AlfalfaGEDB | Msa0714260

M. sativa cultivar zhongmu-4 / Msa0714260

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714260	XP_024632725.2	64.356	202	47	1	13	189	11	212	4.72e-80	262

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714260	sp\|Q9SY66\|FRS11_ARATH	31.053	190	91	3	27	188	21	198	7.67e-24	101

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714260	A0A834LIC9	46.032	189	69	3	27	189	20	201	5.09e-41	157

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0714260	TF	FAR1

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714260	MtrunA17_Chr2g0276841	34.054	185	83	4	38	188	41	220	3.48e-25	101
Msa0714260	MtrunA17_Chr2g0294841	35.669	157	68	3	64	189	45	199	8.10e-23	95.1
Msa0714260	MtrunA17_Chr2g0290391	32.704	159	79	2	57	189	44	200	7.15e-21	89.4
Msa0714260	MtrunA17_Chr5g0431001	34.177	158	69	3	64	188	61	216	8.04e-16	74.7
Msa0714260	MtrunA17_Chr1g0198761	31.013	158	70	5	67	189	50	203	1.12e-13	68.6

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714260	AT1G10240.2	31.053	190	91	3	27	188	21	198	7.79e-25	101
Msa0714260	AT1G10240.1	31.053	190	91	3	27	188	21	198	7.79e-25	101
Msa0714260	AT5G28530.1	29.944	177	96	3	39	189	30	204	1.52e-20	89.0
Msa0714260	AT5G28530.3	29.944	177	96	3	39	189	30	204	1.68e-20	88.6
Msa0714260	AT5G28530.2	29.944	177	96	3	39	189	30	204	1.68e-20	88.6
Msa0714260	AT5G28530.4	29.944	177	96	3	39	189	30	204	1.69e-20	88.6
Msa0714260	AT5G28530.5	29.944	177	96	3	39	189	30	204	1.93e-20	88.6

Showing 1 to 7 of 7 entries

Previous1Next

Find 19 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTTGCGGTAAGATGCA+AGG	0.591678	5_1:+6888493	None:intergenic
AACGAAATAGACAATCTGCA+AGG	0.668405	5_1:-6888644	Msa0714260:CDS
AATAGACAATCTGCAAGGTG+TGG	0.640554	5_1:-6888639	Msa0714260:CDS
AGAAAACATTGCCCAATAAA+AGG	0.311755	5_1:+6888848	None:intergenic
AGGAAGCGCACTTGATCTCG+AGG	0.633544	5_1:+6888513	None:intergenic
ATCTTACCGCAACATTTATG+AGG	0.481381	5_1:-6888487	Msa0714260:CDS
CATCTTCCTCATAAATGTTG+CGG	0.567397	5_1:+6888481	None:intergenic
CTATTTCGTTGTTCTTTAGA+TGG	0.256140	5_1:+6888657	None:intergenic
CTCAATCAATTGTTCTCATG+TGG	0.560735	5_1:-6889272	Msa0714260:CDS
GAGAATTATGCCAAAAGGAG+TGG	0.544730	5_1:-6888797	Msa0714260:intron

Showing 1 to 10 of 19 entries

Previous1 2Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GGTATATAATGTGTGACATA+AGG	+	chr5_1:6888526-6888545	None:intergenic	30.0%
AAGGAAAGAAATTGAGAACA+AGG	+	chr5_1:6888552-6888571	None:intergenic	30.0%
AGAAAACATTGCCCAATAAA+AGG	+	chr5_1:6888851-6888870	None:intergenic	30.0%
CTATTTCGTTGTTCTTTAGA+TGG	+	chr5_1:6889042-6889061	None:intergenic	30.0%
TAGTAAATCATGATTGTGGT+TGG	+	chr5_1:6889163-6889182	None:intergenic	30.0%
GGTATATAATGTGTGACATA+AGG	+	chr5_1:6888526-6888545	None:intergenic	30.0%
AAGGAAAGAAATTGAGAACA+AGG	+	chr5_1:6888552-6888571	None:intergenic	30.0%
AGAAAACATTGCCCAATAAA+AGG	+	chr5_1:6888851-6888870	None:intergenic	30.0%
CTATTTCGTTGTTCTTTAGA+TGG	+	chr5_1:6889042-6889061	None:intergenic	30.0%
TAGTAAATCATGATTGTGGT+TGG	+	chr5_1:6889163-6889182	None:intergenic	30.0%

Showing 1 to 10 of 94 entries

Previous1 2 3 4 5…10Next

Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	6888401	6889317	6888401	ID=Msa0714260;Name=Msa0714260
chr5_1	mRNA	6888401	6889317	6888401	ID=Msa0714260-mRNA-1;Parent=Msa0714260;Name=Msa0714260-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0\|0\|0\|1\|1\|1\|3\|0\|189
chr5_1	exon	6889259	6889317	6889259	ID=Msa0714260-mRNA-1:exon:2870;Parent=Msa0714260-mRNA-1
chr5_1	exon	6888798	6889000	6888798	ID=Msa0714260-mRNA-1:exon:2869;Parent=Msa0714260-mRNA-1
chr5_1	exon	6888401	6888708	6888401	ID=Msa0714260-mRNA-1:exon:2868;Parent=Msa0714260-mRNA-1
chr5_1	CDS	6889259	6889317	6889259	ID=Msa0714260-mRNA-1:cds;Parent=Msa0714260-mRNA-1
chr5_1	CDS	6888798	6889000	6888798	ID=Msa0714260-mRNA-1:cds;Parent=Msa0714260-mRNA-1
chr5_1	CDS	6888401	6888708	6888401	ID=Msa0714260-mRNA-1:cds;Parent=Msa0714260-mRNA-1

Gene Sequence

>Msa0714260

ATGGATGTGGTAAGTGCTCAAAACTCAATCAATTGTTCTCATGTGGCAGCTATAGCACAGTTAGGAGTCACAGATTTAATTGATTTGAACGATGTTCCAAATAATGAACCATGTGATAATTCAGAAAATGAAGCAATTGATTTGAGCAACAACAAGCAGGAAACAATTACTATCGAAAATTGTTTTGAACCTTTTATTGGGCAATGTTTTCTTAGTGAGGAAGAAGCTTTCAGATTTTATGAGAATTATGCCAAAAGGAGTGGATTTCCAGAAGAAAAAAAATATCATGATCCATCTAAAGAACAACGAAATAGACAATCTGCAAGGTGTGGATGCACAGCGGGCATGACAATCAAATTGAAGAAATCCTTTGAGATTTTTCCAAAAGAATTGCAAGTTATTGAACTTATATCCAACCACAATCATGATTTACTACCTCGAGATCAAGTGCGCTTCCTTGCATCTTACCGCAACATTTATGAGGAAGATGAGAAGAAAATTTTGTTATTAAAAGAAGCTGATCTTTCTGTCAAGAAAATGATGCGTGTTATAGAGCTTGAGAAAAATTAA

Protein sequence

>Msa0714260

MDVVSAQNSINCSHVAAIAQLGVTDLIDLNDVPNNEPCDNSENEAIDLSNNKQETITIENCFEPFIGQCFLSEEEAFRFYENYAKRSGFPEEKKYHDPSKEQRNRQSARCGCTAGMTIKLKKSFEIFPKELQVIELISNHNHDLLPRDQVRFLASYRNIYEEDEKKILLLKEADLSVKKMMRVIELEKN*