AlfalfaGEDB | Msa0710860

M. sativa cultivar zhongmu-4 / Msa0710860

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0710860	AES95288.1	59.218	179	32	4	6	158	4	167	1.86e-56	185

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0710860	G7K021	59.218	179	32	4	6	158	4	167	8.87e-57	185

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TFs/TRs:

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Gene ID	Type	Classification
Msa0710860	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0710860	MtrunA17_Chr5g0406781	72.800	125	17	3	6	126	4	115	3.75e-56	172

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 72 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGTAACACTGGACCAG+AGG	0.661812	5_1:-2688064	Msa0710860:CDS
AAAGAACTCTGAAGGGTAGT+TGG	0.402173	5_1:+2688838	None:intergenic
AAGAACTCTGAAGGGTAGTT+GGG	0.428150	5_1:+2688839	None:intergenic
AAGCCAGCCAATAGAGATAG+AGG	0.474391	5_1:-2688133	Msa0710860:CDS
AAGCTGGCAGCTGATGGCGA+AGG	0.613924	5_1:-2688796	Msa0710860:CDS
AAGTGATGGTCAAGCTATGA+AGG	0.473835	5_1:-2688770	Msa0710860:CDS
AATGGGAAGCTGGCAGCTGA+TGG	0.610197	5_1:-2688802	Msa0710860:CDS
ACAATGTCAAGTCAGGAAGA+GGG	0.642713	5_1:-2688102	Msa0710860:CDS
ACACTGGACCAGAGGAAGGA+AGG	0.583767	5_1:-2688056	Msa0710860:CDS
ACCTCAACCTGATCAATATG+AGG	0.437745	5_1:-2688587	Msa0710860:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATATAGCCAATAAAACCCT+AGG	+	chr5_1:2688488-2688507	None:intergenic	30.0%
TATATAGCCAATAAAACCCT+AGG	+	chr5_1:2688488-2688507	None:intergenic	30.0%
AGCTCTTAAAGAACTCTGAA+GGG	+	chr5_1:2688129-2688148	None:intergenic	35.0%
TTATGAGATCTAAGTCATGG+AGG	-	chr5_1:2688658-2688677	Msa0710860:CDS	35.0%
AGCTCTTAAAGAACTCTGAA+GGG	+	chr5_1:2688129-2688148	None:intergenic	35.0%
TTATGAGATCTAAGTCATGG+AGG	-	chr5_1:2688658-2688677	Msa0710860:CDS	35.0%
TCTTGGAAGGGTTAGGTTTA+GGG	+	chr5_1:2688028-2688047	None:intergenic	40.0%
TTCTTGGAAGGGTTAGGTTT+AGG	+	chr5_1:2688029-2688048	None:intergenic	40.0%
GAGCTCTTAAAGAACTCTGA+AGG	+	chr5_1:2688130-2688149	None:intergenic	40.0%
AAGTGATGGTCAAGCTATGA+AGG	-	chr5_1:2688187-2688206	Msa0710860:intron	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	2688017	2688962	2688017	ID=Msa0710860;Name=Msa0710860
chr5_1	mRNA	2688017	2688962	2688017	ID=Msa0710860-mRNA-1;Parent=Msa0710860;Name=Msa0710860-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|174
chr5_1	exon	2688587	2688962	2688587	ID=Msa0710860-mRNA-1:exon:877;Parent=Msa0710860-mRNA-1
chr5_1	exon	2688017	2688165	2688017	ID=Msa0710860-mRNA-1:exon:876;Parent=Msa0710860-mRNA-1
chr5_1	CDS	2688587	2688962	2688587	ID=Msa0710860-mRNA-1:cds;Parent=Msa0710860-mRNA-1
chr5_1	CDS	2688017	2688165	2688017	ID=Msa0710860-mRNA-1:cds;Parent=Msa0710860-mRNA-1

Gene Sequence

>Msa0710860

ATGCTGAACCCTAAACCTAACCCTTCCAAGAATTCCACCCCCACCACCAACAAGTCCCCTCAAGACCCTCCCTCTGATGATGAATCCCCCAAAGAAACCAACCCAACTACCCTTCAGAGTTCTTTAAGAGCTCGTGAGAATGGGAAGCTGGCAGCTGATGGCGAAGGAGTAAGTGATGGTCAAGCTATGAAGGGGAGGAAGAGTAATATTTGTTGTCATAGATGCAAACATGTGTTTCCCACTTGGGCTACTTTGATGAAGCATTATCAAGAACACTATATTTGTTGTCATCCCCATGGTTATTCAGCACCTCCTGGTTTTTCTCCACTTCCTTCCACATCAACAGCCACCCCACCTCAACCTGATCAATATGAGGGTGATGATCAAAGCCAGCCAATAGAGATAGAGGACTCTGATACAATGTCAAGTCAGGAAGAGGGAAGGAACCAAGGTGCAAACAGTAACACTGGACCAGAGGAAGGAAGGCCCAAGAGGACGATCAAGAAGCCCAGCCGATACAACTGA

Protein sequence

>Msa0710860

MLNPKPNPSKNSTPTTNKSPQDPPSDDESPKETNPTTLQSSLRARENGKLAADGEGVSDGQAMKGRKSNICCHRCKHVFPTWATLMKHYQEHYICCHPHGYSAPPGFSPLPSTSTATPPQPDQYEGDDQSQPIEIEDSDTMSSQEEGRNQGANSNTGPEEGRPKRTIKKPSRYN*