AlfalfaGEDB | Msa0717660

M. sativa cultivar zhongmu-4 / Msa0717660

KEGG: -
GO: GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0717660	XP_003612158.1	95.752	306	9	3	1	306	1	302	0.0	602

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0717660	sp\|Q8LL11\|WUS_PETHY	48.797	291	99	12	27	297	42	302	9.28e-69	219

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0717660	B7UCW4	95.752	306	9	3	1	306	1	302	0.0	602

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TFs/TRs:

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Gene ID	Type	Classification
Msa0717660	TF	HB-WOX

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0717660	MtrunA17_Chr5g0405351	95.752	306	9	3	1	306	1	302	0.0	602
Msa0717660	MtrunA17_Chr4g0043891	67.164	67	21	1	28	94	4	69	2.07e-25	102
Msa0717660	MtrunA17_Chr8g0392991	64.000	75	26	1	20	94	84	157	2.29e-25	103
Msa0717660	MtrunA17_Chr5g0436661	59.459	74	26	2	32	102	33	105	2.48e-24	97.4
Msa0717660	MtrunA17_Chr7g0238431	67.692	65	20	1	30	94	6	69	7.25e-24	96.7
Msa0717660	MtrunA17_Chr4g0031341	68.254	63	19	1	32	94	25	86	2.21e-23	96.7
Msa0717660	MtrunA17_Chr1g0153171	55.844	77	33	1	18	94	76	151	3.87e-22	92.8
Msa0717660	MtrunA17_Chr8g0385441	78.723	47	10	0	48	94	97	143	3.64e-19	82.8
Msa0717660	MtrunA17_Chr3g0125111	76.596	47	11	0	48	94	95	141	5.79e-19	82.4
Msa0717660	MtrunA17_Chr7g0223471	48.438	64	32	1	32	95	47	109	9.85e-15	73.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0717660	AT2G17950.1	41.699	259	103	9	27	259	33	269	2.03e-47	161
Msa0717660	AT5G59340.1	63.514	74	26	1	21	94	3	75	2.08e-25	102
Msa0717660	AT3G18010.1	70.769	65	18	1	30	94	74	137	2.39e-25	104
Msa0717660	AT3G11260.1	60.000	75	27	2	20	94	14	85	1.01e-23	95.9
Msa0717660	AT2G28610.1	65.152	66	22	1	29	94	5	69	4.16e-23	95.9
Msa0717660	AT5G05770.1	62.319	69	25	1	32	100	29	96	6.63e-23	92.0
Msa0717660	AT1G46480.2	48.913	92	44	2	3	94	63	151	1.62e-22	92.8
Msa0717660	AT1G46480.1	48.913	92	44	2	3	94	63	151	8.00e-22	92.8
Msa0717660	AT2G01500.1	61.017	59	22	1	29	87	58	115	9.55e-19	84.7
Msa0717660	AT5G45980.1	52.381	63	29	1	32	94	55	116	1.03e-14	73.9

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Find 66 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGAGGGTTTCAATTTC+AGG	0.186091	5_1:+11524059	None:intergenic
AAATCAAATTCATCTAACTA+TGG	0.374371	5_1:-11523990	Msa0717660:CDS
AACAACATTCACCAAACAAT+GGG	0.452239	5_1:-11525331	Msa0717660:CDS
AACCCTCACTTAGGATGGAT+TGG	0.497436	5_1:-11524191	Msa0717660:CDS
AAGACCAAATGAAGAAATCA+TGG	0.463541	5_1:-11524114	Msa0717660:CDS
AAGGATCTTTACTACAACAA+TGG	0.504008	5_1:-11525245	Msa0717660:CDS
AATATGGATCAACATGATGA+TGG	0.557603	5_1:+11524168	None:intergenic
AATTACAACATTTCATCTGC+TGG	0.424173	5_1:-11524957	Msa0717660:intron
ACCTACAACCGTAAGAGTTG+AGG	0.617544	5_1:+11523901	None:intergenic
AGACAGTATGGTAAGATTGA+AGG	0.507784	5_1:-11525173	Msa0717660:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAACATTCACCAAACAAT+GGG	-	chr5_1:11523924-11523943	Msa0717660:CDS	30.0%
ATTCTTATCTGATCTGTTGT+TGG	+	chr5_1:11523986-11524005	None:intergenic	30.0%
AAGGATCTTTACTACAACAA+TGG	-	chr5_1:11524010-11524029	Msa0717660:CDS	30.0%
AATTACAACATTTCATCTGC+TGG	-	chr5_1:11524298-11524317	Msa0717660:intron	30.0%
TTTGTGTGTGTGTTTATGTA+GGG	-	chr5_1:11524403-11524422	Msa0717660:intron	30.0%
TGAGGTTGTTCTTCTTATTA+TGG	+	chr5_1:11524749-11524768	None:intergenic	30.0%
AATATGGATCAACATGATGA+TGG	+	chr5_1:11525090-11525109	None:intergenic	30.0%
TTTGCATAAGCTGAAGAATA+TGG	+	chr5_1:11525106-11525125	None:intergenic	30.0%
AAGACCAAATGAAGAAATCA+TGG	-	chr5_1:11525141-11525160	Msa0717660:CDS	30.0%
TCTTCCATGATTTCTTCATT+TGG	+	chr5_1:11525148-11525167	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	11523881	11525396	11523881	ID=Msa0717660;Name=Msa0717660
chr5_1	mRNA	11523881	11525396	11523881	ID=Msa0717660-mRNA-1;Parent=Msa0717660;Name=Msa0717660-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|3\|0\|306
chr5_1	exon	11524958	11525396	11524958	ID=Msa0717660-mRNA-1:exon:4703;Parent=Msa0717660-mRNA-1
chr5_1	exon	11524756	11524853	11524756	ID=Msa0717660-mRNA-1:exon:4702;Parent=Msa0717660-mRNA-1
chr5_1	exon	11523881	11524264	11523881	ID=Msa0717660-mRNA-1:exon:4701;Parent=Msa0717660-mRNA-1
chr5_1	CDS	11524958	11525396	11524958	ID=Msa0717660-mRNA-1:cds;Parent=Msa0717660-mRNA-1
chr5_1	CDS	11524756	11524853	11524756	ID=Msa0717660-mRNA-1:cds;Parent=Msa0717660-mRNA-1
chr5_1	CDS	11523881	11524264	11523881	ID=Msa0717660-mRNA-1:cds;Parent=Msa0717660-mRNA-1

Gene Sequence

>Msa0717660

ATGGAACAACCTCAACAACAACAACCACAACAGCAGCAGACACAACAACATTCACCAAACAATGGGATTATGGGCAGCAGACAAAGTAGTACAAGGTGGACACCAACAACAGATCAGATAAGAATATTGAAGGATCTTTACTACAACAATGGAATTAGATCACCAAGTGCAGAACAGATTCAGAGAATCTCTGCTAGGTTAAGACAGTATGGTAAGATTGAAGGCAAAAATGTCTTTTATTGGTTTCAAAATCACAAAGCTAGAGAAAGACAGAAGAAAAGGTTCACTTCTGATGTTAATGTTGTTCCCATCATTCAAAGAGCACCAAACAACAATACTGTTATTGCTGCTGCTAATTGGAAACCTGATCAACATGAACAACAACAACAAAACATTAATCTTCACACAAACCATTCTAATTACAACATTTCATCTGCTGGGCTTTCTTCTGCTTCATGTTCTTCTGCTGAGATGGTTACTGTAGGCCAGATTGGTAACTATGGATATGGATCTGTCCCAATGGAAAAGAGTTTTAGGGAGTGCACAATATCAGCTGGATGTAGCAGTAGTCAAGTTGGAAGTACCATAAACCCTCACTTAGGATGGATTGGCCATCATCATGTTGATCCATATTCTTCAGCTTATGCAAACTTATTTGAAAAAATAAGACCAAATGAAGAAATCATGGAAGAATATGAACAAGGACAAGAAAATGGTTCACCTGAAATTGAAACCCTCCCTTTATTCCCTATGCATGCTGAAGACATTCATGGTGGCTATTGTAACCTCAAATCAAATTCATCTAACTATGGTGGTTGGTATCAAGCTGAAGATGCAGGATTCATGTATGGTTCTCGTACTACTTCCTTGGAACTTAGCCTCAACTCTTACGGTTGTAGGTCACCAGATTATGCTAATTAA

Protein sequence

>Msa0717660

MEQPQQQQPQQQQTQQHSPNNGIMGSRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDVNVVPIIQRAPNNNTVIAAANWKPDQHEQQQQNINLHTNHSNYNISSAGLSSASCSSAEMVTVGQIGNYGYGSVPMEKSFRECTISAGCSSSQVGSTINPHLGWIGHHHVDPYSSAYANLFEKIRPNEEIMEEYEQGQENGSPEIETLPLFPMHAEDIHGGYCNLKSNSSNYGGWYQAEDAGFMYGSRTTSLELSLNSYGCRSPDYAN*