AlfalfaGEDB | Msa0714820

M. sativa cultivar zhongmu-4 / Msa0714820

KEGG: -
GO: GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030587 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032502 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048046 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051703 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090702 GO:0097435 GO:0099120 GO:0099568 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714820	XP_003611720.1	71.388	353	92	7	2	347	3	353	3.66e-172	493

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714820	sp\|Q9SND6\|M3K20_ARATH	47.339	357	161	8	1	345	1	342	5.62e-101	304

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714820	G7K6M1	71.388	353	92	7	2	347	3	353	1.75e-172	493

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714820	MtrunA17_Chr5g0402091	71.388	353	92	7	2	347	3	353	3.36e-176	493
Msa0714820	MtrunA17_Chr5g0402111	67.568	296	86	6	1	290	1	292	3.46e-140	400
Msa0714820	MtrunA17_Chr4g0052981	56.484	347	137	5	1	345	1	335	8.80e-134	384
Msa0714820	MtrunA17_Chr4g0052961	56.196	347	138	5	1	345	38	372	3.29e-131	379
Msa0714820	MtrunA17_Chr8g0375141	56.897	348	134	6	1	345	40	374	4.72e-131	379
Msa0714820	MtrunA17_Chr2g0288841	38.746	351	188	10	1	347	3	330	2.13e-64	210
Msa0714820	MtrunA17_Chr2g0322401	44.364	275	138	8	1	271	3	266	2.37e-63	206
Msa0714820	MtrunA17_Chr4g0025041	39.514	329	178	9	1	327	1	310	5.43e-62	203
Msa0714820	MtrunA17_Chr2g0276831	36.577	298	162	7	3	277	10	303	1.78e-57	190
Msa0714820	MtrunA17_Chr3g0130151	36.364	286	167	7	2	280	243	520	4.32e-52	182

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714820	AT5G67080.1	46.944	360	160	8	1	345	1	344	5.75e-106	314
Msa0714820	AT4G36950.1	52.685	298	132	4	1	294	1	293	1.70e-103	308
Msa0714820	AT3G50310.1	47.339	357	161	8	1	345	1	342	5.71e-102	304
Msa0714820	AT4G26890.1	40.510	353	187	8	1	345	3	340	1.00e-71	230
Msa0714820	AT5G55090.1	38.827	358	189	10	1	345	4	344	2.72e-69	224
Msa0714820	AT5G55090.2	38.936	357	188	10	2	345	67	406	2.43e-68	223
Msa0714820	AT2G32510.1	43.609	266	139	6	1	262	1	259	2.09e-65	211
Msa0714820	AT1G05100.1	42.053	302	155	10	1	294	1	290	2.54e-62	202
Msa0714820	AT2G30040.1	40.075	267	142	5	3	263	17	271	6.13e-55	186
Msa0714820	AT1G07150.2	34.758	351	193	9	3	345	9	331	5.67e-52	179

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Find 74 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGATACTTGACAGTTT+AGG	0.366001	5_1:-7639987	Msa0714820:CDS
AACACACAGAAACATGAATT+GGG	0.521843	5_1:-7640144	None:intergenic
AACGAAACATCGCAAATGAA+AGG	0.515982	5_1:+7639354	None:intergenic
AACTCCGATGTATATGTCGC+CGG	0.580385	5_1:-7639637	Msa0714820:CDS
AATATTCTTGTATTTGATGA+TGG	0.415570	5_1:-7639732	Msa0714820:CDS
ACCATGATTCTTGAGTTGAT+CGG	0.594621	5_1:+7639860	None:intergenic
ACCGTCAGATTGCTTAGAAT+CGG	0.468605	5_1:-7639139	Msa0714820:CDS
ACGAAACATCGCAAATGAAA+GGG	0.550031	5_1:+7639355	None:intergenic
AGAAACATGAATTGGGTTCG+AGG	0.557573	5_1:-7640137	None:intergenic
AGGTAGTGGCGGCTTTGCCA+CGG	0.544435	5_1:-7640105	Msa0714820:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTATGTATCTGAAGATTTGA+CGG	+	chr5_1:7639210-7639229	None:intergenic	30.0%
AAACAGATACTTGACAGTTT+AGG	-	chr5_1:7639254-7639273	Msa0714820:CDS	30.0%
AAGGCTTCAAAAGTGAAAAA+TGG	-	chr5_1:7639570-7639589	Msa0714820:CDS	30.0%
AGGCTTCAAAAGTGAAAAAT+GGG	-	chr5_1:7639571-7639590	Msa0714820:CDS	30.0%
AAAGTGAAAAATGGGAATGT+AGG	-	chr5_1:7639579-7639598	Msa0714820:CDS	30.0%
AAGTGAAAAATGGGAATGTA+GGG	-	chr5_1:7639580-7639599	Msa0714820:CDS	30.0%
CCTTCTTCTGATAATTCATT+TGG	+	chr5_1:7639794-7639813	None:intergenic	30.0%
CCAAATGAATTATCAGAAGA+AGG	-	chr5_1:7639791-7639810	Msa0714820:CDS	30.0%
TTAGAGATCATTTGAAGAGA+TGG	-	chr5_1:7639840-7639859	Msa0714820:CDS	30.0%
GTATGTATCTGAAGATTTGA+CGG	+	chr5_1:7639210-7639229	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	7639110	7640153	7639110	ID=Msa0714820;Name=Msa0714820
chr5_1	mRNA	7639110	7640153	7639110	ID=Msa0714820-mRNA-1;Parent=Msa0714820;Name=Msa0714820-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|347
chr5_1	exon	7639110	7640153	7639110	ID=Msa0714820-mRNA-1:exon:3211;Parent=Msa0714820-mRNA-1
chr5_1	CDS	7639110	7640153	7639110	ID=Msa0714820-mRNA-1:cds;Parent=Msa0714820-mRNA-1

Gene Sequence

>Msa0714820

ATGAATTGGGTTCGAGGTGAGATGCTAGGTAGTGGCGGCTTTGCCACGGTCAACTTAGCCACACATAAGGATTCCGATAGCTTTCCACCTCTCACCGCCGTCAAATCTTCAGATACATACAACTCCAGTTTTCTCTTAAGCGAGAAACAGATACTTGACAGTTTAGGATCATCTCCACATATCATTAAGTGCTTTGGTCAGGATCGAACTTTCGAAAACGGCGAAGAGTGTTATAATATTTTTCTAGAATATGCTGCTGGTGGTACTCTCTCCGATCAACTCAAGAATCATGGTGGTAAGTTTCCGGAGAATCTTGTTCGTCGTTACACAAGGTCCGTCCTTGAAGGACTCAAACATATTCACGACAAAGGCTTTGTTCACTGTGATTTGAAGCTGCCAAATATTCTTGTATTTGATGATGGCGAAGTTAAGATTTCGGATTTTGGCCTTGCTAAGGAGAAAGGCTTCAAAAGTGAAAAATGGGAATGTAGGGGAACTCCGATGTATATGTCGCCGGAAGCAGTGAGTGAGAGTATTTATGAATCGCCAACAGATATATGGGCTCTTGGATGTGCCGTTGTGGAGATGGTTACTGGAAAATCTCCATGGAATGTAAGCTGCAAGACAAATATGTGGTGGTTTTTGTCTCATATTGGAATGGGAGAAGAAATACCGTTGATTCCAAATGAATTATCAGAAGAAGGGAAAGATTTTCTTCAAAAGTGTTTTGTTAGAGATCATTTGAAGAGATGGAGTGCAGATATGCTATTAAAACACCCTTTCATTTGCGATGTTTCGTTGACGAAAGAGTTAAAGATTAACGAGTCATCATTGCCATTCCCATCTCCACGGACACACTTCGATTTTTTGCATTGGTCTTCTTCTTCAACCTCAACGACTCTGCCTCCTAATTTAGAGTTGTGTGAGTCTGAATTTGAGCATGGTTTTCCTTCACTGGCAGACAGGCTTCAGCAACTAGTTGTAGATCATAAACCGTCAGATTGCTTAGAATCGGATGGTTGGTGTGTTGTTAGGTCAAATTAG

Protein sequence

>Msa0714820

MNWVRGEMLGSGGFATVNLATHKDSDSFPPLTAVKSSDTYNSSFLLSEKQILDSLGSSPHIIKCFGQDRTFENGEECYNIFLEYAAGGTLSDQLKNHGGKFPENLVRRYTRSVLEGLKHIHDKGFVHCDLKLPNILVFDDGEVKISDFGLAKEKGFKSEKWECRGTPMYMSPEAVSESIYESPTDIWALGCAVVEMVTGKSPWNVSCKTNMWWFLSHIGMGEEIPLIPNELSEEGKDFLQKCFVRDHLKRWSADMLLKHPFICDVSLTKELKINESSLPFPSPRTHFDFLHWSSSSTSTTLPPNLELCESEFEHGFPSLADRLQQLVVDHKPSDCLESDGWCVVRSN*