:+2688649 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCACACTATAATTTTT+AGG | - | chr5_1:2688447-2688466 | Msa0710860:intron | 15.0% |
| !! | AACATTAAATAATTGAATCT+TGG | + | chr5_1:2688517-2688536 | None:intergenic | 15.0% |
| !!! | TTTTTCACACTATAATTTTT+AGG | - | chr5_1:2688447-2688466 | Msa0710860:intron | 15.0% |
| !! | AACATTAAATAATTGAATCT+TGG | + | chr5_1:2688517-2688536 | None:intergenic | 15.0% |
| !!! | ACAATAAATAGTTTTGAGAT+AGG | + | chr5_1:2688416-2688435 | None:intergenic | 20.0% |
| !!! | AATGTTTTTCTTTTGTTACT+AGG | - | chr5_1:2688792-2688811 | Msa0710860:CDS | 20.0% |
| !!! | ACAATAAATAGTTTTGAGAT+AGG | + | chr5_1:2688416-2688435 | None:intergenic | 20.0% |
| !!! | AATGTTTTTCTTTTGTTACT+AGG | - | chr5_1:2688792-2688811 | Msa0710860:CDS | 20.0% |
| !!! | TAGTTTTGAGATAGGAAATT+AGG | + | chr5_1:2688408-2688427 | None:intergenic | 25.0% |
| ! | CATATATATGTTTGTGTCTA+TGG | + | chr5_1:2688616-2688635 | None:intergenic | 25.0% |
| !! | ATTTTATGAGATCTAAGTCA+TGG | - | chr5_1:2688655-2688674 | Msa0710860:CDS | 25.0% |
| !!! | TAGTTTTGAGATAGGAAATT+AGG | + | chr5_1:2688408-2688427 | None:intergenic | 25.0% |
| ! | CATATATATGTTTGTGTCTA+TGG | + | chr5_1:2688616-2688635 | None:intergenic | 25.0% |
| !! | ATTTTATGAGATCTAAGTCA+TGG | - | chr5_1:2688655-2688674 | Msa0710860:CDS | 25.0% |
| TATATAGCCAATAAAACCCT+AGG | + | chr5_1:2688488-2688507 | None:intergenic | 30.0% | |
| TATATAGCCAATAAAACCCT+AGG | + | chr5_1:2688488-2688507 | None:intergenic | 30.0% | |
| AGCTCTTAAAGAACTCTGAA+GGG | + | chr5_1:2688129-2688148 | None:intergenic | 35.0% | |
| !! | TATATTTGTTGTCATCCCCA+TGG | - | chr5_1:2688293-2688312 | Msa0710860:intron | 35.0% |
| ! | GTTTTACCCTCATATTGATC+AGG | + | chr5_1:2688380-2688399 | None:intergenic | 35.0% |
| TTATGAGATCTAAGTCATGG+AGG | - | chr5_1:2688658-2688677 | Msa0710860:CDS | 35.0% | |
| AGCTCTTAAAGAACTCTGAA+GGG | + | chr5_1:2688129-2688148 | None:intergenic | 35.0% | |
| !! | TATATTTGTTGTCATCCCCA+TGG | - | chr5_1:2688293-2688312 | Msa0710860:intron | 35.0% |
| ! | GTTTTACCCTCATATTGATC+AGG | + | chr5_1:2688380-2688399 | None:intergenic | 35.0% |
| TTATGAGATCTAAGTCATGG+AGG | - | chr5_1:2688658-2688677 | Msa0710860:CDS | 35.0% | |
| TCTTGGAAGGGTTAGGTTTA+GGG | + | chr5_1:2688028-2688047 | None:intergenic | 40.0% | |
| TTCTTGGAAGGGTTAGGTTT+AGG | + | chr5_1:2688029-2688048 | None:intergenic | 40.0% | |
| !! | TAGTTGGGTTGGTTTCTTTG+GGG | + | chr5_1:2688106-2688125 | None:intergenic | 40.0% |
| !! | GTAGTTGGGTTGGTTTCTTT+GGG | + | chr5_1:2688107-2688126 | None:intergenic | 40.0% |
| ! | AAGAACTCTGAAGGGTAGTT+GGG | + | chr5_1:2688121-2688140 | None:intergenic | 40.0% |
| ! | AAAGAACTCTGAAGGGTAGT+TGG | + | chr5_1:2688122-2688141 | None:intergenic | 40.0% |
| GAGCTCTTAAAGAACTCTGA+AGG | + | chr5_1:2688130-2688149 | None:intergenic | 40.0% | |
| ! | TCTTTAAGAGCTCGTGAGAA+TGG | - | chr5_1:2688137-2688156 | Msa0710860:CDS | 40.0% |
| ! | CTTTAAGAGCTCGTGAGAAT+GGG | - | chr5_1:2688138-2688157 | Msa0710860:CDS | 40.0% |
| AAGTGATGGTCAAGCTATGA+AGG | - | chr5_1:2688187-2688206 | Msa0710860:intron | 40.0% | |
| AGTGATGGTCAAGCTATGAA+GGG | - | chr5_1:2688188-2688207 | Msa0710860:intron | 40.0% | |
| CAAACATGTGTTTCCCACTT+GGG | - | chr5_1:2688241-2688260 | Msa0710860:intron | 40.0% | |
| TTCATCAAAGTAGCCCAAGT+GGG | + | chr5_1:2688257-2688276 | None:intergenic | 40.0% | |
| !! | ATATTGATCAGGTTGAGGTG+GGG | + | chr5_1:2688369-2688388 | None:intergenic | 40.0% |
| !! | CATATTGATCAGGTTGAGGT+GGG | + | chr5_1:2688370-2688389 | None:intergenic | 40.0% |
| !! | TCATATTGATCAGGTTGAGG+TGG | + | chr5_1:2688371-2688390 | None:intergenic | 40.0% |
| ACCTCAACCTGATCAATATG+AGG | - | chr5_1:2688370-2688389 | Msa0710860:intron | 40.0% | |
| CCTCAACCTGATCAATATGA+GGG | - | chr5_1:2688371-2688390 | Msa0710860:intron | 40.0% | |
| CCAATAAAACCCTAGGTCAT+TGG | + | chr5_1:2688481-2688500 | None:intergenic | 40.0% | |
| !! | CCAATGACCTAGGGTTTTAT+TGG | - | chr5_1:2688478-2688497 | Msa0710860:intron | 40.0% |
| TCAGAGTCCTCTATCTCTAT+TGG | + | chr5_1:2688834-2688853 | None:intergenic | 40.0% | |
| CTCTGATACAATGTCAAGTC+AGG | - | chr5_1:2688848-2688867 | Msa0710860:CDS | 40.0% | |
| TACAATGTCAAGTCAGGAAG+AGG | - | chr5_1:2688854-2688873 | Msa0710860:CDS | 40.0% | |
| ACAATGTCAAGTCAGGAAGA+GGG | - | chr5_1:2688855-2688874 | Msa0710860:CDS | 40.0% | |
| TCTTGGAAGGGTTAGGTTTA+GGG | + | chr5_1:2688028-2688047 | None:intergenic | 40.0% | |
| TTCTTGGAAGGGTTAGGTTT+AGG | + | chr5_1:2688029-2688048 | None:intergenic | 40.0% | |
| !! | TAGTTGGGTTGGTTTCTTTG+GGG | + | chr5_1:2688106-2688125 | None:intergenic | 40.0% |
| !! | GTAGTTGGGTTGGTTTCTTT+GGG | + | chr5_1:2688107-2688126 | None:intergenic | 40.0% |
| ! | AAGAACTCTGAAGGGTAGTT+GGG | + | chr5_1:2688121-2688140 | None:intergenic | 40.0% |
| ! | AAAGAACTCTGAAGGGTAGT+TGG | + | chr5_1:2688122-2688141 | None:intergenic | 40.0% |
| GAGCTCTTAAAGAACTCTGA+AGG | + | chr5_1:2688130-2688149 | None:intergenic | 40.0% | |
| ! | TCTTTAAGAGCTCGTGAGAA+TGG | - | chr5_1:2688137-2688156 | Msa0710860:CDS | 40.0% |
| ! | CTTTAAGAGCTCGTGAGAAT+GGG | - | chr5_1:2688138-2688157 | Msa0710860:CDS | 40.0% |
| AAGTGATGGTCAAGCTATGA+AGG | - | chr5_1:2688187-2688206 | Msa0710860:intron | 40.0% | |
| AGTGATGGTCAAGCTATGAA+GGG | - | chr5_1:2688188-2688207 | Msa0710860:intron | 40.0% | |
| CAAACATGTGTTTCCCACTT+GGG | - | chr5_1:2688241-2688260 | Msa0710860:intron | 40.0% | |
| TTCATCAAAGTAGCCCAAGT+GGG | + | chr5_1:2688257-2688276 | None:intergenic | 40.0% | |
| !! | ATATTGATCAGGTTGAGGTG+GGG | + | chr5_1:2688369-2688388 | None:intergenic | 40.0% |
| !! | CATATTGATCAGGTTGAGGT+GGG | + | chr5_1:2688370-2688389 | None:intergenic | 40.0% |
| !! | TCATATTGATCAGGTTGAGG+TGG | + | chr5_1:2688371-2688390 | None:intergenic | 40.0% |
| ACCTCAACCTGATCAATATG+AGG | - | chr5_1:2688370-2688389 | Msa0710860:intron | 40.0% | |
| CCTCAACCTGATCAATATGA+GGG | - | chr5_1:2688371-2688390 | Msa0710860:intron | 40.0% | |
| CCAATAAAACCCTAGGTCAT+TGG | + | chr5_1:2688481-2688500 | None:intergenic | 40.0% | |
| !! | CCAATGACCTAGGGTTTTAT+TGG | - | chr5_1:2688478-2688497 | Msa0710860:intron | 40.0% |
| TCAGAGTCCTCTATCTCTAT+TGG | + | chr5_1:2688834-2688853 | None:intergenic | 40.0% | |
| CTCTGATACAATGTCAAGTC+AGG | - | chr5_1:2688848-2688867 | Msa0710860:CDS | 40.0% | |
| TACAATGTCAAGTCAGGAAG+AGG | - | chr5_1:2688854-2688873 | Msa0710860:CDS | 40.0% | |
| ACAATGTCAAGTCAGGAAGA+GGG | - | chr5_1:2688855-2688874 | Msa0710860:CDS | 40.0% | |
| GTGGAATTCTTGGAAGGGTT+AGG | + | chr5_1:2688035-2688054 | None:intergenic | 45.0% | |
| TTGGGGGATTCATCATCAGA+GGG | + | chr5_1:2688089-2688108 | None:intergenic | 45.0% | |
| TTTGGGGGATTCATCATCAG+AGG | + | chr5_1:2688090-2688109 | None:intergenic | 45.0% | |
| !! | AGTTGGGTTGGTTTCTTTGG+GGG | + | chr5_1:2688105-2688124 | None:intergenic | 45.0% |
| !! | GGTAGTTGGGTTGGTTTCTT+TGG | + | chr5_1:2688108-2688127 | None:intergenic | 45.0% |
| GTGATGGTCAAGCTATGAAG+GGG | - | chr5_1:2688189-2688208 | Msa0710860:intron | 45.0% | |
| GCAAACATGTGTTTCCCACT+TGG | - | chr5_1:2688240-2688259 | Msa0710860:intron | 45.0% | |
| CTTCATCAAAGTAGCCCAAG+TGG | + | chr5_1:2688258-2688277 | None:intergenic | 45.0% | |
| !! | AGGAGGTGCTGAATAACCAT+GGG | + | chr5_1:2688312-2688331 | None:intergenic | 45.0% |
| GAAGGAAGTGGAGAAAAACC+AGG | + | chr5_1:2688332-2688351 | None:intergenic | 45.0% | |
| ! | CCCTCATATTGATCAGGTTG+AGG | + | chr5_1:2688374-2688393 | None:intergenic | 45.0% |
| GTCAACACTCCAATGACCTA+GGG | - | chr5_1:2688469-2688488 | Msa0710860:intron | 45.0% | |
| AAGCCAGCCAATAGAGATAG+AGG | - | chr5_1:2688824-2688843 | Msa0710860:CDS | 45.0% | |
| AGTCCTCTATCTCTATTGGC+TGG | + | chr5_1:2688830-2688849 | None:intergenic | 45.0% | |
| ! | CAGTGTTACTGTTTGCACCT+TGG | + | chr5_1:2688887-2688906 | None:intergenic | 45.0% |
| CAAGGTGCAAACAGTAACAC+TGG | - | chr5_1:2688885-2688904 | Msa0710860:CDS | 45.0% | |
| AAACAGTAACACTGGACCAG+AGG | - | chr5_1:2688893-2688912 | Msa0710860:CDS | 45.0% | |
| GTGGAATTCTTGGAAGGGTT+AGG | + | chr5_1:2688035-2688054 | None:intergenic | 45.0% | |
| TTGGGGGATTCATCATCAGA+GGG | + | chr5_1:2688089-2688108 | None:intergenic | 45.0% | |
| TTTGGGGGATTCATCATCAG+AGG | + | chr5_1:2688090-2688109 | None:intergenic | 45.0% | |
| !! | AGTTGGGTTGGTTTCTTTGG+GGG | + | chr5_1:2688105-2688124 | None:intergenic | 45.0% |
| !! | GGTAGTTGGGTTGGTTTCTT+TGG | + | chr5_1:2688108-2688127 | None:intergenic | 45.0% |
| GTGATGGTCAAGCTATGAAG+GGG | - | chr5_1:2688189-2688208 | Msa0710860:intron | 45.0% | |
| GCAAACATGTGTTTCCCACT+TGG | - | chr5_1:2688240-2688259 | Msa0710860:intron | 45.0% | |
| CTTCATCAAAGTAGCCCAAG+TGG | + | chr5_1:2688258-2688277 | None:intergenic | 45.0% | |
| !! | AGGAGGTGCTGAATAACCAT+GGG | + | chr5_1:2688312-2688331 | None:intergenic | 45.0% |
| GAAGGAAGTGGAGAAAAACC+AGG | + | chr5_1:2688332-2688351 | None:intergenic | 45.0% | |
| ! | CCCTCATATTGATCAGGTTG+AGG | + | chr5_1:2688374-2688393 | None:intergenic | 45.0% |
| GTCAACACTCCAATGACCTA+GGG | - | chr5_1:2688469-2688488 | Msa0710860:intron | 45.0% | |
| AAGCCAGCCAATAGAGATAG+AGG | - | chr5_1:2688824-2688843 | Msa0710860:CDS | 45.0% | |
| AGTCCTCTATCTCTATTGGC+TGG | + | chr5_1:2688830-2688849 | None:intergenic | 45.0% | |
| ! | CAGTGTTACTGTTTGCACCT+TGG | + | chr5_1:2688887-2688906 | None:intergenic | 45.0% |
| CAAGGTGCAAACAGTAACAC+TGG | - | chr5_1:2688885-2688904 | Msa0710860:CDS | 45.0% | |
| AAACAGTAACACTGGACCAG+AGG | - | chr5_1:2688893-2688912 | Msa0710860:CDS | 45.0% | |
| !!! | TAATTTTTTTTATAACTTAT+TGG | - | chr5_1:2688697-2688716 | Msa0710860:CDS | 5.0% |
| !!! | TAATTTTTTTTATAACTTAT+TGG | - | chr5_1:2688697-2688716 | Msa0710860:CDS | 5.0% |
| TGGGGGTGGAATTCTTGGAA+GGG | + | chr5_1:2688040-2688059 | None:intergenic | 50.0% | |
| GGGATTCATCATCAGAGGGA+GGG | + | chr5_1:2688085-2688104 | None:intergenic | 50.0% | |
| ! | ACTCTGAAGGGTAGTTGGGT+TGG | + | chr5_1:2688117-2688136 | None:intergenic | 50.0% |
| GATGGCGAAGGAGTAAGTGA+TGG | - | chr5_1:2688173-2688192 | Msa0710860:intron | 50.0% | |
| ATGGTCAAGCTATGAAGGGG+AGG | - | chr5_1:2688192-2688211 | Msa0710860:intron | 50.0% | |
| !! | GGAGGTGCTGAATAACCATG+GGG | + | chr5_1:2688311-2688330 | None:intergenic | 50.0% |
| !! | CAGGAGGTGCTGAATAACCA+TGG | + | chr5_1:2688313-2688332 | None:intergenic | 50.0% |
| CATGGTTATTCAGCACCTCC+TGG | - | chr5_1:2688311-2688330 | Msa0710860:intron | 50.0% | |
| GGAAGTGGAGAAAAACCAGG+AGG | + | chr5_1:2688329-2688348 | None:intergenic | 50.0% | |
| GCTGTTGATGTGGAAGGAAG+TGG | + | chr5_1:2688344-2688363 | None:intergenic | 50.0% | |
| GGTCAACACTCCAATGACCT+AGG | - | chr5_1:2688468-2688487 | Msa0710860:intron | 50.0% | |
| TGTCAAGTCAGGAAGAGGGA+AGG | - | chr5_1:2688859-2688878 | Msa0710860:CDS | 50.0% | |
| AGTAACACTGGACCAGAGGA+AGG | - | chr5_1:2688897-2688916 | Msa0710860:CDS | 50.0% | |
| GGCTTCTTGATCGTCCTCTT+GGG | + | chr5_1:2688927-2688946 | None:intergenic | 50.0% | |
| TGGGGGTGGAATTCTTGGAA+GGG | + | chr5_1:2688040-2688059 | None:intergenic | 50.0% | |
| GGGATTCATCATCAGAGGGA+GGG | + | chr5_1:2688085-2688104 | None:intergenic | 50.0% | |
| ! | ACTCTGAAGGGTAGTTGGGT+TGG | + | chr5_1:2688117-2688136 | None:intergenic | 50.0% |
| GATGGCGAAGGAGTAAGTGA+TGG | - | chr5_1:2688173-2688192 | Msa0710860:intron | 50.0% | |
| ATGGTCAAGCTATGAAGGGG+AGG | - | chr5_1:2688192-2688211 | Msa0710860:intron | 50.0% | |
| !! | GGAGGTGCTGAATAACCATG+GGG | + | chr5_1:2688311-2688330 | None:intergenic | 50.0% |
| !! | CAGGAGGTGCTGAATAACCA+TGG | + | chr5_1:2688313-2688332 | None:intergenic | 50.0% |
| CATGGTTATTCAGCACCTCC+TGG | - | chr5_1:2688311-2688330 | Msa0710860:intron | 50.0% | |
| GGAAGTGGAGAAAAACCAGG+AGG | + | chr5_1:2688329-2688348 | None:intergenic | 50.0% | |
| GCTGTTGATGTGGAAGGAAG+TGG | + | chr5_1:2688344-2688363 | None:intergenic | 50.0% | |
| GGTCAACACTCCAATGACCT+AGG | - | chr5_1:2688468-2688487 | Msa0710860:intron | 50.0% | |
| TGTCAAGTCAGGAAGAGGGA+AGG | - | chr5_1:2688859-2688878 | Msa0710860:CDS | 50.0% | |
| AGTAACACTGGACCAGAGGA+AGG | - | chr5_1:2688897-2688916 | Msa0710860:CDS | 50.0% | |
| GGCTTCTTGATCGTCCTCTT+GGG | + | chr5_1:2688927-2688946 | None:intergenic | 50.0% | |
| GTGGGGGTGGAATTCTTGGA+AGG | + | chr5_1:2688041-2688060 | None:intergenic | 55.0% | |
| !! | TGAGGGGACTTGTTGGTGGT+GGG | + | chr5_1:2688059-2688078 | None:intergenic | 55.0% |
| !! | TTGAGGGGACTTGTTGGTGG+TGG | + | chr5_1:2688060-2688079 | None:intergenic | 55.0% |
| !! | GTCTTGAGGGGACTTGTTGG+TGG | + | chr5_1:2688063-2688082 | None:intergenic | 55.0% |
| AGGGTCTTGAGGGGACTTGT+TGG | + | chr5_1:2688066-2688085 | None:intergenic | 55.0% | |
| ATCAGAGGGAGGGTCTTGAG+GGG | + | chr5_1:2688075-2688094 | None:intergenic | 55.0% | |
| CATCAGAGGGAGGGTCTTGA+GGG | + | chr5_1:2688076-2688095 | None:intergenic | 55.0% | |
| TCATCAGAGGGAGGGTCTTG+AGG | + | chr5_1:2688077-2688096 | None:intergenic | 55.0% | |
| GGGGATTCATCATCAGAGGG+AGG | + | chr5_1:2688086-2688105 | None:intergenic | 55.0% | |
| AGCTCGTGAGAATGGGAAGC+TGG | - | chr5_1:2688145-2688164 | Msa0710860:CDS | 55.0% | |
| AATGGGAAGCTGGCAGCTGA+TGG | - | chr5_1:2688155-2688174 | Msa0710860:intron | 55.0% | |
| !! | TTGATCAGGTTGAGGTGGGG+TGG | + | chr5_1:2688366-2688385 | None:intergenic | 55.0% |
| CAGGAAGAGGGAAGGAACCA+AGG | - | chr5_1:2688867-2688886 | Msa0710860:CDS | 55.0% | |
| ACACTGGACCAGAGGAAGGA+AGG | - | chr5_1:2688901-2688920 | Msa0710860:CDS | 55.0% | |
| GGGCTTCTTGATCGTCCTCT+TGG | + | chr5_1:2688928-2688947 | None:intergenic | 55.0% | |
| GTGGGGGTGGAATTCTTGGA+AGG | + | chr5_1:2688041-2688060 | None:intergenic | 55.0% | |
| !! | TGAGGGGACTTGTTGGTGGT+GGG | + | chr5_1:2688059-2688078 | None:intergenic | 55.0% |
| !! | TTGAGGGGACTTGTTGGTGG+TGG | + | chr5_1:2688060-2688079 | None:intergenic | 55.0% |
| !! | GTCTTGAGGGGACTTGTTGG+TGG | + | chr5_1:2688063-2688082 | None:intergenic | 55.0% |
| AGGGTCTTGAGGGGACTTGT+TGG | + | chr5_1:2688066-2688085 | None:intergenic | 55.0% | |
| ATCAGAGGGAGGGTCTTGAG+GGG | + | chr5_1:2688075-2688094 | None:intergenic | 55.0% | |
| CATCAGAGGGAGGGTCTTGA+GGG | + | chr5_1:2688076-2688095 | None:intergenic | 55.0% | |
| TCATCAGAGGGAGGGTCTTG+AGG | + | chr5_1:2688077-2688096 | None:intergenic | 55.0% | |
| GGGGATTCATCATCAGAGGG+AGG | + | chr5_1:2688086-2688105 | None:intergenic | 55.0% | |
| AGCTCGTGAGAATGGGAAGC+TGG | - | chr5_1:2688145-2688164 | Msa0710860:CDS | 55.0% | |
| AATGGGAAGCTGGCAGCTGA+TGG | - | chr5_1:2688155-2688174 | Msa0710860:intron | 55.0% | |
| !! | TTGATCAGGTTGAGGTGGGG+TGG | + | chr5_1:2688366-2688385 | None:intergenic | 55.0% |
| CAGGAAGAGGGAAGGAACCA+AGG | - | chr5_1:2688867-2688886 | Msa0710860:CDS | 55.0% | |
| ACACTGGACCAGAGGAAGGA+AGG | - | chr5_1:2688901-2688920 | Msa0710860:CDS | 55.0% | |
| GGGCTTCTTGATCGTCCTCT+TGG | + | chr5_1:2688928-2688947 | None:intergenic | 55.0% | |
| !! | GGTGGTGGGGGTGGAATTCT+TGG | + | chr5_1:2688045-2688064 | None:intergenic | 60.0% |
| !! | AGGGGACTTGTTGGTGGTGG+GGG | + | chr5_1:2688057-2688076 | None:intergenic | 60.0% |
| !! | GAGGGGACTTGTTGGTGGTG+GGG | + | chr5_1:2688058-2688077 | None:intergenic | 60.0% |
| ! | AAGCTGGCAGCTGATGGCGA+AGG | - | chr5_1:2688161-2688180 | Msa0710860:intron | 60.0% |
| GGGGTGGCTGTTGATGTGGA+AGG | + | chr5_1:2688350-2688369 | None:intergenic | 60.0% | |
| AGGTGGGGTGGCTGTTGATG+TGG | + | chr5_1:2688354-2688373 | None:intergenic | 60.0% | |
| CTCTTGGGCCTTCCTTCCTC+TGG | + | chr5_1:2688912-2688931 | None:intergenic | 60.0% | |
| CAGAGGAAGGAAGGCCCAAG+AGG | - | chr5_1:2688910-2688929 | Msa0710860:CDS | 60.0% | |
| !! | GGTGGTGGGGGTGGAATTCT+TGG | + | chr5_1:2688045-2688064 | None:intergenic | 60.0% |
| !! | AGGGGACTTGTTGGTGGTGG+GGG | + | chr5_1:2688057-2688076 | None:intergenic | 60.0% |
| !! | GAGGGGACTTGTTGGTGGTG+GGG | + | chr5_1:2688058-2688077 | None:intergenic | 60.0% |
| ! | AAGCTGGCAGCTGATGGCGA+AGG | - | chr5_1:2688161-2688180 | Msa0710860:intron | 60.0% |
| GGGGTGGCTGTTGATGTGGA+AGG | + | chr5_1:2688350-2688369 | None:intergenic | 60.0% | |
| AGGTGGGGTGGCTGTTGATG+TGG | + | chr5_1:2688354-2688373 | None:intergenic | 60.0% | |
| CTCTTGGGCCTTCCTTCCTC+TGG | + | chr5_1:2688912-2688931 | None:intergenic | 60.0% | |
| CAGAGGAAGGAAGGCCCAAG+AGG | - | chr5_1:2688910-2688929 | Msa0710860:CDS | 60.0% | |
| !! | GGACTTGTTGGTGGTGGGGG+TGG | + | chr5_1:2688054-2688073 | None:intergenic | 65.0% |
| !! | GGACTTGTTGGTGGTGGGGG+TGG | + | chr5_1:2688054-2688073 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 2688017 | 2688962 | 2688017 | ID=Msa0710860;Name=Msa0710860 |
| chr5_1 | mRNA | 2688017 | 2688962 | 2688017 | ID=Msa0710860-mRNA-1;Parent=Msa0710860;Name=Msa0710860-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|0.5|1|1|2|0|174 |
| chr5_1 | exon | 2688587 | 2688962 | 2688587 | ID=Msa0710860-mRNA-1:exon:877;Parent=Msa0710860-mRNA-1 |
| chr5_1 | exon | 2688017 | 2688165 | 2688017 | ID=Msa0710860-mRNA-1:exon:876;Parent=Msa0710860-mRNA-1 |
| chr5_1 | CDS | 2688587 | 2688962 | 2688587 | ID=Msa0710860-mRNA-1:cds;Parent=Msa0710860-mRNA-1 |
| chr5_1 | CDS | 2688017 | 2688165 | 2688017 | ID=Msa0710860-mRNA-1:cds;Parent=Msa0710860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
