AlfalfaGEDB | Msa0714070

M. sativa cultivar zhongmu-4 / Msa0714070

KEGG: K03097
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0023052 GO:0031974 GO:0031981 GO:0040008 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0065007 GO:0070013 GO:2000026 GO:2000028 GO:2000241
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714070	XP_003611611.2	86.058	416	8	3	1	368	1	414	0.0	717

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714070	sp\|O64816\|CSK2P_ARATH	74.713	348	40	2	66	365	81	428	0.0	525

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714070	G7K3U9	86.058	416	8	3	1	368	1	414	0.0	717

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714070	MtrunA17_Chr5g0401371	86.058	416	8	3	1	368	1	414	0.0	717
Msa0714070	MtrunA17_Chr4g0053951	65.893	431	72	7	1	368	1	419	0.0	535
Msa0714070	MtrunA17_Chr4g0053821	68.132	364	66	3	53	368	27	388	3.34e-174	490
Msa0714070	MtrunA17_Chr4g0002001	30.909	275	162	7	113	361	38	310	1.64e-39	142
Msa0714070	MtrunA17_Chr1g0187371	31.449	283	175	7	90	355	29	309	2.70e-38	139
Msa0714070	MtrunA17_Chr8g0350311	31.429	280	156	10	113	363	160	432	4.57e-37	139
Msa0714070	MtrunA17_Chr8g0387401	31.923	260	148	6	121	360	94	344	5.33e-37	137
Msa0714070	MtrunA17_Chr2g0320011	32.971	276	152	12	105	358	112	376	3.10e-34	130
Msa0714070	MtrunA17_Chr2g0284091	35.233	193	108	5	178	358	141	328	5.36e-34	129
Msa0714070	MtrunA17_Chr4g0051261	31.660	259	159	8	113	358	38	291	2.44e-33	125

Showing 1 to 10 of 135 entries

Previous1 2 3 4 5…14Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714070	AT2G23070.1	74.713	348	40	2	66	365	81	428	0.0	525
Msa0714070	AT5G67380.2	79.734	301	46	1	83	368	76	376	0.0	510
Msa0714070	AT3G50000.1	70.690	348	49	3	68	367	60	402	8.03e-173	487
Msa0714070	AT5G67380.1	71.557	334	47	2	83	368	76	409	9.16e-171	482
Msa0714070	AT2G23080.1	71.601	331	46	2	85	367	2	332	1.15e-166	469
Msa0714070	AT2G23080.2	69.697	297	42	2	85	333	2	298	6.23e-143	407
Msa0714070	AT1G20930.1	29.073	313	201	8	66	362	7	314	2.13e-39	142
Msa0714070	AT1G76540.1	31.206	282	177	7	90	355	25	305	1.37e-38	140
Msa0714070	AT3G48750.1	35.115	262	140	10	113	355	38	288	1.26e-36	134
Msa0714070	AT2G30980.1	33.091	275	153	9	105	358	96	360	1.63e-36	137

Showing 1 to 10 of 331 entries

Previous1 2 3 4 5…34Next

Find 119 sgRNAs with CRISPR-Local

Find 532 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAATCACCGAGACC+TGG	0.556560	5_1:+6652175	None:intergenic
AAAGGGTGGTGGAAAGTTGG+TGG	0.560287	5_1:+6659430	None:intergenic
AAAGTTGCTTGACATTGTTA+GGG	0.545644	5_1:-6657529	Msa0714070:CDS
AAGATATTGCAAAATCTCTG+CGG	0.727499	5_1:-6657567	Msa0714070:CDS
AAGCGACTGAGAACGGAAAA+GGG	0.565229	5_1:+6659413	None:intergenic
AAGCTTTGCCTGATAGACTG+GGG	0.722764	5_1:-6655589	Msa0714070:CDS
AATATCCTCCGCCGCCGCCG+CGG	0.576357	5_1:-6659358	Msa0714070:CDS
AATCCCTCGCTGTTCAGTGG+GGG	0.652261	5_1:-6659220	Msa0714070:intron
ACACATTCAAATACAAGGCT+TGG	0.433688	5_1:+6657489	None:intergenic
ACACTAGTGTTTGCTGTAAC+TGG	0.303039	5_1:-6652099	Msa0714070:three_prime_UTR

Showing 1 to 10 of 119 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGGAAATTGAATGATGAGTT+CGG	+	chr5_1:6652101-6652120	None:intergenic	30.0%
TCATAATCCCAATATTCCTT+AGG	+	chr5_1:6652336-6652355	None:intergenic	30.0%
AAATGATTAACGGTGTGAAT+TGG	+	chr5_1:6652405-6652424	None:intergenic	30.0%
CAAAAATAAGCCAATCCTTA+CGG	-	chr5_1:6652863-6652882	Msa0714070:intron	30.0%
TTTCATTACCTATCTTGAAG+AGG	+	chr5_1:6652958-6652977	None:intergenic	30.0%
CTATTGAAAAGCAACAATCA+TGG	+	chr5_1:6653109-6653128	None:intergenic	30.0%
AGGATGTGTATGAGTTTATA+TGG	-	chr5_1:6653203-6653222	Msa0714070:intron	30.0%
TAGTATGCTCAATTGTACTT+TGG	-	chr5_1:6653313-6653332	Msa0714070:intron	30.0%
AGCTAAAACTAGAGTTAAAG+GGG	+	chr5_1:6653609-6653628	None:intergenic	30.0%
ACATCCGAACCAAAAATATA+AGG	+	chr5_1:6653804-6653823	None:intergenic	30.0%

Showing 1 to 10 of 532 entries

Previous1 2 3 4 5…54Next

Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	6652042	6659555	6652042	ID=Msa0714070;Name=Msa0714070
chr5_1	mRNA	6652042	6659555	6652042	ID=Msa0714070-mRNA-1;Parent=Msa0714070;Name=Msa0714070-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0.77\|0.7\|1\|1\|1\|10\|293\|368
chr5_1	exon	6652042	6652394	6652042	ID=Msa0714070-mRNA-1:exon:2792;Parent=Msa0714070-mRNA-1
chr5_1	exon	6652753	6652821	6652753	ID=Msa0714070-mRNA-1:exon:2791;Parent=Msa0714070-mRNA-1
chr5_1	exon	6652907	6652970	6652907	ID=Msa0714070-mRNA-1:exon:2790;Parent=Msa0714070-mRNA-1
chr5_1	exon	6653333	6653370	6653333	ID=Msa0714070-mRNA-1:exon:2789;Parent=Msa0714070-mRNA-1
chr5_1	exon	6654280	6654345	6654280	ID=Msa0714070-mRNA-1:exon:2788;Parent=Msa0714070-mRNA-1
chr5_1	exon	6654528	6654618	6654528	ID=Msa0714070-mRNA-1:exon:2787;Parent=Msa0714070-mRNA-1
chr5_1	exon	6655535	6655692	6655535	ID=Msa0714070-mRNA-1:exon:2786;Parent=Msa0714070-mRNA-1
chr5_1	exon	6657410	6657604	6657410	ID=Msa0714070-mRNA-1:exon:2785;Parent=Msa0714070-mRNA-1
chr5_1	exon	6659103	6659133	6659103	ID=Msa0714070-mRNA-1:exon:2784;Parent=Msa0714070-mRNA-1
chr5_1	exon	6659221	6659555	6659221	ID=Msa0714070-mRNA-1:exon:2783;Parent=Msa0714070-mRNA-1
chr5_1	CDS	6659221	6659555	6659221	ID=Msa0714070-mRNA-1:cds;Parent=Msa0714070-mRNA-1
chr5_1	CDS	6659103	6659133	6659103	ID=Msa0714070-mRNA-1:cds;Parent=Msa0714070-mRNA-1
chr5_1	CDS	6657410	6657604	6657410	ID=Msa0714070-mRNA-1:cds;Parent=Msa0714070-mRNA-1
chr5_1	CDS	6655535	6655692	6655535	ID=Msa0714070-mRNA-1:cds;Parent=Msa0714070-mRNA-1
chr5_1	CDS	6654528	6654618	6654528	ID=Msa0714070-mRNA-1:cds;Parent=Msa0714070-mRNA-1
chr5_1	CDS	6654280	6654345	6654280	ID=Msa0714070-mRNA-1:cds;Parent=Msa0714070-mRNA-1
chr5_1	CDS	6653333	6653370	6653333	ID=Msa0714070-mRNA-1:cds;Parent=Msa0714070-mRNA-1
chr5_1	CDS	6652907	6652970	6652907	ID=Msa0714070-mRNA-1:cds;Parent=Msa0714070-mRNA-1
chr5_1	CDS	6652753	6652821	6652753	ID=Msa0714070-mRNA-1:cds;Parent=Msa0714070-mRNA-1
chr5_1	CDS	6652335	6652394	6652335	ID=Msa0714070-mRNA-1:cds;Parent=Msa0714070-mRNA-1
chr5_1	three_prime_UTR	6652042	6652334	6652042	ID=Msa0714070-mRNA-1:three_prime_utr;Parent=Msa0714070-mRNA-1

Gene Sequence

>Msa0714070

ATGGCCATTAGGCCATTCCAATCCACACTATCGCTCCATCGATTCTTCTCTCTTTTCCGAACTCATCATTCAATTTCCTCCTCCGCCACCACCACCACCACCACCACCAACTTTCCACCACCCTTTTCCGTTCTCAGTCGCTTCGCAACTTCGTTCTCACAACCTCATCGCCCTCAATATCCTCCGCCGCCGCCGCGGCCCGACACTCTGGCTCAACGAATCGGAAAATCCATTCGCCGCCCTGGCGCTTCCTCTAAGGCCAGAATTTACGCTGATGTCAATGTTGTTCGACCTAAGGAATATTGGGATTATGAATCCCTCGCTGTTCAGTGGGGGGAACAAGATGATTACCAGGTCTTGAAGAAGATAAAGAGGGAGATCAAGATATTGCAAAATCTCTGCGGAGGACCCAATATTGTAAAGTTGCTTGACATTGTTAGGGACCAGCAATCAAAAACCCCAAGCCTTGTATTTGAATGTGTTAATAACACCGATTTTAAAGTGCTCTATCCTACATTGTCTGACTATGATATACGATATTATATCTATGAACTTCTAAAGGCATTGGATTATTGCCACTCACAAGGAATCATGCATCGGGATGTAAAACCACATAATGTTATGATCGATCATGCGCAGCGTAAGCTTTGCCTGATAGACTGGGGACTTGCAGAGTTTTATCATCCCGGGCAAGAGTATAATGTCCGCGTTGCCTCAAGATATTTCAAAGGTCCTGAGCTACTTATTGATCTTCAAGACTATGATTACTCACTAGATTTATGGTCACTCGGTTGTATGTTTGCTGGAATGATATTCCGGAAGGAGCCATTCTTTTATGGACAAGATAACTATGATCAACTAGTAAAAATAGCCAAGGTACTTGGAACAGATGAATTACGTGCGTATCAGGACAAGCATGACCGGAAGCCATGGACAAAGTTCATTAATATGGATAACCGACACTTGGCTGTTCCTGAGGCTATTGACTTTCTGGACAAGTTACTACAGTATGATCACCAAGAACGGCTCACTGCAAAAGAAGCTATGGCCCACCCCTACTTCAATCCAGTGAGAAATGCAGAAAGCAGTAAAACTCGCACACATTGA

Protein sequence

>Msa0714070

MAIRPFQSTLSLHRFFSLFRTHHSISSSATTTTTTTNFPPPFSVLSRFATSFSQPHRPQYPPPPPRPDTLAQRIGKSIRRPGASSKARIYADVNVVRPKEYWDYESLAVQWGEQDDYQVLKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLVFECVNNTDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHAQRKLCLIDWGLAEFYHPGQEYNVRVASRYFKGPELLIDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGQDNYDQLVKIAKVLGTDELRAYQDKHDRKPWTKFINMDNRHLAVPEAIDFLDKLLQYDHQERLTAKEAMAHPYFNPVRNAESSKTRTH*