Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0710870 | AES93798.1 | 93.353 | 331 | 22 | 0 | 1 | 331 | 1 | 331 | 0.0 | 622 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0710870 | sp|Q8LAU9|GATA1_ARATH | 40.444 | 225 | 99 | 5 | 24 | 220 | 40 | 257 | 1.66e-40 | 145 |
| Msa0710870 | sp|Q8LAU9|GATA1_ARATH | 67.778 | 90 | 22 | 1 | 243 | 325 | 171 | 260 | 7.23e-37 | 136 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0710870 | G7K6G0 | 93.353 | 331 | 22 | 0 | 1 | 331 | 1 | 331 | 0.0 | 622 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0710870 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0710870 | MtrunA17_Chr5g0395391 | 93.353 | 331 | 22 | 0 | 1 | 331 | 12 | 342 | 0.0 | 622 |
| Msa0710870 | MtrunA17_Chr1g0169431 | 69.874 | 239 | 57 | 3 | 1 | 224 | 1 | 239 | 1.91e-98 | 290 |
| Msa0710870 | MtrunA17_Chr1g0169431 | 80.000 | 110 | 22 | 0 | 222 | 331 | 135 | 244 | 3.56e-60 | 193 |
| Msa0710870 | MtrunA17_Chr8g0340401 | 68.293 | 82 | 26 | 0 | 248 | 329 | 215 | 296 | 4.55e-34 | 127 |
| Msa0710870 | MtrunA17_Chr8g0340401 | 41.935 | 186 | 97 | 5 | 46 | 224 | 112 | 293 | 9.01e-33 | 124 |
| Msa0710870 | MtrunA17_Chr2g0326771 | 68.831 | 77 | 24 | 0 | 247 | 323 | 204 | 280 | 2.68e-33 | 125 |
| Msa0710870 | MtrunA17_Chr2g0326771 | 44.720 | 161 | 57 | 4 | 83 | 220 | 128 | 279 | 2.21e-31 | 120 |
| Msa0710870 | MtrunA17_Chr8g0372291 | 68.000 | 75 | 24 | 0 | 257 | 331 | 216 | 290 | 5.32e-33 | 124 |
| Msa0710870 | MtrunA17_Chr8g0372291 | 70.000 | 70 | 21 | 0 | 155 | 224 | 216 | 285 | 5.38e-30 | 115 |
| Msa0710870 | MtrunA17_Chr3g0140331 | 76.056 | 71 | 17 | 0 | 258 | 328 | 252 | 322 | 7.47e-33 | 125 |
| Msa0710870 | MtrunA17_Chr3g0140331 | 73.913 | 69 | 18 | 0 | 156 | 224 | 252 | 320 | 1.25e-29 | 116 |
| Msa0710870 | MtrunA17_Chr1g0146231 | 74.286 | 70 | 18 | 0 | 259 | 328 | 234 | 303 | 8.53e-33 | 124 |
| Msa0710870 | MtrunA17_Chr1g0146231 | 71.831 | 71 | 20 | 0 | 157 | 227 | 234 | 304 | 1.29e-29 | 115 |
| Msa0710870 | MtrunA17_Chr1g0199671 | 56.190 | 105 | 44 | 2 | 220 | 323 | 203 | 306 | 1.24e-31 | 120 |
| Msa0710870 | MtrunA17_Chr1g0199671 | 54.545 | 99 | 45 | 0 | 122 | 220 | 207 | 305 | 5.21e-30 | 116 |
| Msa0710870 | MtrunA17_Chr6g0461591 | 72.059 | 68 | 19 | 0 | 258 | 325 | 191 | 258 | 3.87e-31 | 118 |
| Msa0710870 | MtrunA17_Chr6g0461591 | 73.846 | 65 | 17 | 0 | 156 | 220 | 191 | 255 | 7.82e-30 | 114 |
| Msa0710870 | MtrunA17_Chr4g0035891 | 48.611 | 144 | 58 | 5 | 191 | 328 | 147 | 280 | 3.89e-31 | 119 |
| Msa0710870 | MtrunA17_Chr4g0035891 | 70.588 | 68 | 20 | 0 | 157 | 224 | 211 | 278 | 6.69e-28 | 110 |
| Msa0710870 | MtrunA17_Chr1g0213161 | 66.197 | 71 | 24 | 0 | 257 | 327 | 150 | 220 | 9.22e-31 | 116 |
| Msa0710870 | MtrunA17_Chr1g0213161 | 45.985 | 137 | 64 | 2 | 86 | 220 | 87 | 215 | 3.48e-28 | 109 |
| Msa0710870 | MtrunA17_Chr4g0028961 | 67.089 | 79 | 26 | 0 | 247 | 325 | 220 | 298 | 9.57e-31 | 118 |
| Msa0710870 | MtrunA17_Chr4g0028961 | 62.651 | 83 | 30 | 1 | 139 | 220 | 213 | 295 | 1.20e-28 | 112 |
| Msa0710870 | MtrunA17_Chr5g0404981 | 67.123 | 73 | 24 | 0 | 259 | 331 | 300 | 372 | 1.82e-30 | 119 |
| Msa0710870 | MtrunA17_Chr5g0404981 | 66.667 | 72 | 24 | 0 | 157 | 228 | 300 | 371 | 6.94e-28 | 112 |
| Msa0710870 | MtrunA17_Chr7g0253101 | 73.846 | 65 | 17 | 0 | 259 | 323 | 188 | 252 | 4.44e-30 | 115 |
| Msa0710870 | MtrunA17_Chr7g0253101 | 75.000 | 64 | 16 | 0 | 157 | 220 | 188 | 251 | 3.18e-29 | 113 |
| Msa0710870 | MtrunA17_Chr3g0145121 | 62.025 | 79 | 30 | 0 | 250 | 328 | 206 | 284 | 1.04e-29 | 115 |
| Msa0710870 | MtrunA17_Chr3g0145121 | 59.259 | 81 | 33 | 0 | 148 | 228 | 206 | 286 | 1.00e-27 | 109 |
| Msa0710870 | MtrunA17_Chr7g0232671 | 53.731 | 67 | 29 | 1 | 259 | 325 | 187 | 251 | 1.05e-17 | 81.3 |
| Msa0710870 | MtrunA17_Chr7g0232671 | 54.839 | 62 | 28 | 0 | 157 | 218 | 187 | 248 | 1.52e-17 | 80.9 |
| Msa0710870 | MtrunA17_Chr7g0232701 | 49.333 | 75 | 37 | 1 | 247 | 320 | 60 | 134 | 1.89e-16 | 75.1 |
| Msa0710870 | MtrunA17_Chr7g0232701 | 51.613 | 62 | 30 | 0 | 157 | 218 | 73 | 134 | 1.71e-15 | 72.4 |
| Msa0710870 | MtrunA17_Chr7g0232681 | 48.000 | 75 | 38 | 1 | 247 | 320 | 119 | 193 | 1.46e-15 | 74.3 |
| Msa0710870 | MtrunA17_Chr7g0232681 | 50.000 | 62 | 31 | 0 | 157 | 218 | 132 | 193 | 7.74e-15 | 72.0 |
| Msa0710870 | MtrunA17_Chr5g0404131 | 34.234 | 111 | 55 | 3 | 92 | 189 | 119 | 224 | 3.94e-11 | 63.2 |
| Msa0710870 | MtrunA17_Chr7g0271861 | 57.143 | 42 | 18 | 0 | 151 | 192 | 16 | 57 | 8.40e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0710870 | AT3G24050.1 | 40.444 | 225 | 99 | 5 | 24 | 220 | 40 | 257 | 1.68e-41 | 145 |
| Msa0710870 | AT3G24050.1 | 67.778 | 90 | 22 | 1 | 243 | 325 | 171 | 260 | 7.35e-38 | 136 |
| Msa0710870 | AT4G32890.1 | 73.611 | 72 | 19 | 0 | 258 | 329 | 196 | 267 | 5.80e-34 | 127 |
| Msa0710870 | AT4G32890.1 | 34.630 | 257 | 117 | 8 | 7 | 224 | 20 | 264 | 2.13e-30 | 117 |
| Msa0710870 | AT4G34680.1 | 47.857 | 140 | 58 | 4 | 96 | 224 | 112 | 247 | 1.86e-33 | 124 |
| Msa0710870 | AT4G34680.1 | 54.128 | 109 | 48 | 1 | 222 | 328 | 141 | 249 | 4.58e-33 | 123 |
| Msa0710870 | AT4G34680.2 | 47.857 | 140 | 58 | 4 | 96 | 224 | 112 | 247 | 1.86e-33 | 124 |
| Msa0710870 | AT4G34680.2 | 54.128 | 109 | 48 | 1 | 222 | 328 | 141 | 249 | 4.58e-33 | 123 |
| Msa0710870 | AT5G25830.1 | 74.286 | 70 | 18 | 0 | 259 | 328 | 219 | 288 | 4.60e-32 | 122 |
| Msa0710870 | AT5G25830.1 | 73.529 | 68 | 18 | 0 | 157 | 224 | 219 | 286 | 3.27e-29 | 114 |
| Msa0710870 | AT3G60530.1 | 61.628 | 86 | 33 | 0 | 241 | 326 | 140 | 225 | 7.72e-32 | 119 |
| Msa0710870 | AT3G60530.1 | 47.967 | 123 | 56 | 2 | 109 | 224 | 104 | 225 | 3.90e-31 | 117 |
| Msa0710870 | AT5G66320.2 | 75.000 | 68 | 17 | 0 | 259 | 326 | 249 | 316 | 1.86e-31 | 121 |
| Msa0710870 | AT5G66320.2 | 72.059 | 68 | 19 | 0 | 157 | 224 | 249 | 316 | 7.23e-29 | 114 |
| Msa0710870 | AT5G66320.1 | 75.000 | 68 | 17 | 0 | 259 | 326 | 249 | 316 | 1.86e-31 | 121 |
| Msa0710870 | AT5G66320.1 | 72.059 | 68 | 19 | 0 | 157 | 224 | 249 | 316 | 7.23e-29 | 114 |
| Msa0710870 | AT2G45050.1 | 70.000 | 70 | 21 | 0 | 259 | 328 | 179 | 248 | 5.78e-31 | 118 |
| Msa0710870 | AT2G45050.1 | 45.578 | 147 | 56 | 4 | 101 | 224 | 101 | 246 | 1.62e-29 | 114 |
| Msa0710870 | AT1G08010.2 | 62.500 | 80 | 30 | 0 | 246 | 325 | 207 | 286 | 8.02e-31 | 118 |
| Msa0710870 | AT1G08010.2 | 51.667 | 120 | 50 | 3 | 111 | 222 | 166 | 285 | 2.92e-30 | 117 |
| Msa0710870 | AT1G08010.1 | 62.500 | 80 | 30 | 0 | 246 | 325 | 207 | 286 | 8.02e-31 | 118 |
| Msa0710870 | AT1G08010.1 | 51.667 | 120 | 50 | 3 | 111 | 222 | 166 | 285 | 2.92e-30 | 117 |
| Msa0710870 | AT1G08010.3 | 62.500 | 80 | 30 | 0 | 246 | 325 | 207 | 286 | 8.02e-31 | 118 |
| Msa0710870 | AT1G08010.3 | 51.667 | 120 | 50 | 3 | 111 | 222 | 166 | 285 | 2.92e-30 | 117 |
| Msa0710870 | AT1G08000.2 | 60.976 | 82 | 32 | 0 | 244 | 325 | 203 | 284 | 3.06e-30 | 117 |
| Msa0710870 | AT1G08000.2 | 37.755 | 196 | 83 | 7 | 56 | 220 | 94 | 281 | 5.18e-29 | 114 |
| Msa0710870 | AT1G08000.1 | 60.976 | 82 | 32 | 0 | 244 | 325 | 203 | 284 | 3.06e-30 | 117 |
| Msa0710870 | AT1G08000.1 | 37.755 | 196 | 83 | 7 | 56 | 220 | 94 | 281 | 5.18e-29 | 114 |
| Msa0710870 | AT3G51080.1 | 68.493 | 73 | 23 | 0 | 259 | 331 | 221 | 293 | 3.34e-30 | 117 |
| Msa0710870 | AT3G51080.1 | 72.059 | 68 | 19 | 0 | 157 | 224 | 221 | 288 | 1.16e-28 | 113 |
| Msa0710870 | AT4G36240.1 | 64.865 | 74 | 26 | 0 | 253 | 326 | 158 | 231 | 2.27e-29 | 113 |
| Msa0710870 | AT4G36240.1 | 36.967 | 211 | 89 | 6 | 23 | 220 | 48 | 227 | 7.05e-28 | 108 |
| Msa0710870 | AT3G54810.1 | 69.118 | 68 | 21 | 0 | 259 | 326 | 229 | 296 | 8.39e-28 | 110 |
| Msa0710870 | AT3G54810.1 | 70.312 | 64 | 19 | 0 | 157 | 220 | 229 | 292 | 5.59e-26 | 105 |
| Msa0710870 | AT3G54810.2 | 69.118 | 68 | 21 | 0 | 259 | 326 | 229 | 296 | 8.39e-28 | 110 |
| Msa0710870 | AT3G54810.2 | 70.312 | 64 | 19 | 0 | 157 | 220 | 229 | 292 | 5.59e-26 | 105 |
| Msa0710870 | AT3G45170.1 | 41.781 | 146 | 79 | 2 | 80 | 224 | 42 | 182 | 1.01e-27 | 107 |
| Msa0710870 | AT3G45170.1 | 62.319 | 69 | 26 | 0 | 259 | 327 | 115 | 183 | 1.08e-26 | 105 |
| Msa0710870 | AT2G28340.1 | 65.079 | 63 | 22 | 0 | 261 | 323 | 193 | 255 | 2.68e-24 | 100 |
| Msa0710870 | AT2G28340.1 | 66.667 | 60 | 20 | 0 | 159 | 218 | 193 | 252 | 1.15e-22 | 96.3 |
| Msa0710870 | AT3G06740.1 | 63.889 | 36 | 13 | 0 | 157 | 192 | 41 | 76 | 4.42e-11 | 60.8 |
Find 86 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTGCAGGGCGGTATTC+AGG | 0.237442 | 5_1:+2702515 | None:intergenic |
| CTATTTGCAGGGCGGTATTC+AGG | 0.337416 | 5_1:+2702209 | None:intergenic |
| GGTTTGCTTCGATTGTTCTT+TGG | 0.359998 | 5_1:+2702358 | None:intergenic |
| ACAGGAAAGTAGTGGAAATA+AGG | 0.364798 | 5_1:-2702151 | Msa0710870:CDS |
| GTTGTTTCCACGCGAATTGA+TGG | 0.373020 | 5_1:+2702702 | None:intergenic |
| ATGCATGTGGGGTCAGGTAT+AGG | 0.384736 | 5_1:-2702247 | Msa0710870:CDS |
| ATGCATGTGGGGTTAGGTAT+AGG | 0.393134 | 5_1:-2702553 | Msa0710870:CDS |
| CGAAATATCTGGTTGAATAC+AGG | 0.393474 | 5_1:+2702895 | None:intergenic |
| CCACGCGAATTGATGGTTCC+AGG | 0.401734 | 5_1:+2702709 | None:intergenic |
| AGCTGGAAATGCATCTTTGT+TGG | 0.402382 | 5_1:+2702940 | None:intergenic |
| GCTGTTTCCACGTGAATTGA+CGG | 0.414591 | 5_1:+2702396 | None:intergenic |
| TTTGTAATGCATGTGGGGTT+AGG | 0.415099 | 5_1:-2702559 | Msa0710870:CDS |
| TCTTTGGATGCTTTGTTACT+CGG | 0.415607 | 5_1:+2702374 | None:intergenic |
| TCATCAAATGTTTCAACAGC+TGG | 0.422269 | 5_1:+2702923 | None:intergenic |
| GCCTTGGCATTTCTGATACC+TGG | 0.422871 | 5_1:-2702727 | Msa0710870:CDS |
| GAAGCAGAAGAGAATGAGAA+TGG | 0.447611 | 5_1:-2702129 | Msa0710870:CDS |
| GAGCTGATAATACTCCTCTA+TGG | 0.452228 | 5_1:-2702610 | Msa0710870:CDS |
| CTATGGCGTGCAGGTCCTGC+TGG | 0.452250 | 5_1:-2702593 | Msa0710870:CDS |
| CTTGTGCTGTTCTCAACAAT+TGG | 0.453321 | 5_1:+2702854 | None:intergenic |
| GACTTGCTCCGTGCACGGAC+AGG | 0.469909 | 5_1:+2702764 | None:intergenic |
| TTGATTCTGTGGATGACCTA+TGG | 0.476926 | 5_1:-2703507 | Msa0710870:CDS |
| TTTGTAATGCATGTGGGGTC+AGG | 0.477301 | 5_1:-2702253 | Msa0710870:CDS |
| GCCTTGGCATTTCTGACACA+TGG | 0.480082 | 5_1:-2702421 | Msa0710870:CDS |
| ACATTTCCTCCCAATGGTTG+AGG | 0.482486 | 5_1:+2702337 | None:intergenic |
| CGAAGCAAACCTCAACCATT+GGG | 0.485894 | 5_1:-2702346 | Msa0710870:CDS |
| GCGAAACAAACCTCAACCAT+TGG | 0.490923 | 5_1:-2702653 | Msa0710870:CDS |
| TTAAACTTACAGAAAATGAA+TGG | 0.491207 | 5_1:+2703404 | None:intergenic |
| GACAGCATTACACTCTTAAG+TGG | 0.494877 | 5_1:-2702806 | Msa0710870:CDS |
| AAGCAGAAGAGAATGAGAAT+GGG | 0.496918 | 5_1:-2702128 | Msa0710870:CDS |
| ACATTGCCTCCCAATGGTTG+AGG | 0.497491 | 5_1:+2702643 | None:intergenic |
| TCGAAGCAAACCTCAACCAT+TGG | 0.499266 | 5_1:-2702347 | Msa0710870:CDS |
| AGCATTTCCTTCATTTGACC+TGG | 0.504334 | 5_1:-2703437 | Msa0710870:CDS |
| TATTTCCACTACTTTCCTGT+GGG | 0.505142 | 5_1:+2702154 | None:intergenic |
| CGAAACAAACCTCAACCATT+GGG | 0.506442 | 5_1:-2702652 | Msa0710870:CDS |
| ACTTACAGAAAATGAATGGT+TGG | 0.511740 | 5_1:+2703408 | None:intergenic |
| GATGGAGGCTCTTGATTCTG+TGG | 0.514579 | 5_1:-2703518 | Msa0710870:CDS |
| GTTCCAGGAGTTTGCAGTAG+AGG | 0.515595 | 5_1:-2702978 | Msa0710870:intron |
| AATACTCCGCAATGGCGTGC+AGG | 0.516576 | 5_1:-2702296 | Msa0710870:CDS |
| TGTGGGGTCAGGTATAGGTC+TGG | 0.529286 | 5_1:-2702242 | Msa0710870:CDS |
| TGAAGTTCCCTGTCCGTGCA+CGG | 0.541394 | 5_1:-2702772 | Msa0710870:CDS |
| TGGAGTTTCTTATCTGACAT+AGG | 0.541869 | 5_1:-2703487 | Msa0710870:CDS |
| TTATTTCCACTACTTTCCTG+TGG | 0.542402 | 5_1:+2702153 | None:intergenic |
| TTGCAGTAGAGGATCTTGAA+TGG | 0.544677 | 5_1:-2702967 | Msa0710870:CDS |
| AATACTCCTCTATGGCGTGC+AGG | 0.546436 | 5_1:-2702602 | Msa0710870:CDS |
| TGTGGGGTTAGGTATAGGTC+TGG | 0.555845 | 5_1:-2702548 | Msa0710870:CDS |
| ATGAATGGTTGGTATCATCC+AGG | 0.557618 | 5_1:+2703419 | None:intergenic |
| TATTTCCACTACTTTCCTGT+GGG | 0.558023 | 5_1:+2702460 | None:intergenic |
| TGCGAGACTTGCTCCGTGCA+CGG | 0.562316 | 5_1:+2702759 | None:intergenic |
| ACTTGCTCCGTGCACGGACA+GGG | 0.574860 | 5_1:+2702765 | None:intergenic |
| AACACTTTGTAATGCATGTG+GGG | 0.575624 | 5_1:-2702564 | Msa0710870:CDS |
| GTATCATCCAGGTCAAATGA+AGG | 0.576270 | 5_1:+2703430 | None:intergenic |
| GCAGGACCTGCACGCCATAG+AGG | 0.577006 | 5_1:+2702596 | None:intergenic |
| AAAACACTTTGTAATGCATG+TGG | 0.577073 | 5_1:-2702260 | Msa0710870:CDS |
| AAAACACTTTGTAATGCATG+TGG | 0.577073 | 5_1:-2702566 | Msa0710870:CDS |
| TCTCGCAGTAAGCCTCGCCT+TGG | 0.577592 | 5_1:-2702743 | Msa0710870:CDS |
| ATGATGACATTTCCTCCCAA+TGG | 0.580868 | 5_1:+2702331 | None:intergenic |
| CAATGGCGTGCAGGTCCCGA+TGG | 0.590689 | 5_1:-2702287 | Msa0710870:CDS |
| ATTCGTAGTAAGCCTCGCCT+TGG | 0.591249 | 5_1:-2702437 | Msa0710870:CDS |
| TAATGCCCACAGGAAAGTAG+TGG | 0.591342 | 5_1:-2702159 | Msa0710870:CDS |
| TTATTTCCACTACTTTCCTG+TGG | 0.598127 | 5_1:+2702459 | None:intergenic |
| AAACACTTTGTAATGCATGT+GGG | 0.605185 | 5_1:-2702565 | Msa0710870:CDS |
| TAATTCCCACAGGAAAGTAG+TGG | 0.608211 | 5_1:-2702465 | Msa0710870:CDS |
| TCCAGGTATCAGAAATGCCA+AGG | 0.610134 | 5_1:+2702726 | None:intergenic |
| TCCATGTGTCAGAAATGCCA+AGG | 0.617962 | 5_1:+2702420 | None:intergenic |
| AACACTTTGTAATGCATGTG+GGG | 0.618425 | 5_1:-2702258 | Msa0710870:CDS |
| AAACACTTTGTAATGCATGT+GGG | 0.620936 | 5_1:-2702259 | Msa0710870:CDS |
| GGGAGGAAATGTCATCATTG+TGG | 0.622937 | 5_1:-2702326 | Msa0710870:CDS |
| GGGAGGCAATGTCATCATTG+TGG | 0.625233 | 5_1:-2702632 | Msa0710870:CDS |
| ATGTGCATTCTAATTCCCAC+AGG | 0.631252 | 5_1:-2702475 | Msa0710870:CDS |
| GGCGGTATTCAGGTACAAGT+CGG | 0.632650 | 5_1:+2702219 | None:intergenic |
| GGCGGTATTCAGGTACAAGT+CGG | 0.632650 | 5_1:+2702525 | None:intergenic |
| ACATGCATTCTAATGCCCAC+AGG | 0.637295 | 5_1:-2702169 | Msa0710870:CDS |
| TTTCTTATCTGACATAGGCG+AGG | 0.637448 | 5_1:-2703482 | Msa0710870:CDS |
| AACAAACCTCAACCATTGGG+AGG | 0.638620 | 5_1:-2702649 | Msa0710870:CDS |
| CCTGGAACCATCAATTCGCG+TGG | 0.640359 | 5_1:-2702709 | Msa0710870:CDS |
| ACTTAAGAGTGTAATGCTGT+CGG | 0.642198 | 5_1:+2702808 | None:intergenic |
| TGTCAGATAAGAAACTCCAT+AGG | 0.643894 | 5_1:+2703491 | None:intergenic |
| CATGGAACCGTCAATTCACG+TGG | 0.644051 | 5_1:-2702403 | Msa0710870:CDS |
| TCGGGACCTGCACGCCATTG+CGG | 0.648022 | 5_1:+2702290 | None:intergenic |
| ATGATGACATTGCCTCCCAA+TGG | 0.653586 | 5_1:+2702637 | None:intergenic |
| GTGTCAGAAATGCCAAGGCG+AGG | 0.655134 | 5_1:+2702425 | None:intergenic |
| AGCAAACCTCAACCATTGGG+AGG | 0.655985 | 5_1:-2702343 | Msa0710870:CDS |
| GTATCAGAAATGCCAAGGCG+AGG | 0.673094 | 5_1:+2702731 | None:intergenic |
| GAGCTGATAATACTCCGCAA+TGG | 0.677467 | 5_1:-2702304 | Msa0710870:CDS |
| AAGTTGGGCTCTTTGCAGGG+CGG | 0.700990 | 5_1:+2702507 | None:intergenic |
| AAGTTGGGCTATTTGCAGGG+CGG | 0.740794 | 5_1:+2702201 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAGAAAAGTATTATGATT+TGG | - | chr5_1:2702297-2702316 | Msa0710870:CDS | 15.0% |
| !!! | TTTAGAAAAGTATTATGATT+TGG | - | chr5_1:2702297-2702316 | Msa0710870:CDS | 15.0% |
| !! | TTAAACTTACAGAAAATGAA+TGG | + | chr5_1:2702245-2702264 | None:intergenic | 20.0% |
| !!! | ATACTTTTCTAAAATTCTCA+CGG | + | chr5_1:2702290-2702309 | None:intergenic | 20.0% |
| !!! | TACTTTCTAAAATTCTACTT+TGG | + | chr5_1:2702364-2702383 | None:intergenic | 20.0% |
| !! | TTAAACTTACAGAAAATGAA+TGG | + | chr5_1:2702245-2702264 | None:intergenic | 20.0% |
| !!! | ATACTTTTCTAAAATTCTCA+CGG | + | chr5_1:2702290-2702309 | None:intergenic | 20.0% |
| !!! | TACTTTCTAAAATTCTACTT+TGG | + | chr5_1:2702364-2702383 | None:intergenic | 20.0% |
| ! | AATGAAGGAAATGCTTTTGT+AGG | + | chr5_1:2702204-2702223 | None:intergenic | 30.0% |
| ACTTACAGAAAATGAATGGT+TGG | + | chr5_1:2702241-2702260 | None:intergenic | 30.0% | |
| TTTAACCTTTCCAAAATGCT+TGG | - | chr5_1:2702260-2702279 | Msa0710870:CDS | 30.0% | |
| !!! | GAATTTTAGAAAGTACTCCT+AGG | - | chr5_1:2702369-2702388 | Msa0710870:CDS | 30.0% |
| ! | TCCTTTTTGCATCAATGTAT+TGG | - | chr5_1:2702405-2702424 | Msa0710870:CDS | 30.0% |
| ! | TACTTGTGATCACTGTTTTA+AGG | - | chr5_1:2702494-2702513 | Msa0710870:CDS | 30.0% |
| TATTCAAACTGAGATAGATG+TGG | + | chr5_1:2702536-2702555 | None:intergenic | 30.0% | |
| !! | TTTTGATTCTGCGAAATATC+TGG | + | chr5_1:2702765-2702784 | None:intergenic | 30.0% |
| !! | CATGCATTACAAAGTGTTTT+TGG | + | chr5_1:2703080-2703099 | None:intergenic | 30.0% |
| AAAACACTTTGTAATGCATG+TGG | - | chr5_1:2703080-2703099 | Msa0710870:intron | 30.0% | |
| AAACACTTTGTAATGCATGT+GGG | - | chr5_1:2703081-2703100 | Msa0710870:intron | 30.0% | |
| !! | CATGCATTACAAAGTGTTTT+TGG | + | chr5_1:2703080-2703099 | None:intergenic | 30.0% |
| AAAACACTTTGTAATGCATG+TGG | - | chr5_1:2703080-2703099 | Msa0710870:intron | 30.0% | |
| AAACACTTTGTAATGCATGT+GGG | - | chr5_1:2703081-2703100 | Msa0710870:intron | 30.0% | |
| ! | AATGAAGGAAATGCTTTTGT+AGG | + | chr5_1:2702204-2702223 | None:intergenic | 30.0% |
| ACTTACAGAAAATGAATGGT+TGG | + | chr5_1:2702241-2702260 | None:intergenic | 30.0% | |
| TTTAACCTTTCCAAAATGCT+TGG | - | chr5_1:2702260-2702279 | Msa0710870:CDS | 30.0% | |
| !!! | GAATTTTAGAAAGTACTCCT+AGG | - | chr5_1:2702369-2702388 | Msa0710870:CDS | 30.0% |
| ! | TCCTTTTTGCATCAATGTAT+TGG | - | chr5_1:2702405-2702424 | Msa0710870:CDS | 30.0% |
| ! | TACTTGTGATCACTGTTTTA+AGG | - | chr5_1:2702494-2702513 | Msa0710870:CDS | 30.0% |
| TATTCAAACTGAGATAGATG+TGG | + | chr5_1:2702536-2702555 | None:intergenic | 30.0% | |
| !! | TTTTGATTCTGCGAAATATC+TGG | + | chr5_1:2702765-2702784 | None:intergenic | 30.0% |
| !! | CATGCATTACAAAGTGTTTT+TGG | + | chr5_1:2703080-2703099 | None:intergenic | 30.0% |
| AAAACACTTTGTAATGCATG+TGG | - | chr5_1:2703080-2703099 | Msa0710870:intron | 30.0% | |
| AAACACTTTGTAATGCATGT+GGG | - | chr5_1:2703081-2703100 | Msa0710870:intron | 30.0% | |
| !! | CATGCATTACAAAGTGTTTT+TGG | + | chr5_1:2703080-2703099 | None:intergenic | 30.0% |
| AAAACACTTTGTAATGCATG+TGG | - | chr5_1:2703080-2703099 | Msa0710870:intron | 30.0% | |
| AAACACTTTGTAATGCATGT+GGG | - | chr5_1:2703081-2703100 | Msa0710870:intron | 30.0% | |
| TGTCAGATAAGAAACTCCAT+AGG | + | chr5_1:2702158-2702177 | None:intergenic | 35.0% | |
| TGGAGTTTCTTATCTGACAT+AGG | - | chr5_1:2702159-2702178 | Msa0710870:CDS | 35.0% | |
| AGGAAGACAAGTAAAAACCT+AGG | + | chr5_1:2702389-2702408 | None:intergenic | 35.0% | |
| GCCAATACATTGATGCAAAA+AGG | + | chr5_1:2702409-2702428 | None:intergenic | 35.0% | |
| TCATCAAATGTTTCAACAGC+TGG | + | chr5_1:2702726-2702745 | None:intergenic | 35.0% | |
| CGAAATATCTGGTTGAATAC+AGG | + | chr5_1:2702754-2702773 | None:intergenic | 35.0% | |
| ! | ACTTAAGAGTGTAATGCTGT+CGG | + | chr5_1:2702841-2702860 | None:intergenic | 35.0% |
| AACACTTTGTAATGCATGTG+GGG | - | chr5_1:2703082-2703101 | Msa0710870:intron | 35.0% | |
| TATTTCCACTACTTTCCTGT+GGG | + | chr5_1:2703189-2703208 | None:intergenic | 35.0% | |
| TTATTTCCACTACTTTCCTG+TGG | + | chr5_1:2703190-2703209 | None:intergenic | 35.0% | |
| ! | TCTTTGGATGCTTTGTTACT+CGG | + | chr5_1:2703275-2703294 | None:intergenic | 35.0% |
| !!! | ACAAAGTGTTTTTGGACCAT+CGG | + | chr5_1:2703378-2703397 | None:intergenic | 35.0% |
| AACACTTTGTAATGCATGTG+GGG | - | chr5_1:2703082-2703101 | Msa0710870:intron | 35.0% | |
| AAAAAGTTGGGCTATTTGCA+GGG | + | chr5_1:2703451-2703470 | None:intergenic | 35.0% | |
| TATTTCCACTACTTTCCTGT+GGG | + | chr5_1:2703189-2703208 | None:intergenic | 35.0% | |
| TTATTTCCACTACTTTCCTG+TGG | + | chr5_1:2703190-2703209 | None:intergenic | 35.0% | |
| ! | ACAGGAAAGTAGTGGAAATA+AGG | - | chr5_1:2703189-2703208 | Msa0710870:intron | 35.0% |
| AAGCAGAAGAGAATGAGAAT+GGG | - | chr5_1:2703518-2703537 | Msa0710870:CDS | 35.0% | |
| TGTCAGATAAGAAACTCCAT+AGG | + | chr5_1:2702158-2702177 | None:intergenic | 35.0% | |
| TGGAGTTTCTTATCTGACAT+AGG | - | chr5_1:2702159-2702178 | Msa0710870:CDS | 35.0% | |
| AGGAAGACAAGTAAAAACCT+AGG | + | chr5_1:2702389-2702408 | None:intergenic | 35.0% | |
| GCCAATACATTGATGCAAAA+AGG | + | chr5_1:2702409-2702428 | None:intergenic | 35.0% | |
| TCATCAAATGTTTCAACAGC+TGG | + | chr5_1:2702726-2702745 | None:intergenic | 35.0% | |
| CGAAATATCTGGTTGAATAC+AGG | + | chr5_1:2702754-2702773 | None:intergenic | 35.0% | |
| ! | ACTTAAGAGTGTAATGCTGT+CGG | + | chr5_1:2702841-2702860 | None:intergenic | 35.0% |
| AACACTTTGTAATGCATGTG+GGG | - | chr5_1:2703082-2703101 | Msa0710870:intron | 35.0% | |
| TATTTCCACTACTTTCCTGT+GGG | + | chr5_1:2703189-2703208 | None:intergenic | 35.0% | |
| TTATTTCCACTACTTTCCTG+TGG | + | chr5_1:2703190-2703209 | None:intergenic | 35.0% | |
| ! | TCTTTGGATGCTTTGTTACT+CGG | + | chr5_1:2703275-2703294 | None:intergenic | 35.0% |
| !!! | ACAAAGTGTTTTTGGACCAT+CGG | + | chr5_1:2703378-2703397 | None:intergenic | 35.0% |
| AACACTTTGTAATGCATGTG+GGG | - | chr5_1:2703082-2703101 | Msa0710870:intron | 35.0% | |
| AAAAAGTTGGGCTATTTGCA+GGG | + | chr5_1:2703451-2703470 | None:intergenic | 35.0% | |
| TATTTCCACTACTTTCCTGT+GGG | + | chr5_1:2703189-2703208 | None:intergenic | 35.0% | |
| TTATTTCCACTACTTTCCTG+TGG | + | chr5_1:2703190-2703209 | None:intergenic | 35.0% | |
| ! | ACAGGAAAGTAGTGGAAATA+AGG | - | chr5_1:2703189-2703208 | Msa0710870:intron | 35.0% |
| AAGCAGAAGAGAATGAGAAT+GGG | - | chr5_1:2703518-2703537 | Msa0710870:CDS | 35.0% | |
| TTGATTCTGTGGATGACCTA+TGG | - | chr5_1:2702139-2702158 | Msa0710870:CDS | 40.0% | |
| TTTCTTATCTGACATAGGCG+AGG | - | chr5_1:2702164-2702183 | Msa0710870:CDS | 40.0% | |
| AGCATTTCCTTCATTTGACC+TGG | - | chr5_1:2702209-2702228 | Msa0710870:CDS | 40.0% | |
| GTATCATCCAGGTCAAATGA+AGG | + | chr5_1:2702219-2702238 | None:intergenic | 40.0% | |
| ! | ATGAATGGTTGGTATCATCC+AGG | + | chr5_1:2702230-2702249 | None:intergenic | 40.0% |
| ACCTTTCCAAAATGCTTGGA+AGG | - | chr5_1:2702264-2702283 | Msa0710870:CDS | 40.0% | |
| !!! | GTTTTAAGGTTTCCGTGTTG+TGG | - | chr5_1:2702508-2702527 | Msa0710870:CDS | 40.0% |
| TCCTGGAACATGAAAACAAG+CGG | + | chr5_1:2702591-2702610 | None:intergenic | 40.0% | |
| GTATTCACACTGAAAACTCC+TGG | + | chr5_1:2702608-2702627 | None:intergenic | 40.0% | |
| TTGCAGTAGAGGATCTTGAA+TGG | - | chr5_1:2702679-2702698 | Msa0710870:CDS | 40.0% | |
| AGCTGGAAATGCATCTTTGT+TGG | + | chr5_1:2702709-2702728 | None:intergenic | 40.0% | |
| ! | CTTGTGCTGTTCTCAACAAT+TGG | + | chr5_1:2702795-2702814 | None:intergenic | 40.0% |
| GACAGCATTACACTCTTAAG+TGG | - | chr5_1:2702840-2702859 | Msa0710870:CDS | 40.0% | |
| CGAAACAAACCTCAACCATT+GGG | - | chr5_1:2702994-2703013 | Msa0710870:intron | 40.0% | |
| GAGCTGATAATACTCCTCTA+TGG | - | chr5_1:2703036-2703055 | Msa0710870:intron | 40.0% | |
| TTTGTAATGCATGTGGGGTT+AGG | - | chr5_1:2703087-2703106 | Msa0710870:intron | 40.0% | |
| AAAAAGTTGGGCTCTTTGCA+GGG | + | chr5_1:2703145-2703164 | None:intergenic | 40.0% | |
| GCACATTGCTGCAAAAAGTT+GGG | + | chr5_1:2703157-2703176 | None:intergenic | 40.0% | |
| TGCACATTGCTGCAAAAAGT+TGG | + | chr5_1:2703158-2703177 | None:intergenic | 40.0% | |
| ATGTGCATTCTAATTCCCAC+AGG | - | chr5_1:2703171-2703190 | Msa0710870:intron | 40.0% | |
| TAATTCCCACAGGAAAGTAG+TGG | - | chr5_1:2703181-2703200 | Msa0710870:intron | 40.0% | |
| ! | GGTTTGCTTCGATTGTTCTT+TGG | + | chr5_1:2703291-2703310 | None:intergenic | 40.0% |
| ATGATGACATTTCCTCCCAA+TGG | + | chr5_1:2703318-2703337 | None:intergenic | 40.0% | |
| !!! | CAAAGTGTTTTTGGACCATC+GGG | + | chr5_1:2703377-2703396 | None:intergenic | 40.0% |
| CAAAAAGTTGGGCTATTTGC+AGG | + | chr5_1:2703452-2703471 | None:intergenic | 40.0% | |
| GAAGCAGAAGAGAATGAGAA+TGG | - | chr5_1:2703517-2703536 | Msa0710870:CDS | 40.0% | |
| TTGATTCTGTGGATGACCTA+TGG | - | chr5_1:2702139-2702158 | Msa0710870:CDS | 40.0% | |
| TTTCTTATCTGACATAGGCG+AGG | - | chr5_1:2702164-2702183 | Msa0710870:CDS | 40.0% | |
| AGCATTTCCTTCATTTGACC+TGG | - | chr5_1:2702209-2702228 | Msa0710870:CDS | 40.0% | |
| GTATCATCCAGGTCAAATGA+AGG | + | chr5_1:2702219-2702238 | None:intergenic | 40.0% | |
| ! | ATGAATGGTTGGTATCATCC+AGG | + | chr5_1:2702230-2702249 | None:intergenic | 40.0% |
| ACCTTTCCAAAATGCTTGGA+AGG | - | chr5_1:2702264-2702283 | Msa0710870:CDS | 40.0% | |
| !!! | GTTTTAAGGTTTCCGTGTTG+TGG | - | chr5_1:2702508-2702527 | Msa0710870:CDS | 40.0% |
| TCCTGGAACATGAAAACAAG+CGG | + | chr5_1:2702591-2702610 | None:intergenic | 40.0% | |
| GTATTCACACTGAAAACTCC+TGG | + | chr5_1:2702608-2702627 | None:intergenic | 40.0% | |
| TTGCAGTAGAGGATCTTGAA+TGG | - | chr5_1:2702679-2702698 | Msa0710870:CDS | 40.0% | |
| AGCTGGAAATGCATCTTTGT+TGG | + | chr5_1:2702709-2702728 | None:intergenic | 40.0% | |
| ! | CTTGTGCTGTTCTCAACAAT+TGG | + | chr5_1:2702795-2702814 | None:intergenic | 40.0% |
| GACAGCATTACACTCTTAAG+TGG | - | chr5_1:2702840-2702859 | Msa0710870:CDS | 40.0% | |
| CGAAACAAACCTCAACCATT+GGG | - | chr5_1:2702994-2703013 | Msa0710870:intron | 40.0% | |
| GAGCTGATAATACTCCTCTA+TGG | - | chr5_1:2703036-2703055 | Msa0710870:intron | 40.0% | |
| TTTGTAATGCATGTGGGGTT+AGG | - | chr5_1:2703087-2703106 | Msa0710870:intron | 40.0% | |
| AAAAAGTTGGGCTCTTTGCA+GGG | + | chr5_1:2703145-2703164 | None:intergenic | 40.0% | |
| GCACATTGCTGCAAAAAGTT+GGG | + | chr5_1:2703157-2703176 | None:intergenic | 40.0% | |
| TGCACATTGCTGCAAAAAGT+TGG | + | chr5_1:2703158-2703177 | None:intergenic | 40.0% | |
| ATGTGCATTCTAATTCCCAC+AGG | - | chr5_1:2703171-2703190 | Msa0710870:intron | 40.0% | |
| TAATTCCCACAGGAAAGTAG+TGG | - | chr5_1:2703181-2703200 | Msa0710870:intron | 40.0% | |
| ! | GGTTTGCTTCGATTGTTCTT+TGG | + | chr5_1:2703291-2703310 | None:intergenic | 40.0% |
| ATGATGACATTTCCTCCCAA+TGG | + | chr5_1:2703318-2703337 | None:intergenic | 40.0% | |
| !!! | CAAAGTGTTTTTGGACCATC+GGG | + | chr5_1:2703377-2703396 | None:intergenic | 40.0% |
| CAAAAAGTTGGGCTATTTGC+AGG | + | chr5_1:2703452-2703471 | None:intergenic | 40.0% | |
| GAAGCAGAAGAGAATGAGAA+TGG | - | chr5_1:2703517-2703536 | Msa0710870:CDS | 40.0% | |
| !! | GCCTTCCAAGCATTTTGGAA+AGG | + | chr5_1:2702268-2702287 | None:intergenic | 45.0% |
| !! | TCTGAGATTTTCAGTGCCTG+CGG | - | chr5_1:2702431-2702450 | Msa0710870:CDS | 45.0% |
| GCAAAGAGAGAATCTGTCGT+TGG | + | chr5_1:2702459-2702478 | None:intergenic | 45.0% | |
| ATAGATGTGGCTCCACAACA+CGG | + | chr5_1:2702523-2702542 | None:intergenic | 45.0% | |
| !! | GCTGCTTGTTTTCATGTTCC+AGG | - | chr5_1:2702653-2702672 | Msa0710870:CDS | 45.0% |
| TCCAGGTATCAGAAATGCCA+AGG | + | chr5_1:2702923-2702942 | None:intergenic | 45.0% | |
| ! | GTTGTTTCCACGCGAATTGA+TGG | + | chr5_1:2702947-2702966 | None:intergenic | 45.0% |
| GCGAAACAAACCTCAACCAT+TGG | - | chr5_1:2702993-2703012 | Msa0710870:intron | 45.0% | |
| AACAAACCTCAACCATTGGG+AGG | - | chr5_1:2702997-2703016 | Msa0710870:intron | 45.0% | |
| ATGATGACATTGCCTCCCAA+TGG | + | chr5_1:2703012-2703031 | None:intergenic | 45.0% | |
| !!! | CAAAGTGTTTTTGGACCAGC+AGG | + | chr5_1:2703071-2703090 | None:intergenic | 45.0% |
| ATGCATGTGGGGTTAGGTAT+AGG | - | chr5_1:2703093-2703112 | Msa0710870:intron | 45.0% | |
| CAAAAAGTTGGGCTCTTTGC+AGG | + | chr5_1:2703146-2703165 | None:intergenic | 45.0% | |
| TCCATGTGTCAGAAATGCCA+AGG | + | chr5_1:2703229-2703248 | None:intergenic | 45.0% | |
| ! | GCTGTTTCCACGTGAATTGA+CGG | + | chr5_1:2703253-2703272 | None:intergenic | 45.0% |
| TCGAAGCAAACCTCAACCAT+TGG | - | chr5_1:2703299-2703318 | Msa0710870:intron | 45.0% | |
| CGAAGCAAACCTCAACCATT+GGG | - | chr5_1:2703300-2703319 | Msa0710870:intron | 45.0% | |
| ACATTTCCTCCCAATGGTTG+AGG | + | chr5_1:2703312-2703331 | None:intergenic | 45.0% | |
| GGGAGGAAATGTCATCATTG+TGG | - | chr5_1:2703320-2703339 | Msa0710870:intron | 45.0% | |
| GAGCTGATAATACTCCGCAA+TGG | - | chr5_1:2703342-2703361 | Msa0710870:intron | 45.0% | |
| TTTGTAATGCATGTGGGGTC+AGG | - | chr5_1:2703393-2703412 | Msa0710870:intron | 45.0% | |
| GCATGTCGCTGCAAAAAGTT+GGG | + | chr5_1:2703463-2703482 | None:intergenic | 45.0% | |
| TGCATGTCGCTGCAAAAAGT+TGG | + | chr5_1:2703464-2703483 | None:intergenic | 45.0% | |
| ACATGCATTCTAATGCCCAC+AGG | - | chr5_1:2703477-2703496 | Msa0710870:CDS | 45.0% | |
| TAATGCCCACAGGAAAGTAG+TGG | - | chr5_1:2703487-2703506 | Msa0710870:CDS | 45.0% | |
| CAGAAGAGAATGAGAATGGG+AGG | - | chr5_1:2703521-2703540 | Msa0710870:exon | 45.0% | |
| !! | GCCTTCCAAGCATTTTGGAA+AGG | + | chr5_1:2702268-2702287 | None:intergenic | 45.0% |
| !! | TCTGAGATTTTCAGTGCCTG+CGG | - | chr5_1:2702431-2702450 | Msa0710870:CDS | 45.0% |
| GCAAAGAGAGAATCTGTCGT+TGG | + | chr5_1:2702459-2702478 | None:intergenic | 45.0% | |
| ATAGATGTGGCTCCACAACA+CGG | + | chr5_1:2702523-2702542 | None:intergenic | 45.0% | |
| !! | GCTGCTTGTTTTCATGTTCC+AGG | - | chr5_1:2702653-2702672 | Msa0710870:CDS | 45.0% |
| TCCAGGTATCAGAAATGCCA+AGG | + | chr5_1:2702923-2702942 | None:intergenic | 45.0% | |
| ! | GTTGTTTCCACGCGAATTGA+TGG | + | chr5_1:2702947-2702966 | None:intergenic | 45.0% |
| GCGAAACAAACCTCAACCAT+TGG | - | chr5_1:2702993-2703012 | Msa0710870:intron | 45.0% | |
| AACAAACCTCAACCATTGGG+AGG | - | chr5_1:2702997-2703016 | Msa0710870:intron | 45.0% | |
| ATGATGACATTGCCTCCCAA+TGG | + | chr5_1:2703012-2703031 | None:intergenic | 45.0% | |
| !!! | CAAAGTGTTTTTGGACCAGC+AGG | + | chr5_1:2703071-2703090 | None:intergenic | 45.0% |
| ATGCATGTGGGGTTAGGTAT+AGG | - | chr5_1:2703093-2703112 | Msa0710870:intron | 45.0% | |
| CAAAAAGTTGGGCTCTTTGC+AGG | + | chr5_1:2703146-2703165 | None:intergenic | 45.0% | |
| TCCATGTGTCAGAAATGCCA+AGG | + | chr5_1:2703229-2703248 | None:intergenic | 45.0% | |
| ! | GCTGTTTCCACGTGAATTGA+CGG | + | chr5_1:2703253-2703272 | None:intergenic | 45.0% |
| TCGAAGCAAACCTCAACCAT+TGG | - | chr5_1:2703299-2703318 | Msa0710870:intron | 45.0% | |
| CGAAGCAAACCTCAACCATT+GGG | - | chr5_1:2703300-2703319 | Msa0710870:intron | 45.0% | |
| ACATTTCCTCCCAATGGTTG+AGG | + | chr5_1:2703312-2703331 | None:intergenic | 45.0% | |
| GGGAGGAAATGTCATCATTG+TGG | - | chr5_1:2703320-2703339 | Msa0710870:intron | 45.0% | |
| GAGCTGATAATACTCCGCAA+TGG | - | chr5_1:2703342-2703361 | Msa0710870:intron | 45.0% | |
| TTTGTAATGCATGTGGGGTC+AGG | - | chr5_1:2703393-2703412 | Msa0710870:intron | 45.0% | |
| GCATGTCGCTGCAAAAAGTT+GGG | + | chr5_1:2703463-2703482 | None:intergenic | 45.0% | |
| TGCATGTCGCTGCAAAAAGT+TGG | + | chr5_1:2703464-2703483 | None:intergenic | 45.0% | |
| ACATGCATTCTAATGCCCAC+AGG | - | chr5_1:2703477-2703496 | Msa0710870:CDS | 45.0% | |
| TAATGCCCACAGGAAAGTAG+TGG | - | chr5_1:2703487-2703506 | Msa0710870:CDS | 45.0% | |
| GATGGAGGCTCTTGATTCTG+TGG | - | chr5_1:2702128-2702147 | Msa0710870:CDS | 50.0% | |
| ! | TCACGGCCTTCCAAGCATTT+TGG | + | chr5_1:2702273-2702292 | None:intergenic | 50.0% |
| !! | GCCGCTTGTTTTCATGTTCC+AGG | - | chr5_1:2702587-2702606 | Msa0710870:CDS | 50.0% |
| GTTCCAGGAGTTTGCAGTAG+AGG | - | chr5_1:2702668-2702687 | Msa0710870:CDS | 50.0% | |
| GATCCTCTACTGCAAACTCC+TGG | + | chr5_1:2702674-2702693 | None:intergenic | 50.0% | |
| GTATCAGAAATGCCAAGGCG+AGG | + | chr5_1:2702918-2702937 | None:intergenic | 50.0% | |
| GCCTTGGCATTTCTGATACC+TGG | - | chr5_1:2702919-2702938 | Msa0710870:CDS | 50.0% | |
| ACATTGCCTCCCAATGGTTG+AGG | + | chr5_1:2703006-2703025 | None:intergenic | 50.0% | |
| GGGAGGCAATGTCATCATTG+TGG | - | chr5_1:2703014-2703033 | Msa0710870:intron | 50.0% | |
| AATACTCCTCTATGGCGTGC+AGG | - | chr5_1:2703044-2703063 | Msa0710870:intron | 50.0% | |
| TGTGGGGTTAGGTATAGGTC+TGG | - | chr5_1:2703098-2703117 | Msa0710870:intron | 50.0% | |
| GGCGGTATTCAGGTACAAGT+CGG | + | chr5_1:2703124-2703143 | None:intergenic | 50.0% | |
| ATTCGTAGTAAGCCTCGCCT+TGG | - | chr5_1:2703209-2703228 | Msa0710870:intron | 50.0% | |
| GCCTTGGCATTTCTGACACA+TGG | - | chr5_1:2703225-2703244 | Msa0710870:intron | 50.0% | |
| CATGGAACCGTCAATTCACG+TGG | - | chr5_1:2703243-2703262 | Msa0710870:intron | 50.0% | |
| AGCAAACCTCAACCATTGGG+AGG | - | chr5_1:2703303-2703322 | Msa0710870:intron | 50.0% | |
| ATGCATGTGGGGTCAGGTAT+AGG | - | chr5_1:2703399-2703418 | Msa0710870:intron | 50.0% | |
| GGCGGTATTCAGGTACAAGT+CGG | + | chr5_1:2703124-2703143 | None:intergenic | 50.0% | |
| CTATTTGCAGGGCGGTATTC+AGG | + | chr5_1:2703440-2703459 | None:intergenic | 50.0% | |
| AAGTTGGGCTATTTGCAGGG+CGG | + | chr5_1:2703448-2703467 | None:intergenic | 50.0% | |
| GATGGAGGCTCTTGATTCTG+TGG | - | chr5_1:2702128-2702147 | Msa0710870:CDS | 50.0% | |
| ! | TCACGGCCTTCCAAGCATTT+TGG | + | chr5_1:2702273-2702292 | None:intergenic | 50.0% |
| !! | GCCGCTTGTTTTCATGTTCC+AGG | - | chr5_1:2702587-2702606 | Msa0710870:CDS | 50.0% |
| GTTCCAGGAGTTTGCAGTAG+AGG | - | chr5_1:2702668-2702687 | Msa0710870:CDS | 50.0% | |
| GATCCTCTACTGCAAACTCC+TGG | + | chr5_1:2702674-2702693 | None:intergenic | 50.0% | |
| GTATCAGAAATGCCAAGGCG+AGG | + | chr5_1:2702918-2702937 | None:intergenic | 50.0% | |
| GCCTTGGCATTTCTGATACC+TGG | - | chr5_1:2702919-2702938 | Msa0710870:CDS | 50.0% | |
| ACATTGCCTCCCAATGGTTG+AGG | + | chr5_1:2703006-2703025 | None:intergenic | 50.0% | |
| GGGAGGCAATGTCATCATTG+TGG | - | chr5_1:2703014-2703033 | Msa0710870:intron | 50.0% | |
| AATACTCCTCTATGGCGTGC+AGG | - | chr5_1:2703044-2703063 | Msa0710870:intron | 50.0% | |
| TGTGGGGTTAGGTATAGGTC+TGG | - | chr5_1:2703098-2703117 | Msa0710870:intron | 50.0% | |
| GGCGGTATTCAGGTACAAGT+CGG | + | chr5_1:2703124-2703143 | None:intergenic | 50.0% | |
| ATTCGTAGTAAGCCTCGCCT+TGG | - | chr5_1:2703209-2703228 | Msa0710870:intron | 50.0% | |
| GCCTTGGCATTTCTGACACA+TGG | - | chr5_1:2703225-2703244 | Msa0710870:intron | 50.0% | |
| CATGGAACCGTCAATTCACG+TGG | - | chr5_1:2703243-2703262 | Msa0710870:intron | 50.0% | |
| AGCAAACCTCAACCATTGGG+AGG | - | chr5_1:2703303-2703322 | Msa0710870:intron | 50.0% | |
| ATGCATGTGGGGTCAGGTAT+AGG | - | chr5_1:2703399-2703418 | Msa0710870:intron | 50.0% | |
| GGCGGTATTCAGGTACAAGT+CGG | + | chr5_1:2703124-2703143 | None:intergenic | 50.0% | |
| CTATTTGCAGGGCGGTATTC+AGG | + | chr5_1:2703440-2703459 | None:intergenic | 50.0% | |
| AAGTTGGGCTATTTGCAGGG+CGG | + | chr5_1:2703448-2703467 | None:intergenic | 50.0% | |
| TGAAGTTCCCTGTCCGTGCA+CGG | - | chr5_1:2702874-2702893 | Msa0710870:CDS | 55.0% | |
| ! | CCACGCGAATTGATGGTTCC+AGG | + | chr5_1:2702940-2702959 | None:intergenic | 55.0% |
| CCTGGAACCATCAATTCGCG+TGG | - | chr5_1:2702937-2702956 | Msa0710870:CDS | 55.0% | |
| CTCTTTGCAGGGCGGTATTC+AGG | + | chr5_1:2703134-2703153 | None:intergenic | 55.0% | |
| AAGTTGGGCTCTTTGCAGGG+CGG | + | chr5_1:2703142-2703161 | None:intergenic | 55.0% | |
| GTGTCAGAAATGCCAAGGCG+AGG | + | chr5_1:2703224-2703243 | None:intergenic | 55.0% | |
| AATACTCCGCAATGGCGTGC+AGG | - | chr5_1:2703350-2703369 | Msa0710870:intron | 55.0% | |
| TGTGGGGTCAGGTATAGGTC+TGG | - | chr5_1:2703404-2703423 | Msa0710870:intron | 55.0% | |
| TGAAGTTCCCTGTCCGTGCA+CGG | - | chr5_1:2702874-2702893 | Msa0710870:CDS | 55.0% | |
| ! | CCACGCGAATTGATGGTTCC+AGG | + | chr5_1:2702940-2702959 | None:intergenic | 55.0% |
| CCTGGAACCATCAATTCGCG+TGG | - | chr5_1:2702937-2702956 | Msa0710870:CDS | 55.0% | |
| CTCTTTGCAGGGCGGTATTC+AGG | + | chr5_1:2703134-2703153 | None:intergenic | 55.0% | |
| AAGTTGGGCTCTTTGCAGGG+CGG | + | chr5_1:2703142-2703161 | None:intergenic | 55.0% | |
| GTGTCAGAAATGCCAAGGCG+AGG | + | chr5_1:2703224-2703243 | None:intergenic | 55.0% | |
| AATACTCCGCAATGGCGTGC+AGG | - | chr5_1:2703350-2703369 | Msa0710870:intron | 55.0% | |
| TGTGGGGTCAGGTATAGGTC+TGG | - | chr5_1:2703404-2703423 | Msa0710870:intron | 55.0% | |
| GAATCTGTCGTTGGCACCGC+AGG | + | chr5_1:2702450-2702469 | None:intergenic | 60.0% | |
| ACTTGCTCCGTGCACGGACA+GGG | + | chr5_1:2702884-2702903 | None:intergenic | 60.0% | |
| ! | TGCGAGACTTGCTCCGTGCA+CGG | + | chr5_1:2702890-2702909 | None:intergenic | 60.0% |
| TCTCGCAGTAAGCCTCGCCT+TGG | - | chr5_1:2702903-2702922 | Msa0710870:CDS | 60.0% | |
| GAATCTGTCGTTGGCACCGC+AGG | + | chr5_1:2702450-2702469 | None:intergenic | 60.0% | |
| ACTTGCTCCGTGCACGGACA+GGG | + | chr5_1:2702884-2702903 | None:intergenic | 60.0% | |
| ! | TGCGAGACTTGCTCCGTGCA+CGG | + | chr5_1:2702890-2702909 | None:intergenic | 60.0% |
| TCTCGCAGTAAGCCTCGCCT+TGG | - | chr5_1:2702903-2702922 | Msa0710870:CDS | 60.0% | |
| ! | GACTTGCTCCGTGCACGGAC+AGG | + | chr5_1:2702885-2702904 | None:intergenic | 65.0% |
| GCAGGACCTGCACGCCATAG+AGG | + | chr5_1:2703053-2703072 | None:intergenic | 65.0% | |
| CTATGGCGTGCAGGTCCTGC+TGG | - | chr5_1:2703053-2703072 | Msa0710870:intron | 65.0% | |
| TCGGGACCTGCACGCCATTG+CGG | + | chr5_1:2703359-2703378 | None:intergenic | 65.0% | |
| CAATGGCGTGCAGGTCCCGA+TGG | - | chr5_1:2703359-2703378 | Msa0710870:intron | 65.0% | |
| ! | GACTTGCTCCGTGCACGGAC+AGG | + | chr5_1:2702885-2702904 | None:intergenic | 65.0% |
| GCAGGACCTGCACGCCATAG+AGG | + | chr5_1:2703053-2703072 | None:intergenic | 65.0% | |
| CTATGGCGTGCAGGTCCTGC+TGG | - | chr5_1:2703053-2703072 | Msa0710870:intron | 65.0% | |
| TCGGGACCTGCACGCCATTG+CGG | + | chr5_1:2703359-2703378 | None:intergenic | 65.0% | |
| CAATGGCGTGCAGGTCCCGA+TGG | - | chr5_1:2703359-2703378 | Msa0710870:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 2702127 | 2703541 | 2702127 | ID=Msa0710870;Name=Msa0710870 |
| chr5_1 | mRNA | 2702127 | 2703541 | 2702127 | ID=Msa0710870-mRNA-1;Parent=Msa0710870;Name=Msa0710870-mRNA-1;_AED=0.01;_eAED=0.01;_QI=2|0|0|1|1|0.5|2|0|331 |
| chr5_1 | exon | 2703414 | 2703541 | 2703414 | ID=Msa0710870-mRNA-1:exon:908;Parent=Msa0710870-mRNA-1 |
| chr5_1 | exon | 2702127 | 2702993 | 2702127 | ID=Msa0710870-mRNA-1:exon:907;Parent=Msa0710870-mRNA-1 |
| chr5_1 | five_prime_UTR | 2703540 | 2703541 | 2703540 | ID=Msa0710870-mRNA-1:five_prime_utr;Parent=Msa0710870-mRNA-1 |
| chr5_1 | CDS | 2703414 | 2703539 | 2703414 | ID=Msa0710870-mRNA-1:cds;Parent=Msa0710870-mRNA-1 |
| chr5_1 | CDS | 2702127 | 2702993 | 2702127 | ID=Msa0710870-mRNA-1:cds;Parent=Msa0710870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
