Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717940 | AES95290.1 | 74.408 | 211 | 24 | 3 | 1 | 201 | 1 | 191 | 4.71e-100 | 297 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717940 | G7K023 | 74.408 | 211 | 24 | 3 | 1 | 201 | 1 | 191 | 2.25e-100 | 297 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0717940 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717940 | MtrunA17_Chr5g0406781 | 55.975 | 159 | 30 | 4 | 1 | 159 | 1 | 119 | 1.62e-49 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 67 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAGTTGGGTTGGTTTCTT+TGG | 0.162115 | 5_1:-11961574 | None:intergenic |
| TTCTCGGAAGGGTTAGGTTT+AGG | 0.237072 | 5_1:-11961495 | None:intergenic |
| AACCGCTCTCGAAGTCTTAA+TGG | 0.238654 | 5_1:+11961638 | Msa0717940:CDS |
| CCTTCAAAGTTCTTTAAGTA+TGG | 0.240152 | 5_1:+11961596 | Msa0717940:CDS |
| TGTTTGCATCTATAACAATT+TGG | 0.250606 | 5_1:-11961780 | None:intergenic |
| GTAGTTGGGTTGGTTTCTTT+GGG | 0.266039 | 5_1:-11961573 | None:intergenic |
| TCTCGGAAGGGTTAGGTTTA+GGG | 0.267292 | 5_1:-11961494 | None:intergenic |
| AATGGTTTGTCAGCAGCTTC+TGG | 0.287143 | 5_1:+11961867 | Msa0717940:CDS |
| TTGAGGGGACTTGTTGTTGG+TGG | 0.289994 | 5_1:-11961526 | None:intergenic |
| TCTGATGAAGGCGAAGGTTT+AGG | 0.328241 | 5_1:+11962448 | Msa0717940:CDS |
| ATACATCACTCTTCTTCATT+AGG | 0.332064 | 5_1:-11962493 | None:intergenic |
| GTCTTGAGGGGACTTGTTGT+TGG | 0.343036 | 5_1:-11961529 | None:intergenic |
| TAGTTGGGTTGGTTTCTTTG+GGG | 0.344689 | 5_1:-11961572 | None:intergenic |
| GTTGAATTCTCGGAAGGGTT+AGG | 0.378551 | 5_1:-11961501 | None:intergenic |
| CTCTTCCTCCTCTTCATAGC+TGG | 0.393408 | 5_1:-11961720 | None:intergenic |
| AAAGAACTTTGAAGGGTAGT+TGG | 0.393444 | 5_1:-11961588 | None:intergenic |
| TGAGGGGACTTGTTGTTGGT+GGG | 0.402381 | 5_1:-11961525 | None:intergenic |
| AGGGGACTTGTTGTTGGTGG+GGG | 0.408399 | 5_1:-11961523 | None:intergenic |
| AGGTGGGGTGGTTGTTGATG+TGG | 0.426505 | 5_1:-11961907 | None:intergenic |
| AAGAACTTTGAAGGGTAGTT+GGG | 0.431057 | 5_1:-11961587 | None:intergenic |
| GAGTTCAGAGCTCGTGAGAA+TGG | 0.435144 | 5_1:+11961660 | Msa0717940:CDS |
| ACCTCAACCTGATCAATATG+AGG | 0.437745 | 5_1:+11961926 | Msa0717940:CDS |
| TAACAATTTGGATATATAGA+AGG | 0.438362 | 5_1:-11961768 | None:intergenic |
| CATCAGAGGGAGGGTCTTGA+GGG | 0.445658 | 5_1:-11961542 | None:intergenic |
| CCATACTTAAAGAACTTTGA+AGG | 0.446994 | 5_1:-11961596 | None:intergenic |
| CCCTCATATTGATCAGGTTG+AGG | 0.453934 | 5_1:-11961927 | None:intergenic |
| GAAGCTGCTGACAAACCATT+AGG | 0.476282 | 5_1:-11961864 | None:intergenic |
| GCAAACATGTGTTTCCCACT+TGG | 0.483219 | 5_1:+11961796 | Msa0717940:CDS |
| ACTTTGAAGGGTAGTTGGGT+TGG | 0.489348 | 5_1:-11961583 | None:intergenic |
| GGTCCTCTATCTCCATTGGC+TGG | 0.500299 | 5_1:-11962381 | None:intergenic |
| CATATTGATCAGGTTGAGGT+GGG | 0.500892 | 5_1:-11961923 | None:intergenic |
| TCATCAGAGGGAGGGTCTTG+AGG | 0.508193 | 5_1:-11961543 | None:intergenic |
| AGTTCAGAGCTCGTGAGAAT+GGG | 0.512950 | 5_1:+11961661 | Msa0717940:CDS |
| AGCTCGTGAGAATGGGAAGC+TGG | 0.512973 | 5_1:+11961668 | Msa0717940:CDS |
| AGTTGGGTTGGTTTCTTTGG+GGG | 0.515909 | 5_1:-11961571 | None:intergenic |
| CATCACTCTTCTTCATTAGG+AGG | 0.517441 | 5_1:-11962490 | None:intergenic |
| GAGGGGTCCTCTATCTCCAT+TGG | 0.519182 | 5_1:-11962385 | None:intergenic |
| AAGCCAGCCAATGGAGATAG+AGG | 0.520626 | 5_1:+11962378 | Msa0717940:CDS |
| GACTGCATTGATGAACCATA+TGG | 0.524295 | 5_1:+11961818 | Msa0717940:CDS |
| TTGATCAGGTTGAGGTGGGG+TGG | 0.536734 | 5_1:-11961919 | None:intergenic |
| GAGGGGACTTGTTGTTGGTG+GGG | 0.544991 | 5_1:-11961524 | None:intergenic |
| AATGGGAAGCTGGCAGCTGA+TGG | 0.545369 | 5_1:+11961678 | Msa0717940:CDS |
| TCAAAGTTCTTTAAGTATGG+AGG | 0.546799 | 5_1:+11961599 | Msa0717940:CDS |
| CATACTTAAAGAACTTTGAA+GGG | 0.549185 | 5_1:-11961595 | None:intergenic |
| TCATATTGATCAGGTTGAGG+TGG | 0.558741 | 5_1:-11961924 | None:intergenic |
| GATGGAGAAGGTCGAAGTGA+TGG | 0.574972 | 5_1:+11961696 | Msa0717940:CDS |
| TGATGATGAAAGCCAGCCAA+TGG | 0.578386 | 5_1:+11962369 | Msa0717940:CDS |
| GAGTAATATTCGTGAAGTGA+AGG | 0.580783 | 5_1:+11961740 | Msa0717940:CDS |
| GGGGTGGTTGTTGATGTGGA+AGG | 0.586960 | 5_1:-11961903 | None:intergenic |
| ATATTGATCAGGTTGAGGTG+GGG | 0.595131 | 5_1:-11961922 | None:intergenic |
| CTCCATTAAGACTTCGAGAG+CGG | 0.599694 | 5_1:-11961640 | None:intergenic |
| ATGGTCCAGCTATGAAGAGG+AGG | 0.603822 | 5_1:+11961715 | Msa0717940:CDS |
| CTCGGATGCAACATCATCAG+AGG | 0.604023 | 5_1:-11962404 | None:intergenic |
| GGGGATTCATCATCAGAGGG+AGG | 0.610326 | 5_1:-11961552 | None:intergenic |
| TCGGATGCAACATCATCAGA+GGG | 0.613962 | 5_1:-11962403 | None:intergenic |
| ACTGCATCTGAGTCTGATGA+AGG | 0.623088 | 5_1:+11962436 | Msa0717940:CDS |
| AATTTGGATATATAGAAGGA+TGG | 0.631395 | 5_1:-11961764 | None:intergenic |
| TCTGAGTCTGATGAAGGCGA+AGG | 0.633192 | 5_1:+11962442 | Msa0717940:CDS |
| AAGCTGGCAGCTGATGGAGA+AGG | 0.633635 | 5_1:+11961684 | Msa0717940:CDS |
| TTCATCAATGCAGTCCAAGT+GGG | 0.634799 | 5_1:-11961810 | None:intergenic |
| GTGATGGTCCAGCTATGAAG+AGG | 0.637063 | 5_1:+11961712 | Msa0717940:CDS |
| GTTCATCAATGCAGTCCAAG+TGG | 0.645025 | 5_1:-11961811 | None:intergenic |
| AGATGCAGTATCATCAGACT+CGG | 0.649465 | 5_1:-11962422 | None:intergenic |
| CCTCAACCTGATCAATATGA+GGG | 0.650750 | 5_1:+11961927 | Msa0717940:CDS |
| ATCAGAGGGAGGGTCTTGAG+GGG | 0.650850 | 5_1:-11961541 | None:intergenic |
| GGGATTCATCATCAGAGGGA+GGG | 0.659890 | 5_1:-11961551 | None:intergenic |
| CGGATGCAACATCATCAGAG+GGG | 0.768604 | 5_1:-11962402 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTTTGAATTAGAAAATT+AGG | - | chr5_1:11961964-11961983 | None:intergenic | 15.0% |
| !! | ATAGTTTGAATTAGAAAATT+AGG | - | chr5_1:11961964-11961983 | None:intergenic | 15.0% |
| !! | TAACAATTTGGATATATAGA+AGG | - | chr5_1:11961771-11961790 | None:intergenic | 20.0% |
| !!! | TTTTTCGCACTATAATTTTT+AGG | + | chr5_1:11961996-11962015 | Msa0717940:intron | 20.0% |
| !! | AACATTACATAATTGAATCT+TGG | - | chr5_1:11962066-11962085 | None:intergenic | 20.0% |
| !!! | AATGTTTTTCTTTTGTTACT+AGG | + | chr5_1:11962346-11962365 | Msa0717940:intron | 20.0% |
| !! | TAACAATTTGGATATATAGA+AGG | - | chr5_1:11961771-11961790 | None:intergenic | 20.0% |
| !!! | TTTTTCGCACTATAATTTTT+AGG | + | chr5_1:11961996-11962015 | Msa0717940:intron | 20.0% |
| !! | AACATTACATAATTGAATCT+TGG | - | chr5_1:11962066-11962085 | None:intergenic | 20.0% |
| !!! | AATGTTTTTCTTTTGTTACT+AGG | + | chr5_1:11962346-11962365 | Msa0717940:intron | 20.0% |
| ! | CATACTTAAAGAACTTTGAA+GGG | - | chr5_1:11961598-11961617 | None:intergenic | 25.0% |
| ! | AATTTGGATATATAGAAGGA+TGG | - | chr5_1:11961767-11961786 | None:intergenic | 25.0% |
| ! | TGTTTGCATCTATAACAATT+TGG | - | chr5_1:11961783-11961802 | None:intergenic | 25.0% |
| ! | CATATATATGTTTGTGTGTA+TGG | - | chr5_1:11962169-11962188 | None:intergenic | 25.0% |
| ! | TTATGAGATCAAATTCATGT+AGG | + | chr5_1:11962212-11962231 | Msa0717940:intron | 25.0% |
| ! | CATACTTAAAGAACTTTGAA+GGG | - | chr5_1:11961598-11961617 | None:intergenic | 25.0% |
| ! | AATTTGGATATATAGAAGGA+TGG | - | chr5_1:11961767-11961786 | None:intergenic | 25.0% |
| ! | TGTTTGCATCTATAACAATT+TGG | - | chr5_1:11961783-11961802 | None:intergenic | 25.0% |
| ! | CATATATATGTTTGTGTGTA+TGG | - | chr5_1:11962169-11962188 | None:intergenic | 25.0% |
| ! | TTATGAGATCAAATTCATGT+AGG | + | chr5_1:11962212-11962231 | Msa0717940:intron | 25.0% |
| CCATACTTAAAGAACTTTGA+AGG | - | chr5_1:11961599-11961618 | None:intergenic | 30.0% | |
| CCTTCAAAGTTCTTTAAGTA+TGG | + | chr5_1:11961596-11961615 | Msa0717940:CDS | 30.0% | |
| TCAAAGTTCTTTAAGTATGG+AGG | + | chr5_1:11961599-11961618 | Msa0717940:CDS | 30.0% | |
| AAAAATGGTGTTCTTCCATA+TGG | - | chr5_1:11961836-11961855 | None:intergenic | 30.0% | |
| CATTAGGATCACAACAAAAA+TGG | - | chr5_1:11961851-11961870 | None:intergenic | 30.0% | |
| !! | CATTTTTGTTGTGATCCTAA+TGG | + | chr5_1:11961849-11961868 | Msa0717940:CDS | 30.0% |
| TATATAGCCAATAAAACCCT+AGG | - | chr5_1:11962037-11962056 | None:intergenic | 30.0% | |
| CCATACTTAAAGAACTTTGA+AGG | - | chr5_1:11961599-11961618 | None:intergenic | 30.0% | |
| CCTTCAAAGTTCTTTAAGTA+TGG | + | chr5_1:11961596-11961615 | Msa0717940:CDS | 30.0% | |
| TCAAAGTTCTTTAAGTATGG+AGG | + | chr5_1:11961599-11961618 | Msa0717940:CDS | 30.0% | |
| AAAAATGGTGTTCTTCCATA+TGG | - | chr5_1:11961836-11961855 | None:intergenic | 30.0% | |
| CATTAGGATCACAACAAAAA+TGG | - | chr5_1:11961851-11961870 | None:intergenic | 30.0% | |
| !! | CATTTTTGTTGTGATCCTAA+TGG | + | chr5_1:11961849-11961868 | Msa0717940:CDS | 30.0% |
| TATATAGCCAATAAAACCCT+AGG | - | chr5_1:11962037-11962056 | None:intergenic | 30.0% | |
| ! | AAGAACTTTGAAGGGTAGTT+GGG | - | chr5_1:11961590-11961609 | None:intergenic | 35.0% |
| ! | AAAGAACTTTGAAGGGTAGT+TGG | - | chr5_1:11961591-11961610 | None:intergenic | 35.0% |
| GAGTAATATTCGTGAAGTGA+AGG | + | chr5_1:11961740-11961759 | Msa0717940:CDS | 35.0% | |
| ! | GTTTTACCCTCATATTGATC+AGG | - | chr5_1:11961936-11961955 | None:intergenic | 35.0% |
| ! | AAGAACTTTGAAGGGTAGTT+GGG | - | chr5_1:11961590-11961609 | None:intergenic | 35.0% |
| ! | AAAGAACTTTGAAGGGTAGT+TGG | - | chr5_1:11961591-11961610 | None:intergenic | 35.0% |
| GAGTAATATTCGTGAAGTGA+AGG | + | chr5_1:11961740-11961759 | Msa0717940:CDS | 35.0% | |
| ! | GTTTTACCCTCATATTGATC+AGG | - | chr5_1:11961936-11961955 | None:intergenic | 35.0% |
| !! | TAGTTGGGTTGGTTTCTTTG+GGG | - | chr5_1:11961575-11961594 | None:intergenic | 40.0% |
| !! | GTAGTTGGGTTGGTTTCTTT+GGG | - | chr5_1:11961576-11961595 | None:intergenic | 40.0% |
| TTCATCAATGCAGTCCAAGT+GGG | - | chr5_1:11961813-11961832 | None:intergenic | 40.0% | |
| ! | GACTGCATTGATGAACCATA+TGG | + | chr5_1:11961818-11961837 | Msa0717940:CDS | 40.0% |
| !! | ATATTGATCAGGTTGAGGTG+GGG | - | chr5_1:11961925-11961944 | None:intergenic | 40.0% |
| !! | CATATTGATCAGGTTGAGGT+GGG | - | chr5_1:11961926-11961945 | None:intergenic | 40.0% |
| !! | TCATATTGATCAGGTTGAGG+TGG | - | chr5_1:11961927-11961946 | None:intergenic | 40.0% |
| ACCTCAACCTGATCAATATG+AGG | + | chr5_1:11961926-11961945 | Msa0717940:CDS | 40.0% | |
| CCTCAACCTGATCAATATGA+GGG | + | chr5_1:11961927-11961946 | Msa0717940:CDS | 40.0% | |
| CCAATAAAACCCTAGGTCAT+TGG | - | chr5_1:11962030-11962049 | None:intergenic | 40.0% | |
| !! | CCAATGACCTAGGGTTTTAT+TGG | + | chr5_1:11962027-11962046 | Msa0717940:intron | 40.0% |
| AGATGCAGTATCATCAGACT+CGG | - | chr5_1:11962425-11962444 | None:intergenic | 40.0% | |
| !! | TAGTTGGGTTGGTTTCTTTG+GGG | - | chr5_1:11961575-11961594 | None:intergenic | 40.0% |
| !! | GTAGTTGGGTTGGTTTCTTT+GGG | - | chr5_1:11961576-11961595 | None:intergenic | 40.0% |
| TTCATCAATGCAGTCCAAGT+GGG | - | chr5_1:11961813-11961832 | None:intergenic | 40.0% | |
| ! | GACTGCATTGATGAACCATA+TGG | + | chr5_1:11961818-11961837 | Msa0717940:CDS | 40.0% |
| !! | ATATTGATCAGGTTGAGGTG+GGG | - | chr5_1:11961925-11961944 | None:intergenic | 40.0% |
| !! | CATATTGATCAGGTTGAGGT+GGG | - | chr5_1:11961926-11961945 | None:intergenic | 40.0% |
| !! | TCATATTGATCAGGTTGAGG+TGG | - | chr5_1:11961927-11961946 | None:intergenic | 40.0% |
| ACCTCAACCTGATCAATATG+AGG | + | chr5_1:11961926-11961945 | Msa0717940:CDS | 40.0% | |
| CCTCAACCTGATCAATATGA+GGG | + | chr5_1:11961927-11961946 | Msa0717940:CDS | 40.0% | |
| CCAATAAAACCCTAGGTCAT+TGG | - | chr5_1:11962030-11962049 | None:intergenic | 40.0% | |
| !! | CCAATGACCTAGGGTTTTAT+TGG | + | chr5_1:11962027-11962046 | Msa0717940:intron | 40.0% |
| AGATGCAGTATCATCAGACT+CGG | - | chr5_1:11962425-11962444 | None:intergenic | 40.0% | |
| TCTCGGAAGGGTTAGGTTTA+GGG | - | chr5_1:11961497-11961516 | None:intergenic | 45.0% | |
| TTCTCGGAAGGGTTAGGTTT+AGG | - | chr5_1:11961498-11961517 | None:intergenic | 45.0% | |
| GTTGAATTCTCGGAAGGGTT+AGG | - | chr5_1:11961504-11961523 | None:intergenic | 45.0% | |
| TTGGGGGATTCATCATCAGA+GGG | - | chr5_1:11961558-11961577 | None:intergenic | 45.0% | |
| TTTGGGGGATTCATCATCAG+AGG | - | chr5_1:11961559-11961578 | None:intergenic | 45.0% | |
| !! | AGTTGGGTTGGTTTCTTTGG+GGG | - | chr5_1:11961574-11961593 | None:intergenic | 45.0% |
| !! | GGTAGTTGGGTTGGTTTCTT+TGG | - | chr5_1:11961577-11961596 | None:intergenic | 45.0% |
| ! | ACTTTGAAGGGTAGTTGGGT+TGG | - | chr5_1:11961586-11961605 | None:intergenic | 45.0% |
| AACCGCTCTCGAAGTCTTAA+TGG | + | chr5_1:11961638-11961657 | Msa0717940:CDS | 45.0% | |
| CTCCATTAAGACTTCGAGAG+CGG | - | chr5_1:11961643-11961662 | None:intergenic | 45.0% | |
| AGTTCAGAGCTCGTGAGAAT+GGG | + | chr5_1:11961661-11961680 | Msa0717940:CDS | 45.0% | |
| GCAAACATGTGTTTCCCACT+TGG | + | chr5_1:11961796-11961815 | Msa0717940:CDS | 45.0% | |
| GTTCATCAATGCAGTCCAAG+TGG | - | chr5_1:11961814-11961833 | None:intergenic | 45.0% | |
| GAAGCTGCTGACAAACCATT+AGG | - | chr5_1:11961867-11961886 | None:intergenic | 45.0% | |
| ! | AATGGTTTGTCAGCAGCTTC+TGG | + | chr5_1:11961867-11961886 | Msa0717940:CDS | 45.0% |
| ! | CCCTCATATTGATCAGGTTG+AGG | - | chr5_1:11961930-11961949 | None:intergenic | 45.0% |
| GTCAACACTCCAATGACCTA+GGG | + | chr5_1:11962018-11962037 | Msa0717940:intron | 45.0% | |
| ! | TGATGATGAAAGCCAGCCAA+TGG | + | chr5_1:11962369-11962388 | Msa0717940:CDS | 45.0% |
| TCGGATGCAACATCATCAGA+GGG | - | chr5_1:11962406-11962425 | None:intergenic | 45.0% | |
| ACTGCATCTGAGTCTGATGA+AGG | + | chr5_1:11962436-11962455 | Msa0717940:CDS | 45.0% | |
| TCTGATGAAGGCGAAGGTTT+AGG | + | chr5_1:11962448-11962467 | Msa0717940:CDS | 45.0% | |
| TCTCGGAAGGGTTAGGTTTA+GGG | - | chr5_1:11961497-11961516 | None:intergenic | 45.0% | |
| TTCTCGGAAGGGTTAGGTTT+AGG | - | chr5_1:11961498-11961517 | None:intergenic | 45.0% | |
| GTTGAATTCTCGGAAGGGTT+AGG | - | chr5_1:11961504-11961523 | None:intergenic | 45.0% | |
| TTGGGGGATTCATCATCAGA+GGG | - | chr5_1:11961558-11961577 | None:intergenic | 45.0% | |
| TTTGGGGGATTCATCATCAG+AGG | - | chr5_1:11961559-11961578 | None:intergenic | 45.0% | |
| !! | AGTTGGGTTGGTTTCTTTGG+GGG | - | chr5_1:11961574-11961593 | None:intergenic | 45.0% |
| !! | GGTAGTTGGGTTGGTTTCTT+TGG | - | chr5_1:11961577-11961596 | None:intergenic | 45.0% |
| ! | ACTTTGAAGGGTAGTTGGGT+TGG | - | chr5_1:11961586-11961605 | None:intergenic | 45.0% |
| AACCGCTCTCGAAGTCTTAA+TGG | + | chr5_1:11961638-11961657 | Msa0717940:CDS | 45.0% | |
| CTCCATTAAGACTTCGAGAG+CGG | - | chr5_1:11961643-11961662 | None:intergenic | 45.0% | |
| AGTTCAGAGCTCGTGAGAAT+GGG | + | chr5_1:11961661-11961680 | Msa0717940:CDS | 45.0% | |
| GCAAACATGTGTTTCCCACT+TGG | + | chr5_1:11961796-11961815 | Msa0717940:CDS | 45.0% | |
| GTTCATCAATGCAGTCCAAG+TGG | - | chr5_1:11961814-11961833 | None:intergenic | 45.0% | |
| GAAGCTGCTGACAAACCATT+AGG | - | chr5_1:11961867-11961886 | None:intergenic | 45.0% | |
| ! | AATGGTTTGTCAGCAGCTTC+TGG | + | chr5_1:11961867-11961886 | Msa0717940:CDS | 45.0% |
| ! | CCCTCATATTGATCAGGTTG+AGG | - | chr5_1:11961930-11961949 | None:intergenic | 45.0% |
| GTCAACACTCCAATGACCTA+GGG | + | chr5_1:11962018-11962037 | Msa0717940:intron | 45.0% | |
| ! | TGATGATGAAAGCCAGCCAA+TGG | + | chr5_1:11962369-11962388 | Msa0717940:CDS | 45.0% |
| TCGGATGCAACATCATCAGA+GGG | - | chr5_1:11962406-11962425 | None:intergenic | 45.0% | |
| ACTGCATCTGAGTCTGATGA+AGG | + | chr5_1:11962436-11962455 | Msa0717940:CDS | 45.0% | |
| TCTGATGAAGGCGAAGGTTT+AGG | + | chr5_1:11962448-11962467 | Msa0717940:CDS | 45.0% | |
| !!! | ATTTTTTTTTTTTAACTAAT+CGG | + | chr5_1:11962252-11962271 | Msa0717940:intron | 5.0% |
| !!! | ATTTTTTTTTTTTAACTAAT+CGG | + | chr5_1:11962252-11962271 | Msa0717940:intron | 5.0% |
| TGGGGGTTGAATTCTCGGAA+GGG | - | chr5_1:11961509-11961528 | None:intergenic | 50.0% | |
| ! | GTTGGTGGGGGTTGAATTCT+CGG | - | chr5_1:11961514-11961533 | None:intergenic | 50.0% |
| !! | TGAGGGGACTTGTTGTTGGT+GGG | - | chr5_1:11961528-11961547 | None:intergenic | 50.0% |
| !! | TTGAGGGGACTTGTTGTTGG+TGG | - | chr5_1:11961529-11961548 | None:intergenic | 50.0% |
| !! | GTCTTGAGGGGACTTGTTGT+TGG | - | chr5_1:11961532-11961551 | None:intergenic | 50.0% |
| GGGATTCATCATCAGAGGGA+GGG | - | chr5_1:11961554-11961573 | None:intergenic | 50.0% | |
| ! | AGACTTCGAGAGCGGTTTTC+AGG | - | chr5_1:11961635-11961654 | None:intergenic | 50.0% |
| GAGTTCAGAGCTCGTGAGAA+TGG | + | chr5_1:11961660-11961679 | Msa0717940:CDS | 50.0% | |
| GATGGAGAAGGTCGAAGTGA+TGG | + | chr5_1:11961696-11961715 | Msa0717940:CDS | 50.0% | |
| GTGATGGTCCAGCTATGAAG+AGG | + | chr5_1:11961712-11961731 | Msa0717940:CDS | 50.0% | |
| ATGGTCCAGCTATGAAGAGG+AGG | + | chr5_1:11961715-11961734 | Msa0717940:CDS | 50.0% | |
| CTCTTCCTCCTCTTCATAGC+TGG | - | chr5_1:11961723-11961742 | None:intergenic | 50.0% | |
| GGTCAACACTCCAATGACCT+AGG | + | chr5_1:11962017-11962036 | Msa0717940:intron | 50.0% | |
| AAGCCAGCCAATGGAGATAG+AGG | + | chr5_1:11962378-11962397 | Msa0717940:CDS | 50.0% | |
| CGGATGCAACATCATCAGAG+GGG | - | chr5_1:11962405-11962424 | None:intergenic | 50.0% | |
| CTCGGATGCAACATCATCAG+AGG | - | chr5_1:11962407-11962426 | None:intergenic | 50.0% | |
| TCTGAGTCTGATGAAGGCGA+AGG | + | chr5_1:11962442-11962461 | Msa0717940:CDS | 50.0% | |
| TGGGGGTTGAATTCTCGGAA+GGG | - | chr5_1:11961509-11961528 | None:intergenic | 50.0% | |
| ! | GTTGGTGGGGGTTGAATTCT+CGG | - | chr5_1:11961514-11961533 | None:intergenic | 50.0% |
| !! | TGAGGGGACTTGTTGTTGGT+GGG | - | chr5_1:11961528-11961547 | None:intergenic | 50.0% |
| !! | TTGAGGGGACTTGTTGTTGG+TGG | - | chr5_1:11961529-11961548 | None:intergenic | 50.0% |
| !! | GTCTTGAGGGGACTTGTTGT+TGG | - | chr5_1:11961532-11961551 | None:intergenic | 50.0% |
| GGGATTCATCATCAGAGGGA+GGG | - | chr5_1:11961554-11961573 | None:intergenic | 50.0% | |
| ! | AGACTTCGAGAGCGGTTTTC+AGG | - | chr5_1:11961635-11961654 | None:intergenic | 50.0% |
| GAGTTCAGAGCTCGTGAGAA+TGG | + | chr5_1:11961660-11961679 | Msa0717940:CDS | 50.0% | |
| GATGGAGAAGGTCGAAGTGA+TGG | + | chr5_1:11961696-11961715 | Msa0717940:CDS | 50.0% | |
| GTGATGGTCCAGCTATGAAG+AGG | + | chr5_1:11961712-11961731 | Msa0717940:CDS | 50.0% | |
| ATGGTCCAGCTATGAAGAGG+AGG | + | chr5_1:11961715-11961734 | Msa0717940:CDS | 50.0% | |
| CTCTTCCTCCTCTTCATAGC+TGG | - | chr5_1:11961723-11961742 | None:intergenic | 50.0% | |
| GGTCAACACTCCAATGACCT+AGG | + | chr5_1:11962017-11962036 | Msa0717940:intron | 50.0% | |
| AAGCCAGCCAATGGAGATAG+AGG | + | chr5_1:11962378-11962397 | Msa0717940:CDS | 50.0% | |
| CGGATGCAACATCATCAGAG+GGG | - | chr5_1:11962405-11962424 | None:intergenic | 50.0% | |
| CTCGGATGCAACATCATCAG+AGG | - | chr5_1:11962407-11962426 | None:intergenic | 50.0% | |
| TCTGAGTCTGATGAAGGCGA+AGG | + | chr5_1:11962442-11962461 | Msa0717940:CDS | 50.0% | |
| GTGGGGGTTGAATTCTCGGA+AGG | - | chr5_1:11961510-11961529 | None:intergenic | 55.0% | |
| !! | AGGGGACTTGTTGTTGGTGG+GGG | - | chr5_1:11961526-11961545 | None:intergenic | 55.0% |
| !! | GAGGGGACTTGTTGTTGGTG+GGG | - | chr5_1:11961527-11961546 | None:intergenic | 55.0% |
| ATCAGAGGGAGGGTCTTGAG+GGG | - | chr5_1:11961544-11961563 | None:intergenic | 55.0% | |
| CATCAGAGGGAGGGTCTTGA+GGG | - | chr5_1:11961545-11961564 | None:intergenic | 55.0% | |
| TCATCAGAGGGAGGGTCTTG+AGG | - | chr5_1:11961546-11961565 | None:intergenic | 55.0% | |
| GGGGATTCATCATCAGAGGG+AGG | - | chr5_1:11961555-11961574 | None:intergenic | 55.0% | |
| AGCTCGTGAGAATGGGAAGC+TGG | + | chr5_1:11961668-11961687 | Msa0717940:CDS | 55.0% | |
| AATGGGAAGCTGGCAGCTGA+TGG | + | chr5_1:11961678-11961697 | Msa0717940:CDS | 55.0% | |
| AAGCTGGCAGCTGATGGAGA+AGG | + | chr5_1:11961684-11961703 | Msa0717940:CDS | 55.0% | |
| GGGGTGGTTGTTGATGTGGA+AGG | - | chr5_1:11961906-11961925 | None:intergenic | 55.0% | |
| AGGTGGGGTGGTTGTTGATG+TGG | - | chr5_1:11961910-11961929 | None:intergenic | 55.0% | |
| !! | TTGATCAGGTTGAGGTGGGG+TGG | - | chr5_1:11961922-11961941 | None:intergenic | 55.0% |
| GGTCCTCTATCTCCATTGGC+TGG | - | chr5_1:11962384-11962403 | None:intergenic | 55.0% | |
| GAGGGGTCCTCTATCTCCAT+TGG | - | chr5_1:11962388-11962407 | None:intergenic | 55.0% | |
| GTGGGGGTTGAATTCTCGGA+AGG | - | chr5_1:11961510-11961529 | None:intergenic | 55.0% | |
| !! | AGGGGACTTGTTGTTGGTGG+GGG | - | chr5_1:11961526-11961545 | None:intergenic | 55.0% |
| !! | GAGGGGACTTGTTGTTGGTG+GGG | - | chr5_1:11961527-11961546 | None:intergenic | 55.0% |
| ATCAGAGGGAGGGTCTTGAG+GGG | - | chr5_1:11961544-11961563 | None:intergenic | 55.0% | |
| CATCAGAGGGAGGGTCTTGA+GGG | - | chr5_1:11961545-11961564 | None:intergenic | 55.0% | |
| TCATCAGAGGGAGGGTCTTG+AGG | - | chr5_1:11961546-11961565 | None:intergenic | 55.0% | |
| GGGGATTCATCATCAGAGGG+AGG | - | chr5_1:11961555-11961574 | None:intergenic | 55.0% | |
| AGCTCGTGAGAATGGGAAGC+TGG | + | chr5_1:11961668-11961687 | Msa0717940:CDS | 55.0% | |
| AATGGGAAGCTGGCAGCTGA+TGG | + | chr5_1:11961678-11961697 | Msa0717940:CDS | 55.0% | |
| AAGCTGGCAGCTGATGGAGA+AGG | + | chr5_1:11961684-11961703 | Msa0717940:CDS | 55.0% | |
| GGGGTGGTTGTTGATGTGGA+AGG | - | chr5_1:11961906-11961925 | None:intergenic | 55.0% | |
| AGGTGGGGTGGTTGTTGATG+TGG | - | chr5_1:11961910-11961929 | None:intergenic | 55.0% | |
| !! | TTGATCAGGTTGAGGTGGGG+TGG | - | chr5_1:11961922-11961941 | None:intergenic | 55.0% |
| GGTCCTCTATCTCCATTGGC+TGG | - | chr5_1:11962384-11962403 | None:intergenic | 55.0% | |
| GAGGGGTCCTCTATCTCCAT+TGG | - | chr5_1:11962388-11962407 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 11961486 | 11962510 | 11961486 | ID=Msa0717940;Name=Msa0717940 |
| chr5_1 | mRNA | 11961486 | 11962510 | 11961486 | ID=Msa0717940-mRNA-1;Parent=Msa0717940;Name=Msa0717940-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|1|1|2|0|201 |
| chr5_1 | exon | 11961486 | 11961948 | 11961486 | ID=Msa0717940-mRNA-1:exon:4859;Parent=Msa0717940-mRNA-1 |
| chr5_1 | exon | 11962368 | 11962510 | 11962368 | ID=Msa0717940-mRNA-1:exon:4860;Parent=Msa0717940-mRNA-1 |
| chr5_1 | CDS | 11961486 | 11961948 | 11961486 | ID=Msa0717940-mRNA-1:cds;Parent=Msa0717940-mRNA-1 |
| chr5_1 | CDS | 11962368 | 11962510 | 11962368 | ID=Msa0717940-mRNA-1:cds;Parent=Msa0717940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
