AlfalfaGEDB | Msa0714690

M. sativa cultivar zhongmu-4 / Msa0714690

KEGG: K11430
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006139 GO:0006325 GO:0006342 GO:0006349 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009292 GO:0009294 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009965 GO:0009987 GO:0010016 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016278 GO:0016279 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0017053 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031519 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0040030 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044764 GO:0045814 GO:0045857 GO:0045892 GO:0045934 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048586 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0070013 GO:0070734 GO:0071514 GO:0071704 GO:0071840 GO:0080090 GO:0090568 GO:0097159 GO:0099402 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2001141
PFAM: PF18264.4

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714690	AES94654.2	93.511	863	13	1	1	820	1	863	0.0	1645

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714690	sp\|P93831\|CLF_ARATH	57.190	911	265	15	15	820	12	902	0.0	916

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714690	G7K5B7	93.511	863	13	1	1	820	1	863	0.0	1645

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TFs/TRs:

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Gene ID	Type	Classification
Msa0714690	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714690	MtrunA17_Chr5g0401921	93.511	863	13	1	1	820	1	863	0.0	1645
Msa0714690	MtrunA17_Chr1g0194631	46.196	736	297	12	147	818	55	755	0.0	618
Msa0714690	MtrunA17_Chr7g0235081	48.711	349	123	10	520	819	4	345	1.53e-92	294
Msa0714690	MtrunA17_Chr7g0270001	50.752	266	84	4	599	818	32	296	7.97e-79	256
Msa0714690	MtrunA17_Chr7g0235091	36.041	197	104	3	145	341	53	227	2.48e-33	131
Msa0714690	MtrunA17_Chr7g0270011	40.496	121	67	1	218	338	66	181	7.72e-27	112
Msa0714690	MtrunA17_Chr7g0270011	46.053	76	39	1	481	554	211	286	4.68e-11	65.1
Msa0714690	MtrunA17_Chr2g0297191	48.214	56	29	0	732	787	1095	1150	4.36e-11	67.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714690	AT2G23380.1	57.190	911	265	15	15	820	12	902	0.0	916
Msa0714690	AT2G23380.2	57.732	679	172	12	247	820	7	675	0.0	692
Msa0714690	AT4G02020.1	43.155	862	360	20	42	818	36	852	0.0	594
Msa0714690	AT4G02020.4	41.220	803	344	19	42	759	36	795	3.03e-170	513
Msa0714690	AT4G02020.3	42.077	732	339	18	42	731	36	724	1.05e-159	485
Msa0714690	AT4G02020.2	42.077	732	339	18	42	731	36	724	1.05e-159	485
Msa0714690	AT1G02580.1	41.351	370	152	11	487	806	326	680	7.96e-82	276
Msa0714690	AT1G02580.1	27.729	339	202	13	42	360	17	332	1.19e-14	78.6
Msa0714690	AT1G02580.2	45.968	248	115	8	487	729	326	559	2.80e-62	221
Msa0714690	AT1G02580.2	29.682	283	163	11	42	307	17	280	1.08e-14	78.6

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Find 227 sgRNAs with CRISPR-Local

Find 1053 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCATGTAGTGTAAGG+AGG	0.657023	5_1:-7442640	None:intergenic
AAAATTATCGAAACCCGATT+TGG	0.327010	5_1:-7441124	None:intergenic
AAACCATATCATTCAATGAG+CGG	0.654314	5_1:-7447858	None:intergenic
AAAGTGCTTCATCTAATGCT+AGG	0.564163	5_1:+7447469	Msa0714690:CDS
AAATGGTCTAAAGACATGTT+GGG	0.502582	5_1:+7450887	Msa0714690:CDS
AACAATTTGGAACAGGAGAG+TGG	0.550411	5_1:-7454262	None:intergenic
AACACTGAAGATGTACCATG+TGG	0.679817	5_1:+7447216	Msa0714690:CDS
AAGCATTTCAAAACAAGAAT+TGG	0.346654	5_1:+7447939	Msa0714690:CDS
AAGTATACGGAAGGATCGAG+CGG	0.688156	5_1:-7441227	None:intergenic
AATACCTTCGCGTAACAATT+TGG	0.232791	5_1:-7454275	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTCAAAGTCTTTATCTAAAG+CGG	+	chr5_1:7440989-7441008	Msa0714690:five_prime_UTR	30.0%
AAAATTATCGAAACCCGATT+TGG	-	chr5_1:7441127-7441146	None:intergenic	30.0%
CTGAAAACAGATTATGAACA+AGG	+	chr5_1:7441598-7441617	Msa0714690:intron	30.0%
ACGTATTTGAACTTAACTAC+TGG	-	chr5_1:7441673-7441692	None:intergenic	30.0%
TTCAAATAGGGAAGCTTATT+AGG	+	chr5_1:7441696-7441715	Msa0714690:intron	30.0%
GATGTGTTTGTTTCAATGTT+TGG	+	chr5_1:7441718-7441737	Msa0714690:intron	30.0%
CTTCCAGTAATAATATTTCC+AGG	+	chr5_1:7441763-7441782	Msa0714690:intron	30.0%
AGTGAGTAGAATATTATTCC+TGG	-	chr5_1:7441784-7441803	None:intergenic	30.0%
AGGATTCTAATGTTATTCCT+TGG	-	chr5_1:7441947-7441966	None:intergenic	30.0%
CAACAACAAATTACAATCAG+AGG	-	chr5_1:7442252-7442271	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	7440929	7454913	7440929	ID=Msa0714690;Name=Msa0714690
chr5_1	mRNA	7440929	7454913	7440929	ID=Msa0714690-mRNA-1;Parent=Msa0714690;Name=Msa0714690-mRNA-1;_AED=0.12;_eAED=0.12;_QI=241\|0.93\|1\|1\|1\|1\|17\|333\|820
chr5_1	exon	7440929	7441241	7440929	ID=Msa0714690-mRNA-1:exon:3081;Parent=Msa0714690-mRNA-1
chr5_1	exon	7442133	7442234	7442133	ID=Msa0714690-mRNA-1:exon:3082;Parent=Msa0714690-mRNA-1
chr5_1	exon	7442349	7442671	7442349	ID=Msa0714690-mRNA-1:exon:3083;Parent=Msa0714690-mRNA-1
chr5_1	exon	7445633	7445794	7445633	ID=Msa0714690-mRNA-1:exon:3084;Parent=Msa0714690-mRNA-1
chr5_1	exon	7446577	7446661	7446577	ID=Msa0714690-mRNA-1:exon:3085;Parent=Msa0714690-mRNA-1
chr5_1	exon	7446828	7446983	7446828	ID=Msa0714690-mRNA-1:exon:3086;Parent=Msa0714690-mRNA-1
chr5_1	exon	7447070	7447117	7447070	ID=Msa0714690-mRNA-1:exon:3087;Parent=Msa0714690-mRNA-1
chr5_1	exon	7447186	7447257	7447186	ID=Msa0714690-mRNA-1:exon:3088;Parent=Msa0714690-mRNA-1
chr5_1	exon	7447342	7447689	7447342	ID=Msa0714690-mRNA-1:exon:3089;Parent=Msa0714690-mRNA-1
chr5_1	exon	7447844	7448034	7447844	ID=Msa0714690-mRNA-1:exon:3090;Parent=Msa0714690-mRNA-1
chr5_1	exon	7450863	7450998	7450863	ID=Msa0714690-mRNA-1:exon:3091;Parent=Msa0714690-mRNA-1
chr5_1	exon	7451099	7451322	7451099	ID=Msa0714690-mRNA-1:exon:3092;Parent=Msa0714690-mRNA-1
chr5_1	exon	7451509	7451640	7451509	ID=Msa0714690-mRNA-1:exon:3093;Parent=Msa0714690-mRNA-1
chr5_1	exon	7452498	7452591	7452498	ID=Msa0714690-mRNA-1:exon:3094;Parent=Msa0714690-mRNA-1
chr5_1	exon	7453844	7453891	7453844	ID=Msa0714690-mRNA-1:exon:3095;Parent=Msa0714690-mRNA-1
chr5_1	exon	7454215	7454292	7454215	ID=Msa0714690-mRNA-1:exon:3096;Parent=Msa0714690-mRNA-1
chr5_1	exon	7454389	7454913	7454389	ID=Msa0714690-mRNA-1:exon:3097;Parent=Msa0714690-mRNA-1
chr5_1	five_prime_UTR	7440929	7441169	7440929	ID=Msa0714690-mRNA-1:five_prime_utr;Parent=Msa0714690-mRNA-1
chr5_1	CDS	7441170	7441241	7441170	ID=Msa0714690-mRNA-1:cds;Parent=Msa0714690-mRNA-1
chr5_1	CDS	7442133	7442234	7442133	ID=Msa0714690-mRNA-1:cds;Parent=Msa0714690-mRNA-1
chr5_1	CDS	7442349	7442671	7442349	ID=Msa0714690-mRNA-1:cds;Parent=Msa0714690-mRNA-1
chr5_1	CDS	7445633	7445794	7445633	ID=Msa0714690-mRNA-1:cds;Parent=Msa0714690-mRNA-1
chr5_1	CDS	7446577	7446661	7446577	ID=Msa0714690-mRNA-1:cds;Parent=Msa0714690-mRNA-1
chr5_1	CDS	7446828	7446983	7446828	ID=Msa0714690-mRNA-1:cds;Parent=Msa0714690-mRNA-1
chr5_1	CDS	7447070	7447117	7447070	ID=Msa0714690-mRNA-1:cds;Parent=Msa0714690-mRNA-1
chr5_1	CDS	7447186	7447257	7447186	ID=Msa0714690-mRNA-1:cds;Parent=Msa0714690-mRNA-1
chr5_1	CDS	7447342	7447689	7447342	ID=Msa0714690-mRNA-1:cds;Parent=Msa0714690-mRNA-1
chr5_1	CDS	7447844	7448034	7447844	ID=Msa0714690-mRNA-1:cds;Parent=Msa0714690-mRNA-1
chr5_1	CDS	7450863	7450998	7450863	ID=Msa0714690-mRNA-1:cds;Parent=Msa0714690-mRNA-1
chr5_1	CDS	7451099	7451322	7451099	ID=Msa0714690-mRNA-1:cds;Parent=Msa0714690-mRNA-1
chr5_1	CDS	7451509	7451640	7451509	ID=Msa0714690-mRNA-1:cds;Parent=Msa0714690-mRNA-1
chr5_1	CDS	7452498	7452591	7452498	ID=Msa0714690-mRNA-1:cds;Parent=Msa0714690-mRNA-1
chr5_1	CDS	7453844	7453891	7453844	ID=Msa0714690-mRNA-1:cds;Parent=Msa0714690-mRNA-1
chr5_1	CDS	7454215	7454292	7454215	ID=Msa0714690-mRNA-1:cds;Parent=Msa0714690-mRNA-1
chr5_1	CDS	7454389	7454580	7454389	ID=Msa0714690-mRNA-1:cds;Parent=Msa0714690-mRNA-1
chr5_1	three_prime_UTR	7454581	7454913	7454581	ID=Msa0714690-mRNA-1:three_prime_utr;Parent=Msa0714690-mRNA-1

Gene Sequence

>Msa0714690

ATGGCGTCAAACTCTCCGCCTCCGCCTTCTCCGTCTTCTTCTTCCAGATCCGACCCTCCGCTCGATCCTTCCACAAAGAAAGTGGAGGAAACAAGTCCTGCAGTTAAAGACGTGTTAGCGGTTATTGAATCTTTGAAGAAGCAAGTTGCTGCGAAACGAATTGTTACGGTTAAGAATAGAGTGAAGGAAAATAGACAGAAGCTGATTGCTATAACTAACCAGATATGGAAATCGTCGGCGGAGAGGACGTGTGGCATTGCCGATACAGATAGAGGTCTGGATTTGCTGAGTAAGAGGCAAAAAGAAGCAATTGACATGCATAATGGTGTTCGTGCCGGTAATGATGATGGGGAGAGCAATGGTTATAATGGAGATGACCATGGTTCTACGGCAGTACTTCTAGGATCTAATTATGCTGTAAAGAATGCTGTTCGGCCTATTAAATTACCTGAAGTAAAAAGATTGCCTCCTTACACTACATGGATTTTCCTGGACAGAAATCAAAGAATGACAGAGGATCAATCAGTATTAGGTCGGAGGCGAATTTATTATGATCAAAATGGTGGTGAAGCACTTATTTGCAGCGACAGTGAGGAGGAACTAATTGACGAAGAAGAGGAAAAAAGAGAATTTGTAGAATCAGAAGATTTTATACTTCGCATGACTATCAGAGAATTTGGTTTATCTGATGTTGTTTTGGAGATCCTGGCTCAGTGCTTTTCTAGAAAAACTAGTGACATTAAGGCCAGATATGAAACTTTTTGCAATGAAGACAATAGTGGCGAGGATTCTAAAAATGGAGATGCACAAGATAATTCCCAAATTGACGATTCTTTTCTGGAAAAGGATCTTGAAGCGGCTCTTGACTCTTTTGACAACCTATTTTGTCGCCGATGTCGTGTTTTCGATTGCAGATTACATGGATGCTCTCAGGATCTTGTCTTCCCGGCTGAGAGGCAACCTTTGTGGACTCCTCCTAACACTGAAGATGTACCATGTGGGCCAAATTGTTTCCGAACGGTACTCAAGGCAGAAAAAATGGCCAAAGTCACATCTACTCAGACTGATGTTGAAGACAAATCCTCTGGTGGTGCTCTATCTAGGAAAAAGTCTTCCGGTAGAAGACGTATAAAATGCAGCCAAAGTGAAAGTGCTTCATCTAATGCTAGGATCATATCTGAGAGTAGTGACTCAGAGAATGGTCCTGGACGGGATGCTGCTTCAGGCTCCCACTCAGCCCCACCTAAAACTAAACCAGTGGGGAAAAGTGGAATTGGTAAGAGAAACAGTAAGCGAGTGGCAGAACGCGTTCTAGTTTGCATGCAGAAACGGCAGAAGAAAACAGTAGCTTCTGATTCTGATTCCATTAGTGAAGCTCCTGACCGCTCATTGAATGATATGGTTTCTGACCCACATGTTACGAGTGGGGAAGACAACACGAGGAAAGAAGAATTTGTGGATGAAAGCATTTCAAAACAAGAATTGGCTGATAATAAATCTTGGAAAACTCTTGAAAAAGGGCTTTTAGAAAAAGGAATGGAGATTTTTGGCAAAAACAGCTGCCTAATAGCCAGGAATCTCTTAAATGGTCTAAAGACATGTTGGGATGTTTTCCAGTACATAAATTGTGAAGAAGGGAAGTTGTCTGGTTCTACTGGGGATGCTACAAATTCTCTCGTGGAAGGCTATTCCAAGGGTAATAATGAAGTGAGAAGAAGGTCAAAATTTTTACGTAGAAGGGGAAGAGTCCGTCGTTTAAAGTATACCTGGAAATCTGCTGCCTATCATTCAATCAGGAAAAGGATTACAGAGAGAAAGGATCAGCCCTGCCGACAGTACAATCCATGTGGATGCCAATCAGCTTGTGGAAAGGAGTGTCCTTGTCTTCTAAATGGAACCTGCTGTGAGAAGTACTGTGGATGCCCCAAGAGTTGTAAAAATCGATTTCGAGGCTGTCATTGTGCGAAGAGTCAATGCCGAAGTCGTCAATGTCCATGCTTTGCTGCAGATAGGGAATGTGATCCAGATGTTTGTAGGAACTGTTGGGTCAGCAGCTGTGGCGATGGCACTCTTGGGATTCCTAGTCAAAGAGGGGATAATTATGAATGTAGAAACATGAAGCTTCTTCTCAAACAGCAGCAAAAGGTTCTTCTTGGACGGTCTGATGTGTCTGGCTGGGGAGCCTTCTTAAAGTTTGTTCTTGATGCTTATCGAAAGGGTGATAAATTGAAGTTTGCAAACCACTCTCCTGTTCCAAATTGTTACGCGAAGGTTATTATGGTTGATGGAGATCATAGGGTAGGAATATTTGCTAAGGAACGGATTAATGCTGGCGAGGAGCTGTTTTATGATTACCGTTATGAGCCCGATAGAGCTCCTGCTTGGGCTCGAAAGCCAGATGCCCCTGGATCGAAAAAAGAAGACGGTGCTCCTTCAAGTGGTCGTGCAAAGAAGCTTGCTTAA

Protein sequence

>Msa0714690

MASNSPPPPSPSSSSRSDPPLDPSTKKVEETSPAVKDVLAVIESLKKQVAAKRIVTVKNRVKENRQKLIAITNQIWKSSAERTCGIADTDRGLDLLSKRQKEAIDMHNGVRAGNDDGESNGYNGDDHGSTAVLLGSNYAVKNAVRPIKLPEVKRLPPYTTWIFLDRNQRMTEDQSVLGRRRIYYDQNGGEALICSDSEEELIDEEEEKREFVESEDFILRMTIREFGLSDVVLEILAQCFSRKTSDIKARYETFCNEDNSGEDSKNGDAQDNSQIDDSFLEKDLEAALDSFDNLFCRRCRVFDCRLHGCSQDLVFPAERQPLWTPPNTEDVPCGPNCFRTVLKAEKMAKVTSTQTDVEDKSSGGALSRKKSSGRRRIKCSQSESASSNARIISESSDSENGPGRDAASGSHSAPPKTKPVGKSGIGKRNSKRVAERVLVCMQKRQKKTVASDSDSISEAPDRSLNDMVSDPHVTSGEDNTRKEEFVDESISKQELADNKSWKTLEKGLLEKGMEIFGKNSCLIARNLLNGLKTCWDVFQYINCEEGKLSGSTGDATNSLVEGYSKGNNEVRRRSKFLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQSACGKECPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWVSSCGDGTLGIPSQRGDNYECRNMKLLLKQQQKVLLGRSDVSGWGAFLKFVLDAYRKGDKLKFANHSPVPNCYAKVIMVDGDHRVGIFAKERINAGEELFYDYRYEPDRAPAWARKPDAPGSKKEDGAPSSGRAKKLA*