AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0713670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0713670 MtrunA17_Chr5g0400661 87.768 327 20 4 1 320 1 314 0.0 560
Msa0713670 MtrunA17_Chr4g0054571 47.289 332 117 11 1 320 24 309 3.87e-75 234
Msa0713670 MtrunA17_Chr2g0280161 42.238 277 122 9 62 320 74 330 5.72e-52 174
Msa0713670 MtrunA17_Chr4g0049331 44.672 244 95 8 86 320 75 287 1.81e-49 167
Msa0713670 MtrunA17_Chr5g0400621 41.948 267 110 7 61 320 81 309 5.46e-47 161
Msa0713670 MtrunA17_Chr2g0333621 41.532 248 115 8 75 320 72 291 5.76e-47 160
Msa0713670 MtrunA17_Chr8g0336681 38.367 245 130 6 78 320 90 315 3.06e-44 154
Msa0713670 MtrunA17_Chr4g0054561 40.152 264 103 11 64 320 90 305 3.24e-44 154
Msa0713670 MtrunA17_Chr4g0054551 40.613 261 106 9 64 320 90 305 1.08e-43 152
Msa0713670 MtrunA17_Chr4g0054581 35.897 351 180 12 6 320 13 354 1.17e-43 154
Msa0713670 MtrunA17_Chr2g0333641 41.453 234 113 7 87 320 78 287 2.01e-42 149
Msa0713670 MtrunA17_Chr4g0002801 39.754 244 118 5 80 320 93 310 3.52e-42 148
Msa0713670 MtrunA17_Chr4g0002781 39.837 246 119 7 80 320 108 329 3.66e-42 149
Msa0713670 MtrunA17_Chr5g0400671 37.143 280 132 10 59 320 50 303 4.83e-42 148
Msa0713670 MtrunA17_Chr5g0400641 49.689 161 70 2 160 320 1 150 5.62e-42 143
Msa0713670 MtrunA17_Chr2g0307131 45.763 177 83 2 145 320 167 331 9.74e-41 145
Msa0713670 MtrunA17_Chr7g0225901 38.914 221 118 5 102 320 35 240 2.57e-39 139
Msa0713670 MtrunA17_Chr2g0307141 44.970 169 82 2 152 320 178 335 8.94e-39 140
Msa0713670 MtrunA17_Chr6g0468491 36.054 294 139 11 34 320 38 289 9.29e-39 139
Msa0713670 MtrunA17_Chr4g0054621 39.698 199 96 4 126 320 139 317 1.37e-35 131
Msa0713670 MtrunA17_Chr4g0033291 41.538 195 95 3 126 320 129 304 3.40e-35 130
Msa0713670 MtrunA17_Chr6g0468461 30.878 353 161 11 2 320 8 311 2.44e-34 128
Msa0713670 MtrunA17_Chr7g0249811 34.746 236 112 4 85 320 115 308 1.10e-33 126
Msa0713670 MtrunA17_Chr2g0333611 41.667 168 79 4 156 320 44 195 2.58e-33 122
Msa0713670 MtrunA17_Chr4g0033391 40.217 184 91 4 141 320 128 296 4.89e-33 124
Msa0713670 MtrunA17_Chr4g0033281 32.836 335 158 12 7 320 13 301 9.97e-32 121
Msa0713670 MtrunA17_Chr2g0333541 40.606 165 87 3 157 320 94 248 2.10e-26 105
Msa0713670 MtrunA17_Chr7g0233441 39.130 138 63 2 183 320 60 176 4.15e-20 86.7
Msa0713670 MtrunA17_Chr4g0002831 37.662 154 73 5 168 320 53 184 2.85e-19 84.3
Msa0713670 MtrunA17_Chr4g0002851 35.065 154 68 3 168 320 54 176 1.17e-18 82.8
Msa0713670 MtrunA17_Chr7g0275821 32.192 146 80 3 157 302 252 378 1.91e-17 82.4
Msa0713670 MtrunA17_Chr7g0260841 58.065 62 25 1 157 217 355 416 1.71e-16 80.1
Msa0713670 MtrunA17_Chr1g0185621 29.139 151 88 2 157 299 475 614 1.36e-15 77.4
Msa0713670 MtrunA17_Chr3g0131691 28.814 177 111 5 143 314 288 454 9.50e-15 74.7
Msa0713670 MtrunA17_Chr8g0366751 45.833 72 39 0 139 210 444 515 7.64e-14 72.0
Msa0713670 MtrunA17_Chr8g0346161 28.736 174 106 6 123 293 262 420 8.63e-14 71.6
Msa0713670 MtrunA17_Chr7g0252041 25.949 158 116 1 158 314 287 444 2.44e-13 70.5
Msa0713670 MtrunA17_Chr5g0411341 27.136 199 130 4 123 312 463 655 5.31e-13 69.7
Msa0713670 MtrunA17_Chr7g0273081 23.350 197 136 4 130 314 90 283 1.02e-12 67.8
Msa0713670 MtrunA17_Chr8g0365711 24.339 189 120 4 132 317 230 398 3.99e-12 66.6
Msa0713670 MtrunA17_Chr1g0211081 28.495 186 111 7 150 313 310 495 8.20e-12 65.9
Msa0713670 MtrunA17_Chr4g0028071 28.369 141 85 5 159 296 151 278 8.37e-12 65.1
Msa0713670 MtrunA17_Chr7g0270871 44.118 68 38 0 142 209 197 264 8.69e-12 65.5
Msa0713670 MtrunA17_Chr8g0346151 26.347 167 102 5 134 293 259 411 9.08e-12 65.5
Msa0713670 MtrunA17_Chr8g0386921 23.188 207 125 4 117 301 371 565 1.54e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0713670 AT4G37850.2 39.130 322 160 12 9 318 6 303 1.89e-48 165
Msa0713670 AT4G37850.1 39.130 322 160 12 9 318 6 303 1.89e-48 165
Msa0713670 AT2G22750.2 50.829 181 79 3 142 319 108 281 2.08e-42 149
Msa0713670 AT2G22750.1 50.829 181 79 3 142 319 108 281 2.18e-42 149
Msa0713670 AT2G22750.4 50.829 181 79 3 142 319 136 309 4.29e-42 149
Msa0713670 AT2G22750.3 50.829 181 79 3 142 319 136 309 4.77e-42 149
Msa0713670 AT2G22750.5 50.829 181 79 3 142 319 132 305 5.85e-42 148
Msa0713670 AT2G22760.2 46.108 167 80 3 155 320 117 274 4.16e-41 145
Msa0713670 AT2G22760.1 45.509 167 81 3 155 320 117 274 1.54e-40 144
Msa0713670 AT2G22770.1 42.604 169 93 2 156 320 131 299 1.62e-33 125
Msa0713670 AT1G32640.1 31.414 191 108 6 139 319 434 611 1.08e-16 81.3
Msa0713670 AT2G46510.1 47.297 74 39 0 139 212 377 450 1.44e-16 80.9
Msa0713670 AT1G12860.2 29.762 168 102 5 158 320 268 424 1.32e-14 74.3
Msa0713670 AT4G09820.1 28.859 149 75 2 153 301 359 476 1.48e-14 74.7
Msa0713670 AT1G12860.1 29.012 162 100 4 158 314 268 419 2.26e-14 73.9
Msa0713670 AT1G01260.1 39.241 79 48 0 137 215 413 491 3.54e-14 73.6
Msa0713670 AT1G01260.2 39.241 79 48 0 137 215 413 491 3.54e-14 73.6
Msa0713670 AT1G01260.3 39.241 79 48 0 137 215 413 491 3.54e-14 73.6
Msa0713670 AT4G16430.1 40.476 84 46 1 131 214 298 377 1.27e-13 71.6
Msa0713670 AT3G26744.6 28.235 170 106 5 158 320 308 468 1.71e-13 71.2
Msa0713670 AT3G26744.1 27.439 164 104 4 158 314 308 463 2.64e-13 70.9
Msa0713670 AT3G26744.4 27.439 164 104 4 158 314 308 463 2.64e-13 70.9
Msa0713670 AT3G26744.2 27.439 164 104 4 158 314 308 463 2.64e-13 70.9
Msa0713670 AT4G17880.1 28.402 169 106 4 131 299 394 547 2.77e-13 70.9
Msa0713670 AT5G46760.1 30.000 150 84 3 157 299 415 550 4.76e-13 70.1
Msa0713670 AT2G16910.1 28.144 167 87 4 158 302 315 470 1.05e-12 68.9
Msa0713670 AT5G41315.2 26.797 153 100 3 157 297 449 601 1.16e-12 68.9
Msa0713670 AT5G41315.3 26.797 153 100 3 157 297 446 598 1.21e-12 68.9
Msa0713670 AT5G41315.1 26.797 153 100 3 157 297 441 593 1.24e-12 68.9
Msa0713670 AT5G57150.3 30.055 183 112 5 144 316 41 217 1.48e-12 66.2
Msa0713670 AT5G57150.2 29.348 184 114 5 144 317 41 218 1.62e-12 66.2
Msa0713670 AT5G57150.5 28.962 183 114 5 144 316 40 216 1.35e-11 63.5
Msa0713670 AT1G63650.3 26.452 155 93 3 157 297 405 552 1.66e-11 65.5
Msa0713670 AT1G63650.1 26.452 155 93 3 157 297 405 552 1.66e-11 65.5
Msa0713670 AT1G63650.2 26.452 155 93 3 157 297 405 552 1.66e-11 65.5
Msa0713670 AT5G57150.4 29.282 181 112 5 144 314 41 215 1.71e-11 63.9
Msa0713670 AT5G57150.1 28.902 173 108 4 150 313 47 213 3.27e-11 63.2
Msa0713670 AT3G61950.6 30.822 146 86 3 157 299 128 261 5.99e-11 62.8
Msa0713670 AT4G00870.1 28.718 195 105 6 114 293 205 380 7.69e-11 63.2
Msa0713670 AT3G61950.2 30.822 146 86 3 157 299 128 261 8.78e-11 62.4

Find 51 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGTGATCTTGAGCATTTC+TGG 0.145443 5_1:-5931712 None:intergenic
AGTAGTTGTGCATTGCTATT+TGG 0.235575 5_1:+5932254 Msa0713670:CDS
ATGGATAAGGCTTCTGTATT+AGG 0.248877 5_1:+5931909 Msa0713670:CDS
TTCAACATTGGTTCTAGTTT+TGG 0.266677 5_1:-5931555 None:intergenic
CTCTCTTGAATATTGCGTTT+TGG 0.303171 5_1:-5931669 None:intergenic
TCAGACACCTCATCAAATTC+TGG 0.305371 5_1:+5932062 Msa0713670:CDS
TGGATAAGGCTTCTGTATTA+GGG 0.314098 5_1:+5931910 Msa0713670:CDS
ACTCCTTCCAGACTTGAAAA+AGG 0.315242 5_1:+5931791 Msa0713670:CDS
GGGAAATCTTTAACCTCAAA+AGG 0.344535 5_1:+5931621 Msa0713670:CDS
TTGGTCTTAAGTGTCTTTGT+AGG 0.346951 5_1:-5931447 None:intergenic
GACACTCTTGCCTCAACTTC+AGG 0.353101 5_1:-5932134 None:intergenic
CAGATTCTACGTTGTTCCTT+TGG 0.354402 5_1:-5931992 None:intergenic
GACAAGTTGGTTGTGTGATT+TGG 0.403546 5_1:+5931183 Msa0713670:CDS
GATGAAGATTCTCTATCTCT+TGG 0.405403 5_1:-5932220 None:intergenic
CAAAGCAAAGAATGTAAGAA+TGG 0.443123 5_1:-5931515 None:intergenic
GATTCAACTTTGAAACCAAA+AGG 0.445350 5_1:+5931582 Msa0713670:CDS
GGAATTGCTCATAGTGTTTG+AGG 0.462284 5_1:-5931397 None:intergenic
GTACCCTATGTTTGAAGGGT+TGG 0.464961 5_1:-5931466 None:intergenic
ACTTCAGGCAGTGACCTACT+TGG 0.469914 5_1:-5932119 None:intergenic
GAAGGGTACCCTATGTTTGA+AGG 0.486283 5_1:-5931471 None:intergenic
CATTTGGATGTAGATGGATA+AGG 0.492545 5_1:+5931896 Msa0713670:intron
TCACTGCAACAATCTTTCTC+TGG 0.493142 5_1:+5931351 Msa0713670:CDS
AAGACCAACCCTTCAAACAT+AGG 0.497958 5_1:+5931462 Msa0713670:CDS
ATATCATACCTCAGCAATGA+TGG 0.498759 5_1:-5932297 None:intergenic
AAAGCAAAGAATGTAAGAAT+GGG 0.507449 5_1:-5931514 None:intergenic
GTTGAATCAATGTTCAACAT+TGG 0.511485 5_1:-5931567 None:intergenic
ACCTCATCAAATTCTGGCTA+TGG 0.514888 5_1:+5932068 Msa0713670:CDS
GTTAAATTGCAAGACAGCTA+TGG 0.515196 5_1:-5931110 None:intergenic
TTTCTTGAAGCTGTTTCACA+TGG 0.520049 5_1:-5931944 None:intergenic
AAGATTGTTGCAGTGACGTA+GGG 0.528270 5_1:-5931344 None:intergenic
AACTTTGAAACCAAAAGGCA+AGG 0.533663 5_1:+5931587 Msa0713670:CDS
CACTCTTATGTTTCTCACAA+TGG 0.534111 5_1:-5932181 None:intergenic
GGAAATCTTTAACCTCAAAA+GGG 0.543386 5_1:+5931622 Msa0713670:CDS
AACACTATGAGCAATTCCTC+AGG 0.557225 5_1:+5931402 Msa0713670:CDS
TGACATCAAACGATGAGTCA+TGG 0.561998 5_1:+5931161 Msa0713670:CDS
AGACCAACCCTTCAAACATA+GGG 0.575956 5_1:+5931463 Msa0713670:CDS
AAGGGTACCCTATGTTTGAA+GGG 0.581486 5_1:-5931470 None:intergenic
ACGATGAGTCATGGACAAGT+TGG 0.581739 5_1:+5931170 Msa0713670:CDS
AAAGATTGTTGCAGTGACGT+AGG 0.596812 5_1:-5931345 None:intergenic
TAGGTCACTGCCTGAAGTTG+AGG 0.613765 5_1:+5932124 Msa0713670:CDS
CTGCAACAATCTTTCTCTGG+TGG 0.629704 5_1:+5931354 Msa0713670:CDS
TTGAGGTTGTGTGAGAGCAA+TGG 0.632047 5_1:-5931380 None:intergenic
AAGGAACAACGTAGAATCTG+TGG 0.639673 5_1:+5931995 Msa0713670:CDS
GAGATGTTAACTGCTTTGAG+AGG 0.640656 5_1:+5931424 Msa0713670:CDS
TATTGGAGGAAAAGAACCAA+AGG 0.643739 5_1:+5931976 Msa0713670:CDS
ACCATAGCCAGAATTTGATG+AGG 0.651808 5_1:-5932069 None:intergenic
GGATAAGGCTTCTGTATTAG+GGG 0.656232 5_1:+5931911 Msa0713670:CDS
TGACATAACCATCATTGCTG+AGG 0.668356 5_1:+5932289 Msa0713670:CDS
CTCACACCTCAAAACCAAGT+AGG 0.668534 5_1:+5932105 Msa0713670:CDS
AGATTGTTGCAGTGACGTAG+GGG 0.677651 5_1:-5931343 None:intergenic
AAAGCAGTTAACATCTCCTG+AGG 0.687587 5_1:-5931418 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAATGATACTAATTAA+TGG + chr5_1:5931861-5931880 Msa0713670:intron 10.0%
!!! AATTTTGTTTGCACTTTTTT+TGG + chr5_1:5931237-5931256 Msa0713670:intron 20.0%
!!! TTGATGATTTTGTAATCTTC+TGG - chr5_1:5931309-5931328 None:intergenic 25.0%
!!! AATCTTTTTTTGGTAAGGAA+GGG - chr5_1:5931491-5931510 None:intergenic 25.0%
! AAAGCAAAGAATGTAAGAAT+GGG - chr5_1:5931517-5931536 None:intergenic 25.0%
! TCCTTAGAAAACCAAAAAAA+GGG + chr5_1:5931645-5931664 Msa0713670:CDS 25.0%
! ATGGTTACTCATTAATCATT+TGG + chr5_1:5931880-5931899 Msa0713670:intron 25.0%
! ATTAATCATTTGGATGTAGA+TGG + chr5_1:5931890-5931909 Msa0713670:intron 25.0%
! TCAAGAAAAAGTGAAACTAT+TGG + chr5_1:5931959-5931978 Msa0713670:CDS 25.0%
AAAGTGCAAACAAAATTGTG+TGG - chr5_1:5931234-5931253 None:intergenic 30.0%
!!! GAATCTTTTTTTGGTAAGGA+AGG - chr5_1:5931492-5931511 None:intergenic 30.0%
!!! GGAAGAATCTTTTTTTGGTA+AGG - chr5_1:5931496-5931515 None:intergenic 30.0%
!!! GAATGGGAAGAATCTTTTTT+TGG - chr5_1:5931501-5931520 None:intergenic 30.0%
CAAAGCAAAGAATGTAAGAA+TGG - chr5_1:5931518-5931537 None:intergenic 30.0%
!!! TTCAACATTGGTTCTAGTTT+TGG - chr5_1:5931558-5931577 None:intergenic 30.0%
GTTGAATCAATGTTCAACAT+TGG - chr5_1:5931570-5931589 None:intergenic 30.0%
!! GATTCAACTTTGAAACCAAA+AGG + chr5_1:5931582-5931601 Msa0713670:CDS 30.0%
! TGATTAAAAACCTTGCCTTT+TGG - chr5_1:5931600-5931619 None:intergenic 30.0%
! AAAGGCAAGGTTTTTAATCA+TGG + chr5_1:5931600-5931619 Msa0713670:CDS 30.0%
! AAGGCAAGGTTTTTAATCAT+GGG + chr5_1:5931601-5931620 Msa0713670:CDS 30.0%
GGAAATCTTTAACCTCAAAA+GGG + chr5_1:5931622-5931641 Msa0713670:CDS 30.0%
GTCCTTAGAAAACCAAAAAA+AGG + chr5_1:5931644-5931663 Msa0713670:CDS 30.0%
!!! TCCCTTTTTTTGGTTTTCTA+AGG - chr5_1:5931649-5931668 None:intergenic 30.0%
!!! AATTGAACCTTTTTCAAGTC+TGG - chr5_1:5931801-5931820 None:intergenic 30.0%
AGAAAAAGTGAAACTATTGG+AGG + chr5_1:5931962-5931981 Msa0713670:CDS 30.0%
GTTAAATTGCAAGACAGCTA+TGG - chr5_1:5931113-5931132 None:intergenic 35.0%
!! TTGGTCTTAAGTGTCTTTGT+AGG - chr5_1:5931450-5931469 None:intergenic 35.0%
!! AACTTTGAAACCAAAAGGCA+AGG + chr5_1:5931587-5931606 Msa0713670:CDS 35.0%
GGGAAATCTTTAACCTCAAA+AGG + chr5_1:5931621-5931640 Msa0713670:CDS 35.0%
! CTCTCTTGAATATTGCGTTT+TGG - chr5_1:5931672-5931691 None:intergenic 35.0%
TATGTGATCTTGAGCATTTC+TGG - chr5_1:5931715-5931734 None:intergenic 35.0%
CATTTGGATGTAGATGGATA+AGG + chr5_1:5931896-5931915 Msa0713670:intron 35.0%
ATGGATAAGGCTTCTGTATT+AGG + chr5_1:5931909-5931928 Msa0713670:CDS 35.0%
TGGATAAGGCTTCTGTATTA+GGG + chr5_1:5931910-5931929 Msa0713670:CDS 35.0%
! TTTCTTGAAGCTGTTTCACA+TGG - chr5_1:5931947-5931966 None:intergenic 35.0%
TATTGGAGGAAAAGAACCAA+AGG + chr5_1:5931976-5931995 Msa0713670:CDS 35.0%
CACTCTTATGTTTCTCACAA+TGG - chr5_1:5932184-5932203 None:intergenic 35.0%
GATGAAGATTCTCTATCTCT+TGG - chr5_1:5932223-5932242 None:intergenic 35.0%
! AGTAGTTGTGCATTGCTATT+TGG + chr5_1:5932254-5932273 Msa0713670:CDS 35.0%
! GATGGTTATGTCAAGTTTTG+TGG - chr5_1:5932282-5932301 None:intergenic 35.0%
TGACATCAAACGATGAGTCA+TGG + chr5_1:5931161-5931180 Msa0713670:CDS 40.0%
!! GACAAGTTGGTTGTGTGATT+TGG + chr5_1:5931183-5931202 Msa0713670:CDS 40.0%
AAACTCTTGTGACTTTCCAC+AGG + chr5_1:5931281-5931300 Msa0713670:intron 40.0%
!! TTGTAATCTTCTGGTTCCTG+TGG - chr5_1:5931300-5931319 None:intergenic 40.0%
AAGATTGTTGCAGTGACGTA+GGG - chr5_1:5931347-5931366 None:intergenic 40.0%
AAAGATTGTTGCAGTGACGT+AGG - chr5_1:5931348-5931367 None:intergenic 40.0%
TCACTGCAACAATCTTTCTC+TGG + chr5_1:5931351-5931370 Msa0713670:CDS 40.0%
GGAATTGCTCATAGTGTTTG+AGG - chr5_1:5931400-5931419 None:intergenic 40.0%
AACACTATGAGCAATTCCTC+AGG + chr5_1:5931402-5931421 Msa0713670:CDS 40.0%
AAAGCAGTTAACATCTCCTG+AGG - chr5_1:5931421-5931440 None:intergenic 40.0%
! GAGATGTTAACTGCTTTGAG+AGG + chr5_1:5931424-5931443 Msa0713670:CDS 40.0%
AAGACCAACCCTTCAAACAT+AGG + chr5_1:5931462-5931481 Msa0713670:CDS 40.0%
AGACCAACCCTTCAAACATA+GGG + chr5_1:5931463-5931482 Msa0713670:CDS 40.0%
!! AAGGGTACCCTATGTTTGAA+GGG - chr5_1:5931473-5931492 None:intergenic 40.0%
!! GTTTTCTAAGGACCCTTTTG+AGG - chr5_1:5931637-5931656 None:intergenic 40.0%
!! TGCGTTTTGGTCCCTTTTTT+TGG - chr5_1:5931659-5931678 None:intergenic 40.0%
ACTCCTTCCAGACTTGAAAA+AGG + chr5_1:5931791-5931810 Msa0713670:CDS 40.0%
!!! GAACCTTTTTCAAGTCTGGA+AGG - chr5_1:5931797-5931816 None:intergenic 40.0%
GGATAAGGCTTCTGTATTAG+GGG + chr5_1:5931911-5931930 Msa0713670:CDS 40.0%
CAGATTCTACGTTGTTCCTT+TGG - chr5_1:5931995-5932014 None:intergenic 40.0%
AAGGAACAACGTAGAATCTG+TGG + chr5_1:5931995-5932014 Msa0713670:CDS 40.0%
TCAGACACCTCATCAAATTC+TGG + chr5_1:5932062-5932081 Msa0713670:CDS 40.0%
! ACCTCATCAAATTCTGGCTA+TGG + chr5_1:5932068-5932087 Msa0713670:CDS 40.0%
ACCATAGCCAGAATTTGATG+AGG - chr5_1:5932072-5932091 None:intergenic 40.0%
TGACATAACCATCATTGCTG+AGG + chr5_1:5932289-5932308 Msa0713670:CDS 40.0%
ACGATGAGTCATGGACAAGT+TGG + chr5_1:5931170-5931189 Msa0713670:CDS 45.0%
AGATTGTTGCAGTGACGTAG+GGG - chr5_1:5931346-5931365 None:intergenic 45.0%
CTGCAACAATCTTTCTCTGG+TGG + chr5_1:5931354-5931373 Msa0713670:CDS 45.0%
TTGAGGTTGTGTGAGAGCAA+TGG - chr5_1:5931383-5931402 None:intergenic 45.0%
GTACCCTATGTTTGAAGGGT+TGG - chr5_1:5931469-5931488 None:intergenic 45.0%
!! GAAGGGTACCCTATGTTTGA+AGG - chr5_1:5931474-5931493 None:intergenic 45.0%
CTCACACCTCAAAACCAAGT+AGG + chr5_1:5932105-5932124 Msa0713670:CDS 45.0%
!!! CAGTGACCTACTTGGTTTTG+AGG - chr5_1:5932114-5932133 None:intergenic 45.0%
ACTTCAGGCAGTGACCTACT+TGG - chr5_1:5932122-5932141 None:intergenic 50.0%
TAGGTCACTGCCTGAAGTTG+AGG + chr5_1:5932124-5932143 Msa0713670:CDS 50.0%
GACACTCTTGCCTCAACTTC+AGG - chr5_1:5932137-5932156 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 5931098 5932316 5931098 ID=Msa0713670;Name=Msa0713670
chr5_1 mRNA 5931098 5932316 5931098 ID=Msa0713670-mRNA-1;Parent=Msa0713670;Name=Msa0713670-mRNA-1;_AED=0.09;_eAED=0.09;_QI=62|1|0.66|1|1|1|3|0|320
chr5_1 exon 5931098 5931204 5931098 ID=Msa0713670-mRNA-1:exon:2573;Parent=Msa0713670-mRNA-1
chr5_1 exon 5931303 5931812 5931303 ID=Msa0713670-mRNA-1:exon:2574;Parent=Msa0713670-mRNA-1
chr5_1 exon 5931909 5932316 5931909 ID=Msa0713670-mRNA-1:exon:2575;Parent=Msa0713670-mRNA-1
chr5_1 five_prime_UTR 5931098 5931159 5931098 ID=Msa0713670-mRNA-1:five_prime_utr;Parent=Msa0713670-mRNA-1
chr5_1 CDS 5931160 5931204 5931160 ID=Msa0713670-mRNA-1:cds;Parent=Msa0713670-mRNA-1
chr5_1 CDS 5931303 5931812 5931303 ID=Msa0713670-mRNA-1:cds;Parent=Msa0713670-mRNA-1
chr5_1 CDS 5931909 5932316 5931909 ID=Msa0713670-mRNA-1:cds;Parent=Msa0713670-mRNA-1
Gene Sequence

>Msa0713670

ATGACATCAAACGATGAGTCATGGACAAGTTGGTTGTGTGATTTGGAACCAGAAGATTACAAAATCATCAATGACATTAACATAGCCCCTACGTCACTGCAACAATCTTTCTCTGGTGGTAGCCATTGCTCTCACACAACCTCAAACACTATGAGCAATTCCTCAGGAGATGTTAACTGCTTTGAGAGGCCTACAAAGACACTTAAGACCAACCCTTCAAACATAGGGTACCCTTCCTTACCAAAAAAAGATTCTTCCCATTCTTACATTCTTTGCTTTGACAATGAGAATCAAGAACCAAAACTAGAACCAATGTTGAACATTGATTCAACTTTGAAACCAAAAGGCAAGGTTTTTAATCATGGGAAATCTTTAACCTCAAAAGGGTCCTTAGAAAACCAAAAAAAGGGACCAAAACGCAATATTCAAGAGAGCAAGAAGACTGATTCAGCTGCCAGAAATGCTCAAGATCACATACTTGCTGAGAGAAAGAGAAGAGAAAAAATTAGTCAAAAGTTCATAGCTCTTTCAGCACTCCTTCCAGACTTGAAAAAGATGGATAAGGCTTCTGTATTAGGGGATGCTATAAACCATGTGAAACAGCTTCAAGAAAAAGTGAAACTATTGGAGGAAAAGAACCAAAGGAACAACGTAGAATCTGTGGTATATGTTGAGAAGACAAAGTCATGTTCTTCAGATGAAGATGTTTCAGACACCTCATCAAATTCTGGCTATGGTAATTGTTGTCACACTCACACCTCAAAACCAAGTAGGTCACTGCCTGAAGTTGAGGCAAGAGTGTCAGAGAAAAACGTGCTGATTCGTGTCCATTGTGAGAAACATAAGAGTGTATTGATGAACATAATCCAAGAGATAGAGAATCTTCATCTATCAGTTACTAGTAGTTGTGCATTGCTATTTGGAACCACAAAACTTGACATAACCATCATTGCTGAGGTATGA
Protein sequence

>Msa0713670

MTSNDESWTSWLCDLEPEDYKIINDINIAPTSLQQSFSGGSHCSHTTSNTMSNSSGDVNCFERPTKTLKTNPSNIGYPSLPKKDSSHSYILCFDNENQEPKLEPMLNIDSTLKPKGKVFNHGKSLTSKGSLENQKKGPKRNIQESKKTDSAARNAQDHILAERKRREKISQKFIALSALLPDLKKMDKASVLGDAINHVKQLQEKVKLLEEKNQRNNVESVVYVEKTKSCSSDEDVSDTSSNSGYGNCCHTHTSKPSRSLPEVEARVSEKNVLIRVHCEKHKSVLMNIIQEIENLHLSVTSSCALLFGTTKLDITIIAEV*