Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717660 | XP_003612158.1 | 95.752 | 306 | 9 | 3 | 1 | 306 | 1 | 302 | 0.0 | 602 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717660 | sp|Q8LL11|WUS_PETHY | 48.797 | 291 | 99 | 12 | 27 | 297 | 42 | 302 | 9.28e-69 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717660 | B7UCW4 | 95.752 | 306 | 9 | 3 | 1 | 306 | 1 | 302 | 0.0 | 602 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0717660 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717660 | MtrunA17_Chr5g0405351 | 95.752 | 306 | 9 | 3 | 1 | 306 | 1 | 302 | 0.0 | 602 |
| Msa0717660 | MtrunA17_Chr4g0043891 | 67.164 | 67 | 21 | 1 | 28 | 94 | 4 | 69 | 2.07e-25 | 102 |
| Msa0717660 | MtrunA17_Chr8g0392991 | 64.000 | 75 | 26 | 1 | 20 | 94 | 84 | 157 | 2.29e-25 | 103 |
| Msa0717660 | MtrunA17_Chr5g0436661 | 59.459 | 74 | 26 | 2 | 32 | 102 | 33 | 105 | 2.48e-24 | 97.4 |
| Msa0717660 | MtrunA17_Chr7g0238431 | 67.692 | 65 | 20 | 1 | 30 | 94 | 6 | 69 | 7.25e-24 | 96.7 |
| Msa0717660 | MtrunA17_Chr4g0031341 | 68.254 | 63 | 19 | 1 | 32 | 94 | 25 | 86 | 2.21e-23 | 96.7 |
| Msa0717660 | MtrunA17_Chr1g0153171 | 55.844 | 77 | 33 | 1 | 18 | 94 | 76 | 151 | 3.87e-22 | 92.8 |
| Msa0717660 | MtrunA17_Chr8g0385441 | 78.723 | 47 | 10 | 0 | 48 | 94 | 97 | 143 | 3.64e-19 | 82.8 |
| Msa0717660 | MtrunA17_Chr3g0125111 | 76.596 | 47 | 11 | 0 | 48 | 94 | 95 | 141 | 5.79e-19 | 82.4 |
| Msa0717660 | MtrunA17_Chr7g0223471 | 48.438 | 64 | 32 | 1 | 32 | 95 | 47 | 109 | 9.85e-15 | 73.9 |
| Msa0717660 | MtrunA17_Chr2g0283141 | 44.928 | 69 | 37 | 1 | 26 | 94 | 49 | 116 | 6.51e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717660 | AT2G17950.1 | 41.699 | 259 | 103 | 9 | 27 | 259 | 33 | 269 | 2.03e-47 | 161 |
| Msa0717660 | AT5G59340.1 | 63.514 | 74 | 26 | 1 | 21 | 94 | 3 | 75 | 2.08e-25 | 102 |
| Msa0717660 | AT3G18010.1 | 70.769 | 65 | 18 | 1 | 30 | 94 | 74 | 137 | 2.39e-25 | 104 |
| Msa0717660 | AT3G11260.1 | 60.000 | 75 | 27 | 2 | 20 | 94 | 14 | 85 | 1.01e-23 | 95.9 |
| Msa0717660 | AT2G28610.1 | 65.152 | 66 | 22 | 1 | 29 | 94 | 5 | 69 | 4.16e-23 | 95.9 |
| Msa0717660 | AT5G05770.1 | 62.319 | 69 | 25 | 1 | 32 | 100 | 29 | 96 | 6.63e-23 | 92.0 |
| Msa0717660 | AT1G46480.2 | 48.913 | 92 | 44 | 2 | 3 | 94 | 63 | 151 | 1.62e-22 | 92.8 |
| Msa0717660 | AT1G46480.1 | 48.913 | 92 | 44 | 2 | 3 | 94 | 63 | 151 | 8.00e-22 | 92.8 |
| Msa0717660 | AT2G01500.1 | 61.017 | 59 | 22 | 1 | 29 | 87 | 58 | 115 | 9.55e-19 | 84.7 |
| Msa0717660 | AT5G45980.1 | 52.381 | 63 | 29 | 1 | 32 | 94 | 55 | 116 | 1.03e-14 | 73.9 |
| Msa0717660 | AT2G33880.1 | 45.714 | 70 | 37 | 1 | 26 | 95 | 49 | 117 | 2.04e-14 | 73.6 |
| Msa0717660 | AT2G33880.2 | 45.714 | 70 | 37 | 1 | 26 | 95 | 49 | 117 | 2.07e-14 | 73.6 |
Find 66 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCCTAAGTGAGGGTTTA+TGG | 0.166513 | 5_1:+11524196 | None:intergenic |
| AAAGGGAGGGTTTCAATTTC+AGG | 0.186091 | 5_1:+11524059 | None:intergenic |
| TTCACCAAACAATGGGATTA+TGG | 0.189862 | 5_1:-11525324 | Msa0717660:CDS |
| CTGTTATTGCTGCTGCTAAT+TGG | 0.280712 | 5_1:-11525037 | Msa0717660:CDS |
| CAAATTTAATTAGCATAATC+TGG | 0.300562 | 5_1:+11523876 | None:intergenic |
| TTTGCATAAGCTGAAGAATA+TGG | 0.309877 | 5_1:+11524152 | None:intergenic |
| TCTTCCATGATTTCTTCATT+TGG | 0.323131 | 5_1:+11524110 | None:intergenic |
| CTCTGAATCTGTTCTGCACT+TGG | 0.338799 | 5_1:+11525212 | None:intergenic |
| TATGAACAAGGACAAGAAAA+TGG | 0.342235 | 5_1:-11524086 | Msa0717660:CDS |
| ATTCTTATCTGATCTGTTGT+TGG | 0.355808 | 5_1:+11525272 | None:intergenic |
| CAGATTGGTAACTATGGATA+TGG | 0.369373 | 5_1:-11524784 | Msa0717660:CDS |
| AAATCAAATTCATCTAACTA+TGG | 0.374371 | 5_1:-11523990 | Msa0717660:CDS |
| TCAGCATGCATAGGGAATAA+AGG | 0.383868 | 5_1:+11524041 | None:intergenic |
| TCACCAAACAATGGGATTAT+GGG | 0.391816 | 5_1:-11525323 | Msa0717660:CDS |
| GCAATAACAGTATTGTTGTT+TGG | 0.399113 | 5_1:+11525050 | None:intergenic |
| GTAGGCCAGATTGGTAACTA+TGG | 0.413013 | 5_1:-11524790 | Msa0717660:CDS |
| TCTGCTAGGTTAAGACAGTA+TGG | 0.419676 | 5_1:-11525185 | Msa0717660:CDS |
| TGTTGTTGTTCATGTTGATC+AGG | 0.421893 | 5_1:+11525011 | None:intergenic |
| GCCTCAACTCTTACGGTTGT+AGG | 0.423475 | 5_1:-11523902 | Msa0717660:CDS |
| AATTACAACATTTCATCTGC+TGG | 0.424173 | 5_1:-11524957 | Msa0717660:intron |
| TGGTTCTCGTACTACTTCCT+TGG | 0.429314 | 5_1:-11523931 | Msa0717660:CDS |
| ATGAAATGTTGTAATTAGAA+TGG | 0.431892 | 5_1:+11524964 | None:intergenic |
| CAGCATGCATAGGGAATAAA+GGG | 0.436158 | 5_1:+11524042 | None:intergenic |
| CTAGAGAAAGACAGAAGAAA+AGG | 0.441919 | 5_1:-11525115 | Msa0717660:CDS |
| GTTTGGTGCTCTTTGAATGA+TGG | 0.443486 | 5_1:+11525067 | None:intergenic |
| CTGCCCATAATCCCATTGTT+TGG | 0.443872 | 5_1:+11525320 | None:intergenic |
| AACAACATTCACCAAACAAT+GGG | 0.452239 | 5_1:-11525331 | Msa0717660:CDS |
| CATATCCATAGTTACCAATC+TGG | 0.452599 | 5_1:+11524785 | None:intergenic |
| TTTGGTGCTCTTTGAATGAT+GGG | 0.453249 | 5_1:+11525068 | None:intergenic |
| GAACTTAGCCTCAACTCTTA+CGG | 0.457853 | 5_1:-11523909 | Msa0717660:CDS |
| AAGACCAAATGAAGAAATCA+TGG | 0.463541 | 5_1:-11524114 | Msa0717660:CDS |
| ATGGTTACTGTAGGCCAGAT+TGG | 0.471455 | 5_1:-11524799 | Msa0717660:CDS |
| AGTTAGATGAATTTGATTTG+AGG | 0.476215 | 5_1:+11523994 | None:intergenic |
| TGTTGTGTCTGCTGCTGTTG+TGG | 0.480611 | 5_1:+11525350 | None:intergenic |
| AGATCAGATAAGAATATTGA+AGG | 0.488670 | 5_1:-11525264 | Msa0717660:CDS |
| TTCATGTTCTTCTGCTGAGA+TGG | 0.491391 | 5_1:-11524818 | Msa0717660:CDS |
| AACCCTCACTTAGGATGGAT+TGG | 0.497436 | 5_1:-11524191 | Msa0717660:CDS |
| AAGGATCTTTACTACAACAA+TGG | 0.504008 | 5_1:-11525245 | Msa0717660:CDS |
| AGACAGTATGGTAAGATTGA+AGG | 0.507784 | 5_1:-11525173 | Msa0717660:CDS |
| GGATGTAGCAGTAGTCAAGT+TGG | 0.507987 | 5_1:-11524224 | Msa0717660:CDS |
| TAGGAGTGCACAATATCAGC+TGG | 0.529304 | 5_1:-11524245 | Msa0717660:CDS |
| ATGCATGCTGAAGACATTCA+TGG | 0.531289 | 5_1:-11524029 | Msa0717660:CDS |
| TGGTATCAAGCTGAAGATGC+AGG | 0.538672 | 5_1:-11523963 | Msa0717660:CDS |
| CCATAAACCCTCACTTAGGA+TGG | 0.538741 | 5_1:-11524196 | Msa0717660:CDS |
| GAAGATGCAGGATTCATGTA+TGG | 0.540471 | 5_1:-11523951 | Msa0717660:CDS |
| TGTTGTGGTTGTTGTTGTTG+AGG | 0.541096 | 5_1:+11525365 | None:intergenic |
| GAATGTCTTCAGCATGCATA+GGG | 0.542541 | 5_1:+11524033 | None:intergenic |
| CAACAACATTCACCAAACAA+TGG | 0.552485 | 5_1:-11525332 | Msa0717660:CDS |
| AATATGGATCAACATGATGA+TGG | 0.557603 | 5_1:+11524168 | None:intergenic |
| AGAGTTGAGGCTAAGTTCCA+AGG | 0.568194 | 5_1:+11523914 | None:intergenic |
| TGAATGTCTTCAGCATGCAT+AGG | 0.569037 | 5_1:+11524032 | None:intergenic |
| TCTGCTGAGATGGTTACTGT+AGG | 0.577564 | 5_1:-11524808 | Msa0717660:CDS |
| ATTCATCTAACTATGGTGGT+TGG | 0.584464 | 5_1:-11523983 | Msa0717660:CDS |
| TCAAATTCATCTAACTATGG+TGG | 0.598577 | 5_1:-11523987 | Msa0717660:CDS |
| AGTACCATAAACCCTCACTT+AGG | 0.599826 | 5_1:-11524200 | Msa0717660:CDS |
| TGGATATGGATCTGTCCCAA+TGG | 0.601538 | 5_1:-11524770 | Msa0717660:CDS |
| AGATTCAGAGAATCTCTGCT+AGG | 0.608727 | 5_1:-11525199 | Msa0717660:CDS |
| ACCTACAACCGTAAGAGTTG+AGG | 0.617544 | 5_1:+11523901 | None:intergenic |
| GGCCAATCCATCCTAAGTGA+GGG | 0.618647 | 5_1:+11524189 | None:intergenic |
| GCAGCAGACAAAGTAGTACA+AGG | 0.645018 | 5_1:-11525301 | Msa0717660:CDS |
| TGGCCAATCCATCCTAAGTG+AGG | 0.646941 | 5_1:+11524188 | None:intergenic |
| CATGCATAGGGAATAAAGGG+AGG | 0.658861 | 5_1:+11524045 | None:intergenic |
| ATGCATAGGGAATAAAGGGA+GGG | 0.659824 | 5_1:+11524046 | None:intergenic |
| ATCATGGAAGAATATGAACA+AGG | 0.690834 | 5_1:-11524098 | Msa0717660:CDS |
| GCAGACAAAGTAGTACAAGG+TGG | 0.749876 | 5_1:-11525298 | Msa0717660:CDS |
| CATGCTGAAGACATTCATGG+TGG | 0.790217 | 5_1:-11524026 | Msa0717660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGATATGAAAATATTAAA+GGG | + | chr5_1:11524571-11524590 | None:intergenic | 10.0% |
| !!! | AATTTAAGTTTTGATTTTTT+TGG | - | chr5_1:11524978-11524997 | Msa0717660:CDS | 10.0% |
| !! | ATAGATATGAAAATATTAAA+GGG | + | chr5_1:11524571-11524590 | None:intergenic | 10.0% |
| !!! | AATTTAAGTTTTGATTTTTT+TGG | - | chr5_1:11524978-11524997 | Msa0717660:CDS | 10.0% |
| !!! | TTTTTTTTCTTGTATCAAAA+AGG | + | chr5_1:11524338-11524357 | None:intergenic | 15.0% |
| !! | CATAGATATGAAAATATTAA+AGG | + | chr5_1:11524572-11524591 | None:intergenic | 15.0% |
| !!! | TCTTTTATTTAATAACCAAA+AGG | - | chr5_1:11524707-11524726 | Msa0717660:intron | 15.0% |
| !!! | TTTTTAATTCTTAGTTTATG+AGG | + | chr5_1:11524767-11524786 | None:intergenic | 15.0% |
| !!! | ATTAAAACTCTACTTTTTTT+AGG | - | chr5_1:11524891-11524910 | Msa0717660:intron | 15.0% |
| !!! | TTTTTTTTCTTGTATCAAAA+AGG | + | chr5_1:11524338-11524357 | None:intergenic | 15.0% |
| !! | CATAGATATGAAAATATTAA+AGG | + | chr5_1:11524572-11524591 | None:intergenic | 15.0% |
| !!! | TCTTTTATTTAATAACCAAA+AGG | - | chr5_1:11524707-11524726 | Msa0717660:intron | 15.0% |
| !!! | TTTTTAATTCTTAGTTTATG+AGG | + | chr5_1:11524767-11524786 | None:intergenic | 15.0% |
| !!! | ATTAAAACTCTACTTTTTTT+AGG | - | chr5_1:11524891-11524910 | Msa0717660:intron | 15.0% |
| !! | ATGAAATGTTGTAATTAGAA+TGG | + | chr5_1:11524294-11524313 | None:intergenic | 20.0% |
| !! | ACACACACAAAAATTAATAT+AGG | + | chr5_1:11524394-11524413 | None:intergenic | 20.0% |
| !!! | TTCTTATTATGGAAATTTTC+TGG | + | chr5_1:11524738-11524757 | None:intergenic | 20.0% |
| !! | AAATCAAATTCATCTAACTA+TGG | - | chr5_1:11525265-11525284 | Msa0717660:CDS | 20.0% |
| !! | ATGAAATGTTGTAATTAGAA+TGG | + | chr5_1:11524294-11524313 | None:intergenic | 20.0% |
| !! | ACACACACAAAAATTAATAT+AGG | + | chr5_1:11524394-11524413 | None:intergenic | 20.0% |
| !!! | TTCTTATTATGGAAATTTTC+TGG | + | chr5_1:11524738-11524757 | None:intergenic | 20.0% |
| !! | AAATCAAATTCATCTAACTA+TGG | - | chr5_1:11525265-11525284 | Msa0717660:CDS | 20.0% |
| ! | AGATCAGATAAGAATATTGA+AGG | - | chr5_1:11523991-11524010 | Msa0717660:CDS | 25.0% |
| !! | AAGGCAAAAATGTCTTTTAT+TGG | - | chr5_1:11524101-11524120 | Msa0717660:CDS | 25.0% |
| !!! | ATTTTTTTGGTCTTCTTCTT+AGG | - | chr5_1:11524991-11525010 | Msa0717660:CDS | 25.0% |
| !!! | AGTTAGATGAATTTGATTTG+AGG | + | chr5_1:11525264-11525283 | None:intergenic | 25.0% |
| ! | AGATCAGATAAGAATATTGA+AGG | - | chr5_1:11523991-11524010 | Msa0717660:CDS | 25.0% |
| !! | AAGGCAAAAATGTCTTTTAT+TGG | - | chr5_1:11524101-11524120 | Msa0717660:CDS | 25.0% |
| !!! | ATTTTTTTGGTCTTCTTCTT+AGG | - | chr5_1:11524991-11525010 | Msa0717660:CDS | 25.0% |
| !!! | AGTTAGATGAATTTGATTTG+AGG | + | chr5_1:11525264-11525283 | None:intergenic | 25.0% |
| AACAACATTCACCAAACAAT+GGG | - | chr5_1:11523924-11523943 | Msa0717660:CDS | 30.0% | |
| ATTCTTATCTGATCTGTTGT+TGG | + | chr5_1:11523986-11524005 | None:intergenic | 30.0% | |
| AAGGATCTTTACTACAACAA+TGG | - | chr5_1:11524010-11524029 | Msa0717660:CDS | 30.0% | |
| ! | GCAATAACAGTATTGTTGTT+TGG | + | chr5_1:11524208-11524227 | None:intergenic | 30.0% |
| AATTACAACATTTCATCTGC+TGG | - | chr5_1:11524298-11524317 | Msa0717660:intron | 30.0% | |
| ! | TTTTGTGTGTGTGTTTATGT+AGG | - | chr5_1:11524402-11524421 | Msa0717660:intron | 30.0% |
| TTTGTGTGTGTGTTTATGTA+GGG | - | chr5_1:11524403-11524422 | Msa0717660:intron | 30.0% | |
| ! | AATTTTCTGGATTGTCCTTT+TGG | + | chr5_1:11524725-11524744 | None:intergenic | 30.0% |
| TGAGGTTGTTCTTCTTATTA+TGG | + | chr5_1:11524749-11524768 | None:intergenic | 30.0% | |
| AATATGGATCAACATGATGA+TGG | + | chr5_1:11525090-11525109 | None:intergenic | 30.0% | |
| TTTGCATAAGCTGAAGAATA+TGG | + | chr5_1:11525106-11525125 | None:intergenic | 30.0% | |
| AAGACCAAATGAAGAAATCA+TGG | - | chr5_1:11525141-11525160 | Msa0717660:CDS | 30.0% | |
| TCTTCCATGATTTCTTCATT+TGG | + | chr5_1:11525148-11525167 | None:intergenic | 30.0% | |
| ATCATGGAAGAATATGAACA+AGG | - | chr5_1:11525157-11525176 | Msa0717660:CDS | 30.0% | |
| TATGAACAAGGACAAGAAAA+TGG | - | chr5_1:11525169-11525188 | Msa0717660:CDS | 30.0% | |
| TCAAATTCATCTAACTATGG+TGG | - | chr5_1:11525268-11525287 | Msa0717660:CDS | 30.0% | |
| AACAACATTCACCAAACAAT+GGG | - | chr5_1:11523924-11523943 | Msa0717660:CDS | 30.0% | |
| ATTCTTATCTGATCTGTTGT+TGG | + | chr5_1:11523986-11524005 | None:intergenic | 30.0% | |
| AAGGATCTTTACTACAACAA+TGG | - | chr5_1:11524010-11524029 | Msa0717660:CDS | 30.0% | |
| ! | GCAATAACAGTATTGTTGTT+TGG | + | chr5_1:11524208-11524227 | None:intergenic | 30.0% |
| AATTACAACATTTCATCTGC+TGG | - | chr5_1:11524298-11524317 | Msa0717660:intron | 30.0% | |
| ! | TTTTGTGTGTGTGTTTATGT+AGG | - | chr5_1:11524402-11524421 | Msa0717660:intron | 30.0% |
| TTTGTGTGTGTGTTTATGTA+GGG | - | chr5_1:11524403-11524422 | Msa0717660:intron | 30.0% | |
| ! | AATTTTCTGGATTGTCCTTT+TGG | + | chr5_1:11524725-11524744 | None:intergenic | 30.0% |
| TGAGGTTGTTCTTCTTATTA+TGG | + | chr5_1:11524749-11524768 | None:intergenic | 30.0% | |
| AATATGGATCAACATGATGA+TGG | + | chr5_1:11525090-11525109 | None:intergenic | 30.0% | |
| TTTGCATAAGCTGAAGAATA+TGG | + | chr5_1:11525106-11525125 | None:intergenic | 30.0% | |
| AAGACCAAATGAAGAAATCA+TGG | - | chr5_1:11525141-11525160 | Msa0717660:CDS | 30.0% | |
| TCTTCCATGATTTCTTCATT+TGG | + | chr5_1:11525148-11525167 | None:intergenic | 30.0% | |
| ATCATGGAAGAATATGAACA+AGG | - | chr5_1:11525157-11525176 | Msa0717660:CDS | 30.0% | |
| TATGAACAAGGACAAGAAAA+TGG | - | chr5_1:11525169-11525188 | Msa0717660:CDS | 30.0% | |
| TCAAATTCATCTAACTATGG+TGG | - | chr5_1:11525268-11525287 | Msa0717660:CDS | 30.0% | |
| CAACAACATTCACCAAACAA+TGG | - | chr5_1:11523923-11523942 | Msa0717660:CDS | 35.0% | |
| TTCACCAAACAATGGGATTA+TGG | - | chr5_1:11523931-11523950 | Msa0717660:CDS | 35.0% | |
| TCACCAAACAATGGGATTAT+GGG | - | chr5_1:11523932-11523951 | Msa0717660:CDS | 35.0% | |
| AGACAGTATGGTAAGATTGA+AGG | - | chr5_1:11524082-11524101 | Msa0717660:CDS | 35.0% | |
| CTAGAGAAAGACAGAAGAAA+AGG | - | chr5_1:11524140-11524159 | Msa0717660:CDS | 35.0% | |
| !! | TTTGGTGCTCTTTGAATGAT+GGG | + | chr5_1:11524190-11524209 | None:intergenic | 35.0% |
| ! | TGTTGTTGTTCATGTTGATC+AGG | + | chr5_1:11524247-11524266 | None:intergenic | 35.0% |
| CATATCCATAGTTACCAATC+TGG | + | chr5_1:11524473-11524492 | None:intergenic | 35.0% | |
| ! | CAGATTGGTAACTATGGATA+TGG | - | chr5_1:11524471-11524490 | Msa0717660:intron | 35.0% |
| ! | TCCCAATGGAAAAGAGTTTT+AGG | - | chr5_1:11524499-11524518 | Msa0717660:intron | 35.0% |
| ! | CCCTAAAACTCTTTTCCATT+GGG | + | chr5_1:11524503-11524522 | None:intergenic | 35.0% |
| ! | CCCAATGGAAAAGAGTTTTA+GGG | - | chr5_1:11524500-11524519 | Msa0717660:intron | 35.0% |
| ! | ACCCTAAAACTCTTTTCCAT+TGG | + | chr5_1:11524504-11524523 | None:intergenic | 35.0% |
| GCTACATACACATTAGACAA+AGG | + | chr5_1:11524603-11524622 | None:intergenic | 35.0% | |
| ATTCAATCCATGATCCATCA+TGG | - | chr5_1:11524633-11524652 | Msa0717660:intron | 35.0% | |
| CTTGTGTATCAAATCTCACA+TGG | + | chr5_1:11524668-11524687 | None:intergenic | 35.0% | |
| TAGTGAAACTGAACTCTTGT+TGG | + | chr5_1:11524836-11524855 | None:intergenic | 35.0% | |
| ATTCATCTAACTATGGTGGT+TGG | - | chr5_1:11525272-11525291 | Msa0717660:CDS | 35.0% | |
| CAACAACATTCACCAAACAA+TGG | - | chr5_1:11523923-11523942 | Msa0717660:CDS | 35.0% | |
| TTCACCAAACAATGGGATTA+TGG | - | chr5_1:11523931-11523950 | Msa0717660:CDS | 35.0% | |
| TCACCAAACAATGGGATTAT+GGG | - | chr5_1:11523932-11523951 | Msa0717660:CDS | 35.0% | |
| AGACAGTATGGTAAGATTGA+AGG | - | chr5_1:11524082-11524101 | Msa0717660:CDS | 35.0% | |
| CTAGAGAAAGACAGAAGAAA+AGG | - | chr5_1:11524140-11524159 | Msa0717660:CDS | 35.0% | |
| !! | TTTGGTGCTCTTTGAATGAT+GGG | + | chr5_1:11524190-11524209 | None:intergenic | 35.0% |
| ! | TGTTGTTGTTCATGTTGATC+AGG | + | chr5_1:11524247-11524266 | None:intergenic | 35.0% |
| CATATCCATAGTTACCAATC+TGG | + | chr5_1:11524473-11524492 | None:intergenic | 35.0% | |
| ! | CAGATTGGTAACTATGGATA+TGG | - | chr5_1:11524471-11524490 | Msa0717660:intron | 35.0% |
| ! | TCCCAATGGAAAAGAGTTTT+AGG | - | chr5_1:11524499-11524518 | Msa0717660:intron | 35.0% |
| ! | CCCTAAAACTCTTTTCCATT+GGG | + | chr5_1:11524503-11524522 | None:intergenic | 35.0% |
| ! | CCCAATGGAAAAGAGTTTTA+GGG | - | chr5_1:11524500-11524519 | Msa0717660:intron | 35.0% |
| ! | ACCCTAAAACTCTTTTCCAT+TGG | + | chr5_1:11524504-11524523 | None:intergenic | 35.0% |
| GCTACATACACATTAGACAA+AGG | + | chr5_1:11524603-11524622 | None:intergenic | 35.0% | |
| ATTCAATCCATGATCCATCA+TGG | - | chr5_1:11524633-11524652 | Msa0717660:intron | 35.0% | |
| CTTGTGTATCAAATCTCACA+TGG | + | chr5_1:11524668-11524687 | None:intergenic | 35.0% | |
| TAGTGAAACTGAACTCTTGT+TGG | + | chr5_1:11524836-11524855 | None:intergenic | 35.0% | |
| ATTCATCTAACTATGGTGGT+TGG | - | chr5_1:11525272-11525291 | Msa0717660:CDS | 35.0% | |
| ! | TGTTGTGGTTGTTGTTGTTG+AGG | + | chr5_1:11523893-11523912 | None:intergenic | 40.0% |
| AGATTCAGAGAATCTCTGCT+AGG | - | chr5_1:11524056-11524075 | Msa0717660:CDS | 40.0% | |
| TCTGCTAGGTTAAGACAGTA+TGG | - | chr5_1:11524070-11524089 | Msa0717660:CDS | 40.0% | |
| !! | GTTTGGTGCTCTTTGAATGA+TGG | + | chr5_1:11524191-11524210 | None:intergenic | 40.0% |
| CTGTTATTGCTGCTGCTAAT+TGG | - | chr5_1:11524218-11524237 | Msa0717660:CDS | 40.0% | |
| TTCATGTTCTTCTGCTGAGA+TGG | - | chr5_1:11524437-11524456 | Msa0717660:intron | 40.0% | |
| TGAAACTGAACTCTTGTTGG+TGG | + | chr5_1:11524833-11524852 | None:intergenic | 40.0% | |
| AGTACCATAAACCCTCACTT+AGG | - | chr5_1:11525055-11525074 | Msa0717660:CDS | 40.0% | |
| AAAGGGAGGGTTTCAATTTC+AGG | + | chr5_1:11525199-11525218 | None:intergenic | 40.0% | |
| ATGCATAGGGAATAAAGGGA+GGG | + | chr5_1:11525212-11525231 | None:intergenic | 40.0% | |
| CAGCATGCATAGGGAATAAA+GGG | + | chr5_1:11525216-11525235 | None:intergenic | 40.0% | |
| TCAGCATGCATAGGGAATAA+AGG | + | chr5_1:11525217-11525236 | None:intergenic | 40.0% | |
| GAATGTCTTCAGCATGCATA+GGG | + | chr5_1:11525225-11525244 | None:intergenic | 40.0% | |
| TGAATGTCTTCAGCATGCAT+AGG | + | chr5_1:11525226-11525245 | None:intergenic | 40.0% | |
| ATGCATGCTGAAGACATTCA+TGG | - | chr5_1:11525226-11525245 | Msa0717660:CDS | 40.0% | |
| GAAGATGCAGGATTCATGTA+TGG | - | chr5_1:11525304-11525323 | Msa0717660:CDS | 40.0% | |
| GAACTTAGCCTCAACTCTTA+CGG | - | chr5_1:11525346-11525365 | Msa0717660:CDS | 40.0% | |
| ! | TGTTGTGGTTGTTGTTGTTG+AGG | + | chr5_1:11523893-11523912 | None:intergenic | 40.0% |
| AGATTCAGAGAATCTCTGCT+AGG | - | chr5_1:11524056-11524075 | Msa0717660:CDS | 40.0% | |
| TCTGCTAGGTTAAGACAGTA+TGG | - | chr5_1:11524070-11524089 | Msa0717660:CDS | 40.0% | |
| !! | GTTTGGTGCTCTTTGAATGA+TGG | + | chr5_1:11524191-11524210 | None:intergenic | 40.0% |
| CTGTTATTGCTGCTGCTAAT+TGG | - | chr5_1:11524218-11524237 | Msa0717660:CDS | 40.0% | |
| TTCATGTTCTTCTGCTGAGA+TGG | - | chr5_1:11524437-11524456 | Msa0717660:intron | 40.0% | |
| TGAAACTGAACTCTTGTTGG+TGG | + | chr5_1:11524833-11524852 | None:intergenic | 40.0% | |
| AGTACCATAAACCCTCACTT+AGG | - | chr5_1:11525055-11525074 | Msa0717660:CDS | 40.0% | |
| AAAGGGAGGGTTTCAATTTC+AGG | + | chr5_1:11525199-11525218 | None:intergenic | 40.0% | |
| ATGCATAGGGAATAAAGGGA+GGG | + | chr5_1:11525212-11525231 | None:intergenic | 40.0% | |
| CAGCATGCATAGGGAATAAA+GGG | + | chr5_1:11525216-11525235 | None:intergenic | 40.0% | |
| TCAGCATGCATAGGGAATAA+AGG | + | chr5_1:11525217-11525236 | None:intergenic | 40.0% | |
| GAATGTCTTCAGCATGCATA+GGG | + | chr5_1:11525225-11525244 | None:intergenic | 40.0% | |
| TGAATGTCTTCAGCATGCAT+AGG | + | chr5_1:11525226-11525245 | None:intergenic | 40.0% | |
| ATGCATGCTGAAGACATTCA+TGG | - | chr5_1:11525226-11525245 | Msa0717660:CDS | 40.0% | |
| GAAGATGCAGGATTCATGTA+TGG | - | chr5_1:11525304-11525323 | Msa0717660:CDS | 40.0% | |
| GAACTTAGCCTCAACTCTTA+CGG | - | chr5_1:11525346-11525365 | Msa0717660:CDS | 40.0% | |
| CTGCCCATAATCCCATTGTT+TGG | + | chr5_1:11523938-11523957 | None:intergenic | 45.0% | |
| GCAGCAGACAAAGTAGTACA+AGG | - | chr5_1:11523954-11523973 | Msa0717660:CDS | 45.0% | |
| GCAGACAAAGTAGTACAAGG+TGG | - | chr5_1:11523957-11523976 | Msa0717660:CDS | 45.0% | |
| CTCTGAATCTGTTCTGCACT+TGG | + | chr5_1:11524046-11524065 | None:intergenic | 45.0% | |
| TCTGCTGAGATGGTTACTGT+AGG | - | chr5_1:11524447-11524466 | Msa0717660:intron | 45.0% | |
| ATGGTTACTGTAGGCCAGAT+TGG | - | chr5_1:11524456-11524475 | Msa0717660:intron | 45.0% | |
| ! | GTAGGCCAGATTGGTAACTA+TGG | - | chr5_1:11524465-11524484 | Msa0717660:intron | 45.0% |
| TGGATATGGATCTGTCCCAA+TGG | - | chr5_1:11524485-11524504 | Msa0717660:intron | 45.0% | |
| !! | GCATGAACCATGATGGATCA+TGG | + | chr5_1:11524643-11524662 | None:intergenic | 45.0% |
| CATGGATGCATGAACCATGA+TGG | + | chr5_1:11524650-11524669 | None:intergenic | 45.0% | |
| ! | TAGGAGTGCACAATATCAGC+TGG | - | chr5_1:11525010-11525029 | Msa0717660:CDS | 45.0% |
| GGATGTAGCAGTAGTCAAGT+TGG | - | chr5_1:11525031-11525050 | Msa0717660:CDS | 45.0% | |
| CCATCCTAAGTGAGGGTTTA+TGG | + | chr5_1:11525062-11525081 | None:intergenic | 45.0% | |
| CCATAAACCCTCACTTAGGA+TGG | - | chr5_1:11525059-11525078 | Msa0717660:CDS | 45.0% | |
| AACCCTCACTTAGGATGGAT+TGG | - | chr5_1:11525064-11525083 | Msa0717660:CDS | 45.0% | |
| CATGCATAGGGAATAAAGGG+AGG | + | chr5_1:11525213-11525232 | None:intergenic | 45.0% | |
| CATGCTGAAGACATTCATGG+TGG | - | chr5_1:11525229-11525248 | Msa0717660:CDS | 45.0% | |
| TGGTATCAAGCTGAAGATGC+AGG | - | chr5_1:11525292-11525311 | Msa0717660:CDS | 45.0% | |
| TGGTTCTCGTACTACTTCCT+TGG | - | chr5_1:11525324-11525343 | Msa0717660:CDS | 45.0% | |
| AGAGTTGAGGCTAAGTTCCA+AGG | + | chr5_1:11525344-11525363 | None:intergenic | 45.0% | |
| ACCTACAACCGTAAGAGTTG+AGG | + | chr5_1:11525357-11525376 | None:intergenic | 45.0% | |
| CTGCCCATAATCCCATTGTT+TGG | + | chr5_1:11523938-11523957 | None:intergenic | 45.0% | |
| GCAGCAGACAAAGTAGTACA+AGG | - | chr5_1:11523954-11523973 | Msa0717660:CDS | 45.0% | |
| GCAGACAAAGTAGTACAAGG+TGG | - | chr5_1:11523957-11523976 | Msa0717660:CDS | 45.0% | |
| CTCTGAATCTGTTCTGCACT+TGG | + | chr5_1:11524046-11524065 | None:intergenic | 45.0% | |
| TCTGCTGAGATGGTTACTGT+AGG | - | chr5_1:11524447-11524466 | Msa0717660:intron | 45.0% | |
| ATGGTTACTGTAGGCCAGAT+TGG | - | chr5_1:11524456-11524475 | Msa0717660:intron | 45.0% | |
| ! | GTAGGCCAGATTGGTAACTA+TGG | - | chr5_1:11524465-11524484 | Msa0717660:intron | 45.0% |
| TGGATATGGATCTGTCCCAA+TGG | - | chr5_1:11524485-11524504 | Msa0717660:intron | 45.0% | |
| !! | GCATGAACCATGATGGATCA+TGG | + | chr5_1:11524643-11524662 | None:intergenic | 45.0% |
| CATGGATGCATGAACCATGA+TGG | + | chr5_1:11524650-11524669 | None:intergenic | 45.0% | |
| ! | TAGGAGTGCACAATATCAGC+TGG | - | chr5_1:11525010-11525029 | Msa0717660:CDS | 45.0% |
| GGATGTAGCAGTAGTCAAGT+TGG | - | chr5_1:11525031-11525050 | Msa0717660:CDS | 45.0% | |
| CCATCCTAAGTGAGGGTTTA+TGG | + | chr5_1:11525062-11525081 | None:intergenic | 45.0% | |
| CCATAAACCCTCACTTAGGA+TGG | - | chr5_1:11525059-11525078 | Msa0717660:CDS | 45.0% | |
| AACCCTCACTTAGGATGGAT+TGG | - | chr5_1:11525064-11525083 | Msa0717660:CDS | 45.0% | |
| CATGCATAGGGAATAAAGGG+AGG | + | chr5_1:11525213-11525232 | None:intergenic | 45.0% | |
| CATGCTGAAGACATTCATGG+TGG | - | chr5_1:11525229-11525248 | Msa0717660:CDS | 45.0% | |
| TGGTATCAAGCTGAAGATGC+AGG | - | chr5_1:11525292-11525311 | Msa0717660:CDS | 45.0% | |
| TGGTTCTCGTACTACTTCCT+TGG | - | chr5_1:11525324-11525343 | Msa0717660:CDS | 45.0% | |
| AGAGTTGAGGCTAAGTTCCA+AGG | + | chr5_1:11525344-11525363 | None:intergenic | 45.0% | |
| ACCTACAACCGTAAGAGTTG+AGG | + | chr5_1:11525357-11525376 | None:intergenic | 45.0% | |
| !! | AACTTAAATTAAAATTAAAA+TGG | + | chr5_1:11524968-11524987 | None:intergenic | 5.0% |
| !! | AACTTAAATTAAAATTAAAA+TGG | + | chr5_1:11524968-11524987 | None:intergenic | 5.0% |
| TGTTGTGTCTGCTGCTGTTG+TGG | + | chr5_1:11523908-11523927 | None:intergenic | 50.0% | |
| GGCCAATCCATCCTAAGTGA+GGG | + | chr5_1:11525069-11525088 | None:intergenic | 50.0% | |
| TGGCCAATCCATCCTAAGTG+AGG | + | chr5_1:11525070-11525089 | None:intergenic | 50.0% | |
| GCCTCAACTCTTACGGTTGT+AGG | - | chr5_1:11525353-11525372 | Msa0717660:CDS | 50.0% | |
| TGTTGTGTCTGCTGCTGTTG+TGG | + | chr5_1:11523908-11523927 | None:intergenic | 50.0% | |
| GGCCAATCCATCCTAAGTGA+GGG | + | chr5_1:11525069-11525088 | None:intergenic | 50.0% | |
| TGGCCAATCCATCCTAAGTG+AGG | + | chr5_1:11525070-11525089 | None:intergenic | 50.0% | |
| GCCTCAACTCTTACGGTTGT+AGG | - | chr5_1:11525353-11525372 | Msa0717660:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 11523881 | 11525396 | 11523881 | ID=Msa0717660;Name=Msa0717660 |
| chr5_1 | mRNA | 11523881 | 11525396 | 11523881 | ID=Msa0717660-mRNA-1;Parent=Msa0717660;Name=Msa0717660-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|306 |
| chr5_1 | exon | 11524958 | 11525396 | 11524958 | ID=Msa0717660-mRNA-1:exon:4703;Parent=Msa0717660-mRNA-1 |
| chr5_1 | exon | 11524756 | 11524853 | 11524756 | ID=Msa0717660-mRNA-1:exon:4702;Parent=Msa0717660-mRNA-1 |
| chr5_1 | exon | 11523881 | 11524264 | 11523881 | ID=Msa0717660-mRNA-1:exon:4701;Parent=Msa0717660-mRNA-1 |
| chr5_1 | CDS | 11524958 | 11525396 | 11524958 | ID=Msa0717660-mRNA-1:cds;Parent=Msa0717660-mRNA-1 |
| chr5_1 | CDS | 11524756 | 11524853 | 11524756 | ID=Msa0717660-mRNA-1:cds;Parent=Msa0717660-mRNA-1 |
| chr5_1 | CDS | 11523881 | 11524264 | 11523881 | ID=Msa0717660-mRNA-1:cds;Parent=Msa0717660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
