Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713310 | XP_024639117.1 | 81.383 | 188 | 27 | 2 | 1 | 184 | 1 | 184 | 2.70e-102 | 302 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713310 | sp|Q84R94|TI10A_ORYSJ | 43.151 | 146 | 66 | 4 | 36 | 168 | 73 | 214 | 6.11e-28 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713310 | A0A396HMK7 | 75.410 | 183 | 35 | 5 | 1 | 182 | 1 | 174 | 9.20e-90 | 269 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0713310 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713310 | MtrunA17_Chr5g0399861 | 75.410 | 183 | 35 | 5 | 1 | 182 | 1 | 174 | 1.77e-93 | 269 |
| Msa0713310 | MtrunA17_Chr5g0399851 | 91.367 | 139 | 11 | 1 | 31 | 168 | 6 | 144 | 4.86e-92 | 265 |
| Msa0713310 | MtrunA17_Chr5g0399881 | 72.581 | 186 | 35 | 6 | 1 | 184 | 1 | 172 | 1.16e-86 | 252 |
| Msa0713310 | MtrunA17_Chr2g0301131 | 46.012 | 163 | 46 | 6 | 27 | 163 | 99 | 245 | 2.01e-36 | 127 |
| Msa0713310 | MtrunA17_Chr4g0070271 | 35.878 | 131 | 60 | 3 | 40 | 169 | 95 | 202 | 2.03e-19 | 81.6 |
| Msa0713310 | MtrunA17_Chr8g0344481 | 29.221 | 154 | 91 | 3 | 29 | 176 | 88 | 229 | 4.42e-14 | 68.2 |
| Msa0713310 | MtrunA17_Chr4g0069721 | 34.513 | 113 | 64 | 2 | 42 | 144 | 41 | 153 | 2.22e-13 | 65.1 |
| Msa0713310 | MtrunA17_Chr2g0302041 | 29.054 | 148 | 84 | 4 | 25 | 152 | 28 | 174 | 8.50e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713310 | AT1G19180.2 | 44.118 | 136 | 64 | 5 | 39 | 166 | 53 | 184 | 1.15e-26 | 100 |
| Msa0713310 | AT1G19180.1 | 44.118 | 136 | 64 | 5 | 39 | 166 | 119 | 250 | 4.82e-26 | 100 |
| Msa0713310 | AT1G19180.3 | 44.118 | 136 | 64 | 5 | 39 | 166 | 119 | 250 | 4.82e-26 | 100 |
| Msa0713310 | AT1G74950.1 | 39.130 | 138 | 70 | 4 | 39 | 164 | 112 | 247 | 1.80e-23 | 93.6 |
| Msa0713310 | AT1G74950.2 | 39.091 | 110 | 56 | 2 | 39 | 137 | 112 | 221 | 8.62e-18 | 78.2 |
| Msa0713310 | AT5G20900.1 | 36.719 | 128 | 69 | 5 | 32 | 148 | 41 | 167 | 8.51e-14 | 66.6 |
| Msa0713310 | AT1G72450.1 | 38.393 | 112 | 54 | 3 | 45 | 146 | 105 | 211 | 2.08e-13 | 67.0 |
| Msa0713310 | AT1G17380.1 | 30.000 | 150 | 86 | 3 | 11 | 146 | 63 | 207 | 2.18e-13 | 67.0 |
| Msa0713310 | AT1G17380.2 | 32.540 | 126 | 66 | 3 | 35 | 146 | 58 | 178 | 2.45e-13 | 66.6 |
| Msa0713310 | AT1G70700.2 | 35.577 | 104 | 62 | 3 | 46 | 145 | 119 | 221 | 1.41e-11 | 61.6 |
Find 51 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACAAGAGGTTTCAAATTT+AGG | 0.093614 | 5_1:-5447981 | Msa0713310:CDS |
| TCATCCTCACCTGTTATTTA+TGG | 0.150258 | 5_1:-5447626 | Msa0713310:intron |
| TTACACTTCTTAATTAATTA+TGG | 0.165503 | 5_1:+5446114 | None:intergenic |
| CATGACATGAATTCATTAAT+TGG | 0.189235 | 5_1:+5446352 | None:intergenic |
| ATTCATTAATTGGCTTATTA+AGG | 0.221545 | 5_1:+5446362 | None:intergenic |
| TTAATTAAGAAGTGTAATTC+TGG | 0.268982 | 5_1:-5446108 | Msa0713310:three_prime_UTR |
| TATGAACTGGATTGATCATT+AGG | 0.276711 | 5_1:-5446231 | Msa0713310:three_prime_UTR |
| AGCTTCACTTCATCGGTTCT+TGG | 0.292747 | 5_1:-5447475 | Msa0713310:CDS |
| TACACTTCTTAATTAATTAT+GGG | 0.311234 | 5_1:+5446115 | None:intergenic |
| GTTGGGTTACTTGTTTGATA+TGG | 0.313532 | 5_1:+5446388 | None:intergenic |
| TTTCAAATTTAGGAAATTCC+AGG | 0.358166 | 5_1:-5447971 | Msa0713310:intron |
| ATTGGCTTATTAAGGTTAGT+TGG | 0.360045 | 5_1:+5446370 | None:intergenic |
| TTGAGAGTTAGTAGTTCCTT+TGG | 0.375053 | 5_1:+5447736 | None:intergenic |
| TTGGCTTATTAAGGTTAGTT+GGG | 0.404409 | 5_1:+5446371 | None:intergenic |
| TTGTTTGAGGAGGGTGAGAG+TGG | 0.423859 | 5_1:+5448129 | None:intergenic |
| AGTGAAGCTTTCCTAGTCAT+TGG | 0.425048 | 5_1:+5447489 | None:intergenic |
| GAATTTCTAGCAAGAAATGA+TGG | 0.446507 | 5_1:+5447671 | None:intergenic |
| ATGAACTGGATTGATCATTA+GGG | 0.449770 | 5_1:-5446230 | Msa0713310:three_prime_UTR |
| TGGAGCTACATTCTGATTTG+TGG | 0.458315 | 5_1:+5446299 | None:intergenic |
| ATTGTCATTTGTGCACATCT+AGG | 0.463250 | 5_1:+5447833 | None:intergenic |
| TTCATCGGTTCTTGGAGAAA+AGG | 0.463618 | 5_1:-5447467 | Msa0713310:CDS |
| GATATAAAGCTATGTGTTGA+TGG | 0.464536 | 5_1:+5445992 | None:intergenic |
| CATTCTGATTTGTGGTCTTG+TGG | 0.464643 | 5_1:+5446307 | None:intergenic |
| GAAGAATAGTTGTTTGAGGA+GGG | 0.475715 | 5_1:+5448120 | None:intergenic |
| GATTGAAGAATAGTTGTTTG+AGG | 0.479225 | 5_1:+5448116 | None:intergenic |
| TACAATGAAGCTATAAACTA+AGG | 0.483395 | 5_1:-5448155 | None:intergenic |
| TGATACTTGAAGAGAATTGT+TGG | 0.494345 | 5_1:+5447646 | None:intergenic |
| AAGTTAAAGAAACACAGAAC+TGG | 0.498460 | 5_1:+5446279 | None:intergenic |
| AGAGTTAGTAGTTCCTTTGG+AGG | 0.509053 | 5_1:+5447739 | None:intergenic |
| TTGTGGTCTTGTGGTGATTG+TGG | 0.515403 | 5_1:+5446316 | None:intergenic |
| ATTCATGTCATGGCTCTCCT+TGG | 0.527756 | 5_1:-5446341 | Msa0713310:CDS |
| CTAGGAAAGCTTCACTTCAT+CGG | 0.529148 | 5_1:-5447482 | Msa0713310:CDS |
| ACAAAAGAATGAACATATTG+AGG | 0.535773 | 5_1:+5446029 | None:intergenic |
| GAAAATTCAACATAGGTGTA+CGG | 0.542214 | 5_1:+5448027 | None:intergenic |
| TGAAAGCATAGTTATTGTTG+TGG | 0.546555 | 5_1:+5447711 | None:intergenic |
| AATGAAGGCTAATATTAAGA+AGG | 0.546955 | 5_1:-5447861 | Msa0713310:CDS |
| TCTTGGAGAAAAGGAAGGAT+AGG | 0.567398 | 5_1:-5447458 | Msa0713310:intron |
| TGAAGAATAGTTGTTTGAGG+AGG | 0.569497 | 5_1:+5448119 | None:intergenic |
| ACATGTTGAAAATTCAACAT+AGG | 0.573945 | 5_1:+5448020 | None:intergenic |
| TTGTGGTGATTGTGGTGCCA+AGG | 0.574286 | 5_1:+5446324 | None:intergenic |
| TCCTCATCTCTCTCTACAAG+AGG | 0.582418 | 5_1:-5447994 | Msa0713310:CDS |
| TCGGTTCTTGGAGAAAAGGA+AGG | 0.585705 | 5_1:-5447463 | Msa0713310:CDS |
| CAATTAATGAATTCATGTCA+TGG | 0.607012 | 5_1:-5446351 | Msa0713310:CDS |
| TTTACCATAAATAACAGGTG+AGG | 0.612964 | 5_1:+5447622 | None:intergenic |
| ATACAGATTTACCAATGACT+AGG | 0.627962 | 5_1:-5447500 | Msa0713310:intron |
| CTAAATGTTCGTGAATGTTG+TGG | 0.634244 | 5_1:-5446154 | Msa0713310:three_prime_UTR |
| AATTTCTAGCAAGAAATGAT+GGG | 0.637681 | 5_1:+5447672 | None:intergenic |
| ACCTCTTGTAGAGAGAGATG+AGG | 0.644344 | 5_1:+5447993 | None:intergenic |
| TTCTAGCAAGAAATGATGGG+TGG | 0.652275 | 5_1:+5447675 | None:intergenic |
| TGCATATACAGTGAATGTAG+AGG | 0.666288 | 5_1:+5446082 | None:intergenic |
| TGTTGATGGAAGAATTGACA+TGG | 0.698536 | 5_1:+5446006 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGGTAAAAAAAATAATAAT+TGG | - | chr5_1:5446536-5446555 | Msa0713310:intron | 10.0% |
| !!! | AATATGAATTTTTATGTTTT+TGG | + | chr5_1:5447029-5447048 | None:intergenic | 10.0% |
| !!! | AAAAAAATCTAATTTTTTTC+GGG | - | chr5_1:5447065-5447084 | Msa0713310:intron | 10.0% |
| !! | ATGGTAAAAAAAATAATAAT+TGG | - | chr5_1:5446536-5446555 | Msa0713310:intron | 10.0% |
| !!! | AATATGAATTTTTATGTTTT+TGG | + | chr5_1:5447029-5447048 | None:intergenic | 10.0% |
| !!! | AAAAAAATCTAATTTTTTTC+GGG | - | chr5_1:5447065-5447084 | Msa0713310:intron | 10.0% |
| !!! | AAATGACAATTTTTTATGAT+GGG | - | chr5_1:5446323-5446342 | Msa0713310:CDS | 15.0% |
| !!! | TTTTTTTTACCATAAATAAC+AGG | + | chr5_1:5446529-5446548 | None:intergenic | 15.0% |
| !!! | AATTTGACAAAATTTTTAGA+AGG | + | chr5_1:5446826-5446845 | None:intergenic | 15.0% |
| !!! | AAGTTTTTCATCATTTATTT+TGG | - | chr5_1:5446857-5446876 | Msa0713310:intron | 15.0% |
| !!! | TTTTGGGTTTAATATATTTT+TGG | + | chr5_1:5447234-5447253 | None:intergenic | 15.0% |
| !!! | TTAATTCCTATTTCATTTTT+GGG | + | chr5_1:5447250-5447269 | None:intergenic | 15.0% |
| !!! | ATTAATTCCTATTTCATTTT+TGG | + | chr5_1:5447251-5447270 | None:intergenic | 15.0% |
| !! | ATTATCAAATAAAAGTTCAT+CGG | + | chr5_1:5447295-5447314 | None:intergenic | 15.0% |
| !!! | TATTTGATAATTGATAGATT+AGG | - | chr5_1:5447304-5447323 | Msa0713310:intron | 15.0% |
| !!! | AATCTTTTTTTTTTTTTTGC+TGG | - | chr5_1:5447376-5447395 | Msa0713310:intron | 15.0% |
| !! | CAAAAATATCAGTAAAAATA+TGG | + | chr5_1:5447704-5447723 | None:intergenic | 15.0% |
| !! | CTATATATATATATATGAAC+TGG | - | chr5_1:5447899-5447918 | Msa0713310:intron | 15.0% |
| !! | TACACTTCTTAATTAATTAT+GGG | + | chr5_1:5448031-5448050 | None:intergenic | 15.0% |
| !! | TTACACTTCTTAATTAATTA+TGG | + | chr5_1:5448032-5448051 | None:intergenic | 15.0% |
| !!! | AAATGACAATTTTTTATGAT+GGG | - | chr5_1:5446323-5446342 | Msa0713310:CDS | 15.0% |
| !!! | TTTTTTTTACCATAAATAAC+AGG | + | chr5_1:5446529-5446548 | None:intergenic | 15.0% |
| !!! | AATTTGACAAAATTTTTAGA+AGG | + | chr5_1:5446826-5446845 | None:intergenic | 15.0% |
| !!! | AAGTTTTTCATCATTTATTT+TGG | - | chr5_1:5446857-5446876 | Msa0713310:intron | 15.0% |
| !!! | TTTTGGGTTTAATATATTTT+TGG | + | chr5_1:5447234-5447253 | None:intergenic | 15.0% |
| !!! | TTAATTCCTATTTCATTTTT+GGG | + | chr5_1:5447250-5447269 | None:intergenic | 15.0% |
| !!! | ATTAATTCCTATTTCATTTT+TGG | + | chr5_1:5447251-5447270 | None:intergenic | 15.0% |
| !! | ATTATCAAATAAAAGTTCAT+CGG | + | chr5_1:5447295-5447314 | None:intergenic | 15.0% |
| !!! | TATTTGATAATTGATAGATT+AGG | - | chr5_1:5447304-5447323 | Msa0713310:intron | 15.0% |
| !!! | AATCTTTTTTTTTTTTTTGC+TGG | - | chr5_1:5447376-5447395 | Msa0713310:intron | 15.0% |
| !! | CAAAAATATCAGTAAAAATA+TGG | + | chr5_1:5447704-5447723 | None:intergenic | 15.0% |
| !! | CTATATATATATATATGAAC+TGG | - | chr5_1:5447899-5447918 | Msa0713310:intron | 15.0% |
| !! | TACACTTCTTAATTAATTAT+GGG | + | chr5_1:5448031-5448050 | None:intergenic | 15.0% |
| !! | TTACACTTCTTAATTAATTA+TGG | + | chr5_1:5448032-5448051 | None:intergenic | 15.0% |
| !!! | TTATTTTTACAGTGTAATGA+AGG | - | chr5_1:5446267-5446286 | Msa0713310:exon | 20.0% |
| !!! | CAAATGACAATTTTTTATGA+TGG | - | chr5_1:5446322-5446341 | Msa0713310:CDS | 20.0% |
| !! | GAGTTGAATAAAAGTAATTA+AGG | + | chr5_1:5446884-5446903 | None:intergenic | 20.0% |
| !!! | AATGACATTTTTTCAGAAAT+AGG | + | chr5_1:5447112-5447131 | None:intergenic | 20.0% |
| !! | ATTAAACCCAAAAATGAAAT+AGG | - | chr5_1:5447241-5447260 | Msa0713310:intron | 20.0% |
| !! | CAAAAATCGTAATAGAAAAA+AGG | + | chr5_1:5447677-5447696 | None:intergenic | 20.0% |
| !!! | ATTCATTAATTGGCTTATTA+AGG | + | chr5_1:5447784-5447803 | None:intergenic | 20.0% |
| !!! | TTAATTAAGAAGTGTAATTC+TGG | - | chr5_1:5448035-5448054 | Msa0713310:CDS | 20.0% |
| !!! | TTATTTTTACAGTGTAATGA+AGG | - | chr5_1:5446267-5446286 | Msa0713310:exon | 20.0% |
| !!! | CAAATGACAATTTTTTATGA+TGG | - | chr5_1:5446322-5446341 | Msa0713310:CDS | 20.0% |
| !! | GAGTTGAATAAAAGTAATTA+AGG | + | chr5_1:5446884-5446903 | None:intergenic | 20.0% |
| !!! | AATGACATTTTTTCAGAAAT+AGG | + | chr5_1:5447112-5447131 | None:intergenic | 20.0% |
| !! | ATTAAACCCAAAAATGAAAT+AGG | - | chr5_1:5447241-5447260 | Msa0713310:intron | 20.0% |
| !! | CAAAAATCGTAATAGAAAAA+AGG | + | chr5_1:5447677-5447696 | None:intergenic | 20.0% |
| !!! | ATTCATTAATTGGCTTATTA+AGG | + | chr5_1:5447784-5447803 | None:intergenic | 20.0% |
| !!! | TTAATTAAGAAGTGTAATTC+TGG | - | chr5_1:5448035-5448054 | Msa0713310:CDS | 20.0% |
| !!! | ATGATGTTTTGTGCTTTTTT+GGG | + | chr5_1:5446084-5446103 | None:intergenic | 25.0% |
| ! | ACATGTTGAAAATTCAACAT+AGG | + | chr5_1:5446126-5446145 | None:intergenic | 25.0% |
| ! | TTTCAAATTTAGGAAATTCC+AGG | - | chr5_1:5446172-5446191 | Msa0713310:three_prime_UTR | 25.0% |
| ! | CCTACTAAAAAAAATGTTGA+AGG | + | chr5_1:5446232-5446251 | None:intergenic | 25.0% |
| !!! | CCTTCAACATTTTTTTTAGT+AGG | - | chr5_1:5446229-5446248 | Msa0713310:three_prime_UTR | 25.0% |
| ! | AATGAAGGCTAATATTAAGA+AGG | - | chr5_1:5446282-5446301 | Msa0713310:CDS | 25.0% |
| !!! | AATTTCTAGCAAGAAATGAT+GGG | + | chr5_1:5446474-5446493 | None:intergenic | 25.0% |
| ! | TAATTGGATATCTATTTGAG+TGG | - | chr5_1:5446552-5446571 | Msa0713310:intron | 25.0% |
| !!! | CTTGATTTTGATTTGTGTAA+TGG | - | chr5_1:5446580-5446599 | Msa0713310:intron | 25.0% |
| !! | TCTTATTTGTTTGAAAGATC+TGG | + | chr5_1:5446719-5446738 | None:intergenic | 25.0% |
| ! | TACAATCAAACAGTAATTAG+TGG | + | chr5_1:5446752-5446771 | None:intergenic | 25.0% |
| !! | TATGAGTTGACTAAAAAGTA+AGG | - | chr5_1:5447151-5447170 | Msa0713310:intron | 25.0% |
| !! | GTTAATTCTGAAAACTTAAG+AGG | - | chr5_1:5447331-5447350 | Msa0713310:intron | 25.0% |
| !! | AGATTCAATACTTTTGCAAA+AGG | + | chr5_1:5447418-5447437 | None:intergenic | 25.0% |
| ! | ATTATCTGACTTTCAATCAA+TGG | + | chr5_1:5447546-5447565 | None:intergenic | 25.0% |
| ! | ATTGAAATCAACAATTCCTT+TGG | - | chr5_1:5447564-5447583 | Msa0713310:intron | 25.0% |
| ! | AAAAAGGTTATCAATTTGAC+AGG | + | chr5_1:5447661-5447680 | None:intergenic | 25.0% |
| ! | CATGACATGAATTCATTAAT+TGG | + | chr5_1:5447794-5447813 | None:intergenic | 25.0% |
| ! | CAATTAATGAATTCATGTCA+TGG | - | chr5_1:5447792-5447811 | Msa0713310:CDS | 25.0% |
| ! | ACAAAAGAATGAACATATTG+AGG | + | chr5_1:5448117-5448136 | None:intergenic | 25.0% |
| !!! | ATGATGTTTTGTGCTTTTTT+GGG | + | chr5_1:5446084-5446103 | None:intergenic | 25.0% |
| ! | ACATGTTGAAAATTCAACAT+AGG | + | chr5_1:5446126-5446145 | None:intergenic | 25.0% |
| ! | TTTCAAATTTAGGAAATTCC+AGG | - | chr5_1:5446172-5446191 | Msa0713310:three_prime_UTR | 25.0% |
| ! | CCTACTAAAAAAAATGTTGA+AGG | + | chr5_1:5446232-5446251 | None:intergenic | 25.0% |
| !!! | CCTTCAACATTTTTTTTAGT+AGG | - | chr5_1:5446229-5446248 | Msa0713310:three_prime_UTR | 25.0% |
| ! | AATGAAGGCTAATATTAAGA+AGG | - | chr5_1:5446282-5446301 | Msa0713310:CDS | 25.0% |
| !!! | AATTTCTAGCAAGAAATGAT+GGG | + | chr5_1:5446474-5446493 | None:intergenic | 25.0% |
| ! | TAATTGGATATCTATTTGAG+TGG | - | chr5_1:5446552-5446571 | Msa0713310:intron | 25.0% |
| !!! | CTTGATTTTGATTTGTGTAA+TGG | - | chr5_1:5446580-5446599 | Msa0713310:intron | 25.0% |
| !! | TCTTATTTGTTTGAAAGATC+TGG | + | chr5_1:5446719-5446738 | None:intergenic | 25.0% |
| ! | TACAATCAAACAGTAATTAG+TGG | + | chr5_1:5446752-5446771 | None:intergenic | 25.0% |
| !! | TATGAGTTGACTAAAAAGTA+AGG | - | chr5_1:5447151-5447170 | Msa0713310:intron | 25.0% |
| !! | GTTAATTCTGAAAACTTAAG+AGG | - | chr5_1:5447331-5447350 | Msa0713310:intron | 25.0% |
| !! | AGATTCAATACTTTTGCAAA+AGG | + | chr5_1:5447418-5447437 | None:intergenic | 25.0% |
| ! | ATTATCTGACTTTCAATCAA+TGG | + | chr5_1:5447546-5447565 | None:intergenic | 25.0% |
| ! | ATTGAAATCAACAATTCCTT+TGG | - | chr5_1:5447564-5447583 | Msa0713310:intron | 25.0% |
| ! | AAAAAGGTTATCAATTTGAC+AGG | + | chr5_1:5447661-5447680 | None:intergenic | 25.0% |
| ! | CATGACATGAATTCATTAAT+TGG | + | chr5_1:5447794-5447813 | None:intergenic | 25.0% |
| ! | CAATTAATGAATTCATGTCA+TGG | - | chr5_1:5447792-5447811 | Msa0713310:CDS | 25.0% |
| ! | ACAAAAGAATGAACATATTG+AGG | + | chr5_1:5448117-5448136 | None:intergenic | 25.0% |
| GATTGAAGAATAGTTGTTTG+AGG | + | chr5_1:5446030-5446049 | None:intergenic | 30.0% | |
| !! | CATGATGTTTTGTGCTTTTT+TGG | + | chr5_1:5446085-5446104 | None:intergenic | 30.0% |
| GAAAATTCAACATAGGTGTA+CGG | + | chr5_1:5446119-5446138 | None:intergenic | 30.0% | |
| CTACAAGAGGTTTCAAATTT+AGG | - | chr5_1:5446162-5446181 | Msa0713310:three_prime_UTR | 30.0% | |
| TGAAAAAGTCAAGGACATTA+TGG | - | chr5_1:5446375-5446394 | Msa0713310:CDS | 30.0% | |
| ! | TGAAAGCATAGTTATTGTTG+TGG | + | chr5_1:5446435-5446454 | None:intergenic | 30.0% |
| !! | GAATTTCTAGCAAGAAATGA+TGG | + | chr5_1:5446475-5446494 | None:intergenic | 30.0% |
| TGATACTTGAAGAGAATTGT+TGG | + | chr5_1:5446500-5446519 | None:intergenic | 30.0% | |
| TTTACCATAAATAACAGGTG+AGG | + | chr5_1:5446524-5446543 | None:intergenic | 30.0% | |
| ATACAGATTTACCAATGACT+AGG | - | chr5_1:5446643-5446662 | Msa0713310:intron | 30.0% | |
| ! | TTCAATACTTTTGCAAAAGG+AGG | + | chr5_1:5447415-5447434 | None:intergenic | 30.0% |
| ATTTCGGAACAAGAAGTAAA+GGG | + | chr5_1:5447629-5447648 | None:intergenic | 30.0% | |
| TATTTCGGAACAAGAAGTAA+AGG | + | chr5_1:5447630-5447649 | None:intergenic | 30.0% | |
| ! | TTGGCTTATTAAGGTTAGTT+GGG | + | chr5_1:5447775-5447794 | None:intergenic | 30.0% |
| ! | ATTGGCTTATTAAGGTTAGT+TGG | + | chr5_1:5447776-5447795 | None:intergenic | 30.0% |
| AAGTTAAAGAAACACAGAAC+TGG | + | chr5_1:5447867-5447886 | None:intergenic | 30.0% | |
| TATGAACTGGATTGATCATT+AGG | - | chr5_1:5447912-5447931 | Msa0713310:intron | 30.0% | |
| ATGAACTGGATTGATCATTA+GGG | - | chr5_1:5447913-5447932 | Msa0713310:intron | 30.0% | |
| ! | TTTCTCTATTTTGTAGGACT+TGG | - | chr5_1:5447938-5447957 | Msa0713310:intron | 30.0% |
| GATTGAAGAATAGTTGTTTG+AGG | + | chr5_1:5446030-5446049 | None:intergenic | 30.0% | |
| !! | CATGATGTTTTGTGCTTTTT+TGG | + | chr5_1:5446085-5446104 | None:intergenic | 30.0% |
| GAAAATTCAACATAGGTGTA+CGG | + | chr5_1:5446119-5446138 | None:intergenic | 30.0% | |
| CTACAAGAGGTTTCAAATTT+AGG | - | chr5_1:5446162-5446181 | Msa0713310:three_prime_UTR | 30.0% | |
| TGAAAAAGTCAAGGACATTA+TGG | - | chr5_1:5446375-5446394 | Msa0713310:CDS | 30.0% | |
| ! | TGAAAGCATAGTTATTGTTG+TGG | + | chr5_1:5446435-5446454 | None:intergenic | 30.0% |
| !! | GAATTTCTAGCAAGAAATGA+TGG | + | chr5_1:5446475-5446494 | None:intergenic | 30.0% |
| TGATACTTGAAGAGAATTGT+TGG | + | chr5_1:5446500-5446519 | None:intergenic | 30.0% | |
| TTTACCATAAATAACAGGTG+AGG | + | chr5_1:5446524-5446543 | None:intergenic | 30.0% | |
| ATACAGATTTACCAATGACT+AGG | - | chr5_1:5446643-5446662 | Msa0713310:intron | 30.0% | |
| ! | TTCAATACTTTTGCAAAAGG+AGG | + | chr5_1:5447415-5447434 | None:intergenic | 30.0% |
| ATTTCGGAACAAGAAGTAAA+GGG | + | chr5_1:5447629-5447648 | None:intergenic | 30.0% | |
| TATTTCGGAACAAGAAGTAA+AGG | + | chr5_1:5447630-5447649 | None:intergenic | 30.0% | |
| ! | TTGGCTTATTAAGGTTAGTT+GGG | + | chr5_1:5447775-5447794 | None:intergenic | 30.0% |
| ! | ATTGGCTTATTAAGGTTAGT+TGG | + | chr5_1:5447776-5447795 | None:intergenic | 30.0% |
| AAGTTAAAGAAACACAGAAC+TGG | + | chr5_1:5447867-5447886 | None:intergenic | 30.0% | |
| TATGAACTGGATTGATCATT+AGG | - | chr5_1:5447912-5447931 | Msa0713310:intron | 30.0% | |
| ATGAACTGGATTGATCATTA+GGG | - | chr5_1:5447913-5447932 | Msa0713310:intron | 30.0% | |
| ! | TTTCTCTATTTTGTAGGACT+TGG | - | chr5_1:5447938-5447957 | Msa0713310:intron | 30.0% |
| GAAGAATAGTTGTTTGAGGA+GGG | + | chr5_1:5446026-5446045 | None:intergenic | 35.0% | |
| TGAAGAATAGTTGTTTGAGG+AGG | + | chr5_1:5446027-5446046 | None:intergenic | 35.0% | |
| ! | ATTGTCATTTGTGCACATCT+AGG | + | chr5_1:5446313-5446332 | None:intergenic | 35.0% |
| TATTCCAGCTGAAAAAGTCA+AGG | - | chr5_1:5446366-5446385 | Msa0713310:CDS | 35.0% | |
| ! | ATTATGGTCTTTTCCTCCAA+AGG | - | chr5_1:5446391-5446410 | Msa0713310:CDS | 35.0% |
| TTGAGAGTTAGTAGTTCCTT+TGG | + | chr5_1:5446410-5446429 | None:intergenic | 35.0% | |
| ! | TCATCCTCACCTGTTATTTA+TGG | - | chr5_1:5446517-5446536 | Msa0713310:intron | 35.0% |
| ATTTGTTTGAAAGATCTGGC+TGG | + | chr5_1:5446715-5446734 | None:intergenic | 35.0% | |
| TCAACAATTCCTTTGGACAT+AGG | - | chr5_1:5447571-5447590 | Msa0713310:intron | 35.0% | |
| TGACAGGACTCAAACTATTT+CGG | + | chr5_1:5447645-5447664 | None:intergenic | 35.0% | |
| GTTGGGTTACTTGTTTGATA+TGG | + | chr5_1:5447758-5447777 | None:intergenic | 35.0% | |
| !! | AGGGTGTTTCTCTATTTTGT+AGG | - | chr5_1:5447932-5447951 | Msa0713310:intron | 35.0% |
| CTAAATGTTCGTGAATGTTG+TGG | - | chr5_1:5447989-5448008 | Msa0713310:CDS | 35.0% | |
| TGCATATACAGTGAATGTAG+AGG | + | chr5_1:5448064-5448083 | None:intergenic | 35.0% | |
| ! | TGTTGATGGAAGAATTGACA+TGG | + | chr5_1:5448140-5448159 | None:intergenic | 35.0% |
| GAAGAATAGTTGTTTGAGGA+GGG | + | chr5_1:5446026-5446045 | None:intergenic | 35.0% | |
| TGAAGAATAGTTGTTTGAGG+AGG | + | chr5_1:5446027-5446046 | None:intergenic | 35.0% | |
| ! | ATTGTCATTTGTGCACATCT+AGG | + | chr5_1:5446313-5446332 | None:intergenic | 35.0% |
| TATTCCAGCTGAAAAAGTCA+AGG | - | chr5_1:5446366-5446385 | Msa0713310:CDS | 35.0% | |
| ! | ATTATGGTCTTTTCCTCCAA+AGG | - | chr5_1:5446391-5446410 | Msa0713310:CDS | 35.0% |
| TTGAGAGTTAGTAGTTCCTT+TGG | + | chr5_1:5446410-5446429 | None:intergenic | 35.0% | |
| ! | TCATCCTCACCTGTTATTTA+TGG | - | chr5_1:5446517-5446536 | Msa0713310:intron | 35.0% |
| ATTTGTTTGAAAGATCTGGC+TGG | + | chr5_1:5446715-5446734 | None:intergenic | 35.0% | |
| TCAACAATTCCTTTGGACAT+AGG | - | chr5_1:5447571-5447590 | Msa0713310:intron | 35.0% | |
| TGACAGGACTCAAACTATTT+CGG | + | chr5_1:5447645-5447664 | None:intergenic | 35.0% | |
| GTTGGGTTACTTGTTTGATA+TGG | + | chr5_1:5447758-5447777 | None:intergenic | 35.0% | |
| !! | AGGGTGTTTCTCTATTTTGT+AGG | - | chr5_1:5447932-5447951 | Msa0713310:intron | 35.0% |
| CTAAATGTTCGTGAATGTTG+TGG | - | chr5_1:5447989-5448008 | Msa0713310:CDS | 35.0% | |
| TGCATATACAGTGAATGTAG+AGG | + | chr5_1:5448064-5448083 | None:intergenic | 35.0% | |
| ! | TGTTGATGGAAGAATTGACA+TGG | + | chr5_1:5448140-5448159 | None:intergenic | 35.0% |
| !!! | GTTTTGTGCTTTTTTGGGCA+CGG | + | chr5_1:5446079-5446098 | None:intergenic | 40.0% |
| GTAGCAAAAGAACATGTACC+TGG | + | chr5_1:5446193-5446212 | None:intergenic | 40.0% | |
| !!! | ATGTCCTTGACTTTTTCAGC+TGG | + | chr5_1:5446373-5446392 | None:intergenic | 40.0% |
| AGAGTTAGTAGTTCCTTTGG+AGG | + | chr5_1:5446407-5446426 | None:intergenic | 40.0% | |
| ! | TTCTAGCAAGAAATGATGGG+TGG | + | chr5_1:5446471-5446490 | None:intergenic | 40.0% |
| AGTGAAGCTTTCCTAGTCAT+TGG | + | chr5_1:5446657-5446676 | None:intergenic | 40.0% | |
| CTAGGAAAGCTTCACTTCAT+CGG | - | chr5_1:5446661-5446680 | Msa0713310:intron | 40.0% | |
| !! | TTCATCGGTTCTTGGAGAAA+AGG | - | chr5_1:5446676-5446695 | Msa0713310:intron | 40.0% |
| TCTTGGAGAAAAGGAAGGAT+AGG | - | chr5_1:5446685-5446704 | Msa0713310:intron | 40.0% | |
| GCCATCAATTTGTGATCAGT+CGG | - | chr5_1:5447440-5447459 | Msa0713310:intron | 40.0% | |
| CATGCATTTCCTATGTCCAA+AGG | + | chr5_1:5447583-5447602 | None:intergenic | 40.0% | |
| ! | CATTCTGATTTGTGGTCTTG+TGG | + | chr5_1:5447839-5447858 | None:intergenic | 40.0% |
| ! | TGGAGCTACATTCTGATTTG+TGG | + | chr5_1:5447847-5447866 | None:intergenic | 40.0% |
| !!! | GTTTTGTGCTTTTTTGGGCA+CGG | + | chr5_1:5446079-5446098 | None:intergenic | 40.0% |
| GTAGCAAAAGAACATGTACC+TGG | + | chr5_1:5446193-5446212 | None:intergenic | 40.0% | |
| !!! | ATGTCCTTGACTTTTTCAGC+TGG | + | chr5_1:5446373-5446392 | None:intergenic | 40.0% |
| AGAGTTAGTAGTTCCTTTGG+AGG | + | chr5_1:5446407-5446426 | None:intergenic | 40.0% | |
| ! | TTCTAGCAAGAAATGATGGG+TGG | + | chr5_1:5446471-5446490 | None:intergenic | 40.0% |
| AGTGAAGCTTTCCTAGTCAT+TGG | + | chr5_1:5446657-5446676 | None:intergenic | 40.0% | |
| CTAGGAAAGCTTCACTTCAT+CGG | - | chr5_1:5446661-5446680 | Msa0713310:intron | 40.0% | |
| !! | TTCATCGGTTCTTGGAGAAA+AGG | - | chr5_1:5446676-5446695 | Msa0713310:intron | 40.0% |
| TCTTGGAGAAAAGGAAGGAT+AGG | - | chr5_1:5446685-5446704 | Msa0713310:intron | 40.0% | |
| GCCATCAATTTGTGATCAGT+CGG | - | chr5_1:5447440-5447459 | Msa0713310:intron | 40.0% | |
| CATGCATTTCCTATGTCCAA+AGG | + | chr5_1:5447583-5447602 | None:intergenic | 40.0% | |
| ! | CATTCTGATTTGTGGTCTTG+TGG | + | chr5_1:5447839-5447858 | None:intergenic | 40.0% |
| ! | TGGAGCTACATTCTGATTTG+TGG | + | chr5_1:5447847-5447866 | None:intergenic | 40.0% |
| TCCTCATCTCTCTCTACAAG+AGG | - | chr5_1:5446149-5446168 | Msa0713310:three_prime_UTR | 45.0% | |
| ACCTCTTGTAGAGAGAGATG+AGG | + | chr5_1:5446153-5446172 | None:intergenic | 45.0% | |
| !! | AGCTTCACTTCATCGGTTCT+TGG | - | chr5_1:5446668-5446687 | Msa0713310:intron | 45.0% |
| TCGGTTCTTGGAGAAAAGGA+AGG | - | chr5_1:5446680-5446699 | Msa0713310:intron | 45.0% | |
| GCCGACTGATCACAAATTGA+TGG | + | chr5_1:5447444-5447463 | None:intergenic | 45.0% | |
| ATTCATGTCATGGCTCTCCT+TGG | - | chr5_1:5447802-5447821 | Msa0713310:CDS | 45.0% | |
| !! | TTGTGGTCTTGTGGTGATTG+TGG | + | chr5_1:5447830-5447849 | None:intergenic | 45.0% |
| TCCTCATCTCTCTCTACAAG+AGG | - | chr5_1:5446149-5446168 | Msa0713310:three_prime_UTR | 45.0% | |
| ACCTCTTGTAGAGAGAGATG+AGG | + | chr5_1:5446153-5446172 | None:intergenic | 45.0% | |
| !! | AGCTTCACTTCATCGGTTCT+TGG | - | chr5_1:5446668-5446687 | Msa0713310:intron | 45.0% |
| TCGGTTCTTGGAGAAAAGGA+AGG | - | chr5_1:5446680-5446699 | Msa0713310:intron | 45.0% | |
| GCCGACTGATCACAAATTGA+TGG | + | chr5_1:5447444-5447463 | None:intergenic | 45.0% | |
| ATTCATGTCATGGCTCTCCT+TGG | - | chr5_1:5447802-5447821 | Msa0713310:CDS | 45.0% | |
| !! | TTGTGGTCTTGTGGTGATTG+TGG | + | chr5_1:5447830-5447849 | None:intergenic | 45.0% |
| !!! | TAAAAAAATCTAATTTTTTT+CGG | - | chr5_1:5447064-5447083 | Msa0713310:intron | 5.0% |
| !!! | TAAAAAAATCTAATTTTTTT+CGG | - | chr5_1:5447064-5447083 | Msa0713310:intron | 5.0% |
| TTGTTTGAGGAGGGTGAGAG+TGG | + | chr5_1:5446017-5446036 | None:intergenic | 50.0% | |
| ! | TTGTGGTGATTGTGGTGCCA+AGG | + | chr5_1:5447822-5447841 | None:intergenic | 50.0% |
| TTGTTTGAGGAGGGTGAGAG+TGG | + | chr5_1:5446017-5446036 | None:intergenic | 50.0% | |
| ! | TTGTGGTGATTGTGGTGCCA+AGG | + | chr5_1:5447822-5447841 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 5445993 | 5448172 | 5445993 | ID=Msa0713310;Name=Msa0713310 |
| chr5_1 | mRNA | 5445993 | 5448172 | 5445993 | ID=Msa0713310-mRNA-1;Parent=Msa0713310;Name=Msa0713310-mRNA-1;_AED=0.21;_eAED=0.21;_QI=109|1|1|1|1|1|4|289|184 |
| chr5_1 | exon | 5445993 | 5446426 | 5445993 | ID=Msa0713310-mRNA-1:exon:2402;Parent=Msa0713310-mRNA-1 |
| chr5_1 | exon | 5447459 | 5447516 | 5447459 | ID=Msa0713310-mRNA-1:exon:2401;Parent=Msa0713310-mRNA-1 |
| chr5_1 | exon | 5447627 | 5447886 | 5447627 | ID=Msa0713310-mRNA-1:exon:2400;Parent=Msa0713310-mRNA-1 |
| chr5_1 | exon | 5447972 | 5448172 | 5447972 | ID=Msa0713310-mRNA-1:exon:2399;Parent=Msa0713310-mRNA-1 |
| chr5_1 | five_prime_UTR | 5448064 | 5448172 | 5448064 | ID=Msa0713310-mRNA-1:five_prime_utr;Parent=Msa0713310-mRNA-1 |
| chr5_1 | CDS | 5447972 | 5448063 | 5447972 | ID=Msa0713310-mRNA-1:cds;Parent=Msa0713310-mRNA-1 |
| chr5_1 | CDS | 5447627 | 5447886 | 5447627 | ID=Msa0713310-mRNA-1:cds;Parent=Msa0713310-mRNA-1 |
| chr5_1 | CDS | 5447459 | 5447516 | 5447459 | ID=Msa0713310-mRNA-1:cds;Parent=Msa0713310-mRNA-1 |
| chr5_1 | CDS | 5446282 | 5446426 | 5446282 | ID=Msa0713310-mRNA-1:cds;Parent=Msa0713310-mRNA-1 |
| chr5_1 | three_prime_UTR | 5445993 | 5446281 | 5445993 | ID=Msa0713310-mRNA-1:three_prime_utr;Parent=Msa0713310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
