AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0717320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0717320 MtrunA17_Chr5g0405211 98.295 352 6 0 1 352 1 352 0.0 731
Msa0717320 MtrunA17_Chr8g0372121 63.662 355 76 9 4 351 2 310 3.11e-151 428
Msa0717320 MtrunA17_Chr4g0018391 57.278 316 95 8 6 294 5 307 2.83e-114 335
Msa0717320 MtrunA17_Chr4g0056541 56.410 312 99 6 6 294 5 302 1.03e-111 330
Msa0717320 MtrunA17_Chr5g0398971 54.455 303 115 9 6 294 5 298 2.28e-105 313
Msa0717320 MtrunA17_Chr1g0200561 49.249 333 133 8 4 320 15 327 4.27e-101 302
Msa0717320 MtrunA17_Chr2g0309331 49.338 302 127 6 3 290 5 294 5.77e-91 276
Msa0717320 MtrunA17_Chr8g0346001 43.440 343 133 7 5 297 12 343 1.14e-84 263
Msa0717320 MtrunA17_Chr4g0017921 73.418 158 41 1 1 158 1 157 1.99e-84 259
Msa0717320 MtrunA17_Chr3g0091921 50.526 190 81 4 8 193 16 196 3.44e-60 196
Msa0717320 MtrunA17_Chr2g0309891 56.209 153 63 2 8 157 6 157 1.90e-59 195
Msa0717320 MtrunA17_Chr6g0484441 54.545 154 67 1 4 157 1 151 5.87e-59 193
Msa0717320 MtrunA17_Chr4g0060931 52.047 171 75 3 8 174 17 184 6.58e-59 194
Msa0717320 MtrunA17_Chr6g0481091 55.263 152 65 2 8 157 6 156 5.13e-58 188
Msa0717320 MtrunA17_Chr3g0139331 40.000 245 129 5 5 235 8 248 4.41e-57 189
Msa0717320 MtrunA17_Chr1g0183741 50.000 176 81 4 1 174 3 173 1.33e-56 185
Msa0717320 MtrunA17_Chr3g0109821 53.205 156 69 2 8 160 6 160 2.65e-56 194
Msa0717320 MtrunA17_Chr5g0433781 52.903 155 70 2 8 160 6 159 5.23e-56 193
Msa0717320 MtrunA17_Chr7g0253011 54.375 160 62 4 8 159 17 173 1.43e-55 186
Msa0717320 MtrunA17_Chr7g0261411 53.503 157 66 4 1 155 3 154 2.97e-55 182
Msa0717320 MtrunA17_Chr2g0316971 51.515 165 65 4 5 160 20 178 5.03e-55 184
Msa0717320 MtrunA17_Chr1g0147421 42.857 203 96 4 5 204 24 209 5.36e-55 184
Msa0717320 MtrunA17_Chr6g0453451 53.205 156 66 2 8 159 20 172 1.17e-54 182
Msa0717320 MtrunA17_Chr4g0042561 50.909 165 71 3 1 158 1 162 1.19e-54 180
Msa0717320 MtrunA17_Chr2g0312321 52.532 158 65 4 4 157 7 158 3.11e-54 180
Msa0717320 MtrunA17_Chr5g0417791 50.318 157 69 2 8 158 3 156 3.50e-54 179
Msa0717320 MtrunA17_Chr8g0361731 36.458 288 152 11 2 266 8 287 4.57e-54 182
Msa0717320 MtrunA17_Chr7g0252971 46.196 184 79 4 1 168 1 180 4.77e-54 181
Msa0717320 MtrunA17_Chr3g0130731 49.133 173 71 4 8 175 7 167 1.34e-53 178
Msa0717320 MtrunA17_Chr5g0417001 45.699 186 84 5 2 175 8 188 2.62e-53 180
Msa0717320 MtrunA17_Chr6g0453131 46.857 175 78 4 10 172 17 188 2.65e-53 180
Msa0717320 MtrunA17_Chr4g0054791 46.073 191 93 4 6 187 4 193 2.67e-53 178
Msa0717320 MtrunA17_Chr7g0214071 50.299 167 75 3 5 169 12 172 3.32e-53 176
Msa0717320 MtrunA17_Chr2g0318081 44.670 197 101 3 8 202 16 206 4.44e-53 179
Msa0717320 MtrunA17_Chr2g0318101 47.126 174 74 4 3 161 10 180 6.18e-52 176
Msa0717320 MtrunA17_Chr7g0217721 48.387 186 76 3 1 169 12 194 8.26e-52 175
Msa0717320 MtrunA17_Chr6g0461661 49.398 166 75 4 8 167 18 180 2.68e-51 174
Msa0717320 MtrunA17_Chr1g0197351 44.175 206 100 6 6 197 40 244 4.90e-51 176
Msa0717320 MtrunA17_Chr5g0400461 50.943 159 65 4 8 157 6 160 7.41e-51 172
Msa0717320 MtrunA17_Chr8g0384721 51.592 157 66 3 8 158 7 159 9.97e-51 171
Msa0717320 MtrunA17_Chr4g0047841 42.487 193 81 4 8 173 15 204 1.21e-50 172
Msa0717320 MtrunA17_Chr3g0144271 45.238 210 95 6 5 211 20 212 1.94e-50 174
Msa0717320 MtrunA17_Chr3g0124761 49.405 168 75 4 8 169 7 170 2.71e-50 169
Msa0717320 MtrunA17_Chr7g0263931 49.068 161 71 3 5 157 8 165 1.20e-49 169
Msa0717320 MtrunA17_Chr8g0359921 46.875 160 78 2 8 163 14 170 8.76e-49 167
Msa0717320 MtrunA17_Chr7g0217711 55.797 138 58 1 1 138 12 146 1.04e-48 162
Msa0717320 MtrunA17_Chr3g0130101 49.669 151 71 3 10 157 9 157 1.17e-48 167
Msa0717320 MtrunA17_Chr5g0428991 52.288 153 70 2 8 158 25 176 1.97e-48 172
Msa0717320 MtrunA17_Chr3g0128111 51.678 149 69 2 11 157 45 192 2.35e-48 163
Msa0717320 MtrunA17_Chr2g0326361 49.045 157 69 3 9 157 15 168 1.05e-46 161
Msa0717320 MtrunA17_Chr3g0128151 50.658 152 72 2 8 157 22 172 1.59e-46 166
Msa0717320 MtrunA17_Chr1g0201021 52.672 131 61 1 10 140 21 150 3.41e-46 165
Msa0717320 MtrunA17_Chr2g0311651 41.000 200 98 4 8 189 21 218 1.45e-45 158
Msa0717320 MtrunA17_Chr5g0442771 43.114 167 78 3 5 157 15 178 2.51e-44 154
Msa0717320 MtrunA17_Chr3g0092671 45.860 157 82 3 10 164 7 162 6.22e-44 159
Msa0717320 MtrunA17_Chr4g0076731 46.053 152 78 2 7 157 53 201 9.54e-44 156
Msa0717320 MtrunA17_Chr8g0364791 46.753 154 73 3 10 158 8 157 1.43e-43 155
Msa0717320 MtrunA17_Chr4g0038751 44.311 167 80 4 1 160 4 164 1.69e-43 152
Msa0717320 MtrunA17_Chr2g0311661 44.444 171 75 4 8 160 20 188 1.92e-43 152
Msa0717320 MtrunA17_Chr1g0197361 45.223 157 83 3 10 164 10 165 6.10e-43 157
Msa0717320 MtrunA17_Chr8g0384201 46.104 154 74 3 10 158 8 157 2.08e-42 154
Msa0717320 MtrunA17_Chr8g0385991 43.860 171 81 5 8 168 14 179 4.45e-40 141
Msa0717320 MtrunA17_Chr3g0131911 45.181 166 74 4 8 161 14 174 1.21e-38 137
Msa0717320 MtrunA17_Chr2g0321631 45.912 159 71 7 9 155 5 160 1.61e-35 129
Msa0717320 MtrunA17_Chr4g0026141 42.945 163 79 5 4 155 1 160 2.06e-35 130
Msa0717320 MtrunA17_Chr8g0345671 44.295 149 75 5 8 153 11 154 1.90e-33 127
Msa0717320 MtrunA17_Chr3g0113001 50.877 114 49 3 52 158 4 117 2.99e-33 125
Msa0717320 MtrunA17_Chr4g0050701 39.375 160 76 4 8 157 11 159 1.35e-31 117
Msa0717320 MtrunA17_Chr8g0345691 44.295 149 75 5 8 153 12 155 2.31e-31 122
Msa0717320 MtrunA17_Chr2g0321741 36.145 166 83 4 28 193 12 154 3.82e-30 118
Msa0717320 MtrunA17_Chr8g0345711 36.905 168 88 6 4 155 8 173 6.72e-30 112
Msa0717320 MtrunA17_Chr7g0266701 36.646 161 91 4 8 157 4 164 5.58e-29 112
Msa0717320 MtrunA17_Chr3g0113031 43.382 136 61 4 74 201 3 130 1.33e-28 112
Msa0717320 MtrunA17_Chr8g0345731 41.353 133 72 4 8 135 24 155 1.43e-25 101
Msa0717320 MtrunA17_Chr7g0243371 48.780 82 40 1 64 143 17 98 1.12e-22 91.7
Msa0717320 MtrunA17_Chr8g0345721 34.524 168 73 6 4 135 26 192 3.25e-22 93.2
Msa0717320 MtrunA17_Chr8g0345701 36.735 147 72 6 6 135 5 147 4.37e-22 92.0
Msa0717320 MtrunA17_Chr8g0345741 41.667 120 65 4 19 135 2 119 2.67e-21 89.0
Msa0717320 MtrunA17_Chr8g0384351 35.802 162 79 7 8 167 10 148 9.49e-21 88.6
Msa0717320 MtrunA17_Chr3g0130321 27.439 164 94 6 8 156 7 160 1.38e-13 68.9
Msa0717320 MtrunA17_Chr7g0251661 31.298 131 85 4 5 134 7 133 1.60e-13 67.8
Msa0717320 MtrunA17_Chr7g0251651 30.469 128 84 4 8 134 18 141 4.51e-13 67.4
Msa0717320 MtrunA17_Chr7g0251671 28.058 139 95 4 1 138 3 137 5.37e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0717320 AT2G18060.3 62.334 377 103 14 1 351 1 364 9.16e-152 432
Msa0717320 AT2G18060.1 62.334 377 103 14 1 351 1 364 9.16e-152 432
Msa0717320 AT4G36160.1 64.545 330 87 12 1 310 1 320 1.17e-141 406
Msa0717320 AT4G36160.3 64.545 330 87 12 1 310 1 320 1.17e-141 406
Msa0717320 AT4G36160.2 64.545 330 87 12 1 310 5 324 1.17e-141 407
Msa0717320 AT5G66300.1 59.272 302 83 9 6 291 9 286 1.62e-117 342
Msa0717320 AT1G12260.1 51.170 342 110 8 6 294 5 342 7.46e-107 318
Msa0717320 AT1G62700.1 49.575 353 126 7 6 315 5 348 6.08e-106 316
Msa0717320 AT1G62700.2 49.575 353 126 7 6 315 5 348 6.08e-106 316
Msa0717320 AT1G12260.2 54.110 292 124 4 6 294 5 289 5.70e-103 307
Msa0717320 AT1G71930.2 50.847 295 121 5 4 293 5 280 9.14e-98 293
Msa0717320 AT1G71930.1 50.847 295 121 5 4 293 5 280 9.14e-98 293
Msa0717320 AT5G62380.2 50.498 301 130 6 1 291 1 292 1.41e-95 288
Msa0717320 AT5G62380.1 50.498 301 130 6 1 291 1 292 1.41e-95 288
Msa0717320 AT2G46770.1 50.163 307 103 9 5 291 13 289 2.96e-90 275
Msa0717320 AT1G32770.1 46.906 307 126 8 5 292 13 301 1.06e-83 258
Msa0717320 AT2G18060.2 52.941 289 98 14 88 351 1 276 5.49e-83 253
Msa0717320 AT4G10350.1 71.519 158 43 1 3 158 4 161 3.96e-82 253
Msa0717320 AT3G61910.1 47.923 313 93 9 5 292 8 275 5.03e-82 253
Msa0717320 AT1G33280.1 70.253 158 46 1 1 158 1 157 3.31e-81 250
Msa0717320 AT1G79580.3 48.026 304 121 9 8 289 17 305 4.05e-80 249
Msa0717320 AT1G79580.5 48.026 304 121 9 8 289 17 305 4.05e-80 249
Msa0717320 AT1G79580.4 48.026 304 121 9 8 289 17 305 4.05e-80 249
Msa0717320 AT1G79580.2 48.026 304 121 9 8 289 17 305 4.05e-80 249
Msa0717320 AT1G79580.1 48.026 304 121 9 8 289 17 305 4.05e-80 249
Msa0717320 AT3G18400.1 56.329 158 65 2 4 160 1 155 3.13e-62 201
Msa0717320 AT3G17730.1 54.430 158 69 2 8 163 6 162 1.82e-59 192
Msa0717320 AT5G39610.1 52.695 167 72 3 8 170 20 183 8.50e-59 192
Msa0717320 AT2G24430.2 52.976 168 69 4 5 169 13 173 2.16e-58 192
Msa0717320 AT2G24430.1 52.976 168 69 4 5 169 13 173 2.16e-58 192
Msa0717320 AT5G07680.2 52.410 166 72 3 8 169 3 165 4.55e-58 191
Msa0717320 AT5G07680.1 52.410 166 72 3 8 169 17 179 7.77e-58 191
Msa0717320 AT5G61430.1 55.844 154 61 3 8 157 16 166 1.49e-57 190
Msa0717320 AT1G69490.1 51.250 160 69 2 5 158 6 162 7.63e-57 186
Msa0717320 AT1G76420.1 55.975 159 64 3 2 157 16 171 1.75e-56 187
Msa0717320 AT5G17260.1 54.248 153 66 2 8 157 6 157 1.84e-56 191
Msa0717320 AT3G03200.1 54.248 153 66 2 8 157 6 157 6.78e-56 189
Msa0717320 AT1G65910.1 54.605 152 66 2 8 157 6 156 8.73e-56 192
Msa0717320 AT3G10490.1 44.059 202 103 3 3 201 22 216 1.86e-55 181
Msa0717320 AT3G29035.1 51.875 160 70 2 8 163 24 180 1.87e-55 184
Msa0717320 AT1G56010.2 41.518 224 113 6 4 220 15 227 1.38e-54 182
Msa0717320 AT3G10490.2 41.818 220 117 4 3 219 22 233 2.13e-54 185
Msa0717320 AT1G54330.1 56.000 150 64 2 8 157 6 153 2.44e-54 181
Msa0717320 AT5G18270.1 50.877 171 73 5 8 170 21 188 1.16e-53 180
Msa0717320 AT3G10480.1 44.792 192 96 3 6 194 25 209 1.68e-53 182
Msa0717320 AT5G53950.1 51.205 166 72 3 8 167 17 179 2.71e-53 180
Msa0717320 AT3G15170.1 51.497 167 72 4 5 165 17 180 3.80e-53 178
Msa0717320 AT5G18270.2 50.292 171 74 5 8 170 21 188 4.81e-53 178
Msa0717320 AT3G12977.1 49.383 162 76 3 4 162 14 172 5.41e-53 176
Msa0717320 AT5G46590.1 53.205 156 68 3 6 157 4 158 5.95e-53 177
Msa0717320 AT4G10350.2 73.148 108 27 1 53 158 7 114 6.85e-53 177
Msa0717320 AT5G46590.2 58.088 136 55 2 6 140 4 138 2.42e-52 175
Msa0717320 AT3G04060.1 49.697 165 75 4 8 167 20 181 5.07e-52 176
Msa0717320 AT3G04070.2 48.795 166 68 4 6 157 8 170 7.51e-52 176
Msa0717320 AT3G10480.2 44.792 192 95 4 6 194 25 208 1.26e-51 177
Msa0717320 AT4G27410.2 49.693 163 76 3 8 168 14 172 1.38e-51 173
Msa0717320 AT5G63790.1 48.235 170 77 3 8 170 50 215 2.40e-51 173
Msa0717320 AT5G63790.2 48.235 170 77 3 8 170 60 225 2.42e-51 174
Msa0717320 AT4G17980.1 51.266 158 70 3 6 157 4 160 2.86e-51 171
Msa0717320 AT4G17980.2 51.266 158 70 3 6 157 4 160 4.73e-51 172
Msa0717320 AT2G43000.1 49.057 159 75 3 10 165 20 175 6.32e-51 171
Msa0717320 AT3G15500.1 50.000 156 73 2 7 160 13 165 7.00e-51 172
Msa0717320 AT5G04410.1 46.927 179 84 5 6 180 7 178 7.79e-51 178
Msa0717320 AT2G33480.2 49.045 157 74 1 8 164 15 165 9.42e-51 170
Msa0717320 AT4G28530.1 41.600 250 111 10 1 229 3 238 1.41e-50 172
Msa0717320 AT1G77450.1 51.613 155 66 3 9 158 11 161 1.94e-50 169
Msa0717320 AT5G39820.1 41.237 194 84 4 1 169 13 201 2.24e-50 171
Msa0717320 AT5G08790.1 50.625 160 68 3 8 160 7 162 5.50e-50 169
Msa0717320 AT2G33480.1 49.057 159 73 2 8 164 15 167 7.11e-50 168
Msa0717320 AT3G10500.1 50.323 155 72 3 6 157 7 159 8.31e-50 175
Msa0717320 AT1G52890.1 49.677 155 73 2 8 160 14 165 9.89e-50 169
Msa0717320 AT3G10480.3 39.286 224 95 3 6 194 25 242 1.13e-49 174
Msa0717320 AT1G61110.1 47.619 168 70 4 8 160 16 180 1.18e-49 169
Msa0717320 AT1G33060.1 53.165 158 68 4 3 157 20 174 3.00e-49 175
Msa0717320 AT1G33060.2 53.165 158 68 4 3 157 20 174 3.27e-49 175
Msa0717320 AT4G35580.1 50.898 167 78 3 3 167 5 169 6.83e-49 172
Msa0717320 AT1G01720.1 49.682 157 69 3 8 158 7 159 7.04e-49 166
Msa0717320 AT4G27410.3 46.893 177 77 4 8 168 14 189 9.68e-49 166
Msa0717320 AT4G35580.2 48.876 178 87 3 3 178 5 180 1.03e-48 172
Msa0717320 AT4G35580.3 50.898 167 78 3 3 167 5 169 1.05e-48 172
Msa0717320 AT3G04070.1 53.676 136 55 3 6 136 8 140 7.80e-48 165
Msa0717320 AT3G15510.1 49.068 161 64 4 12 157 21 178 8.69e-48 165
Msa0717320 AT1G26870.1 45.143 175 78 4 2 162 10 180 1.06e-47 166
Msa0717320 AT5G13180.1 51.250 160 64 5 8 161 14 165 3.81e-47 160
Msa0717320 AT5G24590.2 53.247 154 68 4 8 158 13 165 4.32e-47 166
Msa0717320 AT3G49530.2 50.000 158 74 5 3 157 9 164 2.84e-46 162
Msa0717320 AT3G49530.1 50.000 158 74 5 3 157 9 164 6.15e-46 163
Msa0717320 AT1G32510.1 45.679 162 77 4 6 157 4 164 2.06e-45 157
Msa0717320 AT2G27300.1 42.690 171 91 3 1 171 7 170 4.34e-45 157
Msa0717320 AT2G02450.1 45.395 152 79 2 7 157 50 198 2.02e-44 157
Msa0717320 AT2G02450.2 45.395 152 79 2 7 157 50 198 2.70e-44 157
Msa0717320 AT1G34190.1 44.371 151 79 3 10 157 18 166 1.27e-42 155
Msa0717320 AT1G34180.3 45.865 133 71 1 10 142 18 149 1.53e-42 153
Msa0717320 AT5G22290.1 42.424 165 88 3 3 166 15 173 1.58e-42 151
Msa0717320 AT1G34180.1 45.865 133 71 1 10 142 18 149 3.72e-42 154
Msa0717320 AT5G64060.1 44.737 152 77 3 10 157 8 156 5.99e-42 150
Msa0717320 AT5G09330.5 46.053 152 75 3 10 157 8 156 2.47e-41 151
Msa0717320 AT5G09330.2 46.053 152 75 3 10 157 8 156 2.47e-41 151
Msa0717320 AT5G09330.4 46.053 152 75 3 10 157 8 156 2.47e-41 151
Msa0717320 AT5G09330.3 46.053 152 75 3 10 157 8 156 2.47e-41 151
Msa0717320 AT5G09330.1 46.053 152 75 3 10 157 8 156 2.47e-41 151
Msa0717320 AT3G12910.1 44.318 176 73 6 10 165 23 193 4.52e-41 146
Msa0717320 AT1G34180.4 40.373 161 83 3 10 157 18 178 4.65e-41 150
Msa0717320 AT1G52880.1 45.509 167 70 4 12 162 21 182 6.16e-41 146
Msa0717320 AT2G17040.1 42.208 154 80 3 10 160 8 155 8.20e-41 145
Msa0717320 AT1G34180.2 43.056 144 71 2 10 142 18 161 1.17e-40 150
Msa0717320 AT5G04395.1 44.516 155 73 3 3 144 23 177 1.64e-40 141
Msa0717320 AT1G56010.1 43.478 161 77 4 66 220 8 160 4.10e-39 140
Msa0717320 AT3G44290.2 44.800 125 67 1 10 134 16 138 1.75e-38 137
Msa0717320 AT3G44290.1 44.800 125 67 1 10 134 16 138 1.04e-37 138
Msa0717320 AT5G61430.2 61.224 98 34 2 64 157 6 103 1.55e-37 136
Msa0717320 AT1G32870.1 43.506 154 80 3 8 157 10 160 1.82e-36 138
Msa0717320 AT1G32870.2 43.506 154 80 3 8 157 10 160 1.83e-36 138
Msa0717320 AT3G12977.2 52.212 113 48 3 53 162 10 119 2.31e-36 131
Msa0717320 AT1G32870.3 43.506 154 80 3 8 157 46 196 3.18e-36 138
Msa0717320 AT2G33480.3 49.515 103 50 1 64 164 8 110 1.02e-30 116
Msa0717320 AT5G22380.1 43.478 138 68 5 4 134 1 135 3.55e-27 107
Msa0717320 AT4G28530.2 43.165 139 56 4 1 120 3 137 1.12e-26 108
Msa0717320 AT4G01520.1 37.748 151 85 5 9 154 5 151 5.48e-26 105
Msa0717320 AT3G44350.2 37.821 156 85 6 11 157 8 160 6.17e-26 104
Msa0717320 AT1G02230.1 42.941 170 83 9 9 170 4 167 6.49e-26 107
Msa0717320 AT3G44350.1 38.931 131 71 4 11 135 8 135 1.12e-25 101
Msa0717320 AT4G01540.3 37.584 149 84 5 11 154 7 151 9.12e-25 104
Msa0717320 AT4G01540.1 37.584 149 84 5 11 154 7 151 1.25e-24 104
Msa0717320 AT4G01540.4 37.584 149 84 5 11 154 7 151 1.30e-24 103
Msa0717320 AT4G01540.2 37.584 149 84 5 11 154 7 151 1.39e-24 103
Msa0717320 AT5G64530.1 32.961 179 87 6 8 168 3 166 1.79e-24 99.0
Msa0717320 AT4G01550.1 37.086 151 87 4 11 157 7 153 2.16e-24 103
Msa0717320 AT3G04420.2 40.310 129 72 3 9 134 4 130 4.86e-24 100
Msa0717320 AT1G02250.1 39.645 169 89 8 9 170 4 166 1.32e-23 100
Msa0717320 AT3G04420.1 40.310 129 72 3 9 134 4 130 1.65e-23 100
Msa0717320 AT5G64530.2 39.695 131 62 5 8 136 3 118 2.16e-23 95.1
Msa0717320 AT1G01010.1 37.662 154 78 7 11 153 6 152 1.14e-22 98.6
Msa0717320 AT2G43000.2 45.833 96 49 2 73 165 2 97 6.27e-22 92.4
Msa0717320 AT3G10490.4 35.971 139 79 3 84 219 2 133 9.90e-22 95.1
Msa0717320 AT3G10490.3 35.971 139 79 3 84 219 2 133 9.90e-22 95.1
Msa0717320 AT1G02220.1 39.231 130 71 4 8 134 3 127 9.31e-20 90.1
Msa0717320 AT5G50820.1 37.857 140 62 6 8 138 17 140 4.50e-19 84.3
Msa0717320 AT3G56530.1 27.815 151 105 2 7 155 51 199 6.46e-17 80.9
Msa0717320 AT5G22290.2 41.558 77 41 1 90 166 2 74 3.94e-15 74.3
Msa0717320 AT5G14000.1 26.786 168 115 3 8 173 15 176 9.68e-15 72.8
Msa0717320 AT5G14000.2 29.771 131 85 2 8 136 15 140 1.14e-13 68.6
Msa0717320 AT3G55210.1 24.699 166 108 5 3 155 6 167 2.36e-12 67.0
Msa0717320 AT3G04430.1 34.074 135 72 6 14 135 6 136 1.34e-11 63.5

Find 80 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATAAGATGAAACTAAT+TGG 0.196107 5_1:+11099195 Msa0717320:CDS
AGGCTTGAATCTGATGAAAA+TGG 0.260946 5_1:+11099294 Msa0717320:CDS
AGTTCAGATTGCAGTGATAT+TGG 0.262862 5_1:+11101426 Msa0717320:CDS
TGTTACTGCAGCAGGGTAAT+AGG 0.270150 5_1:+11101367 Msa0717320:CDS
GAGCTACCATGGCTGGGTTT+TGG 0.285122 5_1:+11099145 Msa0717320:CDS
CAATCAGATTTCTGTCCATT+AGG 0.301864 5_1:-11099255 None:intergenic
AATCAGATTTCTGTCCATTA+GGG 0.308366 5_1:-11099254 None:intergenic
CTGTTAGTTCTTGTCCCTGT+TGG 0.308789 5_1:-11099123 None:intergenic
ATAATAATAGCAACCTGTTT+TGG 0.310133 5_1:-11101185 None:intergenic
CTTACACATGTTATAACTTT+GGG 0.324312 5_1:-11101028 None:intergenic
GTGCTTGGCCTCTTTACTAA+TGG 0.340736 5_1:-11101120 None:intergenic
TAGTACTAGTACAAATAAAA+TGG 0.342897 5_1:-11101490 None:intergenic
GGAGTGTTGTTGTCAAGTTT+TGG 0.348018 5_1:+11101309 Msa0717320:CDS
GCTTACACATGTTATAACTT+TGG 0.349128 5_1:-11101029 None:intergenic
TTGAGATGCATGCGTCAAAA+TGG 0.352210 5_1:+11101644 Msa0717320:three_prime_UTR
GTTCAGATTGCAGTGATATT+GGG 0.368792 5_1:+11101427 Msa0717320:CDS
ACTCCATGATAGAAAATTAC+TGG 0.373275 5_1:-11098676 None:intergenic
CTTGAGATTAGTTGATCAAT+TGG 0.382802 5_1:-11100985 None:intergenic
ATGATAAGATGAAACTAATT+GGG 0.389752 5_1:+11099196 Msa0717320:CDS
ATTGGATCATGCATGAATAT+AGG 0.391373 5_1:+11099274 Msa0717320:CDS
GGCATTGATGTTACTGCAGC+AGG 0.393119 5_1:+11101359 Msa0717320:CDS
CTCTAGTAATATTTCTCATC+AGG 0.402272 5_1:+11097179 Msa0717320:five_prime_UTR
GTTACTGCAGCAGGGTAATA+GGG 0.411682 5_1:+11101368 Msa0717320:CDS
CTACAAATACAGTTACTGAT+TGG 0.424836 5_1:+11101229 Msa0717320:CDS
CATGTGTCCCACCAGGGTTT+CGG 0.436059 5_1:+11098708 Msa0717320:CDS
CCAACTGATGAAGAACTTGT+TGG 0.437262 5_1:+11098737 Msa0717320:CDS
CTTTGGGATAAATAGCTTTG+AGG 0.440208 5_1:-11101012 None:intergenic
ACTAACAGAGCTACCATGGC+TGG 0.441475 5_1:+11099138 Msa0717320:CDS
TCTCAATTTGCACTCATTCA+AGG 0.443582 5_1:-11101627 None:intergenic
CTTCATTGCCATTAGTAAAG+AGG 0.446048 5_1:+11101112 Msa0717320:CDS
ATGACATTAACGACCAAAAC+AGG 0.448853 5_1:+11101172 Msa0717320:CDS
CTCTTTACTAATGGCAATGA+AGG 0.455370 5_1:-11101111 None:intergenic
ATGGAGTCATGTGTCCCACC+AGG 0.483355 5_1:+11098701 Msa0717320:CDS
ATGAAATGGCAGAGAGATGC+AGG 0.483796 5_1:+11099043 Msa0717320:intron
TACAAAGGAAGAGCCCCTAA+TGG 0.487100 5_1:+11099240 Msa0717320:CDS
CTCAATTTGCACTCATTCAA+GGG 0.494879 5_1:-11101626 None:intergenic
CCAACAAGTTCTTCATCAGT+TGG 0.496930 5_1:-11098737 None:intergenic
CAACAAGTTCTTCATCAGTT+GGG 0.501223 5_1:-11098736 None:intergenic
AGAAGTAGACAAAATGATCA+AGG 0.501566 5_1:-11097150 None:intergenic
CTAATGGACAGAAATCTGAT+TGG 0.503538 5_1:+11099256 Msa0717320:CDS
ATTGAACCATGGGATCTTCA+AGG 0.511774 5_1:+11098833 Msa0717320:CDS
TGGCAGAGAGATGCAGGATC+GGG 0.511955 5_1:+11099049 Msa0717320:intron
TCTTTATCGTATTGAACCAT+GGG 0.515850 5_1:+11098823 Msa0717320:CDS
ATCAATGCCATGTCCGAGCT+AGG 0.517059 5_1:-11101345 None:intergenic
CTATGAAGAAGCTGCAAGTA+GGG 0.522407 5_1:+11100942 Msa0717320:CDS
TGGTGGGACACATGACTCCA+TGG 0.525120 5_1:-11098699 None:intergenic
CATGAAGTTGAAACTGATCA+AGG 0.526644 5_1:+11101288 Msa0717320:CDS
CGGTTTGAGTTGAAGAAGAG+AGG 0.527130 5_1:-11097123 None:intergenic
TGATGAAAATGGACCTCCAC+AGG 0.528524 5_1:+11099305 Msa0717320:CDS
ATCTTTATCGTATTGAACCA+TGG 0.534260 5_1:+11098822 Msa0717320:CDS
ATGGCAGAGAGATGCAGGAT+CGG 0.542557 5_1:+11099048 Msa0717320:intron
TATATAATATAAATGTTCCA+TGG 0.546655 5_1:+11101525 Msa0717320:three_prime_UTR
AGATGAAACTAATTGGGATG+AGG 0.547240 5_1:+11099202 Msa0717320:CDS
GACAAAATGATCAAGGAGCT+CGG 0.547669 5_1:-11097143 None:intergenic
AACAAATAATAACCCTAGCT+CGG 0.552141 5_1:+11101332 Msa0717320:CDS
CGATCTCTCTGATAACATCA+AGG 0.569395 5_1:-11098799 None:intergenic
TCTATGAAGAAGCTGCAAGT+AGG 0.576413 5_1:+11100941 Msa0717320:CDS
GGTTTGAGTTGAAGAAGAGA+GGG 0.576663 5_1:-11097122 None:intergenic
TCAATGCCATGTCCGAGCTA+GGG 0.581122 5_1:-11101344 None:intergenic
AAGCACAATGTCTCTAGTAT+CGG 0.584153 5_1:+11101137 Msa0717320:CDS
TAATAACCCTAGCTCGGACA+TGG 0.592989 5_1:+11101338 Msa0717320:CDS
GATACTAGAGACATTGTGCT+TGG 0.594750 5_1:-11101135 None:intergenic
CAATTGATCAACTAATCTCA+AGG 0.597995 5_1:+11100986 Msa0717320:CDS
AAGAACTAACAGAGCTACCA+TGG 0.599903 5_1:+11099134 Msa0717320:CDS
ACATATATAATATATATCCA+TGG 0.602366 5_1:-11101542 None:intergenic
GTTGGGTGGAACCGAAACCC+TGG 0.606391 5_1:-11098719 None:intergenic
CAAGTTCTTCATCAGTTGGG+TGG 0.606733 5_1:-11098733 None:intergenic
ATCAGATTTCTGTCCATTAG+GGG 0.607393 5_1:-11099253 None:intergenic
GGTTGATTAGTTACCTGTGG+AGG 0.611776 5_1:-11099318 None:intergenic
TGGAGTCATGTGTCCCACCA+GGG 0.614596 5_1:+11098702 Msa0717320:CDS
CTAACAGAGCTACCATGGCT+GGG 0.617618 5_1:+11099139 Msa0717320:CDS
TTGATCAATTGGATCCACAA+TGG 0.624058 5_1:-11100974 None:intergenic
TGTATACCTTGAAGATCCCA+TGG 0.629021 5_1:-11098839 None:intergenic
AATGAAGGACTTTCAAGCTG+AGG 0.644381 5_1:-11101096 None:intergenic
AGCTTTCCAAAACCCAGCCA+TGG 0.648009 5_1:-11099151 None:intergenic
GCATTGATGTTACTGCAGCA+GGG 0.654680 5_1:+11101360 Msa0717320:CDS
TAGGGTCAACAATTCCATTG+TGG 0.657837 5_1:+11100960 Msa0717320:CDS
GGTATGAAGAGCAGAATGAG+TGG 0.672358 5_1:+11099070 Msa0717320:CDS
GGGTGGAACCGAAACCCTGG+TGG 0.689016 5_1:-11098716 None:intergenic
GGTGGAACCGAAACCCTGGT+GGG 0.689627 5_1:-11098715 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTTATGAAATATAGTA+AGG + chr5_1:11098051-11098070 Msa0717320:intron 10.0%
!!! AAAAAATATATGATAATGTT+AGG - chr5_1:11099368-11099387 None:intergenic 10.0%
!! GTTAATTAATTAACTTATCT+AGG + chr5_1:11098020-11098039 Msa0717320:intron 15.0%
!!! TATAAAGTGTTTTAGTAAAA+AGG - chr5_1:11098468-11098487 None:intergenic 15.0%
!! AAATAATTATGTGAATGAAA+TGG + chr5_1:11099029-11099048 Msa0717320:intron 15.0%
!! TAGAAAAAAATAAAAGCAAA+AGG + chr5_1:11100160-11100179 Msa0717320:intron 15.0%
!! TTTATTACGAATAAAAGTTT+AGG - chr5_1:11100395-11100414 None:intergenic 15.0%
!! TATATAATATAAATGTTCCA+TGG + chr5_1:11101525-11101544 Msa0717320:three_prime_UTR 15.0%
!! ACATATATAATATATATCCA+TGG - chr5_1:11101545-11101564 None:intergenic 15.0%
!!! TATTTTTGTAAAAATATGTG+TGG + chr5_1:11101584-11101603 Msa0717320:three_prime_UTR 15.0%
!! ATCTTTCATTTCTATACTAT+AGG + chr5_1:11097430-11097449 Msa0717320:intron 20.0%
!! AATTTACCAAAGTTATAAGA+AGG + chr5_1:11097499-11097518 Msa0717320:intron 20.0%
!! ACAATAAAATACTCATTACT+AGG - chr5_1:11097889-11097908 None:intergenic 20.0%
!!! CAATCAAAAACTACATTTTA+AGG - chr5_1:11097975-11097994 None:intergenic 20.0%
!! CATTACCATTCATTATTATT+AGG - chr5_1:11098077-11098096 None:intergenic 20.0%
!!! AATAATAATGAATGGTAATG+TGG + chr5_1:11098077-11098096 Msa0717320:intron 20.0%
!! AATTATGATTCATCAACAAA+CGG - chr5_1:11098114-11098133 None:intergenic 20.0%
!! AAAAAAAAAAACAAGAGTCT+TGG - chr5_1:11098243-11098262 None:intergenic 20.0%
!! CACTCACTATATTAATAAAT+TGG - chr5_1:11098397-11098416 None:intergenic 20.0%
!!! TTTTCCCTAACAAAATATTA+GGG + chr5_1:11098894-11098913 Msa0717320:intron 20.0%
!!! AAAACCCTAATATTTTGTTA+GGG - chr5_1:11098901-11098920 None:intergenic 20.0%
!! AATTGCATTTCAACTATATA+TGG - chr5_1:11098943-11098962 None:intergenic 20.0%
!!! TTGGATACTTTTTATCTTTA+TGG - chr5_1:11099107-11099126 None:intergenic 20.0%
!! TATGATAAGATGAAACTAAT+TGG + chr5_1:11099195-11099214 Msa0717320:CDS 20.0%
!! ATGATAAGATGAAACTAATT+GGG + chr5_1:11099196-11099215 Msa0717320:CDS 20.0%
!! AGAAGGATATAAGTATTATA+TGG - chr5_1:11099342-11099361 None:intergenic 20.0%
!! ATAATTAGTAGTTACATACA+TGG - chr5_1:11099553-11099572 None:intergenic 20.0%
!! GACAATACATAATATATGTA+AGG + chr5_1:11099655-11099674 Msa0717320:intron 20.0%
!! TATAATCTAAATGTTCAACA+AGG + chr5_1:11099899-11099918 Msa0717320:intron 20.0%
!! AAAATTATGCAAAAGCAAAA+GGG + chr5_1:11100118-11100137 Msa0717320:intron 20.0%
!!! TTCTTTTGTTGATATGTATT+AGG - chr5_1:11100245-11100264 None:intergenic 20.0%
!! TTAATTGTATGTGTTAATGA+CGG - chr5_1:11100282-11100301 None:intergenic 20.0%
!!! ATAAAAGTTTAGGTCTTTTT+GGG - chr5_1:11100385-11100404 None:intergenic 20.0%
!!! AATAAAAGTTTAGGTCTTTT+TGG - chr5_1:11100386-11100405 None:intergenic 20.0%
!! TCTAATGTCAATAAAATGAT+CGG - chr5_1:11100720-11100739 None:intergenic 20.0%
!!! ATCATTTTATTGACATTAGA+CGG + chr5_1:11100720-11100739 Msa0717320:intron 20.0%
!! TTAATTAAGTATGAAACTTG+AGG - chr5_1:11100809-11100828 None:intergenic 20.0%
!!! TTAAACTATATGTTTTGTAC+AGG + chr5_1:11100825-11100844 Msa0717320:intron 20.0%
!! TAGTACTAGTACAAATAAAA+TGG - chr5_1:11101493-11101512 None:intergenic 20.0%
! GAAGAACATATATATGTTGA+TGG - chr5_1:11097257-11097276 None:intergenic 25.0%
! AATTACTACAATTCTGTGTT+GGG - chr5_1:11097338-11097357 None:intergenic 25.0%
! AAATTACTACAATTCTGTGT+TGG - chr5_1:11097339-11097358 None:intergenic 25.0%
!!! GTTTGTTTCTTACTTGTTAT+AGG - chr5_1:11097362-11097381 None:intergenic 25.0%
! TAGTTTACAAAAGACTTGTA+TGG - chr5_1:11097384-11097403 None:intergenic 25.0%
! ACATACAGATATGAAAAATG+TGG - chr5_1:11097463-11097482 None:intergenic 25.0%
!!! TGTTTTTGCTACTACTTTTA+TGG - chr5_1:11097575-11097594 None:intergenic 25.0%
! ATTTATCTCAAAATCCGTTA+AGG + chr5_1:11097594-11097613 Msa0717320:intron 25.0%
!! TTTTATTGGATGAAAAGCAA+AGG - chr5_1:11097774-11097793 None:intergenic 25.0%
! ATTACTAGGTTAATAAGGAT+GGG - chr5_1:11097875-11097894 None:intergenic 25.0%
! TACTCATTACTAGGTTAATA+AGG - chr5_1:11097880-11097899 None:intergenic 25.0%
!! GTTTTATACTTGTCATTAAC+TGG + chr5_1:11097994-11098013 Msa0717320:intron 25.0%
! TAAGGCCTAATAATAATGAA+TGG + chr5_1:11098069-11098088 Msa0717320:intron 25.0%
! ATTATGATTCATCAACAAAC+GGG - chr5_1:11098113-11098132 None:intergenic 25.0%
! AAATGATTATGATGAGAGTT+TGG - chr5_1:11098280-11098299 None:intergenic 25.0%
! TGTTATCAGAGATAATCATA+AGG - chr5_1:11098438-11098457 None:intergenic 25.0%
! TGTTTGAATTATAACCAAAC+AGG - chr5_1:11098587-11098606 None:intergenic 25.0%
!! ATATTTTGTTAGGGAAAAGA+GGG - chr5_1:11098892-11098911 None:intergenic 25.0%
!! AATATTTTGTTAGGGAAAAG+AGG - chr5_1:11098893-11098912 None:intergenic 25.0%
!! CTTTTCCCTAACAAAATATT+AGG + chr5_1:11098893-11098912 Msa0717320:intron 25.0%
!! CAAAACCCTAATATTTTGTT+AGG - chr5_1:11098902-11098921 None:intergenic 25.0%
! AAATGAATACAGATCAATCA+TGG - chr5_1:11098987-11099006 None:intergenic 25.0%
!!! AAAGATAAAAAGTATCCAAC+AGG + chr5_1:11099108-11099127 Msa0717320:CDS 25.0%
!!! AAGATAAAAAGTATCCAACA+GGG + chr5_1:11099109-11099128 Msa0717320:CDS 25.0%
!! ATGATAATGTTAGGAATAGA+AGG - chr5_1:11099359-11099378 None:intergenic 25.0%
! ACTTATCTATGAAATGTCAA+AGG + chr5_1:11099445-11099464 Msa0717320:intron 25.0%
! TTTGATCTTATAATCTCAAG+CGG + chr5_1:11099486-11099505 Msa0717320:intron 25.0%
!!! GTGAACTACTCTTTTTTTTA+TGG - chr5_1:11099699-11099718 None:intergenic 25.0%
! TTTATGTAGTTATTACTGTC+TGG + chr5_1:11099778-11099797 Msa0717320:intron 25.0%
! GTTGAACATTTAGATTATAG+TGG - chr5_1:11099898-11099917 None:intergenic 25.0%
!!! GTTTACATTTTGATTGTCAA+AGG + chr5_1:11100027-11100046 Msa0717320:intron 25.0%
! GAAAATTATGCAAAAGCAAA+AGG + chr5_1:11100117-11100136 Msa0717320:intron 25.0%
!! CATAATTTTATACATCGTTC+TGG + chr5_1:11100544-11100563 Msa0717320:intron 25.0%
! AATCTCAACCAATAAAAAGA+TGG + chr5_1:11100603-11100622 Msa0717320:intron 25.0%
!!! CAATAGTACTTTTTGTACTT+TGG - chr5_1:11100900-11100919 None:intergenic 25.0%
!!! AGTACAAAAAGTACTATTGA+AGG + chr5_1:11100901-11100920 Msa0717320:CDS 25.0%
!!! AAAAAGTACTATTGAAGGAT+GGG + chr5_1:11100906-11100925 Msa0717320:CDS 25.0%
! CTTACACATGTTATAACTTT+GGG - chr5_1:11101031-11101050 None:intergenic 25.0%
!! ATAATAATAGCAACCTGTTT+TGG - chr5_1:11101188-11101207 None:intergenic 25.0%
AGAAGTAGACAAAATGATCA+AGG - chr5_1:11097153-11097172 None:intergenic 30.0%
CTCTAGTAATATTTCTCATC+AGG + chr5_1:11097179-11097198 Msa0717320:five_prime_UTR 30.0%
! AAAGAGAGGAAACGTTTTAT+TGG - chr5_1:11097788-11097807 None:intergenic 30.0%
TGACGTAATCATAGTAAAAC+GGG - chr5_1:11097850-11097869 None:intergenic 30.0%
GTGACGTAATCATAGTAAAA+CGG - chr5_1:11097851-11097870 None:intergenic 30.0%
CATTACTAGGTTAATAAGGA+TGG - chr5_1:11097876-11097895 None:intergenic 30.0%
! TAATGAATGGTAATGTGGAA+TGG + chr5_1:11098082-11098101 Msa0717320:intron 30.0%
! AATGAATGGTAATGTGGAAT+GGG + chr5_1:11098083-11098102 Msa0717320:intron 30.0%
TTATGATTCATCAACAAACG+GGG - chr5_1:11098112-11098131 None:intergenic 30.0%
ATAAGAAACGGACATGTATA+GGG - chr5_1:11098179-11098198 None:intergenic 30.0%
TATAAGAAACGGACATGTAT+AGG - chr5_1:11098180-11098199 None:intergenic 30.0%
! AAGCAAGGGTATATAAGAAA+CGG - chr5_1:11098191-11098210 None:intergenic 30.0%
!!! ATGAGAGTTTGGTTTTGATA+AGG - chr5_1:11098269-11098288 None:intergenic 30.0%
ATAATCATAAGGTCATTTGG+TGG - chr5_1:11098427-11098446 None:intergenic 30.0%
GAGATAATCATAAGGTCATT+TGG - chr5_1:11098430-11098449 None:intergenic 30.0%
ACTCCATGATAGAAAATTAC+TGG - chr5_1:11098679-11098698 None:intergenic 30.0%
ATCTTTATCGTATTGAACCA+TGG + chr5_1:11098822-11098841 Msa0717320:CDS 30.0%
TCTTTATCGTATTGAACCAT+GGG + chr5_1:11098823-11098842 Msa0717320:CDS 30.0%
! TATTTTGTTAGGGAAAAGAG+GGG - chr5_1:11098891-11098910 None:intergenic 30.0%
!!! AAGACTCTAGTTTTCTACAA+AGG + chr5_1:11099225-11099244 Msa0717320:CDS 30.0%
AATCAGATTTCTGTCCATTA+GGG - chr5_1:11099257-11099276 None:intergenic 30.0%
ATTGGATCATGCATGAATAT+AGG + chr5_1:11099274-11099293 Msa0717320:CDS 30.0%
!!! ACTACTCTTTTTTTTATGGC+CGG - chr5_1:11099695-11099714 None:intergenic 30.0%
CATTTAGATTATAGTGGTCT+AGG - chr5_1:11099892-11099911 None:intergenic 30.0%
! CAAAAGTGTGTAAGCATAAA+AGG - chr5_1:11100008-11100027 None:intergenic 30.0%
! TGCATAATTTTCCATCAGTT+TGG - chr5_1:11100109-11100128 None:intergenic 30.0%
! GTTGCTTTATATTGCAAAAG+AGG - chr5_1:11100201-11100220 None:intergenic 30.0%
!! ATGCACTGATTGTATGTTTA+TGG - chr5_1:11100691-11100710 None:intergenic 30.0%
! ATATGTTTTGTACAGGAAGA+AGG + chr5_1:11100832-11100851 Msa0717320:intron 30.0%
!! CAAAAAGTACTATTGAAGGA+TGG + chr5_1:11100905-11100924 Msa0717320:CDS 30.0%
! CTTGAGATTAGTTGATCAAT+TGG - chr5_1:11100988-11101007 None:intergenic 30.0%
CAATTGATCAACTAATCTCA+AGG + chr5_1:11100986-11101005 Msa0717320:CDS 30.0%
GCTTACACATGTTATAACTT+TGG - chr5_1:11101032-11101051 None:intergenic 30.0%
CTACAAATACAGTTACTGAT+TGG + chr5_1:11101229-11101248 Msa0717320:CDS 30.0%
AACAAATAATAACCCTAGCT+CGG + chr5_1:11101332-11101351 Msa0717320:CDS 30.0%
TCTGAACTTGCATTCAAAAA+TGG - chr5_1:11101414-11101433 None:intergenic 30.0%
CTGCAAAATTTCCTTAACCT+AGG + chr5_1:11097276-11097295 Msa0717320:intron 35.0%
CTGTGTTGGGTGAATTAATT+GGG - chr5_1:11097325-11097344 None:intergenic 35.0%
TCTGTGTTGGGTGAATTAAT+TGG - chr5_1:11097326-11097345 None:intergenic 35.0%
CAGTCTCTGAACATAGTATT+AGG + chr5_1:11097533-11097552 Msa0717320:intron 35.0%
! AACTGACTCATTCTCCTTAA+CGG - chr5_1:11097611-11097630 None:intergenic 35.0%
GAGATGTGACATGAAAATTC+TGG + chr5_1:11097631-11097650 Msa0717320:intron 35.0%
TTCTTCTCATTGCAGAAACT+GGG - chr5_1:11097686-11097705 None:intergenic 35.0%
AGATGAAGACATTACAGTCT+TGG - chr5_1:11097709-11097728 None:intergenic 35.0%
GAAAGGATGAGAAAAAGTAG+AGG - chr5_1:11097748-11097767 None:intergenic 35.0%
ATGAAAAGCAAAGGAAGGAA+AGG - chr5_1:11097765-11097784 None:intergenic 35.0%
ATTGGATGAAAAGCAAAGGA+AGG - chr5_1:11097770-11097789 None:intergenic 35.0%
GGAAAGAGAGAAAAAGTGAA+GGG - chr5_1:11097815-11097834 None:intergenic 35.0%
TGGAAAGAGAGAAAAAGTGA+AGG - chr5_1:11097816-11097835 None:intergenic 35.0%
ATGCTTAGGTTTCTGACTTA+AGG - chr5_1:11097912-11097931 None:intergenic 35.0%
AAACAAGAGAATGCATGCTT+AGG - chr5_1:11097926-11097945 None:intergenic 35.0%
! ATGAATGGTAATGTGGAATG+GGG + chr5_1:11098084-11098103 Msa0717320:intron 35.0%
TGTTGTCTTGTGTTAGTGAA+TGG - chr5_1:11098144-11098163 None:intergenic 35.0%
AAAACAAGAGTCTTGGCATA+GGG - chr5_1:11098236-11098255 None:intergenic 35.0%
AAAAACAAGAGTCTTGGCAT+AGG - chr5_1:11098237-11098256 None:intergenic 35.0%
AAAGTCATCAAAAGTGAGTG+TGG + chr5_1:11098615-11098634 Msa0717320:intron 35.0%
! GCACCAGTAATTTTCTATCA+TGG + chr5_1:11098673-11098692 Msa0717320:intron 35.0%
! ATTTTCTATCATGGAGTCCA+TGG + chr5_1:11098682-11098701 Msa0717320:exon 35.0%
CAACAAGTTCTTCATCAGTT+GGG - chr5_1:11098739-11098758 None:intergenic 35.0%
! ATTTTGTTAGGGAAAAGAGG+GGG - chr5_1:11098890-11098909 None:intergenic 35.0%
AGATGAAACTAATTGGGATG+AGG + chr5_1:11099202-11099221 Msa0717320:CDS 35.0%
ATCAGATTTCTGTCCATTAG+GGG - chr5_1:11099256-11099275 None:intergenic 35.0%
CAATCAGATTTCTGTCCATT+AGG - chr5_1:11099258-11099277 None:intergenic 35.0%
! CTAATGGACAGAAATCTGAT+TGG + chr5_1:11099256-11099275 Msa0717320:CDS 35.0%
AGGCTTGAATCTGATGAAAA+TGG + chr5_1:11099294-11099313 Msa0717320:CDS 35.0%
! TATGGTTGATTAGTTACCTG+TGG - chr5_1:11099324-11099343 None:intergenic 35.0%
AGATCAAACTCTTACCATTC+AGG - chr5_1:11099474-11099493 None:intergenic 35.0%
!!! CTACTCTTTTTTTTATGGCC+GGG - chr5_1:11099694-11099713 None:intergenic 35.0%
GTGTGTAAGCATAAAAGGAA+GGG - chr5_1:11100003-11100022 None:intergenic 35.0%
AGTGTGTAAGCATAAAAGGA+AGG - chr5_1:11100004-11100023 None:intergenic 35.0%
GCCTCATAGTTACAGATAAA+CGG + chr5_1:11100354-11100373 Msa0717320:intron 35.0%
CCTCATAGTTACAGATAAAC+GGG + chr5_1:11100355-11100374 Msa0717320:intron 35.0%
! CAGTCGAAACATAGGTATTT+TGG + chr5_1:11100435-11100454 Msa0717320:intron 35.0%
ACCAATAAAAAGATGGTGTG+TGG + chr5_1:11100610-11100629 Msa0717320:intron 35.0%
! TCCACACACCATCTTTTTAT+TGG - chr5_1:11100614-11100633 None:intergenic 35.0%
ACATACAATCAGTGCATTTG+AGG + chr5_1:11100694-11100713 Msa0717320:intron 35.0%
GTATGAAACTTGAGGAAAGA+TGG - chr5_1:11100801-11100820 None:intergenic 35.0%
! TTTTGTACAGGAAGAAGGAT+GGG + chr5_1:11100837-11100856 Msa0717320:intron 35.0%
TTGATCAATTGGATCCACAA+TGG - chr5_1:11100977-11100996 None:intergenic 35.0%
!! CTTTGGGATAAATAGCTTTG+AGG - chr5_1:11101015-11101034 None:intergenic 35.0%
CTCTTTACTAATGGCAATGA+AGG - chr5_1:11101114-11101133 None:intergenic 35.0%
CTTCATTGCCATTAGTAAAG+AGG + chr5_1:11101112-11101131 Msa0717320:CDS 35.0%
AAGCACAATGTCTCTAGTAT+CGG + chr5_1:11101137-11101156 Msa0717320:CDS 35.0%
ATGACATTAACGACCAAAAC+AGG + chr5_1:11101172-11101191 Msa0717320:CDS 35.0%
! GAGAGCTTTTGATAAGTTTG+TGG + chr5_1:11101251-11101270 Msa0717320:CDS 35.0%
CATGAAGTTGAAACTGATCA+AGG + chr5_1:11101288-11101307 Msa0717320:CDS 35.0%
AGTTCAGATTGCAGTGATAT+TGG + chr5_1:11101426-11101445 Msa0717320:CDS 35.0%
GTTCAGATTGCAGTGATATT+GGG + chr5_1:11101427-11101446 Msa0717320:CDS 35.0%
CTCAATTTGCACTCATTCAA+GGG - chr5_1:11101629-11101648 None:intergenic 35.0%
TCTCAATTTGCACTCATTCA+AGG - chr5_1:11101630-11101649 None:intergenic 35.0%
!! GGTTTGAGTTGAAGAAGAGA+GGG - chr5_1:11097125-11097144 None:intergenic 40.0%
GACAAAATGATCAAGGAGCT+CGG - chr5_1:11097146-11097165 None:intergenic 40.0%
AAACATGCATGCATGAACCT+AGG - chr5_1:11097296-11097315 None:intergenic 40.0%
GTGCAGCCTTCTTATAACTT+TGG - chr5_1:11097508-11097527 None:intergenic 40.0%
GTTCTTCTCATTGCAGAAAC+TGG - chr5_1:11097687-11097706 None:intergenic 40.0%
AAGTGAAGGGACAAAAAGAG+AGG - chr5_1:11097802-11097821 None:intergenic 40.0%
TTGTGTTAGTGAATGGTGGT+GGG - chr5_1:11098137-11098156 None:intergenic 40.0%
TGTCTTGTGTTAGTGAATGG+TGG - chr5_1:11098141-11098160 None:intergenic 40.0%
GAGTTTGATGAAGCAAGCAA+GGG - chr5_1:11098205-11098224 None:intergenic 40.0%
TGAGTTTGATGAAGCAAGCA+AGG - chr5_1:11098206-11098225 None:intergenic 40.0%
CACATACATCACATCCTGTT+TGG + chr5_1:11098570-11098589 Msa0717320:intron 40.0%
CCAACAAGTTCTTCATCAGT+TGG - chr5_1:11098740-11098759 None:intergenic 40.0%
CCAACTGATGAAGAACTTGT+TGG + chr5_1:11098737-11098756 Msa0717320:CDS 40.0%
CGATCTCTCTGATAACATCA+AGG - chr5_1:11098802-11098821 None:intergenic 40.0%
ATTGAACCATGGGATCTTCA+AGG + chr5_1:11098833-11098852 Msa0717320:CDS 40.0%
TGTATACCTTGAAGATCCCA+TGG - chr5_1:11098842-11098861 None:intergenic 40.0%
AAGAACTAACAGAGCTACCA+TGG + chr5_1:11099134-11099153 Msa0717320:CDS 40.0%
AATGTCAAAGGTCACCTGAA+TGG + chr5_1:11099457-11099476 Msa0717320:intron 40.0%
GATCTTATAATCTCAAGCGG+CGG + chr5_1:11099489-11099508 Msa0717320:intron 40.0%
TCAACTGAGCTAAACTAACG+AGG - chr5_1:11099631-11099650 None:intergenic 40.0%
TAAGGTCAGAGTTCAAATCC+CGG + chr5_1:11099673-11099692 Msa0717320:intron 40.0%
!! TTTTCCATCAGTTTGGTGAG+AGG - chr5_1:11100102-11100121 None:intergenic 40.0%
CCCGTTTATCTGTAACTATG+AGG - chr5_1:11100358-11100377 None:intergenic 40.0%
CAACTTTGCAGTCGAAACAT+AGG + chr5_1:11100427-11100446 Msa0717320:intron 40.0%
ATTCTCTATGACCGTACGTA+GGG - chr5_1:11100667-11100686 None:intergenic 40.0%
AATTCTCTATGACCGTACGT+AGG - chr5_1:11100668-11100687 None:intergenic 40.0%
! GTTTTGTACAGGAAGAAGGA+TGG + chr5_1:11100836-11100855 Msa0717320:intron 40.0%
TCTATGAAGAAGCTGCAAGT+AGG + chr5_1:11100941-11100960 Msa0717320:CDS 40.0%
CTATGAAGAAGCTGCAAGTA+GGG + chr5_1:11100942-11100961 Msa0717320:CDS 40.0%
TAGGGTCAACAATTCCATTG+TGG + chr5_1:11100960-11100979 Msa0717320:CDS 40.0%
AATGAAGGACTTTCAAGCTG+AGG - chr5_1:11101099-11101118 None:intergenic 40.0%
GATACTAGAGACATTGTGCT+TGG - chr5_1:11101138-11101157 None:intergenic 40.0%
!!! GGAGTGTTGTTGTCAAGTTT+TGG + chr5_1:11101309-11101328 Msa0717320:CDS 40.0%
TTGAGATGCATGCGTCAAAA+TGG + chr5_1:11101644-11101663 Msa0717320:three_prime_UTR 40.0%
!! CGGTTTGAGTTGAAGAAGAG+AGG - chr5_1:11097126-11097145 None:intergenic 45.0%
GCATGCATGAACCTAGGTTA+AGG - chr5_1:11097290-11097309 None:intergenic 45.0%
ACTATGTTCAGAGACTGTGC+AGG - chr5_1:11097530-11097549 None:intergenic 45.0%
CTTGTGTTAGTGAATGGTGG+TGG - chr5_1:11098138-11098157 None:intergenic 45.0%
AAGAGTCTTGGCATAGGGTA+GGG - chr5_1:11098231-11098250 None:intergenic 45.0%
GTCATCAAAAGTGAGTGTGG+TGG + chr5_1:11098618-11098637 Msa0717320:intron 45.0%
ATCAAAAGTGAGTGTGGTGG+TGG + chr5_1:11098621-11098640 Msa0717320:intron 45.0%
TCAAAAGTGAGTGTGGTGGT+GGG + chr5_1:11098622-11098641 Msa0717320:intron 45.0%
!! AGTGTGGTGGTGGGTATTAA+TGG + chr5_1:11098631-11098650 Msa0717320:intron 45.0%
CAAGTTCTTCATCAGTTGGG+TGG - chr5_1:11098736-11098755 None:intergenic 45.0%
ATGAAATGGCAGAGAGATGC+AGG + chr5_1:11099043-11099062 Msa0717320:intron 45.0%
GGTATGAAGAGCAGAATGAG+TGG + chr5_1:11099070-11099089 Msa0717320:CDS 45.0%
! CTGTTAGTTCTTGTCCCTGT+TGG - chr5_1:11099126-11099145 None:intergenic 45.0%
TACAAAGGAAGAGCCCCTAA+TGG + chr5_1:11099240-11099259 Msa0717320:CDS 45.0%
TGATGAAAATGGACCTCCAC+AGG + chr5_1:11099305-11099324 Msa0717320:CDS 45.0%
! GGTTGATTAGTTACCTGTGG+AGG - chr5_1:11099321-11099340 None:intergenic 45.0%
! GTTTGGTGAGAGGTAGTAGT+AGG - chr5_1:11100092-11100111 None:intergenic 45.0%
ACTACCTCTCACCAAACTGA+TGG + chr5_1:11100095-11100114 Msa0717320:intron 45.0%
TGTTTCGACTGCAAAGTTGC+TGG - chr5_1:11100426-11100445 None:intergenic 45.0%
TGACCTAGATTCCCTACGTA+CGG + chr5_1:11100653-11100672 Msa0717320:intron 45.0%
GTGCTTGGCCTCTTTACTAA+TGG - chr5_1:11101123-11101142 None:intergenic 45.0%
TAATAACCCTAGCTCGGACA+TGG + chr5_1:11101338-11101357 Msa0717320:CDS 45.0%
! GCATTGATGTTACTGCAGCA+GGG + chr5_1:11101360-11101379 Msa0717320:CDS 45.0%
TGTTACTGCAGCAGGGTAAT+AGG + chr5_1:11101367-11101386 Msa0717320:CDS 45.0%
GTTACTGCAGCAGGGTAATA+GGG + chr5_1:11101368-11101387 Msa0717320:CDS 45.0%
! TAAAACGGGCACGCGTTTTG+TGG - chr5_1:11097836-11097855 None:intergenic 50.0%
CAAGAGTCTTGGCATAGGGT+AGG - chr5_1:11098232-11098251 None:intergenic 50.0%
!! GTGGTGGTGGGTATTAATGG+TGG + chr5_1:11098634-11098653 Msa0717320:intron 50.0%
!! GTGGTGGGTATTAATGGTGG+TGG + chr5_1:11098637-11098656 Msa0717320:intron 50.0%
ATGGCAGAGAGATGCAGGAT+CGG + chr5_1:11099048-11099067 Msa0717320:intron 50.0%
ACTAACAGAGCTACCATGGC+TGG + chr5_1:11099138-11099157 Msa0717320:CDS 50.0%
CTAACAGAGCTACCATGGCT+GGG + chr5_1:11099139-11099158 Msa0717320:CDS 50.0%
AGCTTTCCAAAACCCAGCCA+TGG - chr5_1:11099154-11099173 None:intergenic 50.0%
!!! GCTGGGTTTTGGAAAGCTAC+AGG + chr5_1:11099156-11099175 Msa0717320:CDS 50.0%
TGACCGTACGTAGGGAATCT+AGG - chr5_1:11100659-11100678 None:intergenic 50.0%
TCAATGCCATGTCCGAGCTA+GGG - chr5_1:11101347-11101366 None:intergenic 50.0%
ATCAATGCCATGTCCGAGCT+AGG - chr5_1:11101348-11101367 None:intergenic 50.0%
!! GGCATTGATGTTACTGCAGC+AGG + chr5_1:11101359-11101378 Msa0717320:CDS 50.0%
TGGTGGGACACATGACTCCA+TGG - chr5_1:11098702-11098721 None:intergenic 55.0%
ATGGAGTCATGTGTCCCACC+AGG + chr5_1:11098701-11098720 Msa0717320:CDS 55.0%
TGGAGTCATGTGTCCCACCA+GGG + chr5_1:11098702-11098721 Msa0717320:CDS 55.0%
CATGTGTCCCACCAGGGTTT+CGG + chr5_1:11098708-11098727 Msa0717320:CDS 55.0%
TGGCAGAGAGATGCAGGATC+GGG + chr5_1:11099049-11099068 Msa0717320:intron 55.0%
! GAGCTACCATGGCTGGGTTT+TGG + chr5_1:11099145-11099164 Msa0717320:CDS 55.0%
GGTGGAACCGAAACCCTGGT+GGG - chr5_1:11098718-11098737 None:intergenic 60.0%
GTTGGGTGGAACCGAAACCC+TGG - chr5_1:11098722-11098741 None:intergenic 60.0%
GGGTGGAACCGAAACCCTGG+TGG - chr5_1:11098719-11098738 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 11097080 11101667 11097080 ID=Msa0717320;Name=Msa0717320
chr5_1 mRNA 11097080 11101667 11097080 ID=Msa0717320-mRNA-1;Parent=Msa0717320;Name=Msa0717320-mRNA-1;_AED=0.07;_eAED=0.07;_QI=139|1|0.75|1|0.66|0.5|4|197|352
chr5_1 exon 11097080 11097200 11097080 ID=Msa0717320-mRNA-1:exon:4551;Parent=Msa0717320-mRNA-1
chr5_1 exon 11098674 11098854 11098674 ID=Msa0717320-mRNA-1:exon:4552;Parent=Msa0717320-mRNA-1
chr5_1 exon 11099055 11099326 11099055 ID=Msa0717320-mRNA-1:exon:4553;Parent=Msa0717320-mRNA-1
chr5_1 exon 11100847 11101667 11100847 ID=Msa0717320-mRNA-1:exon:4554;Parent=Msa0717320-mRNA-1
chr5_1 five_prime_UTR 11097080 11097200 11097080 ID=Msa0717320-mRNA-1:five_prime_utr;Parent=Msa0717320-mRNA-1
chr5_1 five_prime_UTR 11098674 11098691 11098674 ID=Msa0717320-mRNA-1:five_prime_utr;Parent=Msa0717320-mRNA-1
chr5_1 CDS 11098692 11098854 11098692 ID=Msa0717320-mRNA-1:cds;Parent=Msa0717320-mRNA-1
chr5_1 CDS 11099055 11099326 11099055 ID=Msa0717320-mRNA-1:cds;Parent=Msa0717320-mRNA-1
chr5_1 CDS 11100847 11101470 11100847 ID=Msa0717320-mRNA-1:cds;Parent=Msa0717320-mRNA-1
chr5_1 three_prime_UTR 11101471 11101667 11101471 ID=Msa0717320-mRNA-1:three_prime_utr;Parent=Msa0717320-mRNA-1
Gene Sequence

>Msa0717320

ATGGAGTCCATGGAGTCATGTGTCCCACCAGGGTTTCGGTTCCACCCAACTGATGAAGAACTTGTTGGCTATTATCTCAGAAAGAAAATTGCTTCTCAGAAAATTGACCTTGATGTTATCAGAGAGATCGATCTTTATCGTATTGAACCATGGGATCTTCAAGAGAGATGCAGGATCGGGTATGAAGAGCAGAATGAGTGGTATTTTTTCAGCCATAAAGATAAAAAGTATCCAACAGGGACAAGAACTAACAGAGCTACCATGGCTGGGTTTTGGAAAGCTACAGGAAGAGATAAAGCAGTTTATGATAAGATGAAACTAATTGGGATGAGGAAGACTCTAGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAATCTGATTGGATCATGCATGAATATAGGCTTGAATCTGATGAAAATGGACCTCCACAGGAAGAAGGATGGGTAGTGTGTAGAGCATTTAAGAAAAGAACAACAAACAGCCAAAGTACAAAAAGTACTATTGAAGGATGGGACACAAGCTACTTCTATGAAGAAGCTGCAAGTAGGGTCAACAATTCCATTGTGGATCCAATTGATCAACTAATCTCAAGGCAACCTCAAAGCTATTTATCCCAAAGTTATAACATGTGTAAGCAAGAGATAGAAGCATGCATGCATGCAGAACAATTTTTGCAGCTTCCTCAGCTTGAAAGTCCTTCATTGCCATTAGTAAAGAGGCCAAGCACAATGTCTCTAGTATCGGACAATAATAACGATGACATTAACGACCAAAACAGGTTGCTATTATTATCGAACAACAACGATAATATTACTACAAATACAGTTACTGATTGGAGAGCTTTTGATAAGTTTGTGGCTTCTCAACTGAGTCATGAAGTTGAAACTGATCAAGGAGTGTTGTTGTCAAGTTTTGGAACAAATAATAACCCTAGCTCGGACATGGCATTGATGTTACTGCAGCAGGGTAATAGGGATGAAGAGAACAAGTTAAGTCCATTTTTGAATGCAAGTTCAGATTGCAGTGATATTGGGATATGCGTATTTGAAAAATGA
Protein sequence

>Msa0717320

MESMESCVPPGFRFHPTDEELVGYYLRKKIASQKIDLDVIREIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKMKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKRTTNSQSTKSTIEGWDTSYFYEEAASRVNNSIVDPIDQLISRQPQSYLSQSYNMCKQEIEACMHAEQFLQLPQLESPSLPLVKRPSTMSLVSDNNNDDINDQNRLLLLSNNNDNITTNTVTDWRAFDKFVASQLSHEVETDQGVLLSSFGTNNNPSSDMALMLLQQGNRDEENKLSPFLNASSDCSDIGICVFEK*