Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714970 | XP_003611755.1 | 81.890 | 254 | 21 | 3 | 1 | 254 | 1 | 229 | 1.23e-140 | 404 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714970 | G7K6Q6 | 81.890 | 254 | 21 | 3 | 1 | 254 | 1 | 229 | 5.87e-141 | 404 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0714970 | TF | Trihelix |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714970 | MtrunA17_Chr5g0402321 | 81.890 | 254 | 21 | 3 | 1 | 254 | 1 | 229 | 1.13e-144 | 404 |
| Msa0714970 | MtrunA17_Chr4g0066271 | 45.872 | 109 | 57 | 1 | 15 | 123 | 109 | 215 | 9.60e-27 | 107 |
| Msa0714970 | MtrunA17_Chr7g0250201 | 49.020 | 102 | 49 | 2 | 20 | 119 | 43 | 143 | 6.91e-22 | 93.6 |
| Msa0714970 | MtrunA17_Chr1g0179531 | 31.111 | 135 | 74 | 4 | 23 | 144 | 133 | 261 | 6.77e-16 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714970 | AT3G24860.1 | 34.082 | 267 | 140 | 5 | 12 | 253 | 54 | 309 | 5.06e-44 | 151 |
| Msa0714970 | AT2G44730.1 | 44.348 | 115 | 54 | 2 | 10 | 120 | 51 | 159 | 1.23e-22 | 95.5 |
| Msa0714970 | AT3G10030.1 | 36.634 | 101 | 58 | 2 | 23 | 123 | 161 | 255 | 3.09e-15 | 75.1 |
| Msa0714970 | AT3G10030.2 | 36.634 | 101 | 58 | 2 | 23 | 123 | 161 | 255 | 3.42e-15 | 75.1 |
| Msa0714970 | AT3G54390.1 | 28.139 | 231 | 142 | 5 | 23 | 238 | 38 | 259 | 3.56e-15 | 73.9 |
| Msa0714970 | AT3G54390.2 | 28.139 | 231 | 142 | 5 | 23 | 238 | 54 | 275 | 4.96e-15 | 73.6 |
| Msa0714970 | AT3G58630.2 | 31.624 | 117 | 67 | 2 | 23 | 129 | 26 | 139 | 3.80e-14 | 71.2 |
| Msa0714970 | AT3G58630.1 | 31.624 | 117 | 67 | 2 | 23 | 129 | 26 | 139 | 4.51e-14 | 71.2 |
Find 81 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTTGTTACTGTTGGTTTC+TGG | 0.153076 | 5_1:+7804069 | None:intergenic |
| TGATGAGGTTAATGGTTTCT+TGG | 0.248878 | 5_1:+7804480 | None:intergenic |
| GTAGGCTCTGATGAGGTTAA+TGG | 0.265129 | 5_1:+7804472 | None:intergenic |
| GATTCTATTGGAAAGGCATT+TGG | 0.282980 | 5_1:-7803822 | Msa0714970:CDS |
| TGGAGGATTGTTGATTCTAT+TGG | 0.285128 | 5_1:-7803834 | Msa0714970:CDS |
| ACGACATTGAAGAGCGGTTT+TGG | 0.311108 | 5_1:+7804343 | None:intergenic |
| TCTTGGTGGGTCCATGGAAT+GGG | 0.347722 | 5_1:+7804497 | None:intergenic |
| TTCTTGGTGGGTCCATGGAA+TGG | 0.347924 | 5_1:+7804496 | None:intergenic |
| CCGTCGCTATCGTCGGAGAT+AGG | 0.363885 | 5_1:+7804158 | None:intergenic |
| GATTAGAGATGGAGAATAAG+AGG | 0.371813 | 5_1:-7803881 | Msa0714970:CDS |
| ATTCTATTGGAAAGGCATTT+GGG | 0.373738 | 5_1:-7803821 | Msa0714970:CDS |
| TTTCAGATCGGTGGCGTTGA+CGG | 0.386482 | 5_1:+7804303 | None:intergenic |
| ATGGGTTGAGGTTTCTTTGT+GGG | 0.390802 | 5_1:+7804515 | None:intergenic |
| GAAATGGTATTCACTCAAAC+GGG | 0.393548 | 5_1:-7804444 | Msa0714970:CDS |
| GCCCACTCCGCGGCAGTCAA+TGG | 0.394607 | 5_1:-7804421 | Msa0714970:CDS |
| GGAGGAGGAAGACGAAGAGG+AGG | 0.400142 | 5_1:-7804009 | Msa0714970:CDS |
| GAAAGAGGTCGGACGGAGAT+AGG | 0.403361 | 5_1:+7804191 | None:intergenic |
| CCGCCGCTTCTTCTCGATCC+TGG | 0.407620 | 5_1:-7804256 | Msa0714970:CDS |
| CCCATTGACTGCCGCGGAGT+GGG | 0.424106 | 5_1:+7804420 | None:intergenic |
| TGCAGAGAGGATTGTAGGGT+TGG | 0.427539 | 5_1:-7803946 | Msa0714970:CDS |
| ATGGTTTCTTGGTGGGTCCA+TGG | 0.435098 | 5_1:+7804491 | None:intergenic |
| TGATGATGAAGAGGAGGAGG+AGG | 0.437652 | 5_1:-7804024 | Msa0714970:CDS |
| ATAGTGCTGCTAGGTCTGTT+AGG | 0.441997 | 5_1:-7804118 | Msa0714970:CDS |
| TGGGTCCATGGAATGGGTTG+AGG | 0.452120 | 5_1:+7804503 | None:intergenic |
| CCCACTCCGCGGCAGTCAAT+GGG | 0.457508 | 5_1:-7804420 | Msa0714970:CDS |
| TGTTGTTGTCTTGTTACTGT+TGG | 0.461863 | 5_1:+7804062 | None:intergenic |
| GAGGAGGAAGACGAAGAGGA+GGG | 0.463856 | 5_1:-7804008 | Msa0714970:CDS |
| GGATCGAGAAGAAGCGGCGG+AGG | 0.465439 | 5_1:+7804259 | None:intergenic |
| AGAGAGGTTTAGATTAGAGA+TGG | 0.466781 | 5_1:-7803892 | Msa0714970:CDS |
| TTGAGGTTTCTTTGTGGGAA+GGG | 0.468718 | 5_1:+7804520 | None:intergenic |
| TCAGAGCCTACCAAGAGAAA+TGG | 0.468909 | 5_1:-7804460 | Msa0714970:CDS |
| AACTGATGATGAAGAGGAGG+AGG | 0.476758 | 5_1:-7804027 | Msa0714970:CDS |
| TCCCATTGACTGCCGCGGAG+TGG | 0.479922 | 5_1:+7804419 | None:intergenic |
| AGAAATGGTATTCACTCAAA+CGG | 0.486979 | 5_1:-7804445 | Msa0714970:CDS |
| GTATGATACTTGAATCTCAA+TGG | 0.493726 | 5_1:-7803854 | Msa0714970:CDS |
| GAGGTTAATGGTTTCTTGGT+GGG | 0.497980 | 5_1:+7804484 | None:intergenic |
| AGGGAAAGAGTGAGTTCTGC+TGG | 0.504699 | 5_1:+7804539 | None:intergenic |
| CGTCGCTATCGTCGGAGATA+GGG | 0.505081 | 5_1:+7804159 | None:intergenic |
| GGAGGAGGAGGAAGACGAAG+AGG | 0.507090 | 5_1:-7804012 | Msa0714970:CDS |
| TGAATACCATTTCTCTTGGT+AGG | 0.515604 | 5_1:+7804454 | None:intergenic |
| TGAGTGAATACCATTTCTCT+TGG | 0.519977 | 5_1:+7804450 | None:intergenic |
| GATTGTTGATTCTATTGGAA+AGG | 0.528242 | 5_1:-7803829 | Msa0714970:CDS |
| AGACGAAGAGGAGGGAGTGA+TGG | 0.530323 | 5_1:-7804000 | Msa0714970:CDS |
| TGAGGTTAATGGTTTCTTGG+TGG | 0.535347 | 5_1:+7804483 | None:intergenic |
| TCTTCAATGTCGTCATAAGA+TGG | 0.539576 | 5_1:-7804333 | Msa0714970:CDS |
| AATGGGTTGAGGTTTCTTTG+TGG | 0.544865 | 5_1:+7804514 | None:intergenic |
| AGAAACCTCAACCCATTCCA+TGG | 0.546082 | 5_1:-7804508 | Msa0714970:CDS |
| TCTCTTGGTAGGCTCTGATG+AGG | 0.553443 | 5_1:+7804465 | None:intergenic |
| TAAGAAGATGGAGATGATGA+AGG | 0.556347 | 5_1:-7803919 | Msa0714970:CDS |
| CGGCAGTCAATGGGAAGAAG+TGG | 0.558439 | 5_1:-7804411 | Msa0714970:CDS |
| ATAGGGTGCTTCTGAGAAAG+AGG | 0.564002 | 5_1:+7804176 | None:intergenic |
| GTTGAGGTTTCTTTGTGGGA+AGG | 0.565690 | 5_1:+7804519 | None:intergenic |
| GGTCGGACGGAGATAGGTAA+AGG | 0.569635 | 5_1:+7804197 | None:intergenic |
| AGGGTTGGAAAATAAGAAGA+TGG | 0.571203 | 5_1:-7803931 | Msa0714970:CDS |
| CTTCTTCCCATTGACTGCCG+CGG | 0.577676 | 5_1:+7804414 | None:intergenic |
| AGAAGCGGCGGAGGAAGTAG+CGG | 0.578291 | 5_1:+7804268 | None:intergenic |
| CTGCTAGGTCTGTTAGGTCA+AGG | 0.578720 | 5_1:-7804112 | Msa0714970:CDS |
| CCGACGATAGCGACGGTGAG+AGG | 0.582725 | 5_1:-7804151 | Msa0714970:CDS |
| CCTCTCACCGTCGCTATCGT+CGG | 0.588877 | 5_1:+7804151 | None:intergenic |
| CGGAGGAAGTAGCGGTGAGG+CGG | 0.592434 | 5_1:+7804276 | None:intergenic |
| CGACGATAGCGACGGTGAGA+GGG | 0.604292 | 5_1:-7804150 | Msa0714970:CDS |
| GAGTTCTGCTGGTGAAGCGG+TGG | 0.606218 | 5_1:+7804550 | None:intergenic |
| CATGAGACGAAAATACTGCC+AGG | 0.607104 | 5_1:+7804238 | None:intergenic |
| CTTCTGAGAAAGAGGTCGGA+CGG | 0.613702 | 5_1:+7804184 | None:intergenic |
| CTGCCAGGATCGAGAAGAAG+CGG | 0.618066 | 5_1:+7804253 | None:intergenic |
| GGTGCTTCTGAGAAAGAGGT+CGG | 0.636676 | 5_1:+7804180 | None:intergenic |
| AGATGATGAAGGAAACAGAG+AGG | 0.638850 | 5_1:-7803908 | Msa0714970:CDS |
| CTCAAACGGGGCCCACTCCG+CGG | 0.643190 | 5_1:-7804431 | Msa0714970:CDS |
| TGATGAAACTGATGATGAAG+AGG | 0.652723 | 5_1:-7804033 | Msa0714970:CDS |
| TGATACTTGAATCTCAATGG+AGG | 0.662965 | 5_1:-7803851 | Msa0714970:CDS |
| CTCATGGATGATCTTGAACG+CGG | 0.669974 | 5_1:-7804221 | Msa0714970:CDS |
| CCAGGATCGAGAAGAAGCGG+CGG | 0.670197 | 5_1:+7804256 | None:intergenic |
| AGTGAGTTCTGCTGGTGAAG+CGG | 0.672238 | 5_1:+7804547 | None:intergenic |
| TGAAACTGATGATGAAGAGG+AGG | 0.676552 | 5_1:-7804030 | Msa0714970:CDS |
| CTTATGACGACATTGAAGAG+CGG | 0.678566 | 5_1:+7804337 | None:intergenic |
| CCTATCTCCGACGATAGCGA+CGG | 0.701116 | 5_1:-7804158 | Msa0714970:CDS |
| GTAATCGTAGCCGCAACGAG+CGG | 0.705311 | 5_1:+7804376 | None:intergenic |
| CGGCGGAGGAAGTAGCGGTG+AGG | 0.707049 | 5_1:+7804273 | None:intergenic |
| GATGGCGAAGAGTTTGACAG+CGG | 0.738106 | 5_1:-7803982 | Msa0714970:CDS |
| AAATGGTATTCACTCAAACG+GGG | 0.751020 | 5_1:-7804443 | Msa0714970:CDS |
| GTAGTCGTAGCCGCTCGTTG+CGG | 0.770618 | 5_1:-7804386 | Msa0714970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AGAAATGGTATTCACTCAAA+CGG | - | chr5_1:7803921-7803940 | Msa0714970:CDS | 30.0% | |
| GTATGATACTTGAATCTCAA+TGG | - | chr5_1:7804512-7804531 | Msa0714970:CDS | 30.0% | |
| !! | GATTGTTGATTCTATTGGAA+AGG | - | chr5_1:7804537-7804556 | Msa0714970:CDS | 30.0% |
| !! | ATTCTATTGGAAAGGCATTT+GGG | - | chr5_1:7804545-7804564 | Msa0714970:CDS | 30.0% |
| AGAAATGGTATTCACTCAAA+CGG | - | chr5_1:7803921-7803940 | Msa0714970:CDS | 30.0% | |
| GTATGATACTTGAATCTCAA+TGG | - | chr5_1:7804512-7804531 | Msa0714970:CDS | 30.0% | |
| !! | GATTGTTGATTCTATTGGAA+AGG | - | chr5_1:7804537-7804556 | Msa0714970:CDS | 30.0% |
| !! | ATTCTATTGGAAAGGCATTT+GGG | - | chr5_1:7804545-7804564 | Msa0714970:CDS | 30.0% |
| TGATGAGGTTAATGGTTTCT+TGG | + | chr5_1:7803889-7803908 | None:intergenic | 35.0% | |
| TGAATACCATTTCTCTTGGT+AGG | + | chr5_1:7803915-7803934 | None:intergenic | 35.0% | |
| TGAGTGAATACCATTTCTCT+TGG | + | chr5_1:7803919-7803938 | None:intergenic | 35.0% | |
| GAAATGGTATTCACTCAAAC+GGG | - | chr5_1:7803922-7803941 | Msa0714970:CDS | 35.0% | |
| AAATGGTATTCACTCAAACG+GGG | - | chr5_1:7803923-7803942 | Msa0714970:CDS | 35.0% | |
| TCTTCAATGTCGTCATAAGA+TGG | - | chr5_1:7804033-7804052 | Msa0714970:CDS | 35.0% | |
| ! | TGTTGTTGTCTTGTTACTGT+TGG | + | chr5_1:7804307-7804326 | None:intergenic | 35.0% |
| ! | TGATGAAACTGATGATGAAG+AGG | - | chr5_1:7804333-7804352 | Msa0714970:CDS | 35.0% |
| AGGGTTGGAAAATAAGAAGA+TGG | - | chr5_1:7804435-7804454 | Msa0714970:CDS | 35.0% | |
| TAAGAAGATGGAGATGATGA+AGG | - | chr5_1:7804447-7804466 | Msa0714970:CDS | 35.0% | |
| AGAGAGGTTTAGATTAGAGA+TGG | - | chr5_1:7804474-7804493 | Msa0714970:CDS | 35.0% | |
| GATTAGAGATGGAGAATAAG+AGG | - | chr5_1:7804485-7804504 | Msa0714970:CDS | 35.0% | |
| TGATACTTGAATCTCAATGG+AGG | - | chr5_1:7804515-7804534 | Msa0714970:CDS | 35.0% | |
| !! | TGGAGGATTGTTGATTCTAT+TGG | - | chr5_1:7804532-7804551 | Msa0714970:CDS | 35.0% |
| !! | GATTCTATTGGAAAGGCATT+TGG | - | chr5_1:7804544-7804563 | Msa0714970:CDS | 35.0% |
| TGATGAGGTTAATGGTTTCT+TGG | + | chr5_1:7803889-7803908 | None:intergenic | 35.0% | |
| TGAATACCATTTCTCTTGGT+AGG | + | chr5_1:7803915-7803934 | None:intergenic | 35.0% | |
| TGAGTGAATACCATTTCTCT+TGG | + | chr5_1:7803919-7803938 | None:intergenic | 35.0% | |
| GAAATGGTATTCACTCAAAC+GGG | - | chr5_1:7803922-7803941 | Msa0714970:CDS | 35.0% | |
| AAATGGTATTCACTCAAACG+GGG | - | chr5_1:7803923-7803942 | Msa0714970:CDS | 35.0% | |
| TCTTCAATGTCGTCATAAGA+TGG | - | chr5_1:7804033-7804052 | Msa0714970:CDS | 35.0% | |
| ! | TGTTGTTGTCTTGTTACTGT+TGG | + | chr5_1:7804307-7804326 | None:intergenic | 35.0% |
| ! | TGATGAAACTGATGATGAAG+AGG | - | chr5_1:7804333-7804352 | Msa0714970:CDS | 35.0% |
| AGGGTTGGAAAATAAGAAGA+TGG | - | chr5_1:7804435-7804454 | Msa0714970:CDS | 35.0% | |
| TAAGAAGATGGAGATGATGA+AGG | - | chr5_1:7804447-7804466 | Msa0714970:CDS | 35.0% | |
| AGAGAGGTTTAGATTAGAGA+TGG | - | chr5_1:7804474-7804493 | Msa0714970:CDS | 35.0% | |
| GATTAGAGATGGAGAATAAG+AGG | - | chr5_1:7804485-7804504 | Msa0714970:CDS | 35.0% | |
| TGATACTTGAATCTCAATGG+AGG | - | chr5_1:7804515-7804534 | Msa0714970:CDS | 35.0% | |
| !! | TGGAGGATTGTTGATTCTAT+TGG | - | chr5_1:7804532-7804551 | Msa0714970:CDS | 35.0% |
| !! | GATTCTATTGGAAAGGCATT+TGG | - | chr5_1:7804544-7804563 | Msa0714970:CDS | 35.0% |
| TTGAGGTTTCTTTGTGGGAA+GGG | + | chr5_1:7803849-7803868 | None:intergenic | 40.0% | |
| ! | ATGGGTTGAGGTTTCTTTGT+GGG | + | chr5_1:7803854-7803873 | None:intergenic | 40.0% |
| !! | AATGGGTTGAGGTTTCTTTG+TGG | + | chr5_1:7803855-7803874 | None:intergenic | 40.0% |
| GAGGTTAATGGTTTCTTGGT+GGG | + | chr5_1:7803885-7803904 | None:intergenic | 40.0% | |
| TGAGGTTAATGGTTTCTTGG+TGG | + | chr5_1:7803886-7803905 | None:intergenic | 40.0% | |
| !!! | ATTGAAGAGCGGTTTTGGAA+GGG | + | chr5_1:7804021-7804040 | None:intergenic | 40.0% |
| CTTATGACGACATTGAAGAG+CGG | + | chr5_1:7804032-7804051 | None:intergenic | 40.0% | |
| ! | TGAAAAAGCATAGTGCTGCT+AGG | - | chr5_1:7804239-7804258 | Msa0714970:CDS | 40.0% |
| !! | GTCTTGTTACTGTTGGTTTC+TGG | + | chr5_1:7804300-7804319 | None:intergenic | 40.0% |
| ! | TGAAACTGATGATGAAGAGG+AGG | - | chr5_1:7804336-7804355 | Msa0714970:CDS | 40.0% |
| ! | AGTTGAGAAGTTTTGCAGAG+AGG | - | chr5_1:7804407-7804426 | Msa0714970:CDS | 40.0% |
| ! | AGTTTTGCAGAGAGGATTGT+AGG | - | chr5_1:7804415-7804434 | Msa0714970:CDS | 40.0% |
| ! | GTTTTGCAGAGAGGATTGTA+GGG | - | chr5_1:7804416-7804435 | Msa0714970:CDS | 40.0% |
| AGATGATGAAGGAAACAGAG+AGG | - | chr5_1:7804458-7804477 | Msa0714970:CDS | 40.0% | |
| TTGAGGTTTCTTTGTGGGAA+GGG | + | chr5_1:7803849-7803868 | None:intergenic | 40.0% | |
| ! | ATGGGTTGAGGTTTCTTTGT+GGG | + | chr5_1:7803854-7803873 | None:intergenic | 40.0% |
| !! | AATGGGTTGAGGTTTCTTTG+TGG | + | chr5_1:7803855-7803874 | None:intergenic | 40.0% |
| GAGGTTAATGGTTTCTTGGT+GGG | + | chr5_1:7803885-7803904 | None:intergenic | 40.0% | |
| TGAGGTTAATGGTTTCTTGG+TGG | + | chr5_1:7803886-7803905 | None:intergenic | 40.0% | |
| !!! | ATTGAAGAGCGGTTTTGGAA+GGG | + | chr5_1:7804021-7804040 | None:intergenic | 40.0% |
| CTTATGACGACATTGAAGAG+CGG | + | chr5_1:7804032-7804051 | None:intergenic | 40.0% | |
| ! | TGAAAAAGCATAGTGCTGCT+AGG | - | chr5_1:7804239-7804258 | Msa0714970:CDS | 40.0% |
| !! | GTCTTGTTACTGTTGGTTTC+TGG | + | chr5_1:7804300-7804319 | None:intergenic | 40.0% |
| ! | TGAAACTGATGATGAAGAGG+AGG | - | chr5_1:7804336-7804355 | Msa0714970:CDS | 40.0% |
| ! | AGTTGAGAAGTTTTGCAGAG+AGG | - | chr5_1:7804407-7804426 | Msa0714970:CDS | 40.0% |
| ! | AGTTTTGCAGAGAGGATTGT+AGG | - | chr5_1:7804415-7804434 | Msa0714970:CDS | 40.0% |
| ! | GTTTTGCAGAGAGGATTGTA+GGG | - | chr5_1:7804416-7804435 | Msa0714970:CDS | 40.0% |
| AGATGATGAAGGAAACAGAG+AGG | - | chr5_1:7804458-7804477 | Msa0714970:CDS | 40.0% | |
| GTTGAGGTTTCTTTGTGGGA+AGG | + | chr5_1:7803850-7803869 | None:intergenic | 45.0% | |
| AGAAACCTCAACCCATTCCA+TGG | - | chr5_1:7803858-7803877 | Msa0714970:CDS | 45.0% | |
| ! | GTAGGCTCTGATGAGGTTAA+TGG | + | chr5_1:7803897-7803916 | None:intergenic | 45.0% |
| TCAGAGCCTACCAAGAGAAA+TGG | - | chr5_1:7803906-7803925 | Msa0714970:CDS | 45.0% | |
| !!! | CATTGAAGAGCGGTTTTGGA+AGG | + | chr5_1:7804022-7804041 | None:intergenic | 45.0% |
| ! | ACGACATTGAAGAGCGGTTT+TGG | + | chr5_1:7804026-7804045 | None:intergenic | 45.0% |
| !! | TGAGGCGGTGTTTTTCAGAT+CGG | + | chr5_1:7804078-7804097 | None:intergenic | 45.0% |
| CATGAGACGAAAATACTGCC+AGG | + | chr5_1:7804131-7804150 | None:intergenic | 45.0% | |
| ! | CTGGCAGTATTTTCGTCTCA+TGG | - | chr5_1:7804129-7804148 | Msa0714970:CDS | 45.0% |
| CTCATGGATGATCTTGAACG+CGG | - | chr5_1:7804145-7804164 | Msa0714970:CDS | 45.0% | |
| ! | ATAGGGTGCTTCTGAGAAAG+AGG | + | chr5_1:7804193-7804212 | None:intergenic | 45.0% |
| ! | ATAGTGCTGCTAGGTCTGTT+AGG | - | chr5_1:7804248-7804267 | Msa0714970:CDS | 45.0% |
| ! | AACTGATGATGAAGAGGAGG+AGG | - | chr5_1:7804339-7804358 | Msa0714970:CDS | 45.0% |
| GTTGAGGTTTCTTTGTGGGA+AGG | + | chr5_1:7803850-7803869 | None:intergenic | 45.0% | |
| AGAAACCTCAACCCATTCCA+TGG | - | chr5_1:7803858-7803877 | Msa0714970:CDS | 45.0% | |
| ! | GTAGGCTCTGATGAGGTTAA+TGG | + | chr5_1:7803897-7803916 | None:intergenic | 45.0% |
| TCAGAGCCTACCAAGAGAAA+TGG | - | chr5_1:7803906-7803925 | Msa0714970:CDS | 45.0% | |
| !!! | CATTGAAGAGCGGTTTTGGA+AGG | + | chr5_1:7804022-7804041 | None:intergenic | 45.0% |
| ! | ACGACATTGAAGAGCGGTTT+TGG | + | chr5_1:7804026-7804045 | None:intergenic | 45.0% |
| !! | TGAGGCGGTGTTTTTCAGAT+CGG | + | chr5_1:7804078-7804097 | None:intergenic | 45.0% |
| CATGAGACGAAAATACTGCC+AGG | + | chr5_1:7804131-7804150 | None:intergenic | 45.0% | |
| ! | CTGGCAGTATTTTCGTCTCA+TGG | - | chr5_1:7804129-7804148 | Msa0714970:CDS | 45.0% |
| CTCATGGATGATCTTGAACG+CGG | - | chr5_1:7804145-7804164 | Msa0714970:CDS | 45.0% | |
| ! | ATAGGGTGCTTCTGAGAAAG+AGG | + | chr5_1:7804193-7804212 | None:intergenic | 45.0% |
| ! | ATAGTGCTGCTAGGTCTGTT+AGG | - | chr5_1:7804248-7804267 | Msa0714970:CDS | 45.0% |
| ! | AACTGATGATGAAGAGGAGG+AGG | - | chr5_1:7804339-7804358 | Msa0714970:CDS | 45.0% |
| AGTGAGTTCTGCTGGTGAAG+CGG | + | chr5_1:7803822-7803841 | None:intergenic | 50.0% | |
| AGGGAAAGAGTGAGTTCTGC+TGG | + | chr5_1:7803830-7803849 | None:intergenic | 50.0% | |
| ! | TCTTGGTGGGTCCATGGAAT+GGG | + | chr5_1:7803872-7803891 | None:intergenic | 50.0% |
| ! | TTCTTGGTGGGTCCATGGAA+TGG | + | chr5_1:7803873-7803892 | None:intergenic | 50.0% |
| ! | ATGGTTTCTTGGTGGGTCCA+TGG | + | chr5_1:7803878-7803897 | None:intergenic | 50.0% |
| ! | TCTCTTGGTAGGCTCTGATG+AGG | + | chr5_1:7803904-7803923 | None:intergenic | 50.0% |
| ! | TTTCAGATCGGTGGCGTTGA+CGG | + | chr5_1:7804066-7804085 | None:intergenic | 50.0% |
| ! | CTTCTGAGAAAGAGGTCGGA+CGG | + | chr5_1:7804185-7804204 | None:intergenic | 50.0% |
| ! | GGTGCTTCTGAGAAAGAGGT+CGG | + | chr5_1:7804189-7804208 | None:intergenic | 50.0% |
| CTGCTAGGTCTGTTAGGTCA+AGG | - | chr5_1:7804254-7804273 | Msa0714970:CDS | 50.0% | |
| ! | TGATGATGAAGAGGAGGAGG+AGG | - | chr5_1:7804342-7804361 | Msa0714970:CDS | 50.0% |
| GATGGCGAAGAGTTTGACAG+CGG | - | chr5_1:7804384-7804403 | Msa0714970:CDS | 50.0% | |
| TGCAGAGAGGATTGTAGGGT+TGG | - | chr5_1:7804420-7804439 | Msa0714970:CDS | 50.0% | |
| AGTGAGTTCTGCTGGTGAAG+CGG | + | chr5_1:7803822-7803841 | None:intergenic | 50.0% | |
| AGGGAAAGAGTGAGTTCTGC+TGG | + | chr5_1:7803830-7803849 | None:intergenic | 50.0% | |
| ! | TCTTGGTGGGTCCATGGAAT+GGG | + | chr5_1:7803872-7803891 | None:intergenic | 50.0% |
| ! | TTCTTGGTGGGTCCATGGAA+TGG | + | chr5_1:7803873-7803892 | None:intergenic | 50.0% |
| ! | ATGGTTTCTTGGTGGGTCCA+TGG | + | chr5_1:7803878-7803897 | None:intergenic | 50.0% |
| ! | TCTCTTGGTAGGCTCTGATG+AGG | + | chr5_1:7803904-7803923 | None:intergenic | 50.0% |
| ! | TTTCAGATCGGTGGCGTTGA+CGG | + | chr5_1:7804066-7804085 | None:intergenic | 50.0% |
| ! | CTTCTGAGAAAGAGGTCGGA+CGG | + | chr5_1:7804185-7804204 | None:intergenic | 50.0% |
| ! | GGTGCTTCTGAGAAAGAGGT+CGG | + | chr5_1:7804189-7804208 | None:intergenic | 50.0% |
| CTGCTAGGTCTGTTAGGTCA+AGG | - | chr5_1:7804254-7804273 | Msa0714970:CDS | 50.0% | |
| ! | TGATGATGAAGAGGAGGAGG+AGG | - | chr5_1:7804342-7804361 | Msa0714970:CDS | 50.0% |
| GATGGCGAAGAGTTTGACAG+CGG | - | chr5_1:7804384-7804403 | Msa0714970:CDS | 50.0% | |
| TGCAGAGAGGATTGTAGGGT+TGG | - | chr5_1:7804420-7804439 | Msa0714970:CDS | 50.0% | |
| !! | TGGGTCCATGGAATGGGTTG+AGG | + | chr5_1:7803866-7803885 | None:intergenic | 55.0% |
| ! | CTTCTTCCCATTGACTGCCG+CGG | + | chr5_1:7803955-7803974 | None:intergenic | 55.0% |
| CGGCAGTCAATGGGAAGAAG+TGG | - | chr5_1:7803955-7803974 | Msa0714970:CDS | 55.0% | |
| GTAATCGTAGCCGCAACGAG+CGG | + | chr5_1:7803993-7804012 | None:intergenic | 55.0% | |
| !!! | GAAGAGCGGTTTTGGAAGGG+TGG | + | chr5_1:7804018-7804037 | None:intergenic | 55.0% |
| !! | GGCGGTGTTTTTCAGATCGG+TGG | + | chr5_1:7804075-7804094 | None:intergenic | 55.0% |
| CTGCCAGGATCGAGAAGAAG+CGG | + | chr5_1:7804116-7804135 | None:intergenic | 55.0% | |
| GGTCGGACGGAGATAGGTAA+AGG | + | chr5_1:7804172-7804191 | None:intergenic | 55.0% | |
| GAAAGAGGTCGGACGGAGAT+AGG | + | chr5_1:7804178-7804197 | None:intergenic | 55.0% | |
| CGTCGCTATCGTCGGAGATA+GGG | + | chr5_1:7804210-7804229 | None:intergenic | 55.0% | |
| CCTATCTCCGACGATAGCGA+CGG | - | chr5_1:7804208-7804227 | Msa0714970:CDS | 55.0% | |
| GAGGAGGAAGACGAAGAGGA+GGG | - | chr5_1:7804358-7804377 | Msa0714970:CDS | 55.0% | |
| AGACGAAGAGGAGGGAGTGA+TGG | - | chr5_1:7804366-7804385 | Msa0714970:CDS | 55.0% | |
| !! | TGGGTCCATGGAATGGGTTG+AGG | + | chr5_1:7803866-7803885 | None:intergenic | 55.0% |
| ! | CTTCTTCCCATTGACTGCCG+CGG | + | chr5_1:7803955-7803974 | None:intergenic | 55.0% |
| CGGCAGTCAATGGGAAGAAG+TGG | - | chr5_1:7803955-7803974 | Msa0714970:CDS | 55.0% | |
| GTAATCGTAGCCGCAACGAG+CGG | + | chr5_1:7803993-7804012 | None:intergenic | 55.0% | |
| !!! | GAAGAGCGGTTTTGGAAGGG+TGG | + | chr5_1:7804018-7804037 | None:intergenic | 55.0% |
| !! | GGCGGTGTTTTTCAGATCGG+TGG | + | chr5_1:7804075-7804094 | None:intergenic | 55.0% |
| CTGCCAGGATCGAGAAGAAG+CGG | + | chr5_1:7804116-7804135 | None:intergenic | 55.0% | |
| GGTCGGACGGAGATAGGTAA+AGG | + | chr5_1:7804172-7804191 | None:intergenic | 55.0% | |
| GAAAGAGGTCGGACGGAGAT+AGG | + | chr5_1:7804178-7804197 | None:intergenic | 55.0% | |
| CGTCGCTATCGTCGGAGATA+GGG | + | chr5_1:7804210-7804229 | None:intergenic | 55.0% | |
| CCTATCTCCGACGATAGCGA+CGG | - | chr5_1:7804208-7804227 | Msa0714970:CDS | 55.0% | |
| GAGGAGGAAGACGAAGAGGA+GGG | - | chr5_1:7804358-7804377 | Msa0714970:CDS | 55.0% | |
| AGACGAAGAGGAGGGAGTGA+TGG | - | chr5_1:7804366-7804385 | Msa0714970:CDS | 55.0% | |
| GAGTTCTGCTGGTGAAGCGG+TGG | + | chr5_1:7803819-7803838 | None:intergenic | 60.0% | |
| GTAGTCGTAGCCGCTCGTTG+CGG | - | chr5_1:7803980-7803999 | Msa0714970:CDS | 60.0% | |
| AGAAGCGGCGGAGGAAGTAG+CGG | + | chr5_1:7804101-7804120 | None:intergenic | 60.0% | |
| CCAGGATCGAGAAGAAGCGG+CGG | + | chr5_1:7804113-7804132 | None:intergenic | 60.0% | |
| CCGTCGCTATCGTCGGAGAT+AGG | + | chr5_1:7804211-7804230 | None:intergenic | 60.0% | |
| CCTCTCACCGTCGCTATCGT+CGG | + | chr5_1:7804218-7804237 | None:intergenic | 60.0% | |
| CGACGATAGCGACGGTGAGA+GGG | - | chr5_1:7804216-7804235 | Msa0714970:CDS | 60.0% | |
| GGAGGAGGAGGAAGACGAAG+AGG | - | chr5_1:7804354-7804373 | Msa0714970:CDS | 60.0% | |
| GGAGGAGGAAGACGAAGAGG+AGG | - | chr5_1:7804357-7804376 | Msa0714970:CDS | 60.0% | |
| GAGTTCTGCTGGTGAAGCGG+TGG | + | chr5_1:7803819-7803838 | None:intergenic | 60.0% | |
| GTAGTCGTAGCCGCTCGTTG+CGG | - | chr5_1:7803980-7803999 | Msa0714970:CDS | 60.0% | |
| AGAAGCGGCGGAGGAAGTAG+CGG | + | chr5_1:7804101-7804120 | None:intergenic | 60.0% | |
| CCAGGATCGAGAAGAAGCGG+CGG | + | chr5_1:7804113-7804132 | None:intergenic | 60.0% | |
| CCGTCGCTATCGTCGGAGAT+AGG | + | chr5_1:7804211-7804230 | None:intergenic | 60.0% | |
| CCTCTCACCGTCGCTATCGT+CGG | + | chr5_1:7804218-7804237 | None:intergenic | 60.0% | |
| CGACGATAGCGACGGTGAGA+GGG | - | chr5_1:7804216-7804235 | Msa0714970:CDS | 60.0% | |
| GGAGGAGGAGGAAGACGAAG+AGG | - | chr5_1:7804354-7804373 | Msa0714970:CDS | 60.0% | |
| GGAGGAGGAAGACGAAGAGG+AGG | - | chr5_1:7804357-7804376 | Msa0714970:CDS | 60.0% | |
| ! | CCCATTGACTGCCGCGGAGT+GGG | + | chr5_1:7803949-7803968 | None:intergenic | 65.0% |
| CCCACTCCGCGGCAGTCAAT+GGG | - | chr5_1:7803946-7803965 | Msa0714970:CDS | 65.0% | |
| ! | TCCCATTGACTGCCGCGGAG+TGG | + | chr5_1:7803950-7803969 | None:intergenic | 65.0% |
| CGGAGGAAGTAGCGGTGAGG+CGG | + | chr5_1:7804093-7804112 | None:intergenic | 65.0% | |
| GGATCGAGAAGAAGCGGCGG+AGG | + | chr5_1:7804110-7804129 | None:intergenic | 65.0% | |
| CCGCCGCTTCTTCTCGATCC+TGG | - | chr5_1:7804110-7804129 | Msa0714970:CDS | 65.0% | |
| CCGACGATAGCGACGGTGAG+AGG | - | chr5_1:7804215-7804234 | Msa0714970:CDS | 65.0% | |
| ! | CCCATTGACTGCCGCGGAGT+GGG | + | chr5_1:7803949-7803968 | None:intergenic | 65.0% |
| CCCACTCCGCGGCAGTCAAT+GGG | - | chr5_1:7803946-7803965 | Msa0714970:CDS | 65.0% | |
| ! | TCCCATTGACTGCCGCGGAG+TGG | + | chr5_1:7803950-7803969 | None:intergenic | 65.0% |
| CGGAGGAAGTAGCGGTGAGG+CGG | + | chr5_1:7804093-7804112 | None:intergenic | 65.0% | |
| GGATCGAGAAGAAGCGGCGG+AGG | + | chr5_1:7804110-7804129 | None:intergenic | 65.0% | |
| CCGCCGCTTCTTCTCGATCC+TGG | - | chr5_1:7804110-7804129 | Msa0714970:CDS | 65.0% | |
| CCGACGATAGCGACGGTGAG+AGG | - | chr5_1:7804215-7804234 | Msa0714970:CDS | 65.0% | |
| CTCAAACGGGGCCCACTCCG+CGG | - | chr5_1:7803935-7803954 | Msa0714970:CDS | 70.0% | |
| GCCCACTCCGCGGCAGTCAA+TGG | - | chr5_1:7803945-7803964 | Msa0714970:CDS | 70.0% | |
| CGGCGGAGGAAGTAGCGGTG+AGG | + | chr5_1:7804096-7804115 | None:intergenic | 70.0% | |
| CTCAAACGGGGCCCACTCCG+CGG | - | chr5_1:7803935-7803954 | Msa0714970:CDS | 70.0% | |
| GCCCACTCCGCGGCAGTCAA+TGG | - | chr5_1:7803945-7803964 | Msa0714970:CDS | 70.0% | |
| CGGCGGAGGAAGTAGCGGTG+AGG | + | chr5_1:7804096-7804115 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 7803812 | 7804576 | 7803812 | ID=Msa0714970;Name=Msa0714970 |
| chr5_1 | mRNA | 7803812 | 7804576 | 7803812 | ID=Msa0714970-mRNA-1;Parent=Msa0714970;Name=Msa0714970-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|254 |
| chr5_1 | exon | 7803812 | 7804576 | 7803812 | ID=Msa0714970-mRNA-1:exon:3267;Parent=Msa0714970-mRNA-1 |
| chr5_1 | CDS | 7803812 | 7804576 | 7803812 | ID=Msa0714970-mRNA-1:cds;Parent=Msa0714970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
